data_7LUX
#
_entry.id 7LUX
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7LUX pdb_00007lux 10.2210/pdb7lux/pdb
WWPDB D_1000255005 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2021-03-17
2 'Structure model' 1 1 2021-03-24
3 'Structure model' 1 2 2024-03-06
4 'Structure model' 1 3 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' citation
5 3 'Structure model' database_2
6 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.pdbx_database_id_PubMed'
2 2 'Structure model' '_citation.title'
3 3 'Structure model' '_citation.journal_id_ISSN'
4 3 'Structure model' '_database_2.pdbx_DOI'
5 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7LUX
_pdbx_database_status.recvd_initial_deposition_date 2021-02-23
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.details 'same peptide, different crystal form'
_pdbx_database_related.db_id 7LTU
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Lu, J.' 1 0000-0002-4941-3098
'Zee, C.-T.' 2 0000-0002-6630-706X
'Sawaya, M.R.' 3 0000-0003-0874-9043
'Rodriguez, J.A.' 4 0000-0001-8471-2504
'Eisenberg, D.S.' 5 0000-0003-2432-5419
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Biorxiv
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2692-8205
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume ?
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title 'Inhibition of amyloid formation of the Nucleoprotein of SARS-CoV-2.'
_citation.year 2021
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1101/2021.03.05.434000
_citation.pdbx_database_id_PubMed 33688654
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tayeb-Fligelman, E.' 1 ?
primary 'Cheng, X.' 2 ?
primary 'Tai, C.' 3 ?
primary 'Bowler, J.T.' 4 ?
primary 'Griner, S.' 5 ?
primary 'Sawaya, M.R.' 6 ?
primary 'Seidler, P.M.' 7 ?
primary 'Jiang, Y.X.' 8 ?
primary 'Lu, J.' 9 ?
primary 'Rosenberg, G.M.' 10 ?
primary 'Salwinski, L.' 11 ?
primary 'Abskharon, R.' 12 ?
primary 'Zee, C.T.' 13 ?
primary 'Hou, K.' 14 ?
primary 'Li, Y.' 15 ?
primary 'Boyer, D.R.' 16 ?
primary 'Murray, K.A.' 17 ?
primary 'Falcon, G.' 18 ?
primary 'Anderson, D.H.' 19 ?
primary 'Cascio, D.' 20 ?
primary 'Saelices, L.' 21 ?
primary 'Damoiseaux, R.' 22 ?
primary 'Guo, F.' 23 ?
primary 'Eisenberg, D.S.' 24 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Nucleoprotein AALALL' 570.722 1 ? ? ? ?
2 non-polymer nat 'TETRAETHYLENE GLYCOL' 194.226 2 ? ? ? ?
3 water nat water 18.015 1 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'N,Nucleocapsid protein,NC,Protein N'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code AALALL
_entity_poly.pdbx_seq_one_letter_code_can AALALL
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'TETRAETHYLENE GLYCOL' PG4
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ALA n
1 2 ALA n
1 3 LEU n
1 4 ALA n
1 5 LEU n
1 6 LEU n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Severe acute respiratory syndrome coronavirus 2'
_pdbx_entity_src_syn.organism_common_name '2019-nCoV, SARS-CoV-2'
_pdbx_entity_src_syn.ncbi_taxonomy_id 2697049
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
HOH non-polymer . WATER ? 'H2 O' 18.015
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ALA 1 217 217 ALA ALA A . n
A 1 2 ALA 2 218 218 ALA ALA A . n
A 1 3 LEU 3 219 219 LEU LEU A . n
A 1 4 ALA 4 220 220 ALA ALA A . n
A 1 5 LEU 5 221 221 LEU LEU A . n
A 1 6 LEU 6 222 222 LEU LEU A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PG4 1 301 229 PG4 PG4 A .
C 2 PG4 1 302 230 PG4 PG4 A .
D 3 HOH 1 401 231 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'Jan 31, 2020' 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 'Jan 31, 2020' 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 4
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 7LUX
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 44.460
_cell.length_a_esd ?
_cell.length_b 9.540
_cell.length_b_esd ?
_cell.length_c 10.950
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7LUX
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7LUX
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.03
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 39.54
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 9.5
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'polyethylene glycol 3000, CHES, pH 9.5'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2020-06-20
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator 'Si (111)'
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9792
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate 20.927
_reflns.entry_id 7LUX
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.300
_reflns.d_resolution_low 22.23
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1234
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 93.000
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 3.781
_reflns.pdbx_Rmerge_I_obs 0.105
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 5.940
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.843
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.121
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.997
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
1.300 1.360 ? 1.800 ? ? ? ? 139 84.800 ? ? ? ? 0.808 ? ? ? ? ? ? ? ? 3.957 ? ? ? ? 0.922 ? ? 1 1 0.544 ? ?
1.360 1.430 ? 1.610 ? ? ? ? 134 97.800 ? ? ? ? 1.030 ? ? ? ? ? ? ? ? 3.948 ? ? ? ? 1.196 ? ? 2 1 0.562 ? ?
1.430 1.500 ? 2.440 ? ? ? ? 130 95.600 ? ? ? ? 0.641 ? ? ? ? ? ? ? ? 3.754 ? ? ? ? 0.738 ? ? 3 1 0.868 ? ?
1.500 1.600 ? 3.580 ? ? ? ? 137 89.000 ? ? ? ? 0.450 ? ? ? ? ? ? ? ? 3.912 ? ? ? ? 0.520 ? ? 4 1 0.881 ? ?
1.600 1.710 ? 3.770 ? ? ? ? 115 100.000 ? ? ? ? 0.358 ? ? ? ? ? ? ? ? 4.035 ? ? ? ? 0.407 ? ? 5 1 0.930 ? ?
1.710 1.840 ? 5.390 ? ? ? ? 126 100.000 ? ? ? ? 0.254 ? ? ? ? ? ? ? ? 3.627 ? ? ? ? 0.293 ? ? 6 1 0.937 ? ?
1.840 2.020 ? 8.450 ? ? ? ? 95 88.800 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 3.747 ? ? ? ? 0.148 ? ? 7 1 0.991 ? ?
2.020 2.260 ? 10.010 ? ? ? ? 99 97.100 ? ? ? ? 0.103 ? ? ? ? ? ? ? ? 3.828 ? ? ? ? 0.117 ? ? 8 1 0.995 ? ?
2.260 2.610 ? 10.150 ? ? ? ? 89 95.700 ? ? ? ? 0.103 ? ? ? ? ? ? ? ? 3.674 ? ? ? ? 0.121 ? ? 9 1 0.997 ? ?
2.610 3.190 ? 12.100 ? ? ? ? 79 94.000 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 3.418 ? ? ? ? 0.101 ? ? 10 1 0.985 ? ?
3.190 4.510 ? 14.610 ? ? ? ? 56 84.800 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 3.554 ? ? ? ? 0.070 ? ? 11 1 0.998 ? ?
4.510 22.23 ? 13.600 ? ? ? ? 35 81.400 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 3.171 ? ? ? ? 0.075 ? ? 12 1 0.997 ? ?
#
_refine.aniso_B[1][1] 0.451
_refine.aniso_B[1][2] 0.000
_refine.aniso_B[1][3] 0.000
_refine.aniso_B[2][2] -0.870
_refine.aniso_B[2][3] -0.000
_refine.aniso_B[3][3] 0.419
_refine.B_iso_max ?
_refine.B_iso_mean 16.319
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.971
_refine.correlation_coeff_Fo_to_Fc_free 0.947
_refine.details 'Hydrogens have been added in their riding positions'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7LUX
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.303
_refine.ls_d_res_low 22.230
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 1234
_refine.ls_number_reflns_R_free 124
_refine.ls_number_reflns_R_work 1110
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 92.992
_refine.ls_percent_reflns_R_free 10.049
_refine.ls_R_factor_all 0.199
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_R_free 0.2360
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1948
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free 0.238
_refine.ls_wR_factor_R_work 0.205
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'MASK BULK SOLVENT'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'ideal beta strand AAAAA'
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.076
_refine.pdbx_overall_ESU_R_Free 0.080
_refine.pdbx_solvent_vdw_probe_radii 1.200
_refine.pdbx_solvent_ion_probe_radii 0.800
_refine.pdbx_solvent_shrinkage_radii 0.800
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 1.693
_refine.overall_SU_ML 0.061
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work 0.8549
_refine.pdbx_average_fsc_free 0.8374
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.details ?
_refine_hist.d_res_high 1.303
_refine_hist.d_res_low 22.230
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 67
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total ?
_refine_hist.pdbx_B_iso_mean_ligand ?
_refine_hist.pdbx_B_iso_mean_solvent ?
_refine_hist.pdbx_number_atoms_protein 40
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 26
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.006 0.014 63 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.001 0.017 84 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 1.179 1.619 75 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 0.869 1.565 194 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 7.102 5.000 5 ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? 5.506 15.000 6 ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? 0.045 0.200 6 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.006 0.020 43 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.000 0.020 5 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? 0.127 0.200 34 ? r_symmetry_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.085 0.200 14 ? r_nbtor_refined ? ?
'X-RAY DIFFRACTION' ? 0.086 0.200 31 ? r_symmetry_nbtor_other ? ?
'X-RAY DIFFRACTION' ? 0.017 0.200 1 ? r_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.008 0.200 1 ? r_symmetry_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 0.154 0.200 23 ? r_nbd_other ? ?
'X-RAY DIFFRACTION' ? 0.079 0.200 3 ? r_symmetry_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? 1.649 1.172 23 ? r_mcbond_it ? ?
'X-RAY DIFFRACTION' ? 1.458 1.129 22 ? r_mcbond_other ? ?
'X-RAY DIFFRACTION' ? 2.714 1.702 27 ? r_mcangle_it ? ?
'X-RAY DIFFRACTION' ? 2.735 1.736 28 ? r_mcangle_other ? ?
'X-RAY DIFFRACTION' ? 1.833 1.879 40 ? r_scbond_it ? ?
'X-RAY DIFFRACTION' ? 1.811 1.889 41 ? r_scbond_other ? ?
'X-RAY DIFFRACTION' ? 3.021 2.651 48 ? r_scangle_it ? ?
'X-RAY DIFFRACTION' ? 2.990 2.665 49 ? r_scangle_other ? ?
'X-RAY DIFFRACTION' ? 4.505 11.309 21 ? r_lrange_it ? ?
'X-RAY DIFFRACTION' ? 4.406 12.489 22 ? r_lrange_other ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 1.303 1.337 96 . 8 74 85.4167 . 0.411 . 0.515 . 0.397 . . . . . 0.375 . 20 . 0.521 0.587
'X-RAY DIFFRACTION' 1.337 1.374 99 . 9 78 87.8788 . 0.382 . 0.650 . 0.353 . . . . . 0.338 . 20 . 0.628 0.477
'X-RAY DIFFRACTION' 1.374 1.413 77 . 8 67 97.4026 . 0.351 . 0.813 . 0.284 . . . . . 0.268 . 20 . 0.724 0.556
'X-RAY DIFFRACTION' 1.413 1.456 87 . 8 74 94.2529 . 0.323 . 0.138 . 0.344 . . . . . 0.287 . 20 . 0.747 0.703
'X-RAY DIFFRACTION' 1.456 1.504 78 . 8 69 98.7179 . 0.343 . 0.238 . 0.358 . . . . . 0.351 . 20 . 0.755 0.926
'X-RAY DIFFRACTION' 1.504 1.557 89 . 8 75 93.2584 . 0.281 . 0.559 . 0.262 . . . . . 0.257 . 20 . 0.880 0.774
'X-RAY DIFFRACTION' 1.557 1.615 86 . 7 68 87.2093 . 0.274 . 0.361 . 0.264 . . . . . 0.227 . 20 . 0.874 0.884
'X-RAY DIFFRACTION' 1.615 1.681 64 . 7 57 100.0000 . 0.236 . 0.117 . 0.253 . . . . . 0.210 . 20 . 0.887 0.924
'X-RAY DIFFRACTION' 1.681 1.755 71 . 7 64 100.0000 . 0.208 . 0.342 . 0.195 . . . . . 0.178 . 20 . 0.946 0.891
'X-RAY DIFFRACTION' 1.755 1.840 84 . 8 76 100.0000 . 0.205 . 0.237 . 0.202 . . . . . 0.178 . 20 . 0.944 0.967
'X-RAY DIFFRACTION' 1.840 1.939 61 . 6 47 86.8852 . 0.163 . 0.142 . 0.167 . . . . . 0.156 . 20 . 0.965 0.994
'X-RAY DIFFRACTION' 1.939 2.055 64 . 6 54 93.7500 . 0.189 . 0.177 . 0.190 . . . . . 0.177 . 20 . 0.962 0.952
'X-RAY DIFFRACTION' 2.055 2.196 66 . 6 58 96.9697 . 0.151 . 0.126 . 0.153 . . . . . 0.158 . 20 . 0.982 0.973
'X-RAY DIFFRACTION' 2.196 2.370 58 . 6 50 96.5517 . 0.173 . 0.202 . 0.169 . . . . . 0.183 . 20 . 0.977 0.972
'X-RAY DIFFRACTION' 2.370 2.593 51 . 4 44 94.1176 . 0.142 . 0.097 . 0.146 . . . . . 0.164 . 20 . 0.976 0.961
'X-RAY DIFFRACTION' 2.593 2.894 52 . 5 44 94.2308 . 0.178 . 0.163 . 0.180 . . . . . 0.169 . 20 . 0.967 0.983
'X-RAY DIFFRACTION' 2.894 3.333 46 . 5 39 95.6522 . 0.159 . 0.321 . 0.145 . . . . . 0.159 . 20 . 0.984 0.920
'X-RAY DIFFRACTION' 3.333 4.059 38 . 3 26 76.3158 . 0.135 . 0.106 . 0.137 . . . . . 0.156 . 20 . 0.987 0.979
'X-RAY DIFFRACTION' 4.059 5.647 39 . 3 29 82.0513 . 0.137 . 0.125 . 0.139 . . . . . 0.191 . 20 . 0.987 0.998
'X-RAY DIFFRACTION' 5.647 22.230 21 . 2 17 90.4762 . 0.301 . 0.414 . 0.286 . . . . . 0.515 . 20 . 0.943 0.960
#
_struct.entry_id 7LUX
_struct.title 'AALALL segment from the Nucleoprotein of SARS-CoV-2, residues 217-222, crystal form 2'
_struct.pdbx_model_details 'Amyloid Fibril'
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7LUX
_struct_keywords.text 'amyloid fibril, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code NCAP_SARS2
_struct_ref.pdbx_db_accession P0DTC9
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code AALALL
_struct_ref.pdbx_align_begin 217
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7LUX
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P0DTC9
_struct_ref_seq.db_align_beg 217
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 222
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 217
_struct_ref_seq.pdbx_auth_seq_align_end 222
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details octadecameric
_pdbx_struct_assembly.oligomeric_count 18
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,C,D
1 2 A,B,C,D
1 3 A,B,C,D
1 4 A,B,C,D
1 5 A,B,C,D
1 6 A,B,C,D
1 7 A,B,C,D
1 8 A,B,C,D
1 9 A,B,C,D
1 10 A,B,C,D
1 11 A,B,C,D
1 12 A,B,C,D
1 13 A,B,C,D
1 14 A,B,C,D
1 15 A,B,C,D
1 16 A,B,C,D
1 17 A,B,C,D
1 18 A,B,C,D
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.5400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.5400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -19.0800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 19.0800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 10.9500000000
7 'crystal symmetry operation' 1_546 x,y-1,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.5400000000 0.0000000000 0.0000000000 1.0000000000 10.9500000000
8 'crystal symmetry operation' 1_566 x,y+1,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.5400000000 0.0000000000 0.0000000000 1.0000000000 10.9500000000
9 'crystal symmetry operation' 1_536 x,y-2,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -19.0800000000 0.0000000000 0.0000000000 1.0000000000 10.9500000000
10 'crystal symmetry operation' 1_576 x,y+2,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 19.0800000000 0.0000000000 0.0000000000 1.0000000000 10.9500000000
11 'crystal symmetry operation' 3_546 -x+1/2,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 -4.7700000000 0.0000000000 0.0000000000 -1.0000000000 10.9500000000
12 'crystal symmetry operation' 3_556 -x+1/2,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 4.7700000000 0.0000000000 0.0000000000 -1.0000000000 10.9500000000
13 'crystal symmetry operation' 3_536 -x+1/2,y-3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 -14.3100000000 0.0000000000 0.0000000000 -1.0000000000 10.9500000000
14 'crystal symmetry operation' 3_566 -x+1/2,y+3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 14.3100000000 0.0000000000 0.0000000000 -1.0000000000 10.9500000000
15 'crystal symmetry operation' 3_547 -x+1/2,y-1/2,-z+2 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 -4.7700000000 0.0000000000 0.0000000000 -1.0000000000 21.9000000000
16 'crystal symmetry operation' 3_557 -x+1/2,y+1/2,-z+2 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 4.7700000000 0.0000000000 0.0000000000 -1.0000000000 21.9000000000
17 'crystal symmetry operation' 3_537 -x+1/2,y-3/2,-z+2 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 -14.3100000000 0.0000000000 0.0000000000 -1.0000000000 21.9000000000
18 'crystal symmetry operation' 3_567 -x+1/2,y+3/2,-z+2 -1.0000000000 0.0000000000 0.0000000000 22.2300000000 0.0000000000
1.0000000000 0.0000000000 14.3100000000 0.0000000000 0.0000000000 -1.0000000000 21.9000000000
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A PG4 302 ? C PG4 .
2 1 A HOH 401 ? D HOH .
#
_pdbx_phasing_MR.entry_id 7LUX
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 1.300
_pdbx_phasing_MR.d_res_low_rotation 44.490
_pdbx_phasing_MR.d_res_high_translation 1.300
_pdbx_phasing_MR.d_res_low_translation 44.490
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
_pdbx_entry_details.entry_id 7LUX
_pdbx_entry_details.has_ligand_of_interest N
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
HOH O O N N 14
HOH H1 H N N 15
HOH H2 H N N 16
LEU N N N N 17
LEU CA C N S 18
LEU C C N N 19
LEU O O N N 20
LEU CB C N N 21
LEU CG C N N 22
LEU CD1 C N N 23
LEU CD2 C N N 24
LEU OXT O N N 25
LEU H H N N 26
LEU H2 H N N 27
LEU HA H N N 28
LEU HB2 H N N 29
LEU HB3 H N N 30
LEU HG H N N 31
LEU HD11 H N N 32
LEU HD12 H N N 33
LEU HD13 H N N 34
LEU HD21 H N N 35
LEU HD22 H N N 36
LEU HD23 H N N 37
LEU HXT H N N 38
PG4 O1 O N N 39
PG4 C1 C N N 40
PG4 C2 C N N 41
PG4 O2 O N N 42
PG4 C3 C N N 43
PG4 C4 C N N 44
PG4 O3 O N N 45
PG4 C5 C N N 46
PG4 C6 C N N 47
PG4 O4 O N N 48
PG4 C7 C N N 49
PG4 C8 C N N 50
PG4 O5 O N N 51
PG4 HO1 H N N 52
PG4 H11 H N N 53
PG4 H12 H N N 54
PG4 H21 H N N 55
PG4 H22 H N N 56
PG4 H31 H N N 57
PG4 H32 H N N 58
PG4 H41 H N N 59
PG4 H42 H N N 60
PG4 H51 H N N 61
PG4 H52 H N N 62
PG4 H61 H N N 63
PG4 H62 H N N 64
PG4 H71 H N N 65
PG4 H72 H N N 66
PG4 H81 H N N 67
PG4 H82 H N N 68
PG4 HO5 H N N 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
HOH O H1 sing N N 13
HOH O H2 sing N N 14
LEU N CA sing N N 15
LEU N H sing N N 16
LEU N H2 sing N N 17
LEU CA C sing N N 18
LEU CA CB sing N N 19
LEU CA HA sing N N 20
LEU C O doub N N 21
LEU C OXT sing N N 22
LEU CB CG sing N N 23
LEU CB HB2 sing N N 24
LEU CB HB3 sing N N 25
LEU CG CD1 sing N N 26
LEU CG CD2 sing N N 27
LEU CG HG sing N N 28
LEU CD1 HD11 sing N N 29
LEU CD1 HD12 sing N N 30
LEU CD1 HD13 sing N N 31
LEU CD2 HD21 sing N N 32
LEU CD2 HD22 sing N N 33
LEU CD2 HD23 sing N N 34
LEU OXT HXT sing N N 35
PG4 O1 C1 sing N N 36
PG4 O1 HO1 sing N N 37
PG4 C1 C2 sing N N 38
PG4 C1 H11 sing N N 39
PG4 C1 H12 sing N N 40
PG4 C2 O2 sing N N 41
PG4 C2 H21 sing N N 42
PG4 C2 H22 sing N N 43
PG4 O2 C3 sing N N 44
PG4 C3 C4 sing N N 45
PG4 C3 H31 sing N N 46
PG4 C3 H32 sing N N 47
PG4 C4 O3 sing N N 48
PG4 C4 H41 sing N N 49
PG4 C4 H42 sing N N 50
PG4 O3 C5 sing N N 51
PG4 C5 C6 sing N N 52
PG4 C5 H51 sing N N 53
PG4 C5 H52 sing N N 54
PG4 C6 O4 sing N N 55
PG4 C6 H61 sing N N 56
PG4 C6 H62 sing N N 57
PG4 O4 C7 sing N N 58
PG4 C7 C8 sing N N 59
PG4 C7 H71 sing N N 60
PG4 C7 H72 sing N N 61
PG4 C8 O5 sing N N 62
PG4 C8 H81 sing N N 63
PG4 C8 H82 sing N N 64
PG4 O5 HO5 sing N N 65
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1
'National Science Foundation (NSF, United States)' 'United States' 'MCB 1616265' 2
'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 'R01 AG048120' 3
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'ideal beta strand AAAAA'
#
_atom_sites.entry_id 7LUX
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.022492
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.104822
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.091324
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
_atom_type.scat_Cromer_Mann_a1
_atom_type.scat_Cromer_Mann_b1
_atom_type.scat_Cromer_Mann_a2
_atom_type.scat_Cromer_Mann_b2
_atom_type.scat_Cromer_Mann_a3
_atom_type.scat_Cromer_Mann_b3
_atom_type.scat_Cromer_Mann_a4
_atom_type.scat_Cromer_Mann_b4
C 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651
H 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800
N 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583
O 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
_atom_site.calc_flag
ATOM 1 N N . ALA A 1 1 ? 20.344 1.581 7.348 1.000 17.049 0 217 ALA A N 1 ?
ATOM 2 C CA . ALA A 1 1 ? 19.152 2.235 6.728 1.000 15.253 0 217 ALA A CA 1 ?
ATOM 3 C C . ALA A 1 1 ? 17.877 1.552 7.212 1.000 12.301 0 217 ALA A C 1 ?
ATOM 4 O O . ALA A 1 1 ? 17.885 0.334 7.450 1.000 14.076 0 217 ALA A O 1 ?
ATOM 5 C CB . ALA A 1 1 ? 19.217 2.172 5.225 1.000 15.596 0 217 ALA A CB 1 ?
ATOM 6 N N . ALA A 1 2 ? 16.799 2.316 7.284 1.000 11.133 0 218 ALA A N 1 ?
ATOM 7 C CA . ALA A 1 2 ? 15.474 1.829 7.705 1.000 9.992 0 218 ALA A CA 1 ?
ATOM 8 C C . ALA A 1 2 ? 14.436 2.472 6.794 1.000 10.404 0 218 ALA A C 1 ?
ATOM 9 O O . ALA A 1 2 ? 14.406 3.706 6.704 1.000 11.334 0 218 ALA A O 1 ?
ATOM 10 C CB . ALA A 1 2 ? 15.229 2.157 9.151 1.000 11.342 0 218 ALA A CB 1 ?
ATOM 11 N N . LEU A 1 3 ? 13.652 1.649 6.101 1.000 9.598 0 219 LEU A N 1 ?
ATOM 12 C CA . LEU A 1 3 ? 12.647 2.110 5.122 1.000 9.278 0 219 LEU A CA 1 ?
ATOM 13 C C . LEU A 1 3 ? 11.284 1.530 5.479 1.000 8.738 0 219 LEU A C 1 ?
ATOM 14 O O . LEU A 1 3 ? 11.206 0.328 5.805 1.000 9.810 0 219 LEU A O 1 ?
ATOM 15 C CB . LEU A 1 3 ? 13.044 1.622 3.725 1.000 9.953 0 219 LEU A CB 1 ?
ATOM 16 C CG . LEU A 1 3 ? 14.447 1.991 3.269 1.000 12.240 0 219 LEU A CG 1 ?
ATOM 17 C CD1 . LEU A 1 3 ? 14.745 1.312 1.937 1.000 13.578 0 219 LEU A CD1 1 ?
ATOM 18 C CD2 . LEU A 1 3 ? 14.588 3.494 3.158 1.000 14.648 0 219 LEU A CD2 1 ?
ATOM 19 N N . ALA A 1 4 ? 10.234 2.329 5.335 1.000 7.381 0 220 ALA A N 1 ?
ATOM 20 C CA . ALA A 1 4 ? 8.854 1.871 5.566 1.000 9.146 0 220 ALA A CA 1 ?
ATOM 21 C C . ALA A 1 4 ? 7.916 2.496 4.538 1.000 11.705 0 220 ALA A C 1 ?
ATOM 22 O O . ALA A 1 4 ? 7.992 3.704 4.293 1.000 12.550 0 220 ALA A O 1 ?
ATOM 23 C CB . ALA A 1 4 ? 8.445 2.151 7.000 1.000 9.969 0 220 ALA A CB 1 ?
ATOM 24 N N . LEU A 1 5 ? 7.094 1.656 3.920 1.000 9.942 0 221 LEU A N 1 ?
ATOM 25 C CA . LEU A 1 5 ? 5.916 2.066 3.127 1.000 10.790 0 221 LEU A CA 1 ?
ATOM 26 C C . LEU A 1 5 ? 4.676 1.539 3.853 1.000 11.249 0 221 LEU A C 1 ?
ATOM 27 O O . LEU A 1 5 ? 4.554 0.310 4.016 1.000 11.992 0 221 LEU A O 1 ?
ATOM 28 C CB . LEU A 1 5 ? 6.032 1.494 1.710 1.000 12.274 0 221 LEU A CB 1 ?
ATOM 29 C CG . LEU A 1 5 ? 7.274 1.895 0.921 1.000 14.811 0 221 LEU A CG 1 ?
ATOM 30 C CD1 . LEU A 1 5 ? 7.303 1.199 -0.439 1.000 15.628 0 221 LEU A CD1 1 ?
ATOM 31 C CD2 . LEU A 1 5 ? 7.329 3.402 0.730 1.000 15.918 0 221 LEU A CD2 1 ?
ATOM 32 N N . LEU A 1 6 ? 3.791 2.437 4.276 1.000 13.004 0 222 LEU A N 1 ?
ATOM 33 C CA . LEU A 1 6 ? 2.592 2.090 5.077 1.000 15.326 0 222 LEU A CA 1 ?
ATOM 34 C C . LEU A 1 6 ? 1.341 2.672 4.407 1.000 19.267 0 222 LEU A C 1 ?
ATOM 35 O O . LEU A 1 6 ? 1.360 3.639 3.613 1.000 20.132 0 222 LEU A O 1 ?
ATOM 36 C CB . LEU A 1 6 ? 2.752 2.648 6.494 1.000 18.341 0 222 LEU A CB 1 ?
ATOM 37 C CG . LEU A 1 6 ? 4.042 2.274 7.219 1.000 21.217 0 222 LEU A CG 1 ?
ATOM 38 C CD1 . LEU A 1 6 ? 4.222 3.119 8.470 1.000 25.985 0 222 LEU A CD1 1 ?
ATOM 39 C CD2 . LEU A 1 6 ? 4.062 0.793 7.564 1.000 25.298 0 222 LEU A CD2 1 ?
ATOM 40 O OXT . LEU A 1 6 ? 0.267 2.134 4.695 1.000 24.287 0 222 LEU A OXT 1 ?
HETATM 41 O O1 . PG4 B 2 . ? 10.630 0.432 11.561 0.250 19.640 0 301 PG4 A O1 1 ?
HETATM 42 C C1 . PG4 B 2 . ? 11.526 -0.069 10.589 0.500 20.092 0 301 PG4 A C1 1 ?
HETATM 43 C C2 . PG4 B 2 . ? 11.618 0.821 9.389 0.500 19.329 0 301 PG4 A C2 1 ?
HETATM 44 O O2 . PG4 B 2 . ? 11.743 2.175 9.808 0.500 18.992 0 301 PG4 A O2 1 ?
HETATM 45 C C3 . PG4 B 2 . ? 11.438 3.109 8.779 0.500 19.090 0 301 PG4 A C3 1 ?
HETATM 46 C C4 . PG4 B 2 . ? 12.078 4.423 9.086 0.500 19.376 0 301 PG4 A C4 1 ?
HETATM 47 O O3 . PG4 B 2 . ? 11.305 5.119 10.058 0.500 21.263 0 301 PG4 A O3 1 ?
HETATM 48 C C5 . PG4 B 2 . ? 11.431 4.570 11.365 0.500 21.901 0 301 PG4 A C5 1 ?
HETATM 49 C C6 . PG4 B 2 . ? 10.771 5.477 12.364 0.500 20.773 0 301 PG4 A C6 1 ?
HETATM 50 O O4 . PG4 B 2 . ? 11.215 6.816 12.167 0.500 20.150 0 301 PG4 A O4 1 ?
HETATM 51 C C7 . PG4 B 2 . ? 10.309 7.784 12.681 0.500 20.592 0 301 PG4 A C7 1 ?
HETATM 52 C C8 . PG4 B 2 . ? 10.977 9.115 12.757 0.500 20.505 0 301 PG4 A C8 1 ?
HETATM 53 O O5 . PG4 B 2 . ? 10.883 9.829 11.540 0.250 20.013 0 301 PG4 A O5 1 ?
HETATM 54 O O1 . PG4 C 2 . ? 21.156 0.183 10.707 0.500 20.237 0 302 PG4 A O1 1 ?
HETATM 55 C C1 . PG4 C 2 . ? 19.889 -0.389 10.484 0.500 19.750 0 302 PG4 A C1 1 ?
HETATM 56 C C2 . PG4 C 2 . ? 18.788 0.575 10.744 0.500 19.306 0 302 PG4 A C2 1 ?
HETATM 57 O O2 . PG4 C 2 . ? 19.166 1.866 10.286 0.500 23.062 0 302 PG4 A O2 1 ?
HETATM 58 C C3 . PG4 C 2 . ? 19.098 2.852 11.310 0.500 23.386 0 302 PG4 A C3 1 ?
HETATM 59 C C4 . PG4 C 2 . ? 19.373 4.204 10.730 0.500 23.401 0 302 PG4 A C4 1 ?
HETATM 60 O O3 . PG4 C 2 . ? 20.150 4.070 9.547 0.500 22.558 0 302 PG4 A O3 1 ?
HETATM 61 C C5 . PG4 C 2 . ? 21.063 5.145 9.366 0.500 23.112 0 302 PG4 A C5 1 ?
HETATM 62 C C6 . PG4 C 2 . ? 22.418 4.611 9.023 0.500 23.775 0 302 PG4 A C6 1 ?
HETATM 63 O O4 . PG4 C 2 . ? 23.412 5.506 9.507 0.500 22.610 0 302 PG4 A O4 1 ?
HETATM 64 C C7 . PG4 C 2 . ? 24.578 4.844 9.981 0.500 22.149 0 302 PG4 A C7 1 ?
HETATM 65 C C8 . PG4 C 2 . ? 25.702 5.823 10.087 0.500 22.104 0 302 PG4 A C8 1 ?
HETATM 66 O O5 . PG4 C 2 . ? 25.270 7.101 10.504 0.500 23.218 0 302 PG4 A O5 1 ?
HETATM 67 O O . HOH D 3 . ? -0.000 -0.000 6.365 0.500 23.365 0 401 HOH A O 1 ?
#