data_7LV2
#
_entry.id 7LV2
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7LV2 pdb_00007lv2 10.2210/pdb7lv2/pdb
WWPDB D_1000255060 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2021-03-17
2 'Structure model' 1 1 2021-03-24
3 'Structure model' 1 2 2024-03-06
4 'Structure model' 1 3 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' citation
5 3 'Structure model' database_2
6 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.pdbx_database_id_PubMed'
2 2 'Structure model' '_citation.title'
3 3 'Structure model' '_citation.journal_id_ISSN'
4 3 'Structure model' '_database_2.pdbx_DOI'
5 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7LV2
_pdbx_database_status.recvd_initial_deposition_date 2021-02-23
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Hou, K.' 1 0000-0003-3869-2076
'Sawaya, M.R.' 2 0000-0003-0874-9043
'Eisenberg, D.S.' 3 0000-0003-2432-5419
'Cascio, D.' 4 0000-0002-3877-6803
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Biorxiv
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2692-8205
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume ?
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title 'Inhibition of amyloid formation of the Nucleoprotein of SARS-CoV-2.'
_citation.year 2021
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1101/2021.03.05.434000
_citation.pdbx_database_id_PubMed 33688654
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tayeb-Fligelman, E.' 1 ?
primary 'Cheng, X.' 2 ?
primary 'Tai, C.' 3 ?
primary 'Bowler, J.T.' 4 ?
primary 'Griner, S.' 5 ?
primary 'Sawaya, M.R.' 6 ?
primary 'Seidler, P.M.' 7 ?
primary 'Jiang, Y.X.' 8 ?
primary 'Lu, J.' 9 ?
primary 'Rosenberg, G.M.' 10 ?
primary 'Salwinski, L.' 11 ?
primary 'Abskharon, R.' 12 ?
primary 'Zee, C.T.' 13 ?
primary 'Hou, K.' 14 ?
primary 'Li, Y.' 15 ?
primary 'Boyer, D.R.' 16 ?
primary 'Murray, K.A.' 17 ?
primary 'Falcon, G.' 18 ?
primary 'Anderson, D.H.' 19 ?
primary 'Cascio, D.' 20 ?
primary 'Saelices, L.' 21 ?
primary 'Damoiseaux, R.' 22 ?
primary 'Guo, F.' 23 ?
primary 'Eisenberg, D.S.' 24 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Nucleoprotein GSQASS' 535.507 1 ? ? ? ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'N,Nucleocapsid protein,NC,Protein N'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GSQASS
_entity_poly.pdbx_seq_one_letter_code_can GSQASS
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 SER n
1 3 GLN n
1 4 ALA n
1 5 SER n
1 6 SER n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Severe acute respiratory syndrome coronavirus 2'
_pdbx_entity_src_syn.organism_common_name '2019-nCoV, SARS-CoV-2'
_pdbx_entity_src_syn.ncbi_taxonomy_id 2697049
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 179 179 GLY GLY A . n
A 1 2 SER 2 180 180 SER SER A . n
A 1 3 GLN 3 181 181 GLN GLN A . n
A 1 4 ALA 4 182 182 ALA ALA A . n
A 1 5 SER 5 183 183 SER SER A . n
A 1 6 SER 6 184 184 SER SER A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 201 193 HOH HOH A .
B 2 HOH 2 202 192 HOH HOH A .
B 2 HOH 3 203 191 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Jan 31, 2020' 1
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 'Jan 31, 2020' 2
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 3
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 4
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 7LV2
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 4.770
_cell.length_a_esd ?
_cell.length_b 13.600
_cell.length_b_esd ?
_cell.length_c 42.440
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7LV2
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7LV2
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 1.29
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 4.3
_exptl_crystal.description Needle
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'sodium potassium tartrate, lithium sulfate, TRIS, pH 7.0'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2020-06-20
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator 'Si (111)'
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9792
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate 15.771
_reflns.entry_id 7LV2
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.300
_reflns.d_resolution_low 12.951
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 809
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 93.200
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 2.266
_reflns.pdbx_Rmerge_I_obs 0.126
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 3.470
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.874
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.161
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.997
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
1.300 1.390 ? 0.690 ? ? ? ? 139 95.900 ? ? ? ? 1.045 ? ? ? ? ? ? ? ? 2.432 ? ? ? ? 1.306 ? ? 1 1 0.567 ? ?
1.390 1.500 ? 1.020 ? ? ? ? 139 97.900 ? ? ? ? 0.734 ? ? ? ? ? ? ? ? 2.295 ? ? ? ? 0.928 ? ? 2 1 0.636 ? ?
1.500 1.640 ? 2.530 ? ? ? ? 127 94.800 ? ? ? ? 0.340 ? ? ? ? ? ? ? ? 2.299 ? ? ? ? 0.431 ? ? 3 1 0.912 ? ?
1.640 1.840 ? 2.270 ? ? ? ? 99 96.100 ? ? ? ? 0.346 ? ? ? ? ? ? ? ? 2.303 ? ? ? ? 0.441 ? ? 4 1 0.911 ? ?
1.840 2.120 ? 5.040 ? ? ? ? 103 89.600 ? ? ? ? 0.120 ? ? ? ? ? ? ? ? 2.282 ? ? ? ? 0.152 ? ? 5 1 0.987 ? ?
2.120 2.600 ? 6.130 ? ? ? ? 91 97.800 ? ? ? ? 0.122 ? ? ? ? ? ? ? ? 2.176 ? ? ? ? 0.153 ? ? 6 1 0.982 ? ?
2.600 3.680 ? 7.780 ? ? ? ? 66 85.700 ? ? ? ? 0.057 ? ? ? ? ? ? ? ? 2.015 ? ? ? ? 0.075 ? ? 7 1 0.995 ? ?
3.680 12.951 ? 9.620 ? ? ? ? 45 76.300 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? 2.000 ? ? ? ? 0.066 ? ? 8 1 0.998 ? ?
#
_refine.aniso_B[1][1] -1.126
_refine.aniso_B[1][2] -0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][2] 1.716
_refine.aniso_B[2][3] -0.000
_refine.aniso_B[3][3] -0.590
_refine.B_iso_max ?
_refine.B_iso_mean 10.668
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.956
_refine.correlation_coeff_Fo_to_Fc_free 0.980
_refine.details 'Hydrogens have been added in their riding positions'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7LV2
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.301
_refine.ls_d_res_low 12.951
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 798
_refine.ls_number_reflns_R_free 79
_refine.ls_number_reflns_R_work 719
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 94.438
_refine.ls_percent_reflns_R_free 9.900
_refine.ls_R_factor_all 0.248
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_R_free 0.2420
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2488
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'MASK BULK SOLVENT'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'ideal beta strand AAAAAA'
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.102
_refine.pdbx_overall_ESU_R_Free 0.085
_refine.pdbx_solvent_vdw_probe_radii 1.200
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.details ?
_refine_hist.d_res_high 1.301
_refine_hist.d_res_low 12.951
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 40
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total ?
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 37
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.017 0.014 45 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.035 0.019 39 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 1.751 1.630 62 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 6.804 1.726 96 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 4.301 5.000 9 ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? 41.435 30.000 1 ? r_dihedral_angle_2_deg ? ?
'X-RAY DIFFRACTION' ? 11.137 15.000 7 ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? 0.129 0.200 7 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.009 0.020 63 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.004 0.020 9 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? 0.058 0.200 1 ? r_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.220 0.200 18 ? r_symmetry_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.133 0.200 21 ? r_nbtor_refined ? ?
'X-RAY DIFFRACTION' ? 0.176 0.200 32 ? r_symmetry_nbtor_other ? ?
'X-RAY DIFFRACTION' ? 0.037 0.200 2 ? r_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.111 0.200 7 ? r_symmetry_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.236 0.200 14 ? r_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.201 0.200 5 ? r_symmetry_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 1.662 1.063 28 ? r_mcbond_it ? ?
'X-RAY DIFFRACTION' ? 1.411 1.020 27 ? r_mcbond_other ? ?
'X-RAY DIFFRACTION' ? 2.388 1.510 33 ? r_mcangle_it ? ?
'X-RAY DIFFRACTION' ? 2.480 1.547 34 ? r_mcangle_other ? ?
'X-RAY DIFFRACTION' ? 2.371 1.239 17 ? r_scbond_it ? ?
'X-RAY DIFFRACTION' ? 1.676 1.164 16 ? r_scbond_other ? ?
'X-RAY DIFFRACTION' ? 3.762 1.831 26 ? r_scangle_it ? ?
'X-RAY DIFFRACTION' ? 3.361 1.812 26 ? r_scangle_other ? ?
'X-RAY DIFFRACTION' ? 3.378 11.779 39 ? r_lrange_it ? ?
'X-RAY DIFFRACTION' ? 3.631 10.969 38 ? r_lrange_other ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 1.301 1.334 56 . 5 50 98.2143 . 0.460 . 0.728 . 0.441 . . . . . 0.429 . 20 . 0.680 0.527
'X-RAY DIFFRACTION' 1.334 1.371 58 . 6 51 98.2759 . 0.442 . 0.477 . 0.438 . . . . . 0.441 . 20 . 0.599 0.287
'X-RAY DIFFRACTION' 1.371 1.410 55 . 5 44 89.0909 . 0.385 . 0.203 . 0.402 . . . . . 0.398 . 20 . 0.689 0.486
'X-RAY DIFFRACTION' 1.410 1.453 55 . 5 49 98.1818 . 0.446 . 0.474 . 0.443 . . . . . 0.455 . 20 . 0.651 0.438
'X-RAY DIFFRACTION' 1.453 1.500 58 . 6 52 100.0000 . 0.386 . 0.554 . 0.373 . . . . . 0.355 . 20 . 0.737 0.236
'X-RAY DIFFRACTION' 1.500 1.552 59 . 6 53 100.0000 . 0.299 . 0.277 . 0.301 . . . . . 0.287 . 20 . 0.815 0.636
'X-RAY DIFFRACTION' 1.552 1.609 50 . 5 39 88.0000 . 0.296 . 0.237 . 0.302 . . . . . 0.293 . 20 . 0.915 0.789
'X-RAY DIFFRACTION' 1.609 1.674 42 . 4 37 97.6190 . 0.231 . 0.210 . 0.232 . . . . . 0.213 . 20 . 0.918 0.419
'X-RAY DIFFRACTION' 1.674 1.747 41 . 4 35 95.1219 . 0.330 . 0.494 . 0.300 . . . . . 0.266 . 20 . 0.889 0.736
'X-RAY DIFFRACTION' 1.747 1.831 43 . 4 38 97.6744 . 0.391 . 0.324 . 0.401 . . . . . 0.367 . 20 . 0.831 0.916
'X-RAY DIFFRACTION' 1.831 1.927 41 . 2 30 78.0488 . 0.258 . 0.155 . 0.275 . . . . . 0.249 . 20 . 0.925 0.900
'X-RAY DIFFRACTION' 1.927 2.042 42 . 4 37 97.6190 . 0.218 . 0.483 . 0.202 . . . . . 0.188 . 20 . 0.957 0.842
'X-RAY DIFFRACTION' 2.042 2.179 40 . 4 36 100.0000 . 0.209 . 0.082 . 0.218 . . . . . 0.196 . 20 . 0.957 0.962
'X-RAY DIFFRACTION' 2.179 2.348 47 . 5 42 100.0000 . 0.234 . 0.313 . 0.225 . . . . . 0.209 . 20 . 0.919 0.863
'X-RAY DIFFRACTION' 2.348 2.563 31 . 2 27 93.5484 . 0.175 . 0.300 . 0.171 . . . . . 0.160 . 20 . 0.967 0.774
'X-RAY DIFFRACTION' 2.563 2.852 30 . 3 25 93.3333 . 0.207 . 0.417 . 0.192 . . . . . 0.191 . 20 . 0.982 0.965
'X-RAY DIFFRACTION' 2.852 3.267 26 . 3 20 88.4615 . 0.125 . 0.534 . 0.111 . . . . . 0.132 . 20 . 0.990 0.611
'X-RAY DIFFRACTION' 3.267 3.939 30 . 2 23 83.3333 . 0.143 . 0.073 . 0.165 . . . . . 0.163 . 20 . 0.980 0.993
'X-RAY DIFFRACTION' 3.939 5.329 26 . 3 21 92.3077 . 0.153 . 0.085 . 0.171 . . . . . 0.181 . 20 . 0.981 0.997
'X-RAY DIFFRACTION' 5.329 12.951 13 . 1 9 76.9231 . 0.358 . 0.470 . 0.355 . . . . . 0.290 . 20 . 0.961 .
#
_struct.entry_id 7LV2
_struct.title 'GSQASS segment from the Nucleoprotein of SARS-CoV-2, residues 179-184'
_struct.pdbx_model_details 'Amyloid Fibril'
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7LV2
_struct_keywords.text 'amyloid fibril, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code NCAP_SARS2
_struct_ref.pdbx_db_accession P0DTC9
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code GSQASS
_struct_ref.pdbx_align_begin 179
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7LV2
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P0DTC9
_struct_ref_seq.db_align_beg 179
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 184
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 179
_struct_ref_seq.pdbx_auth_seq_align_end 184
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details hexadecameric
_pdbx_struct_assembly.oligomeric_count 16
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B
1 2 A,B
1 3 A,B
1 4 A,B
1 5 A,B
1 6 A,B
1 7 A,B
1 8 A,B
1 9 A,B
1 10 A,B
1 11 A,B
1 12 A,B
1 13 A,B
1 14 A,B
1 15 A,B
1 16 A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details 'The biological unit is a fibril with indefinite length'
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -4.7700000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 4.7700000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_355 x-2,y,z 1.0000000000 0.0000000000 0.0000000000 -9.5400000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 9.5400000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 1_255 x-3,y,z 1.0000000000 0.0000000000 0.0000000000 -14.3100000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
7 'crystal symmetry operation' 1_855 x+3,y,z 1.0000000000 0.0000000000 0.0000000000 14.3100000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
8 'crystal symmetry operation' 1_155 x-4,y,z 1.0000000000 0.0000000000 0.0000000000 -19.0800000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
9 'crystal symmetry operation' 4_556 x+1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 2.3850000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
10 'crystal symmetry operation' 4_456 x-1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 -2.3850000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
11 'crystal symmetry operation' 4_656 x+3/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 7.1550000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
12 'crystal symmetry operation' 4_356 x-3/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 -7.1550000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
13 'crystal symmetry operation' 4_756 x+5/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 11.9250000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
14 'crystal symmetry operation' 4_256 x-5/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 -11.9250000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
15 'crystal symmetry operation' 4_156 x-7/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 -16.6950000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
16 'crystal symmetry operation' 4_856 x+7/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 16.6950000000 0.0000000000
-1.0000000000 0.0000000000 6.8000000000 0.0000000000 0.0000000000 -1.0000000000 42.4400000000
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLN N N N N 14
GLN CA C N S 15
GLN C C N N 16
GLN O O N N 17
GLN CB C N N 18
GLN CG C N N 19
GLN CD C N N 20
GLN OE1 O N N 21
GLN NE2 N N N 22
GLN OXT O N N 23
GLN H H N N 24
GLN H2 H N N 25
GLN HA H N N 26
GLN HB2 H N N 27
GLN HB3 H N N 28
GLN HG2 H N N 29
GLN HG3 H N N 30
GLN HE21 H N N 31
GLN HE22 H N N 32
GLN HXT H N N 33
GLY N N N N 34
GLY CA C N N 35
GLY C C N N 36
GLY O O N N 37
GLY OXT O N N 38
GLY H H N N 39
GLY H2 H N N 40
GLY HA2 H N N 41
GLY HA3 H N N 42
GLY HXT H N N 43
HOH O O N N 44
HOH H1 H N N 45
HOH H2 H N N 46
SER N N N N 47
SER CA C N S 48
SER C C N N 49
SER O O N N 50
SER CB C N N 51
SER OG O N N 52
SER OXT O N N 53
SER H H N N 54
SER H2 H N N 55
SER HA H N N 56
SER HB2 H N N 57
SER HB3 H N N 58
SER HG H N N 59
SER HXT H N N 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLN N CA sing N N 13
GLN N H sing N N 14
GLN N H2 sing N N 15
GLN CA C sing N N 16
GLN CA CB sing N N 17
GLN CA HA sing N N 18
GLN C O doub N N 19
GLN C OXT sing N N 20
GLN CB CG sing N N 21
GLN CB HB2 sing N N 22
GLN CB HB3 sing N N 23
GLN CG CD sing N N 24
GLN CG HG2 sing N N 25
GLN CG HG3 sing N N 26
GLN CD OE1 doub N N 27
GLN CD NE2 sing N N 28
GLN NE2 HE21 sing N N 29
GLN NE2 HE22 sing N N 30
GLN OXT HXT sing N N 31
GLY N CA sing N N 32
GLY N H sing N N 33
GLY N H2 sing N N 34
GLY CA C sing N N 35
GLY CA HA2 sing N N 36
GLY CA HA3 sing N N 37
GLY C O doub N N 38
GLY C OXT sing N N 39
GLY OXT HXT sing N N 40
HOH O H1 sing N N 41
HOH O H2 sing N N 42
SER N CA sing N N 43
SER N H sing N N 44
SER N H2 sing N N 45
SER CA C sing N N 46
SER CA CB sing N N 47
SER CA HA sing N N 48
SER C O doub N N 49
SER C OXT sing N N 50
SER CB OG sing N N 51
SER CB HB2 sing N N 52
SER CB HB3 sing N N 53
SER OG HG sing N N 54
SER OXT HXT sing N N 55
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1
'National Science Foundation (NSF, United States)' 'United States' 'MCB 1616265' 2
'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 'R01 AG048120' 3
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'ideal beta strand AAAAAA'
#
_atom_sites.entry_id 7LV2
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.209644
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.073529
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023563
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
_atom_type.scat_Cromer_Mann_a1
_atom_type.scat_Cromer_Mann_b1
_atom_type.scat_Cromer_Mann_a2
_atom_type.scat_Cromer_Mann_b2
_atom_type.scat_Cromer_Mann_a3
_atom_type.scat_Cromer_Mann_b3
_atom_type.scat_Cromer_Mann_a4
_atom_type.scat_Cromer_Mann_b4
C 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651
H 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800
N 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583
O 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
_atom_site.calc_flag
ATOM 1 N N A GLY A 1 1 ? 1.727 -0.260 30.523 0.500 12.120 0 179 GLY A N 1 ?
ATOM 2 N N B GLY A 1 1 ? 1.740 -1.479 29.974 0.500 12.120 0 179 GLY A N 1 ?
ATOM 3 C CA . GLY A 1 1 ? 2.602 -0.426 29.347 1.000 13.250 0 179 GLY A CA 1 ?
ATOM 4 C C . GLY A 1 1 ? 1.921 0.084 28.094 1.000 11.990 0 179 GLY A C 1 ?
ATOM 5 O O . GLY A 1 1 ? 0.682 0.069 28.046 1.000 11.200 0 179 GLY A O 1 ?
ATOM 6 N N . SER A 1 2 ? 2.707 0.596 27.154 1.000 10.220 0 180 SER A N 1 ?
ATOM 7 C CA . SER A 1 2 ? 2.179 1.238 25.932 1.000 9.000 0 180 SER A CA 1 ?
ATOM 8 C C . SER A 1 2 ? 2.783 0.518 24.719 1.000 9.410 0 180 SER A C 1 ?
ATOM 9 O O . SER A 1 2 ? 3.996 0.359 24.671 1.000 9.570 0 180 SER A O 1 ?
ATOM 10 C CB . SER A 1 2 ? 2.425 2.714 25.979 1.000 9.600 0 180 SER A CB 1 ?
ATOM 11 O OG . SER A 1 2 ? 1.670 3.324 27.034 1.000 13.580 0 180 SER A OG 1 ?
ATOM 12 N N . GLN A 1 3 ? 1.947 0.137 23.767 1.000 9.310 0 181 GLN A N 1 ?
ATOM 13 C CA . GLN A 1 3 ? 2.399 -0.393 22.477 1.000 8.630 0 181 GLN A CA 1 ?
ATOM 14 C C . GLN A 1 3 ? 1.820 0.472 21.347 1.000 7.250 0 181 GLN A C 1 ?
ATOM 15 O O . GLN A 1 3 ? 0.630 0.659 21.328 1.000 7.560 0 181 GLN A O 1 ?
ATOM 16 C CB . GLN A 1 3 ? 1.974 -1.847 22.346 1.000 11.110 0 181 GLN A CB 1 ?
ATOM 17 C CG . GLN A 1 3 ? 2.625 -2.722 23.397 1.000 12.400 0 181 GLN A CG 1 ?
ATOM 18 C CD . GLN A 1 3 ? 2.058 -4.113 23.460 1.000 12.120 0 181 GLN A CD 1 ?
ATOM 19 O OE1 . GLN A 1 3 ? 0.851 -4.292 23.426 1.000 14.300 0 181 GLN A OE1 1 ?
ATOM 20 N NE2 . GLN A 1 3 ? 2.922 -5.087 23.613 1.000 11.030 0 181 GLN A NE2 1 ?
ATOM 21 N N . ALA A 1 4 ? 2.649 0.903 20.414 1.000 7.440 0 182 ALA A N 1 ?
ATOM 22 C CA . ALA A 1 4 ? 2.228 1.761 19.289 1.000 6.260 0 182 ALA A CA 1 ?
ATOM 23 C C . ALA A 1 4 ? 2.885 1.218 18.016 1.000 8.240 0 182 ALA A C 1 ?
ATOM 24 O O . ALA A 1 4 ? 4.087 1.001 18.040 1.000 7.960 0 182 ALA A O 1 ?
ATOM 25 C CB . ALA A 1 4 ? 2.559 3.193 19.544 1.000 6.970 0 182 ALA A CB 1 ?
ATOM 26 N N . SER A 1 5 ? 2.065 0.891 17.012 1.000 10.120 0 183 SER A N 1 ?
ATOM 27 C CA A SER A 1 5 ? 2.470 0.285 15.714 0.400 9.710 0 183 SER A CA 1 ?
ATOM 28 C CA B SER A 1 5 ? 2.560 0.367 15.717 0.350 9.720 0 183 SER A CA 1 ?
ATOM 29 C CA C SER A 1 5 ? 2.660 0.367 15.717 0.250 9.720 0 183 SER A CA 1 ?
ATOM 30 C C . SER A 1 5 ? 1.915 1.147 14.577 1.000 11.640 0 183 SER A C 1 ?
ATOM 31 O O . SER A 1 5 ? 0.761 1.440 14.670 1.000 10.770 0 183 SER A O 1 ?
ATOM 32 C CB A SER A 1 5 ? 1.914 -1.101 15.579 0.400 10.820 0 183 SER A CB 1 ?
ATOM 33 C CB B SER A 1 5 ? 2.320 -1.086 15.541 0.350 10.930 0 183 SER A CB 1 ?
ATOM 34 C CB C SER A 1 5 ? 2.420 -1.086 15.541 0.250 10.930 0 183 SER A CB 1 ?
ATOM 35 O OG A SER A 1 5 ? 0.492 -1.070 15.592 0.400 10.850 0 183 SER A OG 1 ?
ATOM 36 O OG B SER A 1 5 ? 3.065 -1.548 14.428 0.350 10.720 0 183 SER A OG 1 ?
ATOM 37 O OG C SER A 1 5 ? 2.553 -1.734 16.794 0.250 10.720 0 183 SER A OG 1 ?
ATOM 38 N N . SER A 1 6 ? 2.706 1.447 13.557 1.000 11.650 0 184 SER A N 1 ?
ATOM 39 C CA . SER A 1 6 ? 2.258 2.282 12.419 1.000 16.170 0 184 SER A CA 1 ?
ATOM 40 C C . SER A 1 6 ? 2.975 1.826 11.145 1.000 20.750 0 184 SER A C 1 ?
ATOM 41 O O . SER A 1 6 ? 3.860 1.003 11.215 1.000 19.150 0 184 SER A O 1 ?
ATOM 42 C CB . SER A 1 6 ? 2.441 3.751 12.709 1.000 19.360 0 184 SER A CB 1 ?
ATOM 43 O OG . SER A 1 6 ? 3.819 4.121 12.717 1.000 20.230 0 184 SER A OG 1 ?
ATOM 44 O OXT . SER A 1 6 ? 2.673 2.284 10.047 1.000 27.810 0 184 SER A OXT 1 ?
HETATM 45 O O . HOH B 2 . ? 4.963 -1.766 12.617 1.000 39.430 0 201 HOH A O 1 ?
HETATM 46 O O . HOH B 2 . ? 0.118 -3.788 15.214 1.000 22.520 0 202 HOH A O 1 ?
HETATM 47 O O . HOH B 2 . ? 2.509 -4.484 16.374 1.000 17.360 0 203 HOH A O 1 ?
#