data_7N2K
#
_entry.id 7N2K
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7N2K pdb_00007n2k 10.2210/pdb7n2k/pdb
WWPDB D_1000254650 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2022-06-01
2 'Structure model' 1 1 2023-05-10
3 'Structure model' 1 2 2024-05-22
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' chem_comp_atom
4 3 'Structure model' chem_comp_bond
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.journal_id_ISSN'
5 2 'Structure model' '_citation.journal_volume'
6 2 'Structure model' '_citation.page_first'
7 2 'Structure model' '_citation.page_last'
8 2 'Structure model' '_citation.pdbx_database_id_DOI'
9 2 'Structure model' '_citation.pdbx_database_id_PubMed'
10 2 'Structure model' '_citation.title'
11 2 'Structure model' '_citation.year'
12 2 'Structure model' '_citation_author.identifier_ORCID'
13 2 'Structure model' '_citation_author.name'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7N2K
_pdbx_database_status.recvd_initial_deposition_date 2021-05-29
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Flores, M.D.' 1 0000-0002-4483-087X
'Richards, L.S.' 2 0000-0002-1694-1652
'Zee, C.T.' 3 0000-0002-6630-706X
'Glynn, C.' 4 0000-0002-2197-2357
'Gallagher-Jones, M.' 5 0000-0003-4227-917X
'Sawaya, M.R.' 6 0000-0003-0874-9043
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Acs Bio Med Chem Au'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2694-2437
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 3
_citation.language ?
_citation.page_first 201
_citation.page_last 210
_citation.title 'Fragment-Based Ab Initio Phasing of Peptidic Nanocrystals by MicroED.'
_citation.year 2023
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1021/acsbiomedchemau.2c00082
_citation.pdbx_database_id_PubMed 37096030
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Richards, L.S.' 1 ?
primary 'Flores, M.D.' 2 ?
primary 'Millan, C.' 3 ?
primary 'Glynn, C.' 4 ?
primary 'Zee, C.T.' 5 ?
primary 'Sawaya, M.R.' 6 0000-0003-0874-9043
primary 'Gallagher-Jones, M.' 7 ?
primary 'Borges, R.J.' 8 ?
primary 'Uson, I.' 9 ?
primary 'Rodriguez, J.A.' 10 0000-0002-0248-4964
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'prion New1p' 814.800 1 ? ? 'repeat segment' ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code NYNNYQ
_entity_poly.pdbx_seq_one_letter_code_can NYNNYQ
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ASN n
1 2 TYR n
1 3 ASN n
1 4 ASN n
1 5 TYR n
1 6 GLN n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Saccharomyces cerevisiae'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 4932
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
HOH non-polymer . WATER ? 'H2 O' 18.015
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ASN 1 1 1 ASN ASN A . n
A 1 2 TYR 2 2 2 TYR TYR A . n
A 1 3 ASN 3 3 3 ASN ASN A . n
A 1 4 ASN 4 4 4 ASN ASN A . n
A 1 5 TYR 5 5 5 TYR TYR A . n
A 1 6 GLN 6 6 6 GLN GLN A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 3 HOH HOH A .
B 2 HOH 3 103 2 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1
? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2
? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++
http://www.phenix-online.org/ ? PHENIX ? ? package . 3
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 4
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 7N2K
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 27.200
_cell.length_a_esd ?
_cell.length_b 27.200
_cell.length_b_esd ?
_cell.length_c 4.830
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 3
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7N2K
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 144
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7N2K
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type electron
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_reflns.B_iso_Wilson_estimate 11.193
_reflns.entry_id 7N2K
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.100
_reflns.d_resolution_low 13.600
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1357
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 83.400
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 5.817
_reflns.pdbx_Rmerge_I_obs 0.211
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 4.920
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.869
_reflns.pdbx_scaling_rejects 2
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.226
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 7893
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.985
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
1.100 1.190 ? 1.210 ? 431 359 ? 191 53.200 ? ? ? ? 0.483 ? ? ? ? ? ? ? ? 2.257 ? ? ? ? 0.601 ? ? 1 1 0.604 ? ? ? ? ? ? ? ? ? ?
1.190 1.310 ? 2.280 ? 692 309 ? 223 72.200 ? ? ? ? 0.313 ? ? ? ? ? ? ? ? 3.103 ? ? ? ? 0.371 ? ? 2 1 0.913 ? ? ? ? ? ? ? ? ? ?
1.310 1.500 ? 3.530 ? 1691 317 ? 302 95.300 ? ? ? ? 0.351 ? ? ? ? ? ? ? ? 5.599 ? ? ? ? 0.385 ? ? 3 1 0.848 ? ? ? ? ? ? ? ? ? ?
1.500 1.880 ? 6.240 ? 2433 306 ? 306 100.000 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 7.951 ? ? ? ? 0.284 ? ? 4 1 0.962 ? ? ? ? ? ? ? ? ? ?
1.880 13.600 ? 8.860 ? 2646 337 ? 335 99.400 ? ? ? ? 0.192 ? ? ? ? ? ? ? ? 7.899 ? ? ? ? 0.204 ? ? 5 1 0.982 ? ? ? ? ? ? ? ? ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 18.070
_refine.B_iso_mean 7.2134
_refine.B_iso_min 2.490
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7N2K
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.3010
_refine.ls_d_res_low 13.6000
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 969
_refine.ls_number_reflns_R_free 97
_refine.ls_number_reflns_R_work 872
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 97.8800
_refine.ls_percent_reflns_R_free 10.0100
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1643
_refine.ls_R_factor_R_free 0.1854
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1614
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.230
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 20.8300
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.1400
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 1.3010
_refine_hist.d_res_low 13.6000
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 61
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 6
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent 14.99
_refine_hist.pdbx_number_atoms_protein 58
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'ELECTRON CRYSTALLOGRAPHY' 1.3011 1.3475 . . 8 79 88.0000 . . . 0.3074 0.0000 0.2274 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.3475 1.4014 . . 10 84 92.0000 . . . 0.2343 0.0000 0.2561 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.4014 1.4652 . . 10 90 100.0000 . . . 0.2141 0.0000 0.2742 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.4652 1.5423 . . 10 96 100.0000 . . . 0.2370 0.0000 0.1766 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.5423 1.6388 . . 11 93 100.0000 . . . 0.1744 0.0000 0.1965 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.6388 1.7651 . . 8 78 100.0000 . . . 0.4104 0.0000 0.1554 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.7651 1.9422 . . 10 87 100.0000 . . . 0.2253 0.0000 0.1338 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.9422 2.2222 . . 10 93 100.0000 . . . 0.1815 0.0000 0.1499 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 2.2222 2.7958 . . 10 88 100.0000 . . . 0.1450 0.0000 0.1488 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 2.7958 13.6000 . . 10 84 99.0000 . . . 0.1032 0.0000 0.1228 . . . . . . . . . . .
#
_struct.entry_id 7N2K
_struct.title
'MicroED structure of sequence variant of repeat segment of the yeast prion New1p phased by ARCIMBOLDO-BORGES'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7N2K
_struct_keywords.text 'amyloid, MicroED, prion, yeast, New1p, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 7N2K
_struct_ref.pdbx_db_accession 7N2K
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7N2K
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 7N2K
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 0 ?
1 MORE 0 ?
1 'SSA (A^2)' 1010 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_em_3d_fitting.entry_id 7N2K
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol OTHER
_em_3d_fitting.ref_space ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.method ?
#
_em_3d_reconstruction.entry_id 7N2K
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details l
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution ?
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 4.5
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'steric zipper structure of sequence variant of repeat segment of the yeast prion New1p'
_em_entity_assembly.source 'MULTIPLE SOURCES'
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 7N2K
_em_imaging.accelerating_voltage 200
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen ?
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TALOS ARCTICA'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature ?
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.entry_id 7N2K
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 7N2K
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
GLN N N N N 18
GLN CA C N S 19
GLN C C N N 20
GLN O O N N 21
GLN CB C N N 22
GLN CG C N N 23
GLN CD C N N 24
GLN OE1 O N N 25
GLN NE2 N N N 26
GLN OXT O N N 27
GLN H H N N 28
GLN H2 H N N 29
GLN HA H N N 30
GLN HB2 H N N 31
GLN HB3 H N N 32
GLN HG2 H N N 33
GLN HG3 H N N 34
GLN HE21 H N N 35
GLN HE22 H N N 36
GLN HXT H N N 37
HOH O O N N 38
HOH H1 H N N 39
HOH H2 H N N 40
TYR N N N N 41
TYR CA C N S 42
TYR C C N N 43
TYR O O N N 44
TYR CB C N N 45
TYR CG C Y N 46
TYR CD1 C Y N 47
TYR CD2 C Y N 48
TYR CE1 C Y N 49
TYR CE2 C Y N 50
TYR CZ C Y N 51
TYR OH O N N 52
TYR OXT O N N 53
TYR H H N N 54
TYR H2 H N N 55
TYR HA H N N 56
TYR HB2 H N N 57
TYR HB3 H N N 58
TYR HD1 H N N 59
TYR HD2 H N N 60
TYR HE1 H N N 61
TYR HE2 H N N 62
TYR HH H N N 63
TYR HXT H N N 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
GLN N CA sing N N 17
GLN N H sing N N 18
GLN N H2 sing N N 19
GLN CA C sing N N 20
GLN CA CB sing N N 21
GLN CA HA sing N N 22
GLN C O doub N N 23
GLN C OXT sing N N 24
GLN CB CG sing N N 25
GLN CB HB2 sing N N 26
GLN CB HB3 sing N N 27
GLN CG CD sing N N 28
GLN CG HG2 sing N N 29
GLN CG HG3 sing N N 30
GLN CD OE1 doub N N 31
GLN CD NE2 sing N N 32
GLN NE2 HE21 sing N N 33
GLN NE2 HE22 sing N N 34
GLN OXT HXT sing N N 35
HOH O H1 sing N N 36
HOH O H2 sing N N 37
TYR N CA sing N N 38
TYR N H sing N N 39
TYR N H2 sing N N 40
TYR CA C sing N N 41
TYR CA CB sing N N 42
TYR CA HA sing N N 43
TYR C O doub N N 44
TYR C OXT sing N N 45
TYR CB CG sing N N 46
TYR CB HB2 sing N N 47
TYR CB HB3 sing N N 48
TYR CG CD1 doub Y N 49
TYR CG CD2 sing Y N 50
TYR CD1 CE1 sing Y N 51
TYR CD1 HD1 sing N N 52
TYR CD2 CE2 doub Y N 53
TYR CD2 HD2 sing N N 54
TYR CE1 CZ doub Y N 55
TYR CE1 HE1 sing N N 56
TYR CE2 CZ sing Y N 57
TYR CE2 HE2 sing N N 58
TYR CZ OH sing N N 59
TYR OH HH sing N N 60
TYR OXT HXT sing N N 61
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90
_em_3d_crystal_entity.angle_beta 90
_em_3d_crystal_entity.angle_gamma 120
_em_3d_crystal_entity.length_a 27.2
_em_3d_crystal_entity.length_b 27.2
_em_3d_crystal_entity.length_c 4.83
_em_3d_crystal_entity.space_group_name P31
_em_3d_crystal_entity.space_group_num 144
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 1000
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
loop_
_em_diffraction_shell.id
_em_diffraction_shell.em_diffraction_stats_id
_em_diffraction_shell.fourier_space_coverage
_em_diffraction_shell.high_resolution
_em_diffraction_shell.low_resolution
_em_diffraction_shell.multiplicity
_em_diffraction_shell.num_structure_factors
_em_diffraction_shell.phase_residual
1 1 84 13.6007 2.7958 8.1 84 0.01
2 1 88 2.7958 2.2222 8.08 88 0.01
3 1 93 2.2222 1.9422 6.87 93 0.01
4 1 87 1.9422 1.7651 8.32 87 0.01
5 1 78 1.7651 1.6388 8.06 78 0.01
6 1 93 1.6388 1.5423 7.34 93 0.01
7 1 96 1.5423 1.4652 8.09 96 0.01
8 1 90 1.4652 1.4014 8.12 90 0.01
9 1 84 1.4014 1.3475 5.78 84 0.01
10 1 79 1.3475 1.3011 4.07 79 0.01
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details
;Phase
error and phase residual statistics are not routinely reported for
crystallographic structures. No imaging was used. The phases were
obtained by an ab initio crystallographic method described in our
manuscript
;
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 83.4
_em_diffraction_stats.high_resolution 1.1
_em_diffraction_stats.num_intensities_measured 7893
_em_diffraction_stats.num_structure_factors 1357
_em_diffraction_stats.overall_phase_error 20.8
_em_diffraction_stats.overall_phase_residual 0.01
_em_diffraction_stats.phase_error_rejection_criteria 0
_em_diffraction_stats.r_merge 21.1
_em_diffraction_stats.r_sym 21.1
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.05
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? ? ? ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MODEL REFINEMENT' ? ? ? ? 1 ?
9 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ?
10 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
11 'SYMMETRY DETERMINATION' ? ? ? 1 ? ?
12 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ?
13 RECONSTRUCTION ? ? ? 1 ? ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration ?
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Science Foundation (NSF, United States)' 'United States' DMR-1548924 1
'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 2
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM128867 3
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM136508 4
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM136614 5
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM007185 6
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' AI143368 7
'Sao Paulo Research Foundation (FAPESP)' 'United States' 16/24191-8 8
'Sao Paulo Research Foundation (FAPESP)' Brazil 17/13485-3 9
'Spanish Ministry of Science, Innovation, and Universities' 'United States' BES-2015-071397
10
'Spanish Ministry of Economy and Competitiveness' Spain PGC2018-101370-B-100,
11
'Spanish Ministry of Economy and Competitiveness' Spain MDM2014-0435-01
12
'Other government' Spain '2017SGR- 1192'
13
#
_atom_sites.entry_id 7N2K
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.036765
_atom_sites.fract_transf_matrix[1][2] 0.021226
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.042452
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.207039
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASN A 1 1 ? 22.369 5.744 1.094 1.00 7.07 ? 1 ASN A N 1
ATOM 2 C CA . ASN A 1 1 ? 21.081 5.597 0.427 1.00 4.81 ? 1 ASN A CA 1
ATOM 3 C C . ASN A 1 1 ? 19.985 6.337 1.176 1.00 4.87 ? 1 ASN A C 1
ATOM 4 O O . ASN A 1 1 ? 19.911 6.283 2.404 1.00 4.58 ? 1 ASN A O 1
ATOM 5 C CB . ASN A 1 1 ? 20.705 4.120 0.277 1.00 6.92 ? 1 ASN A CB 1
ATOM 6 C CG . ASN A 1 1 ? 21.608 3.376 -0.712 1.00 8.52 ? 1 ASN A CG 1
ATOM 7 O OD1 . ASN A 1 1 ? 22.486 3.968 -1.343 1.00 10.10 ? 1 ASN A OD1 1
ATOM 8 N ND2 . ASN A 1 1 ? 21.385 2.081 -0.848 1.00 8.89 ? 1 ASN A ND2 1
ATOM 9 N N . TYR A 1 2 ? 19.133 7.037 0.431 1.00 3.79 ? 2 TYR A N 1
ATOM 10 C CA . TYR A 1 2 ? 18.017 7.774 1.017 1.00 3.44 ? 2 TYR A CA 1
ATOM 11 C C . TYR A 1 2 ? 18.476 8.796 2.049 1.00 3.55 ? 2 TYR A C 1
ATOM 12 O O . TYR A 1 2 ? 17.754 9.081 2.990 1.00 4.02 ? 2 TYR A O 1
ATOM 13 C CB . TYR A 1 2 ? 16.946 6.847 1.599 1.00 3.13 ? 2 TYR A CB 1
ATOM 14 C CG . TYR A 1 2 ? 16.408 5.869 0.583 1.00 3.49 ? 2 TYR A CG 1
ATOM 15 C CD1 . TYR A 1 2 ? 15.254 6.155 -0.161 1.00 3.72 ? 2 TYR A CD1 1
ATOM 16 C CD2 . TYR A 1 2 ? 17.051 4.653 0.355 1.00 2.94 ? 2 TYR A CD2 1
ATOM 17 C CE1 . TYR A 1 2 ? 14.753 5.251 -1.108 1.00 2.49 ? 2 TYR A CE1 1
ATOM 18 C CE2 . TYR A 1 2 ? 16.556 3.739 -0.586 1.00 3.92 ? 2 TYR A CE2 1
ATOM 19 C CZ . TYR A 1 2 ? 15.404 4.043 -1.309 1.00 3.93 ? 2 TYR A CZ 1
ATOM 20 O OH . TYR A 1 2 ? 14.931 3.146 -2.242 1.00 4.12 ? 2 TYR A OH 1
ATOM 21 N N . ASN A 1 3 ? 19.679 9.349 1.874 1.00 4.04 ? 3 ASN A N 1
ATOM 22 C CA . ASN A 1 3 ? 20.187 10.413 2.731 1.00 5.20 ? 3 ASN A CA 1
ATOM 23 C C . ASN A 1 3 ? 19.833 11.778 2.150 1.00 4.91 ? 3 ASN A C 1
ATOM 24 O O . ASN A 1 3 ? 19.819 11.967 0.928 1.00 5.39 ? 3 ASN A O 1
ATOM 25 C CB . ASN A 1 3 ? 21.713 10.320 2.865 1.00 4.09 ? 3 ASN A CB 1
ATOM 26 C CG . ASN A 1 3 ? 22.161 9.053 3.561 1.00 3.50 ? 3 ASN A CG 1
ATOM 27 O OD1 . ASN A 1 3 ? 21.661 8.715 4.624 1.00 4.17 ? 3 ASN A OD1 1
ATOM 28 N ND2 . ASN A 1 3 ? 23.110 8.348 2.964 1.00 5.61 ? 3 ASN A ND2 1
ATOM 29 N N . ASN A 1 4 ? 19.582 12.742 3.038 1.00 4.54 ? 4 ASN A N 1
ATOM 30 C CA . ASN A 1 4 ? 19.134 14.077 2.660 1.00 4.93 ? 4 ASN A CA 1
ATOM 31 C C . ASN A 1 4 ? 20.145 15.116 3.117 1.00 4.47 ? 4 ASN A C 1
ATOM 32 O O . ASN A 1 4 ? 20.473 15.179 4.303 1.00 6.47 ? 4 ASN A O 1
ATOM 33 C CB . ASN A 1 4 ? 17.784 14.384 3.308 1.00 5.35 ? 4 ASN A CB 1
ATOM 34 C CG . ASN A 1 4 ? 17.239 15.717 2.880 1.00 4.66 ? 4 ASN A CG 1
ATOM 35 O OD1 . ASN A 1 4 ? 17.170 16.663 3.662 1.00 7.36 ? 4 ASN A OD1 1
ATOM 36 N ND2 . ASN A 1 4 ? 16.865 15.810 1.619 1.00 7.63 ? 4 ASN A ND2 1
ATOM 37 N N . TYR A 1 5 ? 20.624 15.940 2.183 1.00 6.40 ? 5 TYR A N 1
ATOM 38 C CA . TYR A 1 5 ? 21.538 17.037 2.489 1.00 6.80 ? 5 TYR A CA 1
ATOM 39 C C . TYR A 1 5 ? 20.920 18.310 1.936 1.00 6.81 ? 5 TYR A C 1
ATOM 40 O O . TYR A 1 5 ? 20.729 18.434 0.725 1.00 9.22 ? 5 TYR A O 1
ATOM 41 C CB . TYR A 1 5 ? 22.919 16.804 1.861 1.00 8.60 ? 5 TYR A CB 1
ATOM 42 C CG . TYR A 1 5 ? 23.506 15.430 2.138 1.00 8.64 ? 5 TYR A CG 1
ATOM 43 C CD1 . TYR A 1 5 ? 24.432 15.241 3.165 1.00 11.81 ? 5 TYR A CD1 1
ATOM 44 C CD2 . TYR A 1 5 ? 23.132 14.320 1.381 1.00 8.81 ? 5 TYR A CD2 1
ATOM 45 C CE1 . TYR A 1 5 ? 24.969 13.985 3.431 1.00 9.93 ? 5 TYR A CE1 1
ATOM 46 C CE2 . TYR A 1 5 ? 23.667 13.058 1.634 1.00 7.85 ? 5 TYR A CE2 1
ATOM 47 C CZ . TYR A 1 5 ? 24.586 12.900 2.657 1.00 9.06 ? 5 TYR A CZ 1
ATOM 48 O OH . TYR A 1 5 ? 25.114 11.649 2.919 1.00 11.26 ? 5 TYR A OH 1
ATOM 49 N N . GLN A 1 6 ? 20.579 19.240 2.815 1.00 8.95 ? 6 GLN A N 1
ATOM 50 C CA . GLN A 1 6 ? 19.903 20.443 2.364 1.00 9.37 ? 6 GLN A CA 1
ATOM 51 C C . GLN A 1 6 ? 20.391 21.670 3.111 1.00 10.61 ? 6 GLN A C 1
ATOM 52 O O . GLN A 1 6 ? 20.040 22.795 2.751 1.00 10.30 ? 6 GLN A O 1
ATOM 53 C CB . GLN A 1 6 ? 18.401 20.291 2.559 1.00 10.35 ? 6 GLN A CB 1
ATOM 54 C CG . GLN A 1 6 ? 18.006 20.244 4.007 1.00 11.31 ? 6 GLN A CG 1
ATOM 55 C CD . GLN A 1 6 ? 16.502 20.307 4.219 1.00 12.98 ? 6 GLN A CD 1
ATOM 56 O OE1 . GLN A 1 6 ? 16.001 21.164 4.947 1.00 14.24 ? 6 GLN A OE1 1
ATOM 57 N NE2 . GLN A 1 6 ? 15.779 19.394 3.589 1.00 11.39 ? 6 GLN A NE2 1
ATOM 58 O OXT . GLN A 1 6 ? 21.133 21.570 4.086 1.00 9.75 ? 6 GLN A OXT 1
HETATM 59 O O . HOH B 2 . ? 25.112 10.153 1.079 1.00 10.99 ? 101 HOH A O 1
HETATM 60 O O . HOH B 2 . ? 17.806 23.166 1.286 1.00 15.90 ? 102 HOH A O 1
HETATM 61 O O . HOH B 2 . ? 13.103 21.040 5.211 1.00 18.07 ? 103 HOH A O 1
#