data_7EDV
#
_entry.id 7EDV
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7EDV pdb_00007edv 10.2210/pdb7edv/pdb
WWPDB D_1300021231 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2022-03-23
2 'Structure model' 1 1 2024-05-29
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
_pdbx_audit_revision_group.ordinal 1
_pdbx_audit_revision_group.revision_ordinal 2
_pdbx_audit_revision_group.data_content_type 'Structure model'
_pdbx_audit_revision_group.group 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7EDV
_pdbx_database_status.recvd_initial_deposition_date 2021-03-17
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Kondo, J.' 1 0000-0002-5682-3685
'Iwase, E.' 2 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country ?
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'To Be Published'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD 0353
_citation.journal_id_ISSN ?
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume ?
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title 'DNA duplex containing C-G-Au-C base triple'
_citation.year ?
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Kondo, J.' 1 0000-0002-5682-3685
primary 'Iwase, E.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*GP*AP*CP*CP*CP*CP*GP*GP*TP*CP*C)-3')
;
3624.356 1 ? ? ? ?
2 non-polymer syn 'GOLD ION' 196.967 1 ? ? ? ?
3 water nat water 18.015 37 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DC)(DC)(DC)(DC)(DG)(DG)(DT)(DC)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GGACCCCGGTCC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'GOLD ION' AU
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DA n
1 4 DC n
1 5 DC n
1 6 DC n
1 7 DC n
1 8 DG n
1 9 DG n
1 10 DT n
1 11 DC n
1 12 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 12
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
AU non-polymer . 'GOLD ION' ? 'Au 1' 196.967
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DC 4 4 4 DC DC A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DC 7 7 7 DC DC A . n
A 1 8 DG 8 8 8 DG DG A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DT 10 10 10 DT DT A . n
A 1 11 DC 11 11 11 DC DC A . n
A 1 12 DC 12 12 12 DC DC A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AU 1 101 1 AU AU A .
C 3 HOH 1 201 9 HOH HOH A .
C 3 HOH 2 202 7 HOH HOH A .
C 3 HOH 3 203 13 HOH HOH A .
C 3 HOH 4 204 33 HOH HOH A .
C 3 HOH 5 205 29 HOH HOH A .
C 3 HOH 6 206 22 HOH HOH A .
C 3 HOH 7 207 17 HOH HOH A .
C 3 HOH 8 208 16 HOH HOH A .
C 3 HOH 9 209 10 HOH HOH A .
C 3 HOH 10 210 27 HOH HOH A .
C 3 HOH 11 211 3 HOH HOH A .
C 3 HOH 12 212 4 HOH HOH A .
C 3 HOH 13 213 25 HOH HOH A .
C 3 HOH 14 214 20 HOH HOH A .
C 3 HOH 15 215 11 HOH HOH A .
C 3 HOH 16 216 5 HOH HOH A .
C 3 HOH 17 217 1 HOH HOH A .
C 3 HOH 18 218 26 HOH HOH A .
C 3 HOH 19 219 28 HOH HOH A .
C 3 HOH 20 220 30 HOH HOH A .
C 3 HOH 21 221 8 HOH HOH A .
C 3 HOH 22 222 15 HOH HOH A .
C 3 HOH 23 223 14 HOH HOH A .
C 3 HOH 24 224 21 HOH HOH A .
C 3 HOH 25 225 12 HOH HOH A .
C 3 HOH 26 226 6 HOH HOH A .
C 3 HOH 27 227 36 HOH HOH A .
C 3 HOH 28 228 18 HOH HOH A .
C 3 HOH 29 229 32 HOH HOH A .
C 3 HOH 30 230 35 HOH HOH A .
C 3 HOH 31 231 2 HOH HOH A .
C 3 HOH 32 232 31 HOH HOH A .
C 3 HOH 33 233 24 HOH HOH A .
C 3 HOH 34 234 19 HOH HOH A .
C 3 HOH 35 235 23 HOH HOH A .
C 3 HOH 36 236 37 HOH HOH A .
C 3 HOH 37 237 38 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 2
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . 4
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 7EDV
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 38.595
_cell.length_a_esd ?
_cell.length_b 38.595
_cell.length_b_esd ?
_cell.length_c 46.688
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7EDV
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7EDV
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.77
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 55.59
_exptl_crystal.description 'THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS.'
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'sodium cacodylate, MPD, spermine tetrahydrochloride, lithium chloride'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS3 6M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2017-12-03
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.98
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.98
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL-17A
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
#
_reflns.B_iso_Wilson_estimate 36.998
_reflns.entry_id 7EDV
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.010
_reflns.d_resolution_low 27.180
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 5183
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 100.000
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 10.203
_reflns.pdbx_Rmerge_I_obs 0.054
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 27.740
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 2.227
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.057
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 52884
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.999
_reflns.pdbx_CC_star ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_CC_star
_reflns_shell.pdbx_R_split
2.010 2.060 ? 9.100 ? ? ? ? 354 100.00 ? ? ? ? 0.290 ? ? ? ? ? ? ? ? 10.155 ? ? ? ? 0.306 ? ? 1 1 0.980 ? ?
2.060 2.120 ? 10.970 ? ? ? ? 377 100.000 ? ? ? ? 0.250 ? ? ? ? ? ? ? ? 10.106 ? ? ? ? 0.264 ? ? 2 1 0.980 ? ?
2.120 2.180 ? 13.750 ? ? ? ? 374 100.000 ? ? ? ? 0.184 ? ? ? ? ? ? ? ? 10.444 ? ? ? ? 0.193 ? ? 3 1 0.990 ? ?
2.180 2.250 ? 15.330 ? ? ? ? 370 100.000 ? ? ? ? 0.147 ? ? ? ? ? ? ? ? 10.430 ? ? ? ? 0.154 ? ? 4 1 0.995 ? ?
2.250 2.320 ? 17.060 ? ? ? ? 336 100.000 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 9.571 ? ? ? ? 0.136 ? ? 5 1 0.994 ? ?
2.320 2.400 ? 20.280 ? ? ? ? 337 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 10.086 ? ? ? ? 0.106 ? ? 6 1 0.996 ? ?
2.400 2.490 ? 24.460 ? ? ? ? 306 100.000 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 10.699 ? ? ? ? 0.088 ? ? 7 1 0.998 ? ?
2.490 2.590 ? 29.100 ? ? ? ? 307 100.000 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 11.055 ? ? ? ? 0.076 ? ? 8 1 0.997 ? ?
2.590 2.710 ? 30.220 ? ? ? ? 293 100.000 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 10.799 ? ? ? ? 0.076 ? ? 9 1 0.998 ? ?
2.710 2.840 ? 31.420 ? ? ? ? 281 100.000 ? ? ? ? 0.064 ? ? ? ? ? ? ? ? 10.779 ? ? ? ? 0.067 ? ? 10 1 0.998 ? ?
2.840 2.990 ? 37.300 ? ? ? ? 280 100.000 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 10.529 ? ? ? ? 0.063 ? ? 11 1 0.998 ? ?
2.990 3.180 ? 38.220 ? ? ? ? 264 100.000 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 10.057 ? ? ? ? 0.050 ? ? 12 1 0.999 ? ?
3.180 3.390 ? 40.880 ? ? ? ? 229 100.000 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 9.057 ? ? ? ? 0.049 ? ? 13 1 0.999 ? ?
3.390 3.670 ? 42.420 ? ? ? ? 210 100.000 ? ? ? ? 0.049 ? ? ? ? ? ? ? ? 9.238 ? ? ? ? 0.051 ? ? 14 1 0.999 ? ?
3.670 4.020 ? 45.460 ? ? ? ? 210 100.000 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 10.105 ? ? ? ? 0.049 ? ? 15 1 0.999 ? ?
4.020 4.490 ? 47.730 ? ? ? ? 189 100.000 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 10.550 ? ? ? ? 0.044 ? ? 16 1 0.998 ? ?
4.490 5.190 ? 44.960 ? ? ? ? 161 100.000 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 9.497 ? ? ? ? 0.047 ? ? 17 1 0.999 ? ?
5.190 6.350 ? 45.440 ? ? ? ? 140 100.000 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 9.236 ? ? ? ? 0.045 ? ? 18 1 0.999 ? ?
6.350 8.980 ? 46.950 ? ? ? ? 105 100.000 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 9.829 ? ? ? ? 0.050 ? ? 19 1 0.999 ? ?
8.980 27.180 ? 50.920 ? ? ? ? 60 96.800 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 10.850 ? ? ? ? 0.035 ? ? 20 1 1.000 ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 49.790
_refine.B_iso_mean 27.4125
_refine.B_iso_min 18.360
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7EDV
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.0100
_refine.ls_d_res_low 27.1800
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 5183
_refine.ls_number_reflns_R_free 538
_refine.ls_number_reflns_R_work 4645
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.8300
_refine.ls_percent_reflns_R_free 10.3800
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1672
_refine.ls_R_factor_R_free 0.1910
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1644
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.450
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct SAD
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 20.6300
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.1700
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 2.0100
_refine_hist.d_res_low 27.1800
_refine_hist.number_atoms_solvent 37
_refine_hist.number_atoms_total 278
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 12
_refine_hist.pdbx_B_iso_mean_ligand 24.96
_refine_hist.pdbx_B_iso_mean_solvent 34.09
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 240
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 2.0100 2.2100 1286 . 132 1154 99.0000 . . . 0.2561 0.0000 0.2183 . . . . . . . 4 . . .
'X-RAY DIFFRACTION' 2.2100 2.5300 1289 . 130 1159 100.0000 . . . 0.2195 0.0000 0.1895 . . . . . . . 4 . . .
'X-RAY DIFFRACTION' 2.5300 3.1800 1304 . 138 1166 100.0000 . . . 0.2373 0.0000 0.1845 . . . . . . . 4 . . .
'X-RAY DIFFRACTION' 3.1900 27.1800 1304 . 138 1166 100.0000 . . . 0.1496 0.0000 0.1370 . . . . . . . 4 . . .
#
_struct.entry_id 7EDV
_struct.title 'DNA duplex containing C-G-Au-C base triple'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7EDV
_struct_keywords.text 'Metal-mediated base pair, Gold, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 7EDV
_struct_ref.pdbx_db_accession 7EDV
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 7EDV
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 12
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 7EDV
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 12
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 12
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1430 ?
1 MORE -14 ?
1 'SSA (A^2)' 4210 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 6_553 -x,-x+y,-z-5/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038
0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -77.8133333333
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DC 6 O2 ? ? ? 1_555 B AU . AU ? ? A DC 6 A AU 101 1_555 ? ? ? ? ? ? ? 2.748 ? ?
metalc2 metalc ? ? A DC 6 N3 ? ? ? 1_555 B AU . AU ? ? A DC 6 A AU 101 1_555 ? ? ? ? ? ? ? 1.916 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 1 A DC 12 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 1 A DC 12 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 1 A DC 12 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 2 A DC 11 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 2 A DC 11 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 2 A DC 11 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 10 N3 ? ? A DA 3 A DT 10 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 3 A DT 10 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 4 A DG 9 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 4 A DG 9 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 5 A DG 8 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 5 A DG 8 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 5 A DG 8 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 6 A DG 8 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ?
hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 7 A DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ?
hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 8 A DC 5 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 8 A DC 5 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 8 A DC 5 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 8 A DC 6 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 8 A DC 6 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 8 A DC 6 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 9 A DC 4 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 9 A DC 4 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 9 A DC 4 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog26 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 10 A DA 3 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog27 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 10 A DA 3 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog28 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 11 A DG 2 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog29 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 11 A DG 2 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog30 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 11 A DG 2 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog31 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 12 A DG 1 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog32 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 12 A DG 1 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog33 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 12 A DG 1 6_553 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
_pdbx_struct_conn_angle.id 1
_pdbx_struct_conn_angle.ptnr1_label_atom_id O2
_pdbx_struct_conn_angle.ptnr1_label_alt_id ?
_pdbx_struct_conn_angle.ptnr1_label_asym_id A
_pdbx_struct_conn_angle.ptnr1_label_comp_id DC
_pdbx_struct_conn_angle.ptnr1_label_seq_id 6
_pdbx_struct_conn_angle.ptnr1_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr1_auth_asym_id A
_pdbx_struct_conn_angle.ptnr1_auth_comp_id DC
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 6
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr1_symmetry 1_555
_pdbx_struct_conn_angle.ptnr2_label_atom_id AU
_pdbx_struct_conn_angle.ptnr2_label_alt_id ?
_pdbx_struct_conn_angle.ptnr2_label_asym_id B
_pdbx_struct_conn_angle.ptnr2_label_comp_id AU
_pdbx_struct_conn_angle.ptnr2_label_seq_id .
_pdbx_struct_conn_angle.ptnr2_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr2_auth_asym_id A
_pdbx_struct_conn_angle.ptnr2_auth_comp_id AU
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 101
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr2_symmetry 1_555
_pdbx_struct_conn_angle.ptnr3_label_atom_id N3
_pdbx_struct_conn_angle.ptnr3_label_alt_id ?
_pdbx_struct_conn_angle.ptnr3_label_asym_id A
_pdbx_struct_conn_angle.ptnr3_label_comp_id DC
_pdbx_struct_conn_angle.ptnr3_label_seq_id 6
_pdbx_struct_conn_angle.ptnr3_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr3_auth_asym_id A
_pdbx_struct_conn_angle.ptnr3_auth_comp_id DC
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 6
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr3_symmetry 1_555
_pdbx_struct_conn_angle.value 54.3
_pdbx_struct_conn_angle.value_esd ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 N7
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 DG
_pdbx_validate_close_contact.auth_seq_id_1 8
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 AU
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 AU
_pdbx_validate_close_contact.auth_seq_id_2 101
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 1.76
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 229
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
_pdbx_entry_details.entry_id 7EDV
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
AU AU AU N N 1
DA OP3 O N N 2
DA P P N N 3
DA OP1 O N N 4
DA OP2 O N N 5
DA "O5'" O N N 6
DA "C5'" C N N 7
DA "C4'" C N R 8
DA "O4'" O N N 9
DA "C3'" C N S 10
DA "O3'" O N N 11
DA "C2'" C N N 12
DA "C1'" C N R 13
DA N9 N Y N 14
DA C8 C Y N 15
DA N7 N Y N 16
DA C5 C Y N 17
DA C6 C Y N 18
DA N6 N N N 19
DA N1 N Y N 20
DA C2 C Y N 21
DA N3 N Y N 22
DA C4 C Y N 23
DA HOP3 H N N 24
DA HOP2 H N N 25
DA "H5'" H N N 26
DA "H5''" H N N 27
DA "H4'" H N N 28
DA "H3'" H N N 29
DA "HO3'" H N N 30
DA "H2'" H N N 31
DA "H2''" H N N 32
DA "H1'" H N N 33
DA H8 H N N 34
DA H61 H N N 35
DA H62 H N N 36
DA H2 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
DT OP3 O N N 109
DT P P N N 110
DT OP1 O N N 111
DT OP2 O N N 112
DT "O5'" O N N 113
DT "C5'" C N N 114
DT "C4'" C N R 115
DT "O4'" O N N 116
DT "C3'" C N S 117
DT "O3'" O N N 118
DT "C2'" C N N 119
DT "C1'" C N R 120
DT N1 N N N 121
DT C2 C N N 122
DT O2 O N N 123
DT N3 N N N 124
DT C4 C N N 125
DT O4 O N N 126
DT C5 C N N 127
DT C7 C N N 128
DT C6 C N N 129
DT HOP3 H N N 130
DT HOP2 H N N 131
DT "H5'" H N N 132
DT "H5''" H N N 133
DT "H4'" H N N 134
DT "H3'" H N N 135
DT "HO3'" H N N 136
DT "H2'" H N N 137
DT "H2''" H N N 138
DT "H1'" H N N 139
DT H3 H N N 140
DT H71 H N N 141
DT H72 H N N 142
DT H73 H N N 143
DT H6 H N N 144
HOH O O N N 145
HOH H1 H N N 146
HOH H2 H N N 147
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
7EDV 'double helix'
7EDV 'a-form double helix'
7EDV 'triple helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 6 1_555 A DG 8 1_555 -0.066 3.724 -0.353 5.542 -16.010 -78.512 1 A_DC6:DG8_A A 6 ? A 8 ? ? ?
1 A DC 7 1_555 A DG 9 1_555 -0.274 3.423 -0.148 -3.511 -17.909 -65.540 2 A_DC7:DG9_A A 7 ? A 9 ? ? 3
1 A DG 1 1_555 A DC 12 6_553 -0.218 -0.201 0.202 -2.444 -6.548 -2.299 3 A_DG1:DC12_A A 1 ? A 12 ? 19 1
1 A DG 2 1_555 A DC 11 6_553 -0.291 -0.202 -0.276 -17.721 -14.303 0.918 4 A_DG2:DC11_A A 2 ? A 11 ? 19 1
1 A DA 3 1_555 A DT 10 6_553 0.202 -0.097 -0.303 -14.211 -1.077 -1.161 5 A_DA3:DT10_A A 3 ? A 10 ? 20 1
1 A DC 4 1_555 A DG 9 6_553 0.272 -0.147 -0.071 7.558 -8.336 1.651 6 A_DC4:DG9_A A 4 ? A 9 ? 19 1
1 A DC 5 1_555 A DG 8 6_553 0.297 -0.043 -0.245 10.203 -1.286 3.377 7 A_DC5:DG8_A A 5 ? A 8 ? 19 1
1 A DG 8 1_555 A DC 5 6_553 -0.297 -0.043 -0.245 -10.203 -1.286 3.377 8 A_DG8:DC5_A A 8 ? A 5 ? 19 1
1 A DG 9 1_555 A DC 4 6_553 -0.272 -0.147 -0.071 -7.558 -8.336 1.651 9 A_DG9:DC4_A A 9 ? A 4 ? 19 1
1 A DT 10 1_555 A DA 3 6_553 -0.202 -0.097 -0.303 14.211 -1.077 -1.161 10 A_DT10:DA3_A A 10 ? A 3 ? 20 1
1 A DC 11 1_555 A DG 2 6_553 0.291 -0.202 -0.276 17.721 -14.303 0.918 11 A_DC11:DG2_A A 11 ? A 2 ? 19 1
1 A DC 12 1_555 A DG 1 6_553 0.218 -0.201 0.202 2.444 -6.548 -2.299 12 A_DC12:DG1_A A 12 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 6 1_555 A DG 8 1_555 A DC 7 1_555 A DG 9 1_555 0.969 -2.034 3.158 4.063 1.122 33.005 -3.735 -1.033 3.183 1.966
-7.115 33.266 1 AA_DC6DC7:DG9DG8_AA A 6 ? A 8 ? A 7 ? A 9 ?
1 A DG 1 1_555 A DC 12 6_553 A DG 2 1_555 A DC 11 6_553 0.530 -1.621 3.682 8.058 4.903 35.232 -3.350 0.396 3.466 7.927
-13.026 36.434 2 AA_DG1DG2:DC11DC12_AA A 1 ? A 12 ? A 2 ? A 11 ?
1 A DG 2 1_555 A DC 11 6_553 A DA 3 1_555 A DT 10 6_553 0.009 -1.045 3.275 2.133 1.562 35.336 -1.945 0.297 3.222 2.569
-3.508 35.432 3 AA_DG2DA3:DT10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ?
1 A DA 3 1_555 A DT 10 6_553 A DC 4 1_555 A DG 9 6_553 0.629 -1.045 2.840 -1.342 6.522 29.105 -3.156 -1.454 2.521 12.769
2.627 29.841 4 AA_DA3DC4:DG9DT10_AA A 3 ? A 10 ? A 4 ? A 9 ?
1 A DC 4 1_555 A DG 9 6_553 A DC 5 1_555 A DG 8 6_553 -0.099 -2.129 3.268 -1.454 4.980 27.933 -5.420 -0.114 2.854 10.204
2.980 28.402 5 AA_DC4DC5:DG8DG9_AA A 4 ? A 9 ? A 5 ? A 8 ?
1 A DC 5 1_555 A DG 8 6_553 A DG 8 1_555 A DC 5 6_553 0.000 -5.114 3.312 0.000 15.549 108.398 -3.320 0.000 2.799 9.556
0.000 109.156 6 AA_DC5DG8:DC5DG8_AA A 5 ? A 8 ? A 8 ? A 5 ?
1 A DG 8 1_555 A DC 5 6_553 A DG 9 1_555 A DC 4 6_553 0.099 -2.129 3.268 1.454 4.980 27.933 -5.420 0.114 2.854 10.204
-2.980 28.402 7 AA_DG8DG9:DC4DC5_AA A 8 ? A 5 ? A 9 ? A 4 ?
1 A DG 9 1_555 A DC 4 6_553 A DT 10 1_555 A DA 3 6_553 -0.629 -1.045 2.840 1.342 6.522 29.105 -3.156 1.454 2.521 12.769
-2.627 29.841 8 AA_DG9DT10:DA3DC4_AA A 9 ? A 4 ? A 10 ? A 3 ?
1 A DT 10 1_555 A DA 3 6_553 A DC 11 1_555 A DG 2 6_553 -0.009 -1.045 3.275 -2.133 1.562 35.336 -1.945 -0.297 3.222 2.569
3.508 35.432 9 AA_DT10DC11:DG2DA3_AA A 10 ? A 3 ? A 11 ? A 2 ?
1 A DC 11 1_555 A DG 2 6_553 A DC 12 1_555 A DG 1 6_553 -0.530 -1.621 3.682 -8.058 4.903 35.232 -3.350 -0.396 3.466 7.927
13.026 36.434 10 AA_DC11DC12:DG1DG2_AA A 11 ? A 2 ? A 12 ? A 1 ?
#
_pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)'
_pdbx_audit_support.country Japan
_pdbx_audit_support.grant_number 24245037
_pdbx_audit_support.ordinal 1
#
_pdbx_entity_instance_feature.ordinal 1
_pdbx_entity_instance_feature.comp_id AU
_pdbx_entity_instance_feature.asym_id ?
_pdbx_entity_instance_feature.seq_num ?
_pdbx_entity_instance_feature.auth_comp_id AU
_pdbx_entity_instance_feature.auth_asym_id ?
_pdbx_entity_instance_feature.auth_seq_num ?
_pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION'
_pdbx_entity_instance_feature.details ?
#
_atom_sites.entry_id 7EDV
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.025910
_atom_sites.fract_transf_matrix[1][2] 0.014959
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.029918
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.021419
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
AU
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 0.939 -26.456 -44.162 1.00 29.47 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 0.895 -27.858 -43.873 1.00 26.09 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 1.940 -28.616 -44.684 1.00 25.75 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 1.650 -28.515 -46.107 1.00 23.37 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 3.354 -28.093 -44.560 1.00 24.21 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 3.961 -28.597 -43.375 1.00 24.71 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 3.974 -28.687 -45.813 1.00 23.08 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 2.868 -28.414 -46.831 1.00 22.93 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 2.968 -27.072 -47.405 1.00 22.12 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 2.112 -26.020 -47.201 1.00 22.06 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 2.464 -24.936 -47.824 1.00 20.90 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 3.644 -25.276 -48.465 1.00 22.83 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 4.487 -24.497 -49.282 1.00 21.87 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 4.350 -23.315 -49.608 1.00 24.92 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 5.579 -25.226 -49.747 1.00 22.42 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 5.826 -26.537 -49.451 1.00 21.77 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 6.928 -27.064 -50.002 1.00 21.79 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 5.040 -27.288 -48.682 1.00 21.55 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 3.972 -26.589 -48.222 1.00 21.05 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? 4.952 -27.660 -42.514 1.00 26.32 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? 5.188 -28.395 -41.253 1.00 24.65 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? 4.384 -26.282 -42.481 1.00 28.11 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? 6.276 -27.622 -43.394 1.00 24.33 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? 6.952 -28.839 -43.707 1.00 22.95 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? 8.006 -28.617 -44.771 1.00 25.30 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? 7.386 -28.138 -45.988 1.00 25.25 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? 9.052 -27.572 -44.437 1.00 26.21 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? 10.088 -28.152 -43.656 1.00 30.07 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? 9.549 -27.188 -45.828 1.00 25.67 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? 8.251 -27.204 -46.629 1.00 26.19 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? 7.595 -25.900 -46.663 1.00 23.36 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? 6.488 -25.507 -45.949 1.00 23.75 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? 6.140 -24.266 -46.171 1.00 25.26 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? 7.086 -23.808 -47.078 1.00 25.43 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? 7.227 -22.536 -47.687 1.00 25.54 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? 6.517 -21.531 -47.544 1.00 26.05 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? 8.324 -22.495 -48.538 1.00 24.19 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 9.174 -23.550 -48.776 1.00 27.07 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 10.171 -23.322 -49.640 1.00 24.04 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 9.051 -24.748 -48.215 1.00 25.51 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? 7.991 -24.803 -47.383 1.00 24.31 ? 2 DG A C4 1
ATOM 42 P P . DA A 1 3 ? 10.974 -27.240 -42.663 1.00 32.32 ? 3 DA A P 1
ATOM 43 O OP1 . DA A 1 3 ? 11.859 -28.175 -41.943 1.00 34.48 ? 3 DA A OP1 1
ATOM 44 O OP2 . DA A 1 3 ? 10.079 -26.317 -41.960 1.00 30.79 ? 3 DA A OP2 1
ATOM 45 O "O5'" . DA A 1 3 ? 11.846 -26.333 -43.634 1.00 27.85 ? 3 DA A "O5'" 1
ATOM 46 C "C5'" . DA A 1 3 ? 12.830 -26.911 -44.468 1.00 27.59 ? 3 DA A "C5'" 1
ATOM 47 C "C4'" . DA A 1 3 ? 13.438 -25.851 -45.373 1.00 30.30 ? 3 DA A "C4'" 1
ATOM 48 O "O4'" . DA A 1 3 ? 12.430 -25.339 -46.291 1.00 28.50 ? 3 DA A "O4'" 1
ATOM 49 C "C3'" . DA A 1 3 ? 13.945 -24.616 -44.654 1.00 28.63 ? 3 DA A "C3'" 1
ATOM 50 O "O3'" . DA A 1 3 ? 15.243 -24.843 -44.164 1.00 33.37 ? 3 DA A "O3'" 1
ATOM 51 C "C2'" . DA A 1 3 ? 13.959 -23.601 -45.788 1.00 24.98 ? 3 DA A "C2'" 1
ATOM 52 C "C1'" . DA A 1 3 ? 12.668 -23.959 -46.525 1.00 27.85 ? 3 DA A "C1'" 1
ATOM 53 N N9 . DA A 1 3 ? 11.504 -23.188 -46.080 1.00 25.86 ? 3 DA A N9 1
ATOM 54 C C8 . DA A 1 3 ? 10.555 -23.560 -45.177 1.00 28.06 ? 3 DA A C8 1
ATOM 55 N N7 . DA A 1 3 ? 9.621 -22.657 -44.991 1.00 26.08 ? 3 DA A N7 1
ATOM 56 C C5 . DA A 1 3 ? 9.987 -21.624 -45.830 1.00 25.62 ? 3 DA A C5 1
ATOM 57 C C6 . DA A 1 3 ? 9.412 -20.362 -46.102 1.00 24.70 ? 3 DA A C6 1
ATOM 58 N N6 . DA A 1 3 ? 8.298 -19.914 -45.531 1.00 24.05 ? 3 DA A N6 1
ATOM 59 N N1 . DA A 1 3 ? 10.035 -19.579 -46.988 1.00 25.91 ? 3 DA A N1 1
ATOM 60 C C2 . DA A 1 3 ? 11.150 -20.023 -47.564 1.00 27.30 ? 3 DA A C2 1
ATOM 61 N N3 . DA A 1 3 ? 11.778 -21.178 -47.394 1.00 25.23 ? 3 DA A N3 1
ATOM 62 C C4 . DA A 1 3 ? 11.140 -21.937 -46.507 1.00 24.94 ? 3 DA A C4 1
ATOM 63 P P . DC A 1 4 ? 15.756 -24.080 -42.852 1.00 30.76 ? 4 DC A P 1
ATOM 64 O OP1 . DC A 1 4 ? 17.053 -24.728 -42.549 1.00 31.33 ? 4 DC A OP1 1
ATOM 65 O OP2 . DC A 1 4 ? 14.678 -23.996 -41.848 1.00 27.12 ? 4 DC A OP2 1
ATOM 66 O "O5'" . DC A 1 4 ? 15.978 -22.571 -43.328 1.00 28.89 ? 4 DC A "O5'" 1
ATOM 67 C "C5'" . DC A 1 4 ? 17.046 -22.251 -44.197 1.00 28.98 ? 4 DC A "C5'" 1
ATOM 68 C "C4'" . DC A 1 4 ? 16.799 -20.915 -44.875 1.00 27.56 ? 4 DC A "C4'" 1
ATOM 69 O "O4'" . DC A 1 4 ? 15.488 -20.915 -45.489 1.00 27.44 ? 4 DC A "O4'" 1
ATOM 70 C "C3'" . DC A 1 4 ? 16.766 -19.709 -43.946 1.00 28.41 ? 4 DC A "C3'" 1
ATOM 71 O "O3'" . DC A 1 4 ? 18.100 -19.265 -43.669 1.00 31.43 ? 4 DC A "O3'" 1
ATOM 72 C "C2'" . DC A 1 4 ? 16.021 -18.700 -44.814 1.00 26.17 ? 4 DC A "C2'" 1
ATOM 73 C "C1'" . DC A 1 4 ? 14.976 -19.588 -45.492 1.00 25.87 ? 4 DC A "C1'" 1
ATOM 74 N N1 . DC A 1 4 ? 13.658 -19.549 -44.782 1.00 25.36 ? 4 DC A N1 1
ATOM 75 C C2 . DC A 1 4 ? 12.792 -18.498 -45.051 1.00 22.07 ? 4 DC A C2 1
ATOM 76 O O2 . DC A 1 4 ? 13.131 -17.652 -45.878 1.00 26.24 ? 4 DC A O2 1
ATOM 77 N N3 . DC A 1 4 ? 11.602 -18.438 -44.409 1.00 20.78 ? 4 DC A N3 1
ATOM 78 C C4 . DC A 1 4 ? 11.281 -19.361 -43.512 1.00 22.90 ? 4 DC A C4 1
ATOM 79 N N4 . DC A 1 4 ? 10.097 -19.244 -42.898 1.00 23.75 ? 4 DC A N4 1
ATOM 80 C C5 . DC A 1 4 ? 12.156 -20.446 -43.205 1.00 24.74 ? 4 DC A C5 1
ATOM 81 C C6 . DC A 1 4 ? 13.334 -20.497 -43.853 1.00 25.74 ? 4 DC A C6 1
ATOM 82 P P . DC A 1 5 ? 18.404 -18.345 -42.388 1.00 34.01 ? 5 DC A P 1
ATOM 83 O OP1 . DC A 1 5 ? 19.869 -18.156 -42.419 1.00 34.85 ? 5 DC A OP1 1
ATOM 84 O OP2 . DC A 1 5 ? 17.734 -18.926 -41.210 1.00 35.33 ? 5 DC A OP2 1
ATOM 85 O "O5'" . DC A 1 5 ? 17.669 -16.940 -42.687 1.00 27.98 ? 5 DC A "O5'" 1
ATOM 86 C "C5'" . DC A 1 5 ? 18.125 -16.112 -43.747 1.00 28.26 ? 5 DC A "C5'" 1
ATOM 87 C "C4'" . DC A 1 5 ? 17.256 -14.869 -43.893 1.00 27.33 ? 5 DC A "C4'" 1
ATOM 88 O "O4'" . DC A 1 5 ? 15.943 -15.226 -44.406 1.00 26.81 ? 5 DC A "O4'" 1
ATOM 89 C "C3'" . DC A 1 5 ? 16.933 -14.124 -42.614 1.00 27.22 ? 5 DC A "C3'" 1
ATOM 90 O "O3'" . DC A 1 5 ? 18.047 -13.334 -42.179 1.00 27.24 ? 5 DC A "O3'" 1
ATOM 91 C "C2'" . DC A 1 5 ? 15.785 -13.256 -43.102 1.00 23.68 ? 5 DC A "C2'" 1
ATOM 92 C "C1'" . DC A 1 5 ? 15.006 -14.265 -43.957 1.00 23.54 ? 5 DC A "C1'" 1
ATOM 93 N N1 . DC A 1 5 ? 13.923 -14.946 -43.194 1.00 23.14 ? 5 DC A N1 1
ATOM 94 C C2 . DC A 1 5 ? 12.715 -14.287 -43.040 1.00 22.12 ? 5 DC A C2 1
ATOM 95 O O2 . DC A 1 5 ? 12.584 -13.168 -43.553 1.00 21.24 ? 5 DC A O2 1
ATOM 96 N N3 . DC A 1 5 ? 11.719 -14.885 -42.338 1.00 20.54 ? 5 DC A N3 1
ATOM 97 C C4 . DC A 1 5 ? 11.918 -16.087 -41.793 1.00 22.32 ? 5 DC A C4 1
ATOM 98 N N4 . DC A 1 5 ? 10.909 -16.637 -41.115 1.00 20.48 ? 5 DC A N4 1
ATOM 99 C C5 . DC A 1 5 ? 13.164 -16.773 -41.922 1.00 21.98 ? 5 DC A C5 1
ATOM 100 C C6 . DC A 1 5 ? 14.133 -16.169 -42.621 1.00 22.06 ? 5 DC A C6 1
ATOM 101 P P . DC A 1 6 ? 18.198 -12.909 -40.638 1.00 27.32 ? 6 DC A P 1
ATOM 102 O OP1 . DC A 1 6 ? 19.555 -12.351 -40.500 1.00 31.98 ? 6 DC A OP1 1
ATOM 103 O OP2 . DC A 1 6 ? 17.797 -14.011 -39.725 1.00 29.25 ? 6 DC A OP2 1
ATOM 104 O "O5'" . DC A 1 6 ? 17.112 -11.756 -40.444 1.00 24.77 ? 6 DC A "O5'" 1
ATOM 105 C "C5'" . DC A 1 6 ? 17.234 -10.546 -41.169 1.00 24.64 ? 6 DC A "C5'" 1
ATOM 106 C "C4'" . DC A 1 6 ? 15.955 -9.723 -41.093 1.00 23.62 ? 6 DC A "C4'" 1
ATOM 107 O "O4'" . DC A 1 6 ? 14.839 -10.445 -41.684 1.00 23.42 ? 6 DC A "O4'" 1
ATOM 108 C "C3'" . DC A 1 6 ? 15.492 -9.364 -39.694 1.00 24.24 ? 6 DC A "C3'" 1
ATOM 109 O "O3'" . DC A 1 6 ? 16.241 -8.223 -39.212 1.00 26.06 ? 6 DC A "O3'" 1
ATOM 110 C "C2'" . DC A 1 6 ? 14.023 -9.036 -39.946 1.00 21.51 ? 6 DC A "C2'" 1
ATOM 111 C "C1'" . DC A 1 6 ? 13.645 -10.110 -40.982 1.00 23.56 ? 6 DC A "C1'" 1
ATOM 112 N N1 . DC A 1 6 ? 13.097 -11.336 -40.331 1.00 23.08 ? 6 DC A N1 1
ATOM 113 C C2 . DC A 1 6 ? 11.777 -11.324 -39.887 1.00 22.30 ? 6 DC A C2 1
ATOM 114 O O2 . DC A 1 6 ? 11.074 -10.321 -40.089 1.00 22.12 ? 6 DC A O2 1
ATOM 115 N N3 . DC A 1 6 ? 11.282 -12.413 -39.278 1.00 24.33 ? 6 DC A N3 1
ATOM 116 C C4 . DC A 1 6 ? 12.032 -13.475 -39.072 1.00 25.56 ? 6 DC A C4 1
ATOM 117 N N4 . DC A 1 6 ? 11.455 -14.511 -38.457 1.00 20.96 ? 6 DC A N4 1
ATOM 118 C C5 . DC A 1 6 ? 13.406 -13.525 -39.489 1.00 23.46 ? 6 DC A C5 1
ATOM 119 C C6 . DC A 1 6 ? 13.896 -12.429 -40.109 1.00 23.67 ? 6 DC A C6 1
ATOM 120 P P . DC A 1 7 ? 15.965 -7.596 -37.766 1.00 29.05 ? 7 DC A P 1
ATOM 121 O OP1 . DC A 1 7 ? 17.053 -6.660 -37.439 1.00 27.82 ? 7 DC A OP1 1
ATOM 122 O OP2 . DC A 1 7 ? 15.635 -8.688 -36.835 1.00 23.69 ? 7 DC A OP2 1
ATOM 123 O "O5'" . DC A 1 7 ? 14.652 -6.715 -37.985 1.00 29.61 ? 7 DC A "O5'" 1
ATOM 124 C "C5'" . DC A 1 7 ? 13.756 -6.504 -36.900 1.00 27.97 ? 7 DC A "C5'" 1
ATOM 125 C "C4'" . DC A 1 7 ? 12.322 -6.630 -37.374 1.00 27.50 ? 7 DC A "C4'" 1
ATOM 126 O "O4'" . DC A 1 7 ? 12.021 -8.031 -37.616 1.00 27.92 ? 7 DC A "O4'" 1
ATOM 127 C "C3'" . DC A 1 7 ? 11.265 -6.179 -36.380 1.00 27.65 ? 7 DC A "C3'" 1
ATOM 128 O "O3'" . DC A 1 7 ? 10.064 -5.897 -37.116 1.00 27.09 ? 7 DC A "O3'" 1
ATOM 129 C "C2'" . DC A 1 7 ? 11.121 -7.443 -35.534 1.00 24.90 ? 7 DC A "C2'" 1
ATOM 130 C "C1'" . DC A 1 7 ? 11.089 -8.482 -36.643 1.00 27.05 ? 7 DC A "C1'" 1
ATOM 131 N N1 . DC A 1 7 ? 11.451 -9.890 -36.232 1.00 22.52 ? 7 DC A N1 1
ATOM 132 C C2 . DC A 1 7 ? 10.471 -10.731 -35.684 1.00 22.74 ? 7 DC A C2 1
ATOM 133 O O2 . DC A 1 7 ? 9.345 -10.284 -35.484 1.00 21.85 ? 7 DC A O2 1
ATOM 134 N N3 . DC A 1 7 ? 10.804 -12.002 -35.351 1.00 21.53 ? 7 DC A N3 1
ATOM 135 C C4 . DC A 1 7 ? 12.046 -12.442 -35.558 1.00 24.67 ? 7 DC A C4 1
ATOM 136 N N4 . DC A 1 7 ? 12.334 -13.697 -35.209 1.00 21.72 ? 7 DC A N4 1
ATOM 137 C C5 . DC A 1 7 ? 13.048 -11.609 -36.138 1.00 25.09 ? 7 DC A C5 1
ATOM 138 C C6 . DC A 1 7 ? 12.706 -10.356 -36.456 1.00 22.66 ? 7 DC A C6 1
ATOM 139 P P . DG A 1 8 ? 8.931 -4.910 -36.542 1.00 28.83 ? 8 DG A P 1
ATOM 140 O OP1 . DG A 1 8 ? 8.387 -4.181 -37.705 1.00 32.05 ? 8 DG A OP1 1
ATOM 141 O OP2 . DG A 1 8 ? 9.473 -4.145 -35.394 1.00 30.54 ? 8 DG A OP2 1
ATOM 142 O "O5'" . DG A 1 8 ? 7.818 -5.929 -36.007 1.00 30.72 ? 8 DG A "O5'" 1
ATOM 143 C "C5'" . DG A 1 8 ? 7.339 -6.976 -36.872 1.00 25.39 ? 8 DG A "C5'" 1
ATOM 144 C "C4'" . DG A 1 8 ? 6.114 -7.656 -36.259 1.00 29.46 ? 8 DG A "C4'" 1
ATOM 145 O "O4'" . DG A 1 8 ? 5.608 -8.666 -37.175 1.00 29.27 ? 8 DG A "O4'" 1
ATOM 146 C "C3'" . DG A 1 8 ? 6.376 -8.396 -34.951 1.00 28.05 ? 8 DG A "C3'" 1
ATOM 147 O "O3'" . DG A 1 8 ? 6.227 -7.501 -33.843 1.00 26.88 ? 8 DG A "O3'" 1
ATOM 148 C "C2'" . DG A 1 8 ? 5.279 -9.462 -34.975 1.00 25.41 ? 8 DG A "C2'" 1
ATOM 149 C "C1'" . DG A 1 8 ? 5.259 -9.839 -36.454 1.00 29.56 ? 8 DG A "C1'" 1
ATOM 150 N N9 . DG A 1 8 ? 6.229 -10.860 -36.799 1.00 24.91 ? 8 DG A N9 1
ATOM 151 C C8 . DG A 1 8 ? 7.326 -10.689 -37.584 1.00 24.42 ? 8 DG A C8 1
ATOM 152 N N7 . DG A 1 8 ? 8.022 -11.760 -37.723 1.00 22.47 ? 8 DG A N7 1
ATOM 153 C C5 . DG A 1 8 ? 7.360 -12.714 -36.982 1.00 18.36 ? 8 DG A C5 1
ATOM 154 C C6 . DG A 1 8 ? 7.667 -14.072 -36.774 1.00 20.93 ? 8 DG A C6 1
ATOM 155 O O6 . DG A 1 8 ? 8.626 -14.702 -37.208 1.00 21.06 ? 8 DG A O6 1
ATOM 156 N N1 . DG A 1 8 ? 6.720 -14.704 -35.958 1.00 18.80 ? 8 DG A N1 1
ATOM 157 C C2 . DG A 1 8 ? 5.628 -14.068 -35.416 1.00 22.61 ? 8 DG A C2 1
ATOM 158 N N2 . DG A 1 8 ? 4.824 -14.811 -34.637 1.00 22.88 ? 8 DG A N2 1
ATOM 159 N N3 . DG A 1 8 ? 5.345 -12.784 -35.610 1.00 21.59 ? 8 DG A N3 1
ATOM 160 C C4 . DG A 1 8 ? 6.246 -12.180 -36.402 1.00 21.90 ? 8 DG A C4 1
ATOM 161 P P . DG A 1 9 ? 7.179 -7.600 -32.549 1.00 30.15 ? 9 DG A P 1
ATOM 162 O OP1 . DG A 1 9 ? 6.694 -6.533 -31.657 1.00 31.40 ? 9 DG A OP1 1
ATOM 163 O OP2 . DG A 1 9 ? 8.604 -7.645 -32.913 1.00 26.53 ? 9 DG A OP2 1
ATOM 164 O "O5'" . DG A 1 9 ? 6.823 -9.019 -31.903 1.00 26.06 ? 9 DG A "O5'" 1
ATOM 165 C "C5'" . DG A 1 9 ? 5.491 -9.254 -31.472 1.00 29.32 ? 9 DG A "C5'" 1
ATOM 166 C "C4'" . DG A 1 9 ? 5.295 -10.691 -31.057 1.00 27.24 ? 9 DG A "C4'" 1
ATOM 167 O "O4'" . DG A 1 9 ? 5.452 -11.570 -32.197 1.00 27.79 ? 9 DG A "O4'" 1
ATOM 168 C "C3'" . DG A 1 9 ? 6.285 -11.212 -30.033 1.00 25.26 ? 9 DG A "C3'" 1
ATOM 169 O "O3'" . DG A 1 9 ? 5.894 -10.765 -28.717 1.00 26.35 ? 9 DG A "O3'" 1
ATOM 170 C "C2'" . DG A 1 9 ? 6.099 -12.714 -30.205 1.00 22.79 ? 9 DG A "C2'" 1
ATOM 171 C "C1'" . DG A 1 9 ? 5.867 -12.845 -31.724 1.00 23.95 ? 9 DG A "C1'" 1
ATOM 172 N N9 . DG A 1 9 ? 7.069 -13.265 -32.446 1.00 22.84 ? 9 DG A N9 1
ATOM 173 C C8 . DG A 1 9 ? 7.925 -12.483 -33.178 1.00 21.22 ? 9 DG A C8 1
ATOM 174 N N7 . DG A 1 9 ? 8.921 -13.155 -33.690 1.00 21.62 ? 9 DG A N7 1
ATOM 175 C C5 . DG A 1 9 ? 8.712 -14.460 -33.269 1.00 21.55 ? 9 DG A C5 1
ATOM 176 C C6 . DG A 1 9 ? 9.460 -15.634 -33.515 1.00 21.28 ? 9 DG A C6 1
ATOM 177 O O6 . DG A 1 9 ? 10.503 -15.759 -34.176 1.00 22.17 ? 9 DG A O6 1
ATOM 178 N N1 . DG A 1 9 ? 8.892 -16.750 -32.882 1.00 20.92 ? 9 DG A N1 1
ATOM 179 C C2 . DG A 1 9 ? 7.735 -16.721 -32.131 1.00 22.74 ? 9 DG A C2 1
ATOM 180 N N2 . DG A 1 9 ? 7.324 -17.890 -31.603 1.00 21.61 ? 9 DG A N2 1
ATOM 181 N N3 . DG A 1 9 ? 7.032 -15.627 -31.908 1.00 20.89 ? 9 DG A N3 1
ATOM 182 C C4 . DG A 1 9 ? 7.575 -14.541 -32.503 1.00 22.12 ? 9 DG A C4 1
ATOM 183 P P . DT A 1 10 ? 6.913 -10.788 -27.472 1.00 33.09 ? 10 DT A P 1
ATOM 184 O OP1 . DT A 1 10 ? 6.246 -10.032 -26.399 1.00 34.85 ? 10 DT A OP1 1
ATOM 185 O OP2 . DT A 1 10 ? 8.270 -10.393 -27.885 1.00 32.50 ? 10 DT A OP2 1
ATOM 186 O "O5'" . DT A 1 10 ? 6.972 -12.308 -27.024 1.00 29.85 ? 10 DT A "O5'" 1
ATOM 187 C "C5'" . DT A 1 10 ? 5.798 -12.954 -26.611 1.00 25.55 ? 10 DT A "C5'" 1
ATOM 188 C "C4'" . DT A 1 10 ? 6.071 -14.415 -26.317 1.00 28.18 ? 10 DT A "C4'" 1
ATOM 189 O "O4'" . DT A 1 10 ? 6.687 -15.038 -27.475 1.00 26.65 ? 10 DT A "O4'" 1
ATOM 190 C "C3'" . DT A 1 10 ? 6.996 -14.685 -25.125 1.00 31.70 ? 10 DT A "C3'" 1
ATOM 191 O "O3'" . DT A 1 10 ? 6.442 -15.729 -24.327 1.00 33.84 ? 10 DT A "O3'" 1
ATOM 192 C "C2'" . DT A 1 10 ? 8.327 -15.103 -25.776 1.00 29.47 ? 10 DT A "C2'" 1
ATOM 193 C "C1'" . DT A 1 10 ? 7.876 -15.708 -27.106 1.00 27.41 ? 10 DT A "C1'" 1
ATOM 194 N N1 . DT A 1 10 ? 8.864 -15.526 -28.239 1.00 26.68 ? 10 DT A N1 1
ATOM 195 C C2 . DT A 1 10 ? 9.444 -16.633 -28.809 1.00 24.27 ? 10 DT A C2 1
ATOM 196 O O2 . DT A 1 10 ? 9.244 -17.764 -28.415 1.00 27.65 ? 10 DT A O2 1
ATOM 197 N N3 . DT A 1 10 ? 10.310 -16.367 -29.833 1.00 24.13 ? 10 DT A N3 1
ATOM 198 C C4 . DT A 1 10 ? 10.628 -15.132 -30.365 1.00 24.25 ? 10 DT A C4 1
ATOM 199 O O4 . DT A 1 10 ? 11.421 -15.004 -31.298 1.00 26.12 ? 10 DT A O4 1
ATOM 200 C C5 . DT A 1 10 ? 9.972 -14.007 -29.740 1.00 27.13 ? 10 DT A C5 1
ATOM 201 C C7 . DT A 1 10 ? 10.238 -12.616 -30.225 1.00 26.56 ? 10 DT A C7 1
ATOM 202 C C6 . DT A 1 10 ? 9.128 -14.254 -28.715 1.00 24.83 ? 10 DT A C6 1
ATOM 203 P P . DC A 1 11 ? 7.112 -16.139 -22.922 1.00 35.59 ? 11 DC A P 1
ATOM 204 O OP1 . DC A 1 11 ? 6.050 -16.856 -22.182 1.00 33.93 ? 11 DC A OP1 1
ATOM 205 O OP2 . DC A 1 11 ? 7.750 -14.960 -22.309 1.00 31.30 ? 11 DC A OP2 1
ATOM 206 O "O5'" . DC A 1 11 ? 8.238 -17.191 -23.337 1.00 33.36 ? 11 DC A "O5'" 1
ATOM 207 C "C5'" . DC A 1 11 ? 7.846 -18.509 -23.680 1.00 30.41 ? 11 DC A "C5'" 1
ATOM 208 C "C4'" . DC A 1 11 ? 9.047 -19.381 -24.009 1.00 35.22 ? 11 DC A "C4'" 1
ATOM 209 O "O4'" . DC A 1 11 ? 9.716 -18.884 -25.190 1.00 30.29 ? 11 DC A "O4'" 1
ATOM 210 C "C3'" . DC A 1 11 ? 10.115 -19.487 -22.918 1.00 31.38 ? 11 DC A "C3'" 1
ATOM 211 O "O3'" . DC A 1 11 ? 10.388 -20.857 -22.686 1.00 32.76 ? 11 DC A "O3'" 1
ATOM 212 C "C2'" . DC A 1 11 ? 11.329 -18.758 -23.527 1.00 29.82 ? 11 DC A "C2'" 1
ATOM 213 C "C1'" . DC A 1 11 ? 11.104 -18.981 -25.012 1.00 29.70 ? 11 DC A "C1'" 1
ATOM 214 N N1 . DC A 1 11 ? 11.762 -17.963 -25.907 1.00 28.54 ? 11 DC A N1 1
ATOM 215 C C2 . DC A 1 11 ? 12.603 -18.399 -26.931 1.00 26.04 ? 11 DC A C2 1
ATOM 216 O O2 . DC A 1 11 ? 12.802 -19.602 -27.061 1.00 25.49 ? 11 DC A O2 1
ATOM 217 N N3 . DC A 1 11 ? 13.193 -17.489 -27.741 1.00 26.15 ? 11 DC A N3 1
ATOM 218 C C4 . DC A 1 11 ? 12.949 -16.193 -27.576 1.00 25.51 ? 11 DC A C4 1
ATOM 219 N N4 . DC A 1 11 ? 13.547 -15.338 -28.413 1.00 22.18 ? 11 DC A N4 1
ATOM 220 C C5 . DC A 1 11 ? 12.077 -15.717 -26.548 1.00 27.53 ? 11 DC A C5 1
ATOM 221 C C6 . DC A 1 11 ? 11.509 -16.634 -25.740 1.00 27.59 ? 11 DC A C6 1
ATOM 222 P P . DC A 1 12 ? 11.495 -21.308 -21.612 1.00 36.59 ? 12 DC A P 1
ATOM 223 O OP1 . DC A 1 12 ? 11.071 -22.637 -21.129 1.00 36.09 ? 12 DC A OP1 1
ATOM 224 O OP2 . DC A 1 12 ? 11.711 -20.196 -20.651 1.00 32.33 ? 12 DC A OP2 1
ATOM 225 O "O5'" . DC A 1 12 ? 12.822 -21.520 -22.490 1.00 35.24 ? 12 DC A "O5'" 1
ATOM 226 C "C5'" . DC A 1 12 ? 12.844 -22.560 -23.485 1.00 34.07 ? 12 DC A "C5'" 1
ATOM 227 C "C4'" . DC A 1 12 ? 14.253 -22.835 -23.985 1.00 34.76 ? 12 DC A "C4'" 1
ATOM 228 O "O4'" . DC A 1 12 ? 14.685 -21.777 -24.888 1.00 33.00 ? 12 DC A "O4'" 1
ATOM 229 C "C3'" . DC A 1 12 ? 15.330 -22.922 -22.906 1.00 32.93 ? 12 DC A "C3'" 1
ATOM 230 O "O3'" . DC A 1 12 ? 16.259 -23.924 -23.274 1.00 36.52 ? 12 DC A "O3'" 1
ATOM 231 C "C2'" . DC A 1 12 ? 15.973 -21.531 -22.959 1.00 32.71 ? 12 DC A "C2'" 1
ATOM 232 C "C1'" . DC A 1 12 ? 15.940 -21.281 -24.459 1.00 31.28 ? 12 DC A "C1'" 1
ATOM 233 N N1 . DC A 1 12 ? 16.013 -19.857 -24.868 1.00 26.41 ? 12 DC A N1 1
ATOM 234 C C2 . DC A 1 12 ? 17.002 -19.451 -25.771 1.00 25.56 ? 12 DC A C2 1
ATOM 235 O O2 . DC A 1 12 ? 17.840 -20.278 -26.165 1.00 25.48 ? 12 DC A O2 1
ATOM 236 N N3 . DC A 1 12 ? 17.024 -18.161 -26.180 1.00 24.34 ? 12 DC A N3 1
ATOM 237 C C4 . DC A 1 12 ? 16.105 -17.302 -25.732 1.00 24.16 ? 12 DC A C4 1
ATOM 238 N N4 . DC A 1 12 ? 16.160 -16.044 -26.171 1.00 25.21 ? 12 DC A N4 1
ATOM 239 C C5 . DC A 1 12 ? 15.080 -17.702 -24.824 1.00 28.31 ? 12 DC A C5 1
ATOM 240 C C6 . DC A 1 12 ? 15.063 -18.985 -24.436 1.00 27.36 ? 12 DC A C6 1
HETATM 241 AU AU . AU B 2 . ? 9.551 -12.020 -38.558 0.56 24.96 ? 101 AU A AU 1
HETATM 242 O O . HOH C 3 . ? 9.620 -8.839 -29.175 1.00 36.90 ? 201 HOH A O 1
HETATM 243 O O . HOH C 3 . ? -0.876 -26.086 -45.744 1.00 30.35 ? 202 HOH A O 1
HETATM 244 O O . HOH C 3 . ? 14.762 -21.919 -40.334 1.00 36.85 ? 203 HOH A O 1
HETATM 245 O O . HOH C 3 . ? 16.989 -10.865 -36.407 1.00 32.49 ? 204 HOH A O 1
HETATM 246 O O . HOH C 3 . ? 3.038 -12.175 -34.557 1.00 28.79 ? 205 HOH A O 1
HETATM 247 O O . HOH C 3 . ? 13.980 -21.527 -48.831 1.00 30.39 ? 206 HOH A O 1
HETATM 248 O O . HOH C 3 . ? 10.061 -5.421 -32.748 1.00 33.14 ? 207 HOH A O 1
HETATM 249 O O . HOH C 3 . ? 10.000 -9.814 -32.235 1.00 31.80 ? 208 HOH A O 1
HETATM 250 O O . HOH C 3 . ? 8.187 -20.102 -27.667 1.00 32.82 ? 209 HOH A O 1
HETATM 251 O O . HOH C 3 . ? 14.249 -19.311 -20.810 1.00 34.79 ? 210 HOH A O 1
HETATM 252 O O . HOH C 3 . ? 8.876 -8.775 -39.686 1.00 26.19 ? 211 HOH A O 1
HETATM 253 O O . HOH C 3 . ? 10.627 -26.872 -48.952 1.00 27.98 ? 212 HOH A O 1
HETATM 254 O O . HOH C 3 . ? 21.633 -13.910 -41.452 1.00 36.40 ? 213 HOH A O 1
HETATM 255 O O . HOH C 3 . ? 19.294 -7.623 -36.092 1.00 36.46 ? 214 HOH A O 1
HETATM 256 O O . HOH C 3 . ? 14.672 -15.026 -35.948 1.00 30.41 ? 215 HOH A O 1
HETATM 257 O O . HOH C 3 . ? 14.799 -16.422 -47.751 1.00 28.67 ? 216 HOH A O 1
HETATM 258 O O . HOH C 3 . ? 3.613 -27.970 -38.981 1.00 33.74 ? 217 HOH A O 1
HETATM 259 O O . HOH C 3 . ? 2.269 -24.383 -42.040 1.00 36.92 ? 218 HOH A O 1
HETATM 260 O O . HOH C 3 . ? 3.967 -22.466 -45.501 1.00 34.63 ? 219 HOH A O 1
HETATM 261 O O . HOH C 3 . ? 19.756 -22.311 -25.269 1.00 36.15 ? 220 HOH A O 1
HETATM 262 O O . HOH C 3 . ? -0.453 -24.096 -43.047 1.00 29.99 ? 221 HOH A O 1
HETATM 263 O O . HOH C 3 . ? 16.301 -13.308 -37.270 1.00 27.37 ? 222 HOH A O 1
HETATM 264 O O . HOH C 3 . ? 13.341 -16.773 -38.040 1.00 30.07 ? 223 HOH A O 1
HETATM 265 O O . HOH C 3 . ? 6.087 -23.947 -41.679 1.00 36.37 ? 224 HOH A O 1
HETATM 266 O O . HOH C 3 . ? 8.009 -27.698 -40.115 1.00 36.00 ? 225 HOH A O 1
HETATM 267 O O . HOH C 3 . ? 6.986 -22.298 -43.320 1.00 31.52 ? 226 HOH A O 1
HETATM 268 O O . HOH C 3 . ? 14.490 -8.885 -33.897 1.00 39.88 ? 227 HOH A O 1
HETATM 269 O O . HOH C 3 . ? 9.722 -21.826 -41.098 1.00 28.27 ? 228 HOH A O 1
HETATM 270 O O . HOH C 3 . ? 10.984 -19.025 -38.907 0.50 32.60 ? 229 HOH A O 1
HETATM 271 O O . HOH C 3 . ? 9.427 -30.142 -47.903 1.00 38.05 ? 230 HOH A O 1
HETATM 272 O O . HOH C 3 . ? 12.261 -10.271 -32.707 1.00 28.11 ? 231 HOH A O 1
HETATM 273 O O . HOH C 3 . ? 15.510 -25.646 -48.287 1.00 40.15 ? 232 HOH A O 1
HETATM 274 O O . HOH C 3 . ? -2.372 -25.830 -42.500 1.00 38.93 ? 233 HOH A O 1
HETATM 275 O O . HOH C 3 . ? -1.266 -28.141 -41.400 1.00 36.65 ? 234 HOH A O 1
HETATM 276 O O . HOH C 3 . ? 19.584 -10.263 -37.006 1.00 38.13 ? 235 HOH A O 1
HETATM 277 O O . HOH C 3 . ? 4.333 -3.780 -34.974 1.00 49.79 ? 236 HOH A O 1
HETATM 278 O O . HOH C 3 . ? 16.538 -10.902 -33.337 1.00 43.59 ? 237 HOH A O 1
#