data_7N2I
#
_entry.id 7N2I
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7N2I pdb_00007n2i 10.2210/pdb7n2i/pdb
WWPDB D_1000254609 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2022-06-01
2 'Structure model' 1 1 2023-05-10
3 'Structure model' 1 2 2024-05-22
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' chem_comp_atom
4 3 'Structure model' chem_comp_bond
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.journal_id_ISSN'
5 2 'Structure model' '_citation.journal_volume'
6 2 'Structure model' '_citation.page_first'
7 2 'Structure model' '_citation.page_last'
8 2 'Structure model' '_citation.pdbx_database_id_DOI'
9 2 'Structure model' '_citation.pdbx_database_id_PubMed'
10 2 'Structure model' '_citation.title'
11 2 'Structure model' '_citation.year'
12 2 'Structure model' '_citation_author.identifier_ORCID'
13 2 'Structure model' '_citation_author.name'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7N2I
_pdbx_database_status.recvd_initial_deposition_date 2021-05-29
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Richards, L.S.' 1 0000-0002-1694-1652
'Flores, M.D.' 2 0000-0002-4483-087X
'Zee, C.T.' 3 0000-0002-6630-706X
'Glynn, C.' 4 0000-0002-2197-2357
'Gallagher-Jones, M.' 5 0000-0003-4227-917X
'Sawaya, M.R.' 6 0000-0003-0874-9043
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Acs Bio Med Chem Au'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2694-2437
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 3
_citation.language ?
_citation.page_first 201
_citation.page_last 210
_citation.title 'Fragment-Based Ab Initio Phasing of Peptidic Nanocrystals by MicroED.'
_citation.year 2023
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1021/acsbiomedchemau.2c00082
_citation.pdbx_database_id_PubMed 37096030
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Richards, L.S.' 1 ?
primary 'Flores, M.D.' 2 ?
primary 'Millan, C.' 3 ?
primary 'Glynn, C.' 4 ?
primary 'Zee, C.T.' 5 ?
primary 'Sawaya, M.R.' 6 0000-0003-0874-9043
primary 'Gallagher-Jones, M.' 7 ?
primary 'Borges, R.J.' 8 ?
primary 'Uson, I.' 9 ?
primary 'Rodriguez, J.A.' 10 0000-0002-0248-4964
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn LECT2 942.023 1 ? ? 'residues 45-53' ?
2 water nat water 18.015 2 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GSTVYAPFT
_entity_poly.pdbx_seq_one_letter_code_can GSTVYAPFT
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 SER n
1 3 THR n
1 4 VAL n
1 5 TYR n
1 6 ALA n
1 7 PRO n
1 8 PHE n
1 9 THR n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 9
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 0 0 GLY GLY A . n
A 1 2 SER 2 1 1 SER SER A . n
A 1 3 THR 3 2 2 THR THR A . n
A 1 4 VAL 4 3 3 VAL VAL A . n
A 1 5 TYR 5 4 4 TYR TYR A . n
A 1 6 ALA 6 5 5 ALA ALA A . n
A 1 7 PRO 7 6 6 PRO PRO A . n
A 1 8 PHE 8 7 7 PHE PHE A . n
A 1 9 THR 9 8 8 THR THR A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 2 HOH HOH A .
B 2 HOH 2 102 1 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1
? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ?
PHENIX ? ? package . 2
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 3
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 105.010
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 7N2I
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 58.400
_cell.length_a_esd ?
_cell.length_b 4.730
_cell.length_b_esd ?
_cell.length_c 19.630
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7N2I
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7N2I
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type electron
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_reflns.B_iso_Wilson_estimate 15.813
_reflns.entry_id 7N2I
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.400
_reflns.d_resolution_low 7.754
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 986
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 80.000
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 4.218
_reflns.pdbx_Rmerge_I_obs 0.159
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 5.160
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.865
_reflns.pdbx_scaling_rejects 1
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.178
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 4159
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.987
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ?
_reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ?
_reflns.pdbx_aniso_diffraction_limit_1 ?
_reflns.pdbx_aniso_diffraction_limit_2 ?
_reflns.pdbx_aniso_diffraction_limit_3 ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ?
_reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_1 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_2 ?
_reflns.pdbx_aniso_B_tensor_eigenvalue_3 ?
_reflns.pdbx_orthogonalization_convention ?
_reflns.pdbx_percent_possible_ellipsoidal ?
_reflns.pdbx_percent_possible_spherical ?
_reflns.pdbx_percent_possible_ellipsoidal_anomalous ?
_reflns.pdbx_percent_possible_spherical_anomalous ?
_reflns.pdbx_redundancy_anomalous ?
_reflns.pdbx_CC_half_anomalous ?
_reflns.pdbx_absDiff_over_sigma_anomalous ?
_reflns.pdbx_percent_possible_anomalous ?
_reflns.pdbx_observed_signal_threshold ?
_reflns.pdbx_signal_type ?
_reflns.pdbx_signal_details ?
_reflns.pdbx_signal_software_id ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
_reflns_shell.pdbx_percent_possible_ellipsoidal
_reflns_shell.pdbx_percent_possible_spherical
_reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous
_reflns_shell.pdbx_percent_possible_spherical_anomalous
_reflns_shell.pdbx_redundancy_anomalous
_reflns_shell.pdbx_CC_half_anomalous
_reflns_shell.pdbx_absDiff_over_sigma_anomalous
_reflns_shell.pdbx_percent_possible_anomalous
1.400 1.480 ? 2.560 ? 622 180 ? 149 82.800 ? ? ? ? 0.385 ? ? ? ? ? ? ? ? 4.174 ? ? ? ? 0.436 ? ? 1 1 0.895 ? ? ? ? ? ? ? ? ? ?
1.480 1.570 ? 3.970 ? 745 180 ? 153 85.000 ? ? ? ? 0.272 ? ? ? ? ? ? ? ? 4.869 ? ? ? ? 0.301 ? ? 2 1 0.929 ? ? ? ? ? ? ? ? ? ?
1.570 1.680 ? 3.800 ? 441 136 ? 108 79.400 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 4.083 ? ? ? ? 0.303 ? ? 3 1 0.951 ? ? ? ? ? ? ? ? ? ?
1.680 1.810 ? 4.420 ? 428 134 ? 109 81.300 ? ? ? ? 0.227 ? ? ? ? ? ? ? ? 3.927 ? ? ? ? 0.256 ? ? 4 1 0.962 ? ? ? ? ? ? ? ? ? ?
1.810 1.980 ? 5.830 ? 486 137 ? 109 79.600 ? ? ? ? 0.210 ? ? ? ? ? ? ? ? 4.459 ? ? ? ? 0.234 ? ? 5 1 0.963 ? ? ? ? ? ? ? ? ? ?
1.980 2.220 ? 6.640 ? 450 126 ? 103 81.700 ? ? ? ? 0.175 ? ? ? ? ? ? ? ? 4.369 ? ? ? ? 0.196 ? ? 6 1 0.975 ? ? ? ? ? ? ? ? ? ?
2.220 2.560 ? 6.770 ? 364 110 ? 87 79.100 ? ? ? ? 0.144 ? ? ? ? ? ? ? ? 4.184 ? ? ? ? 0.161 ? ? 7 1 0.986 ? ? ? ? ? ? ? ? ? ?
2.560 3.130 ? 6.750 ? 221 90 ? 73 81.100 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 3.027 ? ? ? ? 0.169 ? ? 8 1 0.981 ? ? ? ? ? ? ? ? ? ?
3.130 4.430 ? 8.830 ? 317 90 ? 71 78.900 ? ? ? ? 0.148 ? ? ? ? ? ? ? ? 4.465 ? ? ? ? 0.163 ? ? 9 1 0.972 ? ? ? ? ? ? ? ? ? ?
4.430 7.754 ? 7.500 ? 85 49 ? 24 49.000 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? 3.542 ? ? ? ? 0.101 ? ? 10 1 0.997 ? ? ? ? ? ? ? ? ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 24.810
_refine.B_iso_mean 8.7768
_refine.B_iso_min 3.960
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7N2I
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.4020
_refine.ls_d_res_low 7.7540
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 985
_refine.ls_number_reflns_R_free 89
_refine.ls_number_reflns_R_work 896
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 81.2000
_refine.ls_percent_reflns_R_free 9.0400
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1938
_refine.ls_R_factor_R_free 0.1923
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1936
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.400
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 22.6500
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.1300
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 1.4020
_refine_hist.d_res_low 7.7540
_refine_hist.number_atoms_solvent 2
_refine_hist.number_atoms_total 69
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 9
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent 12.66
_refine_hist.pdbx_number_atoms_protein 67
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'ELECTRON CRYSTALLOGRAPHY' 1.4024 1.4522 . . 9 97 85.0000 . . . 0.4549 0.0000 0.2652 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.4522 1.5099 . . 10 95 84.0000 . . . 0.1986 0.0000 0.2414 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.5099 1.5781 . . 10 99 88.0000 . . . 0.2996 0.0000 0.2217 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.5781 1.6605 . . 7 72 78.0000 . . . 0.2548 0.0000 0.2465 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.6605 1.7634 . . 8 79 84.0000 . . . 0.3715 0.0000 0.2201 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.7634 1.8977 . . 8 81 80.0000 . . . 0.1272 0.0000 0.2457 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.8977 2.0853 . . 9 94 81.0000 . . . 0.2017 0.0000 0.2001 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 2.0853 2.3794 . . 10 101 80.0000 . . . 0.1673 0.0000 0.1996 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 2.3794 2.9695 . . 7 75 77.0000 . . . 0.1803 0.0000 0.1834 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 2.9695 7.7540 . . 11 103 77.0000 . . . 0.1280 0.0000 0.1354 . . . . . . . . . . .
#
_struct.entry_id 7N2I
_struct.title 'MicroED structure of human LECT2 (45-53) phased by ARCIMBOLDO-BORGES'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7N2I
_struct_keywords.text 'MicroED, amyloid, LECT2, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 7N2I
_struct_ref.pdbx_db_accession 7N2I
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7N2I
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 9
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 7N2I
_struct_ref_seq.db_align_beg 0
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 0
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 0 ?
1 MORE 0 ?
1 'SSA (A^2)' 1220 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ALA
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 5
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi -145.68
_pdbx_validate_torsion.psi 56.62
#
_em_3d_fitting.entry_id 7N2I
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol OTHER
_em_3d_fitting.ref_space ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.method ?
#
_em_3d_reconstruction.entry_id 7N2I
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution ?
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 4.6
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'Steric zipper structure of a peptide (45-53) of human LECT2'
_em_entity_assembly.source 'MULTIPLE SOURCES'
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 7N2I
_em_imaging.accelerating_voltage 200
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen ?
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TALOS ARCTICA'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature ?
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.entry_id 7N2I
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 7N2I
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLY N N N N 14
GLY CA C N N 15
GLY C C N N 16
GLY O O N N 17
GLY OXT O N N 18
GLY H H N N 19
GLY H2 H N N 20
GLY HA2 H N N 21
GLY HA3 H N N 22
GLY HXT H N N 23
HOH O O N N 24
HOH H1 H N N 25
HOH H2 H N N 26
PHE N N N N 27
PHE CA C N S 28
PHE C C N N 29
PHE O O N N 30
PHE CB C N N 31
PHE CG C Y N 32
PHE CD1 C Y N 33
PHE CD2 C Y N 34
PHE CE1 C Y N 35
PHE CE2 C Y N 36
PHE CZ C Y N 37
PHE OXT O N N 38
PHE H H N N 39
PHE H2 H N N 40
PHE HA H N N 41
PHE HB2 H N N 42
PHE HB3 H N N 43
PHE HD1 H N N 44
PHE HD2 H N N 45
PHE HE1 H N N 46
PHE HE2 H N N 47
PHE HZ H N N 48
PHE HXT H N N 49
PRO N N N N 50
PRO CA C N S 51
PRO C C N N 52
PRO O O N N 53
PRO CB C N N 54
PRO CG C N N 55
PRO CD C N N 56
PRO OXT O N N 57
PRO H H N N 58
PRO HA H N N 59
PRO HB2 H N N 60
PRO HB3 H N N 61
PRO HG2 H N N 62
PRO HG3 H N N 63
PRO HD2 H N N 64
PRO HD3 H N N 65
PRO HXT H N N 66
SER N N N N 67
SER CA C N S 68
SER C C N N 69
SER O O N N 70
SER CB C N N 71
SER OG O N N 72
SER OXT O N N 73
SER H H N N 74
SER H2 H N N 75
SER HA H N N 76
SER HB2 H N N 77
SER HB3 H N N 78
SER HG H N N 79
SER HXT H N N 80
THR N N N N 81
THR CA C N S 82
THR C C N N 83
THR O O N N 84
THR CB C N R 85
THR OG1 O N N 86
THR CG2 C N N 87
THR OXT O N N 88
THR H H N N 89
THR H2 H N N 90
THR HA H N N 91
THR HB H N N 92
THR HG1 H N N 93
THR HG21 H N N 94
THR HG22 H N N 95
THR HG23 H N N 96
THR HXT H N N 97
TYR N N N N 98
TYR CA C N S 99
TYR C C N N 100
TYR O O N N 101
TYR CB C N N 102
TYR CG C Y N 103
TYR CD1 C Y N 104
TYR CD2 C Y N 105
TYR CE1 C Y N 106
TYR CE2 C Y N 107
TYR CZ C Y N 108
TYR OH O N N 109
TYR OXT O N N 110
TYR H H N N 111
TYR H2 H N N 112
TYR HA H N N 113
TYR HB2 H N N 114
TYR HB3 H N N 115
TYR HD1 H N N 116
TYR HD2 H N N 117
TYR HE1 H N N 118
TYR HE2 H N N 119
TYR HH H N N 120
TYR HXT H N N 121
VAL N N N N 122
VAL CA C N S 123
VAL C C N N 124
VAL O O N N 125
VAL CB C N N 126
VAL CG1 C N N 127
VAL CG2 C N N 128
VAL OXT O N N 129
VAL H H N N 130
VAL H2 H N N 131
VAL HA H N N 132
VAL HB H N N 133
VAL HG11 H N N 134
VAL HG12 H N N 135
VAL HG13 H N N 136
VAL HG21 H N N 137
VAL HG22 H N N 138
VAL HG23 H N N 139
VAL HXT H N N 140
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLY N CA sing N N 13
GLY N H sing N N 14
GLY N H2 sing N N 15
GLY CA C sing N N 16
GLY CA HA2 sing N N 17
GLY CA HA3 sing N N 18
GLY C O doub N N 19
GLY C OXT sing N N 20
GLY OXT HXT sing N N 21
HOH O H1 sing N N 22
HOH O H2 sing N N 23
PHE N CA sing N N 24
PHE N H sing N N 25
PHE N H2 sing N N 26
PHE CA C sing N N 27
PHE CA CB sing N N 28
PHE CA HA sing N N 29
PHE C O doub N N 30
PHE C OXT sing N N 31
PHE CB CG sing N N 32
PHE CB HB2 sing N N 33
PHE CB HB3 sing N N 34
PHE CG CD1 doub Y N 35
PHE CG CD2 sing Y N 36
PHE CD1 CE1 sing Y N 37
PHE CD1 HD1 sing N N 38
PHE CD2 CE2 doub Y N 39
PHE CD2 HD2 sing N N 40
PHE CE1 CZ doub Y N 41
PHE CE1 HE1 sing N N 42
PHE CE2 CZ sing Y N 43
PHE CE2 HE2 sing N N 44
PHE CZ HZ sing N N 45
PHE OXT HXT sing N N 46
PRO N CA sing N N 47
PRO N CD sing N N 48
PRO N H sing N N 49
PRO CA C sing N N 50
PRO CA CB sing N N 51
PRO CA HA sing N N 52
PRO C O doub N N 53
PRO C OXT sing N N 54
PRO CB CG sing N N 55
PRO CB HB2 sing N N 56
PRO CB HB3 sing N N 57
PRO CG CD sing N N 58
PRO CG HG2 sing N N 59
PRO CG HG3 sing N N 60
PRO CD HD2 sing N N 61
PRO CD HD3 sing N N 62
PRO OXT HXT sing N N 63
SER N CA sing N N 64
SER N H sing N N 65
SER N H2 sing N N 66
SER CA C sing N N 67
SER CA CB sing N N 68
SER CA HA sing N N 69
SER C O doub N N 70
SER C OXT sing N N 71
SER CB OG sing N N 72
SER CB HB2 sing N N 73
SER CB HB3 sing N N 74
SER OG HG sing N N 75
SER OXT HXT sing N N 76
THR N CA sing N N 77
THR N H sing N N 78
THR N H2 sing N N 79
THR CA C sing N N 80
THR CA CB sing N N 81
THR CA HA sing N N 82
THR C O doub N N 83
THR C OXT sing N N 84
THR CB OG1 sing N N 85
THR CB CG2 sing N N 86
THR CB HB sing N N 87
THR OG1 HG1 sing N N 88
THR CG2 HG21 sing N N 89
THR CG2 HG22 sing N N 90
THR CG2 HG23 sing N N 91
THR OXT HXT sing N N 92
TYR N CA sing N N 93
TYR N H sing N N 94
TYR N H2 sing N N 95
TYR CA C sing N N 96
TYR CA CB sing N N 97
TYR CA HA sing N N 98
TYR C O doub N N 99
TYR C OXT sing N N 100
TYR CB CG sing N N 101
TYR CB HB2 sing N N 102
TYR CB HB3 sing N N 103
TYR CG CD1 doub Y N 104
TYR CG CD2 sing Y N 105
TYR CD1 CE1 sing Y N 106
TYR CD1 HD1 sing N N 107
TYR CD2 CE2 doub Y N 108
TYR CD2 HD2 sing N N 109
TYR CE1 CZ doub Y N 110
TYR CE1 HE1 sing N N 111
TYR CE2 CZ sing Y N 112
TYR CE2 HE2 sing N N 113
TYR CZ OH sing N N 114
TYR OH HH sing N N 115
TYR OXT HXT sing N N 116
VAL N CA sing N N 117
VAL N H sing N N 118
VAL N H2 sing N N 119
VAL CA C sing N N 120
VAL CA CB sing N N 121
VAL CA HA sing N N 122
VAL C O doub N N 123
VAL C OXT sing N N 124
VAL CB CG1 sing N N 125
VAL CB CG2 sing N N 126
VAL CB HB sing N N 127
VAL CG1 HG11 sing N N 128
VAL CG1 HG12 sing N N 129
VAL CG1 HG13 sing N N 130
VAL CG2 HG21 sing N N 131
VAL CG2 HG22 sing N N 132
VAL CG2 HG23 sing N N 133
VAL OXT HXT sing N N 134
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90
_em_3d_crystal_entity.angle_beta 105
_em_3d_crystal_entity.angle_gamma 90
_em_3d_crystal_entity.length_a 58.4
_em_3d_crystal_entity.length_b 4.73
_em_3d_crystal_entity.length_c 19.63
_em_3d_crystal_entity.space_group_name C2
_em_3d_crystal_entity.space_group_num 5
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 1000
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
loop_
_em_diffraction_shell.id
_em_diffraction_shell.em_diffraction_stats_id
_em_diffraction_shell.fourier_space_coverage
_em_diffraction_shell.high_resolution
_em_diffraction_shell.low_resolution
_em_diffraction_shell.multiplicity
_em_diffraction_shell.num_structure_factors
_em_diffraction_shell.phase_residual
1 1 77 7.7545 2.9695 3.54 103 0.01
2 1 77 2.9695 2.3794 4.46 75 0.01
3 1 80 2.3794 2.0853 3.02 101 0.01
4 1 81 2.0853 1.8977 4.18 94 0.01
5 1 80 1.8977 1.7634 4.37 81 0.01
6 1 84 1.7634 1.6605 4.46 79 0.01
7 1 78 1.6605 1.5781 3.93 72 0.01
8 1 88 1.5781 1.5099 4.08 99 0.01
9 1 84 1.5099 1.4522 4.87 95 0.01
10 1 85 1.4522 1.4024 4.17 97 0.01
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details
;Phase
error and phase residual statistics are not routinely reported for
crystallographic structures. No imaging was used. The phases were
obtained by an ab initio crystallographic method described in our
manuscript
;
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 80
_em_diffraction_stats.high_resolution 1.40
_em_diffraction_stats.num_intensities_measured 4159
_em_diffraction_stats.num_structure_factors 986
_em_diffraction_stats.overall_phase_error 22.72
_em_diffraction_stats.overall_phase_residual 0.01
_em_diffraction_stats.phase_error_rejection_criteria 0
_em_diffraction_stats.r_merge 15.9
_em_diffraction_stats.r_sym 15.9
#
_em_entity_assembly_molwt.entity_assembly_id 1
_em_entity_assembly_molwt.id 1
_em_entity_assembly_molwt.experimental_flag YES
_em_entity_assembly_molwt.units KILODALTONS/NANOMETER
_em_entity_assembly_molwt.value 0.942
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.05
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? ? ? ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MODEL REFINEMENT' ? ? ? ? 1 ?
9 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ?
10 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
11 'SYMMETRY DETERMINATION' ? ? ? 1 ? ?
12 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ?
13 RECONSTRUCTION ? ? ? 1 ? ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration ?
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Science Foundation (NSF, United States)' 'United States' DMR-1548924 1
'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 2
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM128867 3
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM136508 4
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM136614 5
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM007185 6
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' AI143368 7
'Sao Paulo Research Foundation (FAPESP)' 'United States' 16/24191-8 8
'Sao Paulo Research Foundation (FAPESP)' Brazil 17/13485-3 9
'Spanish Ministry of Science, Innovation, and Universities' 'United States' BES-2015-071397
10
'Spanish Ministry of Economy and Competitiveness' Spain PGC2018-101370-B-100,
11
'Spanish Ministry of Economy and Competitiveness' Spain MDM2014-0435-01
12
'Other government' Spain '2017SGR- 1192'
13
#
_atom_sites.entry_id 7N2I
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.017123
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.004590
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.211416
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.052741
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? 26.606 3.420 4.944 1.00 17.40 ? 0 GLY A N 1
ATOM 2 C CA . GLY A 1 1 ? 25.680 3.579 6.048 1.00 13.53 ? 0 GLY A CA 1
ATOM 3 C C . GLY A 1 1 ? 24.611 2.507 6.061 1.00 9.49 ? 0 GLY A C 1
ATOM 4 O O . GLY A 1 1 ? 24.436 1.777 5.091 1.00 14.50 ? 0 GLY A O 1
ATOM 5 N N . SER A 1 2 ? 23.900 2.405 7.174 1.00 9.09 ? 1 SER A N 1
ATOM 6 C CA . SER A 1 2 ? 22.770 1.498 7.263 1.00 6.71 ? 1 SER A CA 1
ATOM 7 C C . SER A 1 2 ? 21.495 2.223 6.868 1.00 5.68 ? 1 SER A C 1
ATOM 8 O O . SER A 1 2 ? 21.431 3.446 6.835 1.00 6.97 ? 1 SER A O 1
ATOM 9 C CB . SER A 1 2 ? 22.640 0.931 8.674 1.00 10.35 ? 1 SER A CB 1
ATOM 10 O OG . SER A 1 2 ? 23.807 0.214 9.030 1.00 10.87 ? 1 SER A OG 1
ATOM 11 N N . THR A 1 3 ? 20.472 1.448 6.570 1.00 6.39 ? 2 THR A N 1
ATOM 12 C CA . THR A 1 3 ? 19.253 1.994 6.017 1.00 5.89 ? 2 THR A CA 1
ATOM 13 C C . THR A 1 3 ? 18.078 1.290 6.661 1.00 6.11 ? 2 THR A C 1
ATOM 14 O O . THR A 1 3 ? 18.082 0.067 6.803 1.00 6.07 ? 2 THR A O 1
ATOM 15 C CB . THR A 1 3 ? 19.199 1.731 4.506 1.00 8.91 ? 2 THR A CB 1
ATOM 16 O OG1 . THR A 1 3 ? 20.373 2.268 3.884 1.00 10.62 ? 2 THR A OG1 1
ATOM 17 C CG2 . THR A 1 3 ? 17.968 2.356 3.890 1.00 9.10 ? 2 THR A CG2 1
ATOM 18 N N . VAL A 1 4 ? 17.080 2.066 7.061 1.00 6.44 ? 3 VAL A N 1
ATOM 19 C CA . VAL A 1 4 ? 15.739 1.552 7.271 1.00 4.92 ? 3 VAL A CA 1
ATOM 20 C C . VAL A 1 4 ? 14.894 2.140 6.162 1.00 4.88 ? 3 VAL A C 1
ATOM 21 O O . VAL A 1 4 ? 14.752 3.364 6.067 1.00 5.53 ? 3 VAL A O 1
ATOM 22 C CB . VAL A 1 4 ? 15.186 1.912 8.653 1.00 5.32 ? 3 VAL A CB 1
ATOM 23 C CG1 . VAL A 1 4 ? 13.693 1.598 8.719 1.00 6.64 ? 3 VAL A CG1 1
ATOM 24 C CG2 . VAL A 1 4 ? 15.948 1.149 9.725 1.00 5.37 ? 3 VAL A CG2 1
ATOM 25 N N . TYR A 1 5 ? 14.396 1.285 5.294 1.00 5.33 ? 4 TYR A N 1
ATOM 26 C CA . TYR A 1 5 ? 13.564 1.697 4.181 1.00 4.07 ? 4 TYR A CA 1
ATOM 27 C C . TYR A 1 5 ? 12.164 1.251 4.547 1.00 4.54 ? 4 TYR A C 1
ATOM 28 O O . TYR A 1 5 ? 11.860 0.055 4.500 1.00 4.61 ? 4 TYR A O 1
ATOM 29 C CB . TYR A 1 5 ? 14.026 1.006 2.907 1.00 6.66 ? 4 TYR A CB 1
ATOM 30 C CG . TYR A 1 5 ? 13.195 1.352 1.701 1.00 5.78 ? 4 TYR A CG 1
ATOM 31 C CD1 . TYR A 1 5 ? 13.546 2.405 0.876 1.00 7.04 ? 4 TYR A CD1 1
ATOM 32 C CD2 . TYR A 1 5 ? 12.060 0.628 1.384 1.00 6.40 ? 4 TYR A CD2 1
ATOM 33 C CE1 . TYR A 1 5 ? 12.799 2.713 -0.230 1.00 6.27 ? 4 TYR A CE1 1
ATOM 34 C CE2 . TYR A 1 5 ? 11.299 0.939 0.278 1.00 8.08 ? 4 TYR A CE2 1
ATOM 35 C CZ . TYR A 1 5 ? 11.668 1.988 -0.519 1.00 9.14 ? 4 TYR A CZ 1
ATOM 36 O OH . TYR A 1 5 ? 10.909 2.298 -1.621 1.00 9.33 ? 4 TYR A OH 1
ATOM 37 N N . ALA A 1 6 ? 11.329 2.195 4.931 1.00 5.25 ? 5 ALA A N 1
ATOM 38 C CA . ALA A 1 6 ? 10.005 1.805 5.369 1.00 4.19 ? 5 ALA A CA 1
ATOM 39 C C . ALA A 1 6 ? 8.974 2.852 4.979 1.00 3.96 ? 5 ALA A C 1
ATOM 40 O O . ALA A 1 6 ? 8.249 3.349 5.847 1.00 5.30 ? 5 ALA A O 1
ATOM 41 C CB . ALA A 1 6 ? 10.004 1.594 6.879 1.00 4.55 ? 5 ALA A CB 1
ATOM 42 N N . PRO A 1 7 ? 8.854 3.191 3.696 1.00 6.32 ? 6 PRO A N 1
ATOM 43 C CA . PRO A 1 7 ? 7.727 4.027 3.279 1.00 4.06 ? 6 PRO A CA 1
ATOM 44 C C . PRO A 1 7 ? 6.441 3.306 3.620 1.00 4.35 ? 6 PRO A C 1
ATOM 45 O O . PRO A 1 7 ? 6.356 2.082 3.547 1.00 4.89 ? 6 PRO A O 1
ATOM 46 C CB . PRO A 1 7 ? 7.909 4.131 1.765 1.00 6.70 ? 6 PRO A CB 1
ATOM 47 C CG . PRO A 1 7 ? 8.585 2.862 1.402 1.00 5.20 ? 6 PRO A CG 1
ATOM 48 C CD . PRO A 1 7 ? 9.543 2.609 2.534 1.00 5.92 ? 6 PRO A CD 1
ATOM 49 N N . PHE A 1 8 ? 5.431 4.064 4.009 1.00 6.10 ? 7 PHE A N 1
ATOM 50 C CA . PHE A 1 8 ? 4.224 3.384 4.421 1.00 6.14 ? 7 PHE A CA 1
ATOM 51 C C . PHE A 1 8 ? 2.996 4.209 4.106 1.00 8.04 ? 7 PHE A C 1
ATOM 52 O O . PHE A 1 8 ? 3.073 5.409 3.841 1.00 7.03 ? 7 PHE A O 1
ATOM 53 C CB . PHE A 1 8 ? 4.272 2.963 5.888 1.00 7.89 ? 7 PHE A CB 1
ATOM 54 C CG . PHE A 1 8 ? 4.344 4.099 6.874 1.00 8.64 ? 7 PHE A CG 1
ATOM 55 C CD1 . PHE A 1 8 ? 3.188 4.616 7.439 1.00 9.74 ? 7 PHE A CD1 1
ATOM 56 C CD2 . PHE A 1 8 ? 5.567 4.593 7.296 1.00 8.41 ? 7 PHE A CD2 1
ATOM 57 C CE1 . PHE A 1 8 ? 3.249 5.631 8.373 1.00 8.14 ? 7 PHE A CE1 1
ATOM 58 C CE2 . PHE A 1 8 ? 5.633 5.614 8.230 1.00 7.87 ? 7 PHE A CE2 1
ATOM 59 C CZ . PHE A 1 8 ? 4.475 6.124 8.775 1.00 8.52 ? 7 PHE A CZ 1
ATOM 60 N N . THR A 1 9 ? 1.860 3.522 4.105 1.00 10.75 ? 8 THR A N 1
ATOM 61 C CA . THR A 1 9 ? 0.557 4.153 4.058 1.00 16.25 ? 8 THR A CA 1
ATOM 62 C C . THR A 1 9 ? -0.311 3.374 5.031 1.00 20.10 ? 8 THR A C 1
ATOM 63 O O . THR A 1 9 ? 0.118 2.338 5.543 1.00 18.08 ? 8 THR A O 1
ATOM 64 C CB . THR A 1 9 ? -0.084 4.082 2.657 1.00 22.95 ? 8 THR A CB 1
ATOM 65 O OG1 . THR A 1 9 ? -0.391 2.720 2.339 1.00 24.81 ? 8 THR A OG1 1
ATOM 66 C CG2 . THR A 1 9 ? 0.848 4.652 1.596 1.00 24.19 ? 8 THR A CG2 1
ATOM 67 O OXT . THR A 1 9 ? -1.441 3.752 5.332 1.00 21.92 ? 8 THR A OXT 1
HETATM 68 O O . HOH B 2 . ? 20.665 3.540 1.987 1.00 13.76 ? 101 HOH A O 1
HETATM 69 O O . HOH B 2 . ? 4.629 1.501 1.407 1.00 11.55 ? 102 HOH A O 1
#