data_7C4U
#
_entry.id 7C4U
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.403
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7C4U pdb_00007c4u 10.2210/pdb7c4u/pdb
WWPDB D_1300017030 ? ?
EMDB EMD-30288 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
_pdbx_audit_revision_history.part_number
1 'Structure model' 1 0 2020-08-12 ?
2 'EM metadata' 1 0 2020-08-12 ?
3 Image 1 0 2020-08-12 ?
4 'Primary map' 1 0 2020-08-12 ?
5 'Structure model' 1 1 2020-08-19 ?
6 Image 1 0 2020-08-12 ?
7 'Primary map' 1 0 2020-08-12 ?
8 'Structure model' 1 2 2020-08-26 ?
9 Image 1 0 2020-08-12 ?
10 'Primary map' 1 0 2020-08-12 ?
11 'Structure model' 1 3 2021-03-17 ?
12 Image 1 0 2020-08-12 ?
13 'Primary map' 1 0 2020-08-12 ?
14 'Structure model' 1 4 2025-04-09 ?
15 'EM metadata' 1 1 2025-04-09 ?
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 2 'EM metadata' repository 'Initial release' ? ?
3 3 Image repository 'Initial release' ? ?
4 4 'Primary map' repository 'Initial release' ? ?
5 6 Image repository 'Initial release' ? ?
6 7 'Primary map' repository 'Initial release' ? ?
7 9 Image repository 'Initial release' ? ?
8 10 'Primary map' repository 'Initial release' ? ?
9 12 Image repository 'Initial release' ? ?
10 13 'Primary map' repository 'Initial release' ? ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 5 'Structure model' 'Data collection'
2 8 'Structure model' 'Data collection'
3 11 'Structure model' 'Database references'
4 14 'Structure model' 'Data collection'
5 14 'Structure model' 'Database references'
6 14 'Structure model' 'Derived calculations'
7 14 'Structure model' 'Refinement description'
8 14 'Structure model' 'Structure summary'
9 15 'EM metadata' 'Data processing'
10 15 'EM metadata' 'Database references'
11 15 'EM metadata' 'Experimental summary'
12 15 'EM metadata' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' pdbx_entity_branch_descriptor
2 5 'Structure model' pdbx_entity_branch_link
3 8 'Structure model' pdbx_entity_branch_descriptor
4 11 'Structure model' citation
5 11 'Structure model' citation_author
6 14 'Structure model' chem_comp_atom
7 14 'Structure model' chem_comp_bond
8 14 'Structure model' database_2
9 14 'Structure model' em_3d_fitting_list
10 14 'Structure model' em_admin
11 14 'Structure model' pdbx_entry_details
12 14 'Structure model' pdbx_initial_refinement_model
13 14 'Structure model' pdbx_modification_feature
14 14 'Structure model' struct_conn
15 15 'EM metadata' database_2
16 15 'EM metadata' em_3d_fitting_list
17 15 'EM metadata' em_admin
18 15 'EM metadata' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 11 'Structure model' '_citation.journal_volume'
2 11 'Structure model' '_citation.page_first'
3 11 'Structure model' '_citation.page_last'
4 11 'Structure model' '_citation_author.identifier_ORCID'
5 14 'Structure model' '_database_2.pdbx_DOI'
6 14 'Structure model' '_database_2.pdbx_database_accession'
7 14 'Structure model' '_em_3d_fitting_list.accession_code'
8 14 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id'
9 14 'Structure model' '_em_3d_fitting_list.source_name'
10 14 'Structure model' '_em_3d_fitting_list.type'
11 14 'Structure model' '_em_admin.last_update'
12 14 'Structure model' '_pdbx_entry_details.has_protein_modification'
13 14 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
14 15 'EM metadata' '_database_2.pdbx_DOI'
15 15 'EM metadata' '_database_2.pdbx_database_accession'
16 15 'EM metadata' '_em_3d_fitting_list.accession_code'
17 15 'EM metadata' '_em_3d_fitting_list.initial_refinement_model_id'
18 15 'EM metadata' '_em_3d_fitting_list.source_name'
19 15 'EM metadata' '_em_3d_fitting_list.type'
20 15 'EM metadata' '_em_admin.last_update'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7C4U
_pdbx_database_status.recvd_initial_deposition_date 2020-05-18
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
_pdbx_database_related.db_name EMDB
_pdbx_database_related.details 'MicroED structure of orthorhombic Vancomycin at 1.2 A resolution'
_pdbx_database_related.db_id EMD-30288
_pdbx_database_related.content_type 'associated EM volume'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Fan, Q.' 1 0000-0001-9133-8039
'Zhou, H.' 2 0000-0002-6267-1585
'Li, X.' 3 0000-0002-8451-9947
'Wang, J.' 4 0000-0002-1704-9922
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country GE
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Angew.Chem.Int.Ed.Engl.
_citation.journal_id_ASTM ACIEAY
_citation.journal_id_CSD 0179
_citation.journal_id_ISSN 1521-3773
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 59
_citation.language ?
_citation.page_first 15141
_citation.page_last 15146
_citation.title
'Precise Control Over Kinetics of Molecular Assembly: Production of Particles with Tunable Sizes and Crystalline Forms.'
_citation.year 2020
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1002/anie.202003922
_citation.pdbx_database_id_PubMed 32432368
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Fan, Q.' 1 ?
primary 'Li, L.' 2 ?
primary 'Xue, H.' 3 ?
primary 'Zhou, H.' 4 ?
primary 'Zhao, L.' 5 ?
primary 'Liu, J.' 6 ?
primary 'Mao, J.' 7 ?
primary 'Wu, S.' 8 ?
primary 'Zhang, S.' 9 ?
primary 'Wu, C.' 10 ?
primary 'Li, X.' 11 ?
primary 'Zhou, X.' 12 ?
primary 'Wang, J.' 13 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer nat Vancomycin 1149.977 2 ? ? ? ?
2 branched man 'vancosamine-(1-2)-beta-D-glucopyranose' 323.340 2 ? ? ? ?
3 non-polymer man 'CHLORIDE ION' 35.453 1 ? ? ? ?
4 water nat water 18.015 50 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)'
_entity_poly.pdbx_seq_one_letter_code_can XXNGGYX
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'CHLORIDE ION' CL
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MLU n
1 2 OMZ n
1 3 ASN n
1 4 GHP n
1 5 GHP n
1 6 OMY n
1 7 3FG n
#
_entity_src_nat.entity_id 1
_entity_src_nat.pdbx_src_id 1
_entity_src_nat.pdbx_alt_source_flag sample
_entity_src_nat.pdbx_beg_seq_num 1
_entity_src_nat.pdbx_end_seq_num 7
_entity_src_nat.common_name ?
_entity_src_nat.pdbx_organism_scientific 'Amycolatopsis orientalis'
_entity_src_nat.pdbx_ncbi_taxonomy_id 31958
_entity_src_nat.genus ?
_entity_src_nat.species ?
_entity_src_nat.strain ?
_entity_src_nat.tissue ?
_entity_src_nat.tissue_fraction ?
_entity_src_nat.pdbx_secretion ?
_entity_src_nat.pdbx_fragment ?
_entity_src_nat.pdbx_variant ?
_entity_src_nat.pdbx_cell_line ?
_entity_src_nat.pdbx_atcc ?
_entity_src_nat.pdbx_cellular_location ?
_entity_src_nat.pdbx_organ ?
_entity_src_nat.pdbx_organelle ?
_entity_src_nat.pdbx_cell ?
_entity_src_nat.pdbx_plasmid_name ?
_entity_src_nat.pdbx_plasmid_details ?
_entity_src_nat.details ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0
2 2 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 RER
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 BGC
_pdbx_entity_branch_link.atom_id_2 O2
_pdbx_entity_branch_link.leaving_atom_id_2 HO2
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose'
'C6 H12 O6' 180.156
CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453
GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162
HOH non-polymer . WATER ? 'H2 O' 18.015
MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199
OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633
OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633
RER 'L-saccharide, alpha linking' . vancosamine
'(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose' 'C7 H15 N O3' 161.199
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MLU 1 1 1 MLU MLU A . n
A 1 2 OMZ 2 2 2 OMZ OMZ A . n
A 1 3 ASN 3 3 3 ASN ASN A . n
A 1 4 GHP 4 4 4 GHP GHP A . n
A 1 5 GHP 5 5 5 GHP GHP A . n
A 1 6 OMY 6 6 6 OMY OMY A . n
A 1 7 3FG 7 7 7 3FG 3FG A . n
B 1 1 MLU 1 1 1 MLU MLU B . n
B 1 2 OMZ 2 2 2 OMZ OMZ B . n
B 1 3 ASN 3 3 3 ASN ASN B . n
B 1 4 GHP 4 4 4 GHP GHP B . n
B 1 5 GHP 5 5 5 GHP GHP B . n
B 1 6 OMY 6 6 6 OMY OMY B . n
B 1 7 3FG 7 7 7 3FG 3FG B . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 2 BGC 1 C BGC 1 A BGC 8 n
C 2 RER 2 C RER 2 A RER 9 n
D 2 BGC 1 D BGC 1 B BGC 8 n
D 2 RER 2 D RER 2 B RER 9 n
#
loop_
_pdbx_entity_instance_feature.ordinal
_pdbx_entity_instance_feature.comp_id
_pdbx_entity_instance_feature.asym_id
_pdbx_entity_instance_feature.seq_num
_pdbx_entity_instance_feature.auth_comp_id
_pdbx_entity_instance_feature.auth_asym_id
_pdbx_entity_instance_feature.auth_seq_num
_pdbx_entity_instance_feature.feature_type
_pdbx_entity_instance_feature.details
1 3FG ? ? 3FG ? ? 'SUBJECT OF INVESTIGATION' ?
2 BGC ? ? BGC ? ? 'SUBJECT OF INVESTIGATION' ?
3 CL ? ? CL ? ? 'SUBJECT OF INVESTIGATION' ?
4 GHP ? ? GHP ? ? 'SUBJECT OF INVESTIGATION' ?
5 MLU ? ? MLU ? ? 'SUBJECT OF INVESTIGATION' ?
6 OMY ? ? OMY ? ? 'SUBJECT OF INVESTIGATION' ?
7 OMZ ? ? OMZ ? ? 'SUBJECT OF INVESTIGATION' ?
8 RER ? ? RER ? ? 'SUBJECT OF INVESTIGATION' ?
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 CL 1 101 1 CL CL A .
F 4 HOH 1 201 49 HOH HOH A .
F 4 HOH 2 202 21 HOH HOH A .
F 4 HOH 3 203 1 HOH HOH A .
F 4 HOH 4 204 11 HOH HOH A .
F 4 HOH 5 205 5 HOH HOH A .
F 4 HOH 6 206 34 HOH HOH A .
F 4 HOH 7 207 47 HOH HOH A .
F 4 HOH 8 208 8 HOH HOH A .
F 4 HOH 9 209 29 HOH HOH A .
F 4 HOH 10 210 22 HOH HOH A .
F 4 HOH 11 211 26 HOH HOH A .
F 4 HOH 12 212 32 HOH HOH A .
F 4 HOH 13 213 48 HOH HOH A .
F 4 HOH 14 214 35 HOH HOH A .
F 4 HOH 15 215 12 HOH HOH A .
F 4 HOH 16 216 37 HOH HOH A .
F 4 HOH 17 217 25 HOH HOH A .
F 4 HOH 18 218 45 HOH HOH A .
G 4 HOH 1 201 10 HOH HOH B .
G 4 HOH 2 202 15 HOH HOH B .
G 4 HOH 3 203 24 HOH HOH B .
G 4 HOH 4 204 20 HOH HOH B .
G 4 HOH 5 205 28 HOH HOH B .
G 4 HOH 6 206 23 HOH HOH B .
G 4 HOH 7 207 17 HOH HOH B .
G 4 HOH 8 208 40 HOH HOH B .
G 4 HOH 9 209 3 HOH HOH B .
G 4 HOH 10 210 14 HOH HOH B .
G 4 HOH 11 211 2 HOH HOH B .
G 4 HOH 12 212 46 HOH HOH B .
G 4 HOH 13 213 30 HOH HOH B .
G 4 HOH 14 214 43 HOH HOH B .
G 4 HOH 15 215 19 HOH HOH B .
G 4 HOH 16 216 27 HOH HOH B .
G 4 HOH 17 217 33 HOH HOH B .
G 4 HOH 18 218 39 HOH HOH B .
G 4 HOH 19 219 7 HOH HOH B .
G 4 HOH 20 220 44 HOH HOH B .
G 4 HOH 21 221 38 HOH HOH B .
G 4 HOH 22 222 42 HOH HOH B .
G 4 HOH 23 223 41 HOH HOH B .
G 4 HOH 24 224 50 HOH HOH B .
G 4 HOH 25 225 36 HOH HOH B .
G 4 HOH 26 226 6 HOH HOH B .
G 4 HOH 27 227 4 HOH HOH B .
G 4 HOH 28 228 13 HOH HOH B .
G 4 HOH 29 229 9 HOH HOH B .
G 4 HOH 30 230 16 HOH HOH B .
G 4 HOH 31 231 18 HOH HOH B .
G 4 HOH 32 232 31 HOH HOH B .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ?
? ? 1.15_3459 1
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Apr. 1, 2019' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ?
PDB_EXTRACT ? ? package 3.25 2
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 7C4U
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 20.060
_cell.length_a_esd ?
_cell.length_b 33.020
_cell.length_b_esd ?
_cell.length_c 41.720
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7C4U
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 2 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7C4U
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.preparation ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
_diffrn.pdbx_serial_crystal_experiment ?
#
_diffrn_detector.details ?
_diffrn_detector.detector ?
_diffrn_detector.diffrn_id 1
_diffrn_detector.type ?
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2019-06-01
_diffrn_detector.pdbx_frequency ?
#
_reflns_shell.d_res_high 1.20
_reflns_shell.d_res_low 1.30
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 2.70
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all 1907
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all 75.6
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.740
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 7.45
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_CC_half 0.781
_reflns_shell.pdbx_CC_star ?
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 32.720
_refine.B_iso_mean 11.4269
_refine.B_iso_min 4.420
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7C4U
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.2000
_refine.ls_d_res_low 7.5710
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 6839
_refine.ls_number_reflns_R_free 342
_refine.ls_number_reflns_R_work 6497
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 75.1500
_refine.ls_percent_reflns_R_free 5.0000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2027
_refine.ls_R_factor_R_free 0.2159
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2020
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.350
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details 'Random selection'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 24.0000
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.1100
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.cycle_id final
_refine_hist.details ?
_refine_hist.d_res_high 1.20
_refine_hist.d_res_low 7.57
_refine_hist.number_atoms_solvent 50
_refine_hist.number_atoms_total 253
_refine_hist.number_reflns_all ?
_refine_hist.number_reflns_obs ?
_refine_hist.number_reflns_R_free ?
_refine_hist.number_reflns_R_work ?
_refine_hist.R_factor_all ?
_refine_hist.R_factor_obs ?
_refine_hist.R_factor_R_free ?
_refine_hist.R_factor_R_work ?
_refine_hist.pdbx_number_residues_total 14
_refine_hist.pdbx_B_iso_mean_ligand 10.18
_refine_hist.pdbx_B_iso_mean_solvent 18.86
_refine_hist.pdbx_number_atoms_protein ?
_refine_hist.pdbx_number_atoms_nucleic_acid ?
_refine_hist.pdbx_number_atoms_ligand 43
_refine_hist.pdbx_number_atoms_lipid ?
_refine_hist.pdbx_number_atoms_carb ?
_refine_hist.pdbx_pseudo_atom_details ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_R_complete
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'ELECTRON CRYSTALLOGRAPHY' 1.2 1.5097 . . 168 3202 76.0000 5 . . 0.2740 0.0000 0.2408 . . . . . . . . . . .
'ELECTRON CRYSTALLOGRAPHY' 1.5097 7.5709 . . 174 3295 75.0000 5 . . 0.1998 0.0000 0.1905 . . . . . . . . . . .
#
_struct.entry_id 7C4U
_struct.title 'MicroED structure of orthorhombic Vancomycin at 1.2 A resolution'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7C4U
_struct_keywords.text 'MicroED, Vancomycin, superbacteria, Antibiotic'
_struct_keywords.pdbx_keywords ANTIBIOTIC
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
E N N 3 ?
F N N 4 ?
G N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 7C4U
_struct_ref.pdbx_db_accession 7C4U
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 7C4U A 1 ? 7 ? 7C4U 1 ? 7 ? 1 7
2 1 7C4U B 1 ? 7 ? 7C4U 1 ? 7 ? 1 7
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_and_software_defined_assembly PISA monomeric 1
2 author_and_software_defined_assembly PISA monomeric 1
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 300 ?
1 MORE -7 ?
1 'SSA (A^2)' 1400 ?
2 'ABSA (A^2)' 200 ?
2 MORE 2 ?
2 'SSA (A^2)' 1410 ?
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,C,E,F
2 1 B,D,G
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.319 ? ?
covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.374 ? ?
covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.320 ? ?
covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.314 ? ?
covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.372 ? ?
covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 C BGC . C1 ? ? A GHP 4 C BGC 1 1_555 ? ? ? ? ? ? ? 1.371 sing ?
covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale9 covale one ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.487 ? ?
covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.318 ? ?
covale11 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale12 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.311 ? ?
covale13 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.369 ? ?
covale14 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.314 ? ?
covale15 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.309 ? ?
covale16 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.374 ? ?
covale17 covale one ? B GHP 4 O4 ? ? ? 1_555 D BGC . C1 ? ? B GHP 4 D BGC 1 1_555 ? ? ? ? ? ? ? 1.376 sing ?
covale18 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale19 covale one ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.490 ? ?
covale20 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.311 ? ?
covale21 covale both ? C BGC . O2 ? ? ? 1_555 C RER . C1 ? ? C BGC 1 C RER 2 1_555 ? ? ? ? ? ? ? 1.374 ? ?
covale22 covale both ? D BGC . O2 ? ? ? 1_555 D RER . C1 ? ? D BGC 1 D RER 2 1_555 ? ? ? ? ? ? ? 1.373 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 MLU A 1 ? . . . . MLU A 1 ? 1_555 . . . . . . . DLE 1 MLU Methylation 'Named protein modification'
2 OMZ A 2 ? . . . . OMZ A 2 ? 1_555 . . . . . . . DTY 1 OMZ Chlorination 'Named protein modification'
3 OMZ A 2 ? . . . . OMZ A 2 ? 1_555 . . . . . . . DTY 2 OMZ Hydroxylation 'Named protein modification'
4 OMY A 6 ? . . . . OMY A 6 ? 1_555 . . . . . . . TYR 1 OMY Hydroxylation 'Named protein modification'
5 OMY A 6 ? . . . . OMY A 6 ? 1_555 . . . . . . . TYR 2 OMY Chlorination 'Named protein modification'
6 MLU B 1 ? . . . . MLU B 1 ? 1_555 . . . . . . . DLE 1 MLU Methylation 'Named protein modification'
7 OMZ B 2 ? . . . . OMZ B 2 ? 1_555 . . . . . . . DTY 1 OMZ Chlorination 'Named protein modification'
8 OMZ B 2 ? . . . . OMZ B 2 ? 1_555 . . . . . . . DTY 2 OMZ Hydroxylation 'Named protein modification'
9 OMY B 6 ? . . . . OMY B 6 ? 1_555 . . . . . . . TYR 1 OMY Hydroxylation 'Named protein modification'
10 OMY B 6 ? . . . . OMY B 6 ? 1_555 . . . . . . . TYR 2 OMY Chlorination 'Named protein modification'
11 GHP A 4 ? . . . . GHP A 4 ? 1_555 . . . . . . . ? 1 GHP None 'Non-standard residue'
12 GHP A 5 ? . . . . GHP A 5 ? 1_555 . . . . . . . ? 1 GHP None 'Non-standard residue'
13 3FG A 7 ? . . . . 3FG A 7 ? 1_555 . . . . . . . ? 1 3FG None 'Non-standard residue'
14 GHP B 4 ? . . . . GHP B 4 ? 1_555 . . . . . . . ? 1 GHP None 'Non-standard residue'
15 GHP B 5 ? . . . . GHP B 5 ? 1_555 . . . . . . . ? 1 GHP None 'Non-standard residue'
16 3FG B 7 ? . . . . 3FG B 7 ? 1_555 . . . . . . . ? 1 3FG None 'Non-standard residue'
17 BGC C . ? GHP A 4 ? BGC C 1 ? 1_555 GHP A 4 ? 1_555 C1 O4 GHP 6 BGC None Carbohydrate
18 BGC D . ? GHP B 4 ? BGC D 1 ? 1_555 GHP B 4 ? 1_555 C1 O4 GHP 6 BGC None Carbohydrate
19 OMZ A 2 ? GHP A 4 ? OMZ A 2 ? 1_555 GHP A 4 ? 1_555 OH C5 . . . None 'Non-standard linkage'
20 GHP A 4 ? OMY A 6 ? GHP A 4 ? 1_555 OMY A 6 ? 1_555 C3 OCZ . . . None 'Non-standard linkage'
21 GHP A 5 ? 3FG A 7 ? GHP A 5 ? 1_555 3FG A 7 ? 1_555 C3 CG1 . . . None 'Non-standard linkage'
22 OMZ B 2 ? GHP B 4 ? OMZ B 2 ? 1_555 GHP B 4 ? 1_555 OH C5 . . . None 'Non-standard linkage'
23 GHP B 4 ? OMY B 6 ? GHP B 4 ? 1_555 OMY B 6 ? 1_555 C3 OCZ . . . None 'Non-standard linkage'
24 GHP B 5 ? 3FG B 7 ? GHP B 5 ? 1_555 3FG B 7 ? 1_555 C3 CG1 . . . None 'Non-standard linkage'
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 4.80
2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 -5.84
#
_pdbx_entry_details.entry_id 7C4U
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details
;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS
A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE
AND VANCOSAMINE.
HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE
SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER.
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest Y
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 CZ
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 OMZ
_pdbx_validate_close_contact.auth_seq_id_1 2
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 C5
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 GHP
_pdbx_validate_close_contact.auth_seq_id_2 4
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.13
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ASN
_pdbx_validate_torsion.auth_asym_id B
_pdbx_validate_torsion.auth_seq_id 3
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 177.98
_pdbx_validate_torsion.psi -144.77
#
_pdbx_molecule_features.prd_id PRD_000204
_pdbx_molecule_features.name VANCOMYCIN
_pdbx_molecule_features.type Glycopeptide
_pdbx_molecule_features.class Antibiotic
_pdbx_molecule_features.details
;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE,
GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8
AND 9) ON RESIDUE 4.
;
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_000204 A
1 PRD_000204 C
2 PRD_000204 B
2 PRD_000204 D
#
_em_3d_fitting.entry_id 7C4U
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol 'RIGID BODY FIT'
_em_3d_fitting.ref_space RECIPROCAL
_em_3d_fitting.target_criteria ?
_em_3d_fitting.method ?
#
_em_3d_fitting_list.3d_fitting_id 1
_em_3d_fitting_list.id 1
_em_3d_fitting_list.details ?
_em_3d_fitting_list.pdb_chain_id A
_em_3d_fitting_list.pdb_chain_residue_range 1-7
_em_3d_fitting_list.pdb_entry_id 1FVM
_em_3d_fitting_list.initial_refinement_model_id 1
_em_3d_fitting_list.chain_id ?
_em_3d_fitting_list.chain_residue_range ?
_em_3d_fitting_list.source_name PDB
_em_3d_fitting_list.type 'experimental model'
_em_3d_fitting_list.accession_code 1FVM
#
_em_3d_reconstruction.entry_id 7C4U
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution 1.2
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method CRYSTALLOGRAPHY
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 7.0
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name Vancomycin
_em_entity_assembly.source NATURAL
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 7C4U
_em_imaging.accelerating_voltage 200
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter 100
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen NITROGEN
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TECNAI F20'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs 2.7
_em_imaging.nominal_defocus_max ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER'
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_sample_support.id 1
_em_sample_support.specimen_id 1
_em_sample_support.details ?
_em_sample_support.grid_material COPPER
_em_sample_support.grid_mesh_size 200
_em_sample_support.grid_type Homemade
_em_sample_support.method ?
_em_sample_support.film_material ?
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature 298
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity 50
_em_vitrification.instrument 'FEI VITROBOT MARK IV'
_em_vitrification.entry_id 7C4U
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 7C4U
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
3FG N N N N 1
3FG OD1 O N N 2
3FG CD1 C Y N 3
3FG CG1 C Y N 4
3FG CZ C Y N 5
3FG CD2 C Y N 6
3FG OD2 O N N 7
3FG CG2 C Y N 8
3FG CB C Y N 9
3FG CA C N S 10
3FG C C N N 11
3FG O O N N 12
3FG OXT O N N 13
3FG H H N N 14
3FG H2 H N N 15
3FG HA H N N 16
3FG HD1 H N N 17
3FG HG1 H N N 18
3FG HZ H N N 19
3FG HD2 H N N 20
3FG HG2 H N N 21
3FG HXT H N N 22
ASN N N N N 23
ASN CA C N S 24
ASN C C N N 25
ASN O O N N 26
ASN CB C N N 27
ASN CG C N N 28
ASN OD1 O N N 29
ASN ND2 N N N 30
ASN OXT O N N 31
ASN H H N N 32
ASN H2 H N N 33
ASN HA H N N 34
ASN HB2 H N N 35
ASN HB3 H N N 36
ASN HD21 H N N 37
ASN HD22 H N N 38
ASN HXT H N N 39
BGC C2 C N R 40
BGC C3 C N S 41
BGC C4 C N S 42
BGC C5 C N R 43
BGC C6 C N N 44
BGC C1 C N R 45
BGC O1 O N N 46
BGC O2 O N N 47
BGC O3 O N N 48
BGC O4 O N N 49
BGC O5 O N N 50
BGC O6 O N N 51
BGC H2 H N N 52
BGC H3 H N N 53
BGC H4 H N N 54
BGC H5 H N N 55
BGC H61 H N N 56
BGC H62 H N N 57
BGC H1 H N N 58
BGC HO1 H N N 59
BGC HO2 H N N 60
BGC HO3 H N N 61
BGC HO4 H N N 62
BGC HO6 H N N 63
CL CL CL N N 64
GHP N N N N 65
GHP CA C N R 66
GHP C C N N 67
GHP O O N N 68
GHP OXT O N N 69
GHP C1 C Y N 70
GHP C2 C Y N 71
GHP C3 C Y N 72
GHP C4 C Y N 73
GHP O4 O N N 74
GHP C5 C Y N 75
GHP C6 C Y N 76
GHP H H N N 77
GHP H2 H N N 78
GHP HA H N N 79
GHP HXT H N N 80
GHP HC2 H N N 81
GHP H3 H N N 82
GHP HO4 H N N 83
GHP H5 H N N 84
GHP H6 H N N 85
HOH O O N N 86
HOH H1 H N N 87
HOH H2 H N N 88
MLU N N N N 89
MLU CN C N N 90
MLU CA C N R 91
MLU C C N N 92
MLU O O N N 93
MLU CB C N N 94
MLU CG C N N 95
MLU CD1 C N N 96
MLU CD2 C N N 97
MLU OXT O N N 98
MLU H H N N 99
MLU HCN1 H N N 100
MLU HCN2 H N N 101
MLU HCN3 H N N 102
MLU HA H N N 103
MLU HB2 H N N 104
MLU HB3 H N N 105
MLU HXT H N N 106
MLU HG H N N 107
MLU HD11 H N N 108
MLU HD12 H N N 109
MLU HD13 H N N 110
MLU HD21 H N N 111
MLU HD22 H N N 112
MLU HD23 H N N 113
OMY N N N N 114
OMY CA C N S 115
OMY OCZ O N N 116
OMY CE2 C Y N 117
OMY CE1 C Y N 118
OMY CZ C Y N 119
OMY CG C Y N 120
OMY CD2 C Y N 121
OMY CD1 C Y N 122
OMY CB C N R 123
OMY CL CL N N 124
OMY O O N N 125
OMY C C N N 126
OMY ODE O N N 127
OMY OXT O N N 128
OMY H H N N 129
OMY H2 H N N 130
OMY HA H N N 131
OMY HCZ H N N 132
OMY HE2 H N N 133
OMY HD2 H N N 134
OMY HD1 H N N 135
OMY HB H N N 136
OMY HXT H N N 137
OMY HDE H N N 138
OMZ N N N N 139
OMZ CA C N R 140
OMZ C C N N 141
OMZ O O N N 142
OMZ OXT O N N 143
OMZ CB C N R 144
OMZ OC O N N 145
OMZ CG C Y N 146
OMZ CD1 C Y N 147
OMZ CD2 C Y N 148
OMZ CE1 C Y N 149
OMZ CL CL N N 150
OMZ CE2 C Y N 151
OMZ CZ C Y N 152
OMZ OH O N N 153
OMZ H H N N 154
OMZ H2 H N N 155
OMZ HA H N N 156
OMZ HB H N N 157
OMZ HXT H N N 158
OMZ HC H N N 159
OMZ HD1 H N N 160
OMZ HD2 H N N 161
OMZ HE2 H N N 162
OMZ HH H N N 163
RER C1 C N R 164
RER C2 C N N 165
RER C3 C N S 166
RER N3 N N N 167
RER C3A C N N 168
RER C4 C N S 169
RER O4 O N N 170
RER C5 C N S 171
RER O5 O N N 172
RER C5A C N N 173
RER O1 O N N 174
RER H1 H N N 175
RER H21C H N N 176
RER H22C H N N 177
RER HO1 H N N 178
RER H31N H N N 179
RER H32N H N N 180
RER H3A1 H N N 181
RER H3A2 H N N 182
RER H3A3 H N N 183
RER H4 H N N 184
RER HO4 H N N 185
RER H5 H N N 186
RER H5A1 H N N 187
RER H5A2 H N N 188
RER H5A3 H N N 189
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3FG N CA sing N N 1
3FG OD1 CD1 sing N N 2
3FG CD1 CG1 sing Y N 3
3FG CD1 CZ doub Y N 4
3FG CG1 CB doub Y N 5
3FG CZ CD2 sing Y N 6
3FG CD2 OD2 sing N N 7
3FG CD2 CG2 doub Y N 8
3FG CG2 CB sing Y N 9
3FG CB CA sing N N 10
3FG CA C sing N N 11
3FG C O doub N N 12
3FG C OXT sing N N 13
3FG N H sing N N 14
3FG N H2 sing N N 15
3FG CA HA sing N N 16
3FG OD1 HD1 sing N N 17
3FG CG1 HG1 sing N N 18
3FG CZ HZ sing N N 19
3FG OD2 HD2 sing N N 20
3FG CG2 HG2 sing N N 21
3FG OXT HXT sing N N 22
ASN N CA sing N N 23
ASN N H sing N N 24
ASN N H2 sing N N 25
ASN CA C sing N N 26
ASN CA CB sing N N 27
ASN CA HA sing N N 28
ASN C O doub N N 29
ASN C OXT sing N N 30
ASN CB CG sing N N 31
ASN CB HB2 sing N N 32
ASN CB HB3 sing N N 33
ASN CG OD1 doub N N 34
ASN CG ND2 sing N N 35
ASN ND2 HD21 sing N N 36
ASN ND2 HD22 sing N N 37
ASN OXT HXT sing N N 38
BGC C2 C3 sing N N 39
BGC C2 C1 sing N N 40
BGC C2 O2 sing N N 41
BGC C2 H2 sing N N 42
BGC C3 C4 sing N N 43
BGC C3 O3 sing N N 44
BGC C3 H3 sing N N 45
BGC C4 C5 sing N N 46
BGC C4 O4 sing N N 47
BGC C4 H4 sing N N 48
BGC C5 C6 sing N N 49
BGC C5 O5 sing N N 50
BGC C5 H5 sing N N 51
BGC C6 O6 sing N N 52
BGC C6 H61 sing N N 53
BGC C6 H62 sing N N 54
BGC C1 O1 sing N N 55
BGC C1 O5 sing N N 56
BGC C1 H1 sing N N 57
BGC O1 HO1 sing N N 58
BGC O2 HO2 sing N N 59
BGC O3 HO3 sing N N 60
BGC O4 HO4 sing N N 61
BGC O6 HO6 sing N N 62
GHP N CA sing N N 63
GHP N H sing N N 64
GHP N H2 sing N N 65
GHP CA C sing N N 66
GHP CA C1 sing N N 67
GHP CA HA sing N N 68
GHP C O doub N N 69
GHP C OXT sing N N 70
GHP OXT HXT sing N N 71
GHP C1 C2 doub Y N 72
GHP C1 C6 sing Y N 73
GHP C2 C3 sing Y N 74
GHP C2 HC2 sing N N 75
GHP C3 C4 doub Y N 76
GHP C3 H3 sing N N 77
GHP C4 O4 sing N N 78
GHP C4 C5 sing Y N 79
GHP O4 HO4 sing N N 80
GHP C5 C6 doub Y N 81
GHP C5 H5 sing N N 82
GHP C6 H6 sing N N 83
HOH O H1 sing N N 84
HOH O H2 sing N N 85
MLU N CN sing N N 86
MLU N CA sing N N 87
MLU CA C sing N N 88
MLU CA CB sing N N 89
MLU C O doub N N 90
MLU C OXT sing N N 91
MLU CB CG sing N N 92
MLU CG CD1 sing N N 93
MLU CG CD2 sing N N 94
MLU N H sing N N 95
MLU CN HCN1 sing N N 96
MLU CN HCN2 sing N N 97
MLU CN HCN3 sing N N 98
MLU CA HA sing N N 99
MLU CB HB2 sing N N 100
MLU CB HB3 sing N N 101
MLU OXT HXT sing N N 102
MLU CG HG sing N N 103
MLU CD1 HD11 sing N N 104
MLU CD1 HD12 sing N N 105
MLU CD1 HD13 sing N N 106
MLU CD2 HD21 sing N N 107
MLU CD2 HD22 sing N N 108
MLU CD2 HD23 sing N N 109
OMY N CA sing N N 110
OMY OCZ CZ sing N N 111
OMY CZ CE2 sing Y N 112
OMY CZ CE1 doub Y N 113
OMY CE2 CD2 doub Y N 114
OMY CD2 CG sing Y N 115
OMY CG CD1 doub Y N 116
OMY CG CB sing N N 117
OMY CD1 CE1 sing Y N 118
OMY CE1 CL sing N N 119
OMY C O doub N N 120
OMY C CA sing N N 121
OMY C OXT sing N N 122
OMY CA CB sing N N 123
OMY CB ODE sing N N 124
OMY N H sing N N 125
OMY N H2 sing N N 126
OMY CA HA sing N N 127
OMY OCZ HCZ sing N N 128
OMY CE2 HE2 sing N N 129
OMY CD2 HD2 sing N N 130
OMY CD1 HD1 sing N N 131
OMY CB HB sing N N 132
OMY OXT HXT sing N N 133
OMY ODE HDE sing N N 134
OMZ N CA sing N N 135
OMZ CA C sing N N 136
OMZ CA CB sing N N 137
OMZ C O doub N N 138
OMZ C OXT sing N N 139
OMZ CL CE1 sing N N 140
OMZ CB OC sing N N 141
OMZ CB CG sing N N 142
OMZ CG CD1 doub Y N 143
OMZ CG CD2 sing Y N 144
OMZ CD1 CE1 sing Y N 145
OMZ CD2 CE2 doub Y N 146
OMZ CE1 CZ doub Y N 147
OMZ CE2 CZ sing Y N 148
OMZ CZ OH sing N N 149
OMZ N H sing N N 150
OMZ N H2 sing N N 151
OMZ CA HA sing N N 152
OMZ CB HB sing N N 153
OMZ OXT HXT sing N N 154
OMZ OC HC sing N N 155
OMZ CD1 HD1 sing N N 156
OMZ CD2 HD2 sing N N 157
OMZ CE2 HE2 sing N N 158
OMZ OH HH sing N N 159
RER C1 C2 sing N N 160
RER C1 O5 sing N N 161
RER C1 O1 sing N N 162
RER C2 C3 sing N N 163
RER C3 N3 sing N N 164
RER C3 C3A sing N N 165
RER C3 C4 sing N N 166
RER C4 O4 sing N N 167
RER C4 C5 sing N N 168
RER C5 O5 sing N N 169
RER C5 C5A sing N N 170
RER C1 H1 sing N N 171
RER C2 H21C sing N N 172
RER C2 H22C sing N N 173
RER O1 HO1 sing N N 174
RER N3 H31N sing N N 175
RER N3 H32N sing N N 176
RER C3A H3A1 sing N N 177
RER C3A H3A2 sing N N 178
RER C3A H3A3 sing N N 179
RER C4 H4 sing N N 180
RER O4 HO4 sing N N 181
RER C5 H5 sing N N 182
RER C5A H5A1 sing N N 183
RER C5A H5A2 sing N N 184
RER C5A H5A3 sing N N 185
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90.00
_em_3d_crystal_entity.angle_beta 90.00
_em_3d_crystal_entity.angle_gamma 90.00
_em_3d_crystal_entity.length_a 20.06
_em_3d_crystal_entity.length_b 33.02
_em_3d_crystal_entity.length_c 41.72
_em_3d_crystal_entity.space_group_name 'P 2 21 21'
_em_3d_crystal_entity.space_group_num 18
#
_em_admin.entry_id 7C4U
_em_admin.current_status REL
_em_admin.deposition_date 2020-05-18
_em_admin.deposition_site PDBJ
_em_admin.last_update 2025-04-09
_em_admin.map_release_date 2020-08-12
_em_admin.title 'MicroED structure of orthorhombic Vancomycin at 1.2 A resolution'
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 730
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
_em_diffraction_shell.id 1
_em_diffraction_shell.em_diffraction_stats_id 1
_em_diffraction_shell.fourier_space_coverage 75.6
_em_diffraction_shell.high_resolution 1.20
_em_diffraction_shell.low_resolution 1.30
_em_diffraction_shell.multiplicity 7.45
_em_diffraction_shell.num_structure_factors 1907
_em_diffraction_shell.phase_residual 1
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details ?
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 74.7
_em_diffraction_stats.high_resolution 1.2
_em_diffraction_stats.num_intensities_measured 64605
_em_diffraction_stats.num_structure_factors 6840
_em_diffraction_stats.overall_phase_error 0
_em_diffraction_stats.overall_phase_residual 1
_em_diffraction_stats.phase_error_rejection_criteria 60
_em_diffraction_stats.r_merge 0.185
_em_diffraction_stats.r_sym 0.185
#
_em_entity_assembly_molwt.entity_assembly_id 1
_em_entity_assembly_molwt.id 1
_em_entity_assembly_molwt.experimental_flag NO
_em_entity_assembly_molwt.units ?
_em_entity_assembly_molwt.value ?
#
_em_entity_assembly_naturalsource.id 2
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.ncbi_tax_id 31958
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism 'Amycolatopsis orientalis'
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.0286
_em_image_recording.average_exposure_time 5.72
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'GATAN ULTRASCAN 4000 (4k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? 'CCP4 package' ? ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ?
9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ?
11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ?
12 RECONSTRUCTION ? ? ? 1 ? ?
13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration ?
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Science Foundation (NSF, China)' China 51925307 1
'National Science Foundation (NSF, China)' China 21733010 2
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 BGC 1 n
2 RER 2 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1FVM
#
_atom_sites.entry_id 7C4U
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 0.049850
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.030285
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023969
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
CL
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N . MLU A 1 1 ? -3.746 -7.259 12.032 1.00 9.70 ? 1 MLU A N 1
HETATM 2 C CN . MLU A 1 1 ? -3.225 -7.333 10.656 1.00 10.49 ? 1 MLU A CN 1
HETATM 3 C CA . MLU A 1 1 ? -3.772 -5.861 12.458 1.00 9.07 ? 1 MLU A CA 1
HETATM 4 C C . MLU A 1 1 ? -4.454 -4.990 11.433 1.00 7.97 ? 1 MLU A C 1
HETATM 5 O O . MLU A 1 1 ? -5.713 -5.138 11.277 1.00 8.90 ? 1 MLU A O 1
HETATM 6 C CB . MLU A 1 1 ? -4.599 -5.785 13.711 1.00 12.33 ? 1 MLU A CB 1
HETATM 7 C CG . MLU A 1 1 ? -4.189 -4.571 14.510 1.00 26.77 ? 1 MLU A CG 1
HETATM 8 C CD1 . MLU A 1 1 ? -5.343 -4.225 15.439 1.00 25.77 ? 1 MLU A CD1 1
HETATM 9 C CD2 . MLU A 1 1 ? -2.995 -4.983 15.363 1.00 32.72 ? 1 MLU A CD2 1
HETATM 10 N N . OMZ A 1 2 ? -3.734 -4.126 10.744 1.00 7.60 ? 2 OMZ A N 1
HETATM 11 C CA . OMZ A 1 2 ? -4.329 -3.324 9.734 1.00 9.50 ? 2 OMZ A CA 1
HETATM 12 C C . OMZ A 1 2 ? -3.814 -1.899 9.793 1.00 11.62 ? 2 OMZ A C 1
HETATM 13 O O . OMZ A 1 2 ? -4.214 -1.156 8.845 1.00 11.37 ? 2 OMZ A O 1
HETATM 14 C CB . OMZ A 1 2 ? -4.012 -3.895 8.347 1.00 9.47 ? 2 OMZ A CB 1
HETATM 15 O OC . OMZ A 1 2 ? -4.359 -5.224 8.235 1.00 9.00 ? 2 OMZ A OC 1
HETATM 16 C CG . OMZ A 1 2 ? -2.561 -3.698 8.066 1.00 8.45 ? 2 OMZ A CG 1
HETATM 17 C CD1 . OMZ A 1 2 ? -2.146 -2.714 7.205 1.00 8.23 ? 2 OMZ A CD1 1
HETATM 18 C CD2 . OMZ A 1 2 ? -1.633 -4.529 8.676 1.00 9.87 ? 2 OMZ A CD2 1
HETATM 19 C CE1 . OMZ A 1 2 ? -0.812 -2.551 6.966 1.00 8.81 ? 2 OMZ A CE1 1
HETATM 20 CL CL . OMZ A 1 2 ? -0.296 -1.314 5.916 1.00 16.54 ? 2 OMZ A CL 1
HETATM 21 C CE2 . OMZ A 1 2 ? -0.296 -4.355 8.437 1.00 7.78 ? 2 OMZ A CE2 1
HETATM 22 C CZ . OMZ A 1 2 ? 0.121 -3.340 7.578 1.00 8.01 ? 2 OMZ A CZ 1
HETATM 23 O OH . OMZ A 1 2 ? 1.428 -3.161 7.349 1.00 8.25 ? 2 OMZ A OH 1
ATOM 24 N N . ASN A 1 3 ? -3.016 -1.543 10.787 1.00 7.52 ? 3 ASN A N 1
ATOM 25 C CA . ASN A 1 3 ? -2.825 -0.161 11.139 1.00 8.28 ? 3 ASN A CA 1
ATOM 26 C C . ASN A 1 3 ? -1.484 0.340 10.705 1.00 6.98 ? 3 ASN A C 1
ATOM 27 O O . ASN A 1 3 ? -1.395 1.337 10.002 1.00 8.75 ? 3 ASN A O 1
ATOM 28 C CB . ASN A 1 3 ? -2.950 -0.001 12.647 1.00 9.84 ? 3 ASN A CB 1
ATOM 29 C CG . ASN A 1 3 ? -4.322 -0.368 13.143 1.00 14.66 ? 3 ASN A CG 1
ATOM 30 O OD1 . ASN A 1 3 ? -5.314 -0.157 12.451 1.00 13.09 ? 3 ASN A OD1 1
ATOM 31 N ND2 . ASN A 1 3 ? -4.390 -0.934 14.342 1.00 17.82 ? 3 ASN A ND2 1
HETATM 32 N N . GHP A 1 4 ? -0.436 -0.346 11.123 1.00 6.75 ? 4 GHP A N 1
HETATM 33 C CA . GHP A 1 4 ? 0.889 0.196 10.948 1.00 8.34 ? 4 GHP A CA 1
HETATM 34 C C . GHP A 1 4 ? 1.605 0.147 12.242 1.00 7.50 ? 4 GHP A C 1
HETATM 35 O O . GHP A 1 4 ? 1.612 -0.871 12.894 1.00 7.18 ? 4 GHP A O 1
HETATM 36 C C1 . GHP A 1 4 ? 1.675 -0.615 10.023 1.00 5.32 ? 4 GHP A C1 1
HETATM 37 C C2 . GHP A 1 4 ? 3.034 -0.454 9.990 1.00 7.74 ? 4 GHP A C2 1
HETATM 38 C C3 . GHP A 1 4 ? 3.780 -1.191 9.124 1.00 5.86 ? 4 GHP A C3 1
HETATM 39 C C4 . GHP A 1 4 ? 3.164 -2.110 8.319 1.00 6.42 ? 4 GHP A C4 1
HETATM 40 O O4 . GHP A 1 4 ? 3.893 -2.840 7.481 1.00 7.60 ? 4 GHP A O4 1
HETATM 41 C C5 . GHP A 1 4 ? 1.801 -2.284 8.339 1.00 7.64 ? 4 GHP A C5 1
HETATM 42 C C6 . GHP A 1 4 ? 1.071 -1.525 9.213 1.00 7.69 ? 4 GHP A C6 1
HETATM 43 N N . GHP A 1 5 ? 2.180 1.261 12.634 1.00 8.36 ? 5 GHP A N 1
HETATM 44 C CA . GHP A 1 5 ? 3.239 1.235 13.579 1.00 9.13 ? 5 GHP A CA 1
HETATM 45 C C . GHP A 1 5 ? 4.247 2.291 13.105 1.00 7.49 ? 5 GHP A C 1
HETATM 46 O O . GHP A 1 5 ? 3.840 3.142 12.338 1.00 7.51 ? 5 GHP A O 1
HETATM 47 C C1 . GHP A 1 5 ? 2.891 1.651 14.943 1.00 6.42 ? 5 GHP A C1 1
HETATM 48 C C2 . GHP A 1 5 ? 3.146 0.761 15.966 1.00 8.53 ? 5 GHP A C2 1
HETATM 49 C C3 . GHP A 1 5 ? 2.930 1.115 17.265 1.00 11.94 ? 5 GHP A C3 1
HETATM 50 C C4 . GHP A 1 5 ? 2.471 2.384 17.553 1.00 9.81 ? 5 GHP A C4 1
HETATM 51 O O4 . GHP A 1 5 ? 2.234 2.724 18.855 1.00 18.98 ? 5 GHP A O4 1
HETATM 52 C C5 . GHP A 1 5 ? 2.216 3.305 16.541 1.00 11.04 ? 5 GHP A C5 1
HETATM 53 C C6 . GHP A 1 5 ? 2.446 2.931 15.230 1.00 8.09 ? 5 GHP A C6 1
HETATM 54 N N . OMY A 1 6 ? 5.504 2.237 13.526 1.00 7.58 ? 6 OMY A N 1
HETATM 55 C CA . OMY A 1 6 ? 6.058 1.156 14.362 1.00 9.49 ? 6 OMY A CA 1
HETATM 56 O OCZ . OMY A 1 6 ? 5.144 -1.144 8.988 1.00 6.81 ? 6 OMY A OCZ 1
HETATM 57 C CE2 . OMY A 1 6 ? 6.396 0.550 10.166 1.00 8.22 ? 6 OMY A CE2 1
HETATM 58 C CE1 . OMY A 1 6 ? 5.664 -1.405 11.367 1.00 5.99 ? 6 OMY A CE1 1
HETATM 59 C CZ . OMY A 1 6 ? 5.756 -0.666 10.198 1.00 7.18 ? 6 OMY A CZ 1
HETATM 60 C CG . OMY A 1 6 ? 6.881 0.236 12.489 1.00 7.35 ? 6 OMY A CG 1
HETATM 61 C CD2 . OMY A 1 6 ? 6.965 1.000 11.334 1.00 6.62 ? 6 OMY A CD2 1
HETATM 62 C CD1 . OMY A 1 6 ? 6.229 -0.961 12.530 1.00 8.21 ? 6 OMY A CD1 1
HETATM 63 C CB . OMY A 1 6 ? 7.387 0.703 13.816 1.00 7.98 ? 6 OMY A CB 1
HETATM 64 CL CL . OMY A 1 6 ? 4.838 -2.953 11.405 1.00 9.57 ? 6 OMY A CL 1
HETATM 65 O O . OMY A 1 6 ? 6.217 2.899 15.993 1.00 10.95 ? 6 OMY A O 1
HETATM 66 C C . OMY A 1 6 ? 6.118 1.688 15.759 1.00 9.17 ? 6 OMY A C 1
HETATM 67 O ODE . OMY A 1 6 ? 8.190 1.828 13.606 1.00 6.86 ? 6 OMY A ODE 1
HETATM 68 N N . 3FG A 1 7 ? 6.026 0.775 16.705 1.00 8.52 ? 7 3FG A N 1
HETATM 69 O OD1 . 3FG A 1 7 ? 1.377 -0.611 18.414 1.00 10.99 ? 7 3FG A OD1 1
HETATM 70 C CD1 . 3FG A 1 7 ? 2.665 -0.672 18.805 1.00 9.15 ? 7 3FG A CD1 1
HETATM 71 C CG1 . 3FG A 1 7 ? 3.565 0.218 18.266 1.00 11.64 ? 7 3FG A CG1 1
HETATM 72 C CZ . 3FG A 1 7 ? 3.037 -1.624 19.735 1.00 14.41 ? 7 3FG A CZ 1
HETATM 73 C CD2 . 3FG A 1 7 ? 4.374 -1.642 20.095 1.00 12.41 ? 7 3FG A CD2 1
HETATM 74 O OD2 . 3FG A 1 7 ? 4.793 -2.558 21.006 1.00 14.03 ? 7 3FG A OD2 1
HETATM 75 C CG2 . 3FG A 1 7 ? 5.296 -0.768 19.551 1.00 10.71 ? 7 3FG A CG2 1
HETATM 76 C CB . 3FG A 1 7 ? 4.879 0.174 18.646 1.00 8.82 ? 7 3FG A CB 1
HETATM 77 C CA . 3FG A 1 7 ? 5.803 1.151 18.046 1.00 13.95 ? 7 3FG A CA 1
HETATM 78 C C . 3FG A 1 7 ? 7.102 1.255 18.896 1.00 11.19 ? 7 3FG A C 1
HETATM 79 O O . 3FG A 1 7 ? 8.125 0.722 18.436 1.00 13.90 ? 7 3FG A O 1
HETATM 80 O OXT . 3FG A 1 7 ? 6.980 1.912 19.960 1.00 13.65 ? 7 3FG A OXT 1
HETATM 81 N N . MLU B 1 1 ? 16.035 6.151 13.805 1.00 11.07 ? 1 MLU B N 1
HETATM 82 C CN . MLU B 1 1 ? 16.488 6.393 12.447 1.00 10.18 ? 1 MLU B CN 1
HETATM 83 C CA . MLU B 1 1 ? 14.622 6.496 13.917 1.00 10.71 ? 1 MLU B CA 1
HETATM 84 C C . MLU B 1 1 ? 13.737 5.768 12.893 1.00 9.89 ? 1 MLU B C 1
HETATM 85 O O . MLU B 1 1 ? 13.928 4.513 12.718 1.00 8.97 ? 1 MLU B O 1
HETATM 86 C CB . MLU B 1 1 ? 14.171 6.077 15.306 1.00 13.95 ? 1 MLU B CB 1
HETATM 87 C CG . MLU B 1 1 ? 12.821 6.650 15.661 1.00 20.54 ? 1 MLU B CG 1
HETATM 88 C CD1 . MLU B 1 1 ? 12.909 8.167 15.594 1.00 23.81 ? 1 MLU B CD1 1
HETATM 89 C CD2 . MLU B 1 1 ? 12.562 6.266 17.108 1.00 22.31 ? 1 MLU B CD2 1
HETATM 90 N N . OMZ B 1 2 ? 12.840 6.482 12.232 1.00 9.21 ? 2 OMZ B N 1
HETATM 91 C CA . OMZ B 1 2 ? 11.859 5.840 11.437 1.00 6.88 ? 2 OMZ B CA 1
HETATM 92 C C . OMZ B 1 2 ? 10.594 6.595 11.462 1.00 7.45 ? 2 OMZ B C 1
HETATM 93 O O . OMZ B 1 2 ? 10.733 7.839 11.665 1.00 8.76 ? 2 OMZ B O 1
HETATM 94 C CB . OMZ B 1 2 ? 12.331 5.769 9.974 1.00 8.97 ? 2 OMZ B CB 1
HETATM 95 O OC . OMZ B 1 2 ? 12.511 6.990 9.426 1.00 8.64 ? 2 OMZ B OC 1
HETATM 96 C CG . OMZ B 1 2 ? 11.342 4.989 9.199 1.00 9.06 ? 2 OMZ B CG 1
HETATM 97 C CD1 . OMZ B 1 2 ? 11.010 3.713 9.580 1.00 6.37 ? 2 OMZ B CD1 1
HETATM 98 C CD2 . OMZ B 1 2 ? 10.764 5.559 8.074 1.00 8.92 ? 2 OMZ B CD2 1
HETATM 99 C CE1 . OMZ B 1 2 ? 10.097 3.023 8.857 1.00 6.34 ? 2 OMZ B CE1 1
HETATM 100 CL CL . OMZ B 1 2 ? 9.678 1.485 9.344 1.00 11.58 ? 2 OMZ B CL 1
HETATM 101 C CE2 . OMZ B 1 2 ? 9.848 4.856 7.341 1.00 9.25 ? 2 OMZ B CE2 1
HETATM 102 C CZ . OMZ B 1 2 ? 9.504 3.573 7.731 1.00 6.49 ? 2 OMZ B CZ 1
HETATM 103 O OH . OMZ B 1 2 ? 8.621 2.894 7.021 1.00 7.73 ? 2 OMZ B OH 1
ATOM 104 N N . ASN B 1 3 ? 9.454 5.952 11.386 1.00 8.70 ? 3 ASN B N 1
ATOM 105 C CA . ASN B 1 3 ? 8.229 6.662 11.164 1.00 8.11 ? 3 ASN B CA 1
ATOM 106 C C . ASN B 1 3 ? 7.222 5.549 11.099 1.00 7.64 ? 3 ASN B C 1
ATOM 107 O O . ASN B 1 3 ? 7.349 4.544 11.781 1.00 8.42 ? 3 ASN B O 1
ATOM 108 C CB . ASN B 1 3 ? 8.357 7.399 9.826 1.00 8.74 ? 3 ASN B CB 1
ATOM 109 C CG . ASN B 1 3 ? 7.333 8.491 9.647 1.00 8.43 ? 3 ASN B CG 1
ATOM 110 O OD1 . ASN B 1 3 ? 6.144 8.261 9.720 1.00 7.95 ? 3 ASN B OD1 1
ATOM 111 N ND2 . ASN B 1 3 ? 7.810 9.707 9.427 1.00 13.72 ? 3 ASN B ND2 1
HETATM 112 N N . GHP B 1 4 ? 6.223 5.710 10.260 1.00 7.78 ? 4 GHP B N 1
HETATM 113 C CA . GHP B 1 4 ? 5.273 4.666 10.094 1.00 7.02 ? 4 GHP B CA 1
HETATM 114 C C . GHP B 1 4 ? 4.014 5.310 9.685 1.00 5.38 ? 4 GHP B C 1
HETATM 115 O O . GHP B 1 4 ? 4.003 6.221 8.872 1.00 6.08 ? 4 GHP B O 1
HETATM 116 C C1 . GHP B 1 4 ? 5.675 3.813 8.955 1.00 6.54 ? 4 GHP B C1 1
HETATM 117 C C2 . GHP B 1 4 ? 4.732 3.073 8.295 1.00 7.42 ? 4 GHP B C2 1
HETATM 118 C C3 . GHP B 1 4 ? 5.078 2.293 7.211 1.00 6.99 ? 4 GHP B C3 1
HETATM 119 C C4 . GHP B 1 4 ? 6.384 2.274 6.793 1.00 9.81 ? 4 GHP B C4 1
HETATM 120 O O4 . GHP B 1 4 ? 6.757 1.495 5.713 1.00 7.93 ? 4 GHP B O4 1
HETATM 121 C C5 . GHP B 1 4 ? 7.328 3.005 7.457 1.00 6.39 ? 4 GHP B C5 1
HETATM 122 C C6 . GHP B 1 4 ? 6.968 3.772 8.530 1.00 7.36 ? 4 GHP B C6 1
HETATM 123 N N . GHP B 1 5 ? 2.942 4.879 10.301 1.00 7.33 ? 5 GHP B N 1
HETATM 124 C CA . GHP B 1 5 ? 1.678 5.178 9.788 1.00 5.68 ? 5 GHP B CA 1
HETATM 125 C C . GHP B 1 5 ? 0.826 3.929 10.146 1.00 6.96 ? 5 GHP B C 1
HETATM 126 O O . GHP B 1 5 ? 1.127 3.301 11.146 1.00 6.22 ? 5 GHP B O 1
HETATM 127 C C1 . GHP B 1 5 ? 1.018 6.304 10.480 1.00 4.42 ? 5 GHP B C1 1
HETATM 128 C C2 . GHP B 1 5 ? 0.338 7.218 9.722 1.00 5.44 ? 5 GHP B C2 1
HETATM 129 C C3 . GHP B 1 5 ? -0.369 8.221 10.329 1.00 6.55 ? 5 GHP B C3 1
HETATM 130 C C4 . GHP B 1 5 ? -0.365 8.281 11.708 1.00 7.48 ? 5 GHP B C4 1
HETATM 131 O O4 . GHP B 1 5 ? -1.022 9.260 12.315 1.00 7.34 ? 5 GHP B O4 1
HETATM 132 C C5 . GHP B 1 5 ? 0.313 7.390 12.488 1.00 7.23 ? 5 GHP B C5 1
HETATM 133 C C6 . GHP B 1 5 ? 0.992 6.384 11.862 1.00 5.84 ? 5 GHP B C6 1
HETATM 134 N N . OMY B 1 6 ? -0.208 3.610 9.385 1.00 7.63 ? 6 OMY B N 1
HETATM 135 C CA . OMY B 1 6 ? -0.696 4.429 8.274 1.00 6.30 ? 6 OMY B CA 1
HETATM 136 O OCZ . OMY B 1 6 ? 4.295 1.658 6.277 1.00 8.75 ? 6 OMY B OCZ 1
HETATM 137 C CE2 . OMY B 1 6 ? 2.014 1.233 7.059 1.00 9.62 ? 6 OMY B CE2 1
HETATM 138 C CE1 . OMY B 1 6 ? 2.589 3.384 6.127 1.00 9.38 ? 6 OMY B CE1 1
HETATM 139 C CZ . OMY B 1 6 ? 2.942 2.100 6.496 1.00 10.04 ? 6 OMY B CZ 1
HETATM 140 C CG . OMY B 1 6 ? 0.390 2.984 6.876 1.00 8.41 ? 6 OMY B CG 1
HETATM 141 C CD2 . OMY B 1 6 ? 0.720 1.677 7.253 1.00 7.98 ? 6 OMY B CD2 1
HETATM 142 C CD1 . OMY B 1 6 ? 1.316 3.841 6.328 1.00 10.02 ? 6 OMY B CD1 1
HETATM 143 C CB . OMY B 1 6 ? -0.992 3.561 7.098 1.00 9.17 ? 6 OMY B CB 1
HETATM 144 CL CL . OMY B 1 6 ? 3.757 4.492 5.416 1.00 11.05 ? 6 OMY B CL 1
HETATM 145 O O . OMY B 1 6 ? -2.560 4.648 9.760 1.00 9.43 ? 6 OMY B O 1
HETATM 146 C C . OMY B 1 6 ? -1.886 5.138 8.847 1.00 7.14 ? 6 OMY B C 1
HETATM 147 O ODE . OMY B 1 6 ? -1.914 2.549 7.447 1.00 9.83 ? 6 OMY B ODE 1
HETATM 148 N N . 3FG B 1 7 ? -2.130 6.331 8.361 1.00 6.39 ? 7 3FG B N 1
HETATM 149 O OD1 . 3FG B 1 7 ? 0.349 10.668 9.684 1.00 6.69 ? 7 3FG B OD1 1
HETATM 150 C CD1 . 3FG B 1 7 ? -0.840 10.290 9.186 1.00 7.27 ? 7 3FG B CD1 1
HETATM 151 C CG1 . 3FG B 1 7 ? -1.243 9.007 9.413 1.00 6.22 ? 7 3FG B CG1 1
HETATM 152 C CZ . 3FG B 1 7 ? -1.590 11.198 8.442 1.00 8.89 ? 7 3FG B CZ 1
HETATM 153 C CD2 . 3FG B 1 7 ? -2.799 10.739 7.945 1.00 8.61 ? 7 3FG B CD2 1
HETATM 154 O OD2 . 3FG B 1 7 ? -3.583 11.578 7.218 1.00 9.69 ? 7 3FG B OD2 1
HETATM 155 C CG2 . 3FG B 1 7 ? -3.237 9.458 8.168 1.00 7.83 ? 7 3FG B CG2 1
HETATM 156 C CB . 3FG B 1 7 ? -2.464 8.592 8.912 1.00 5.62 ? 7 3FG B CB 1
HETATM 157 C CA . 3FG B 1 7 ? -2.919 7.216 9.145 1.00 6.81 ? 7 3FG B CA 1
HETATM 158 C C . 3FG B 1 7 ? -4.438 7.123 8.886 1.00 8.39 ? 7 3FG B C 1
HETATM 159 O O . 3FG B 1 7 ? -4.799 6.567 7.837 1.00 9.86 ? 7 3FG B O 1
HETATM 160 O OXT . 3FG B 1 7 ? -5.163 7.611 9.790 1.00 9.56 ? 7 3FG B OXT 1
HETATM 161 C C2 . BGC C 2 . ? 5.400 -3.308 5.781 1.00 8.61 ? 1 BGC C C2 1
HETATM 162 C C3 . BGC C 2 . ? 6.151 -2.609 4.656 1.00 9.91 ? 1 BGC C C3 1
HETATM 163 C C4 . BGC C 2 . ? 5.092 -2.005 3.714 1.00 11.37 ? 1 BGC C C4 1
HETATM 164 C C5 . BGC C 2 . ? 4.344 -0.961 4.555 1.00 10.38 ? 1 BGC C C5 1
HETATM 165 C C6 . BGC C 2 . ? 3.347 -0.253 3.614 1.00 18.99 ? 1 BGC C C6 1
HETATM 166 C C1 . BGC C 2 . ? 4.548 -2.235 6.440 1.00 8.54 ? 1 BGC C C1 1
HETATM 167 O O2 . BGC C 2 . ? 6.346 -3.754 6.696 1.00 6.92 ? 1 BGC C O2 1
HETATM 168 O O3 . BGC C 2 . ? 6.860 -3.523 3.893 1.00 10.00 ? 1 BGC C O3 1
HETATM 169 O O4 . BGC C 2 . ? 5.711 -1.270 2.724 1.00 11.78 ? 1 BGC C O4 1
HETATM 170 O O5 . BGC C 2 . ? 3.662 -1.654 5.552 1.00 10.12 ? 1 BGC C O5 1
HETATM 171 O O6 . BGC C 2 . ? 2.453 -1.205 3.145 1.00 13.27 ? 1 BGC C O6 1
HETATM 172 C C1 . RER C 2 . ? 6.382 -5.124 6.789 1.00 6.38 ? 2 RER C C1 1
HETATM 173 C C2 . RER C 2 . ? 7.659 -5.511 7.554 1.00 6.37 ? 2 RER C C2 1
HETATM 174 C C3 . RER C 2 . ? 7.533 -5.452 9.109 1.00 9.45 ? 2 RER C C3 1
HETATM 175 N N3 . RER C 2 . ? 8.567 -6.297 9.677 1.00 10.39 ? 2 RER C N3 1
HETATM 176 C C3A . RER C 2 . ? 7.663 -4.005 9.636 1.00 9.52 ? 2 RER C C3A 1
HETATM 177 C C4 . RER C 2 . ? 6.175 -6.043 9.526 1.00 8.71 ? 2 RER C C4 1
HETATM 178 O O4 . RER C 2 . ? 6.265 -7.391 9.215 1.00 8.96 ? 2 RER C O4 1
HETATM 179 C C5 . RER C 2 . ? 5.092 -5.363 8.728 1.00 8.22 ? 2 RER C C5 1
HETATM 180 O O5 . RER C 2 . ? 5.210 -5.598 7.359 1.00 6.51 ? 2 RER C O5 1
HETATM 181 C C5A . RER C 2 . ? 3.753 -5.909 9.114 1.00 6.97 ? 2 RER C C5A 1
HETATM 182 C C2 . BGC D 2 . ? 7.811 1.187 3.683 1.00 10.29 ? 1 BGC D C2 1
HETATM 183 C C3 . BGC D 2 . ? 8.012 1.857 2.326 1.00 12.23 ? 1 BGC D C3 1
HETATM 184 C C4 . BGC D 2 . ? 6.638 2.179 1.765 1.00 12.81 ? 1 BGC D C4 1
HETATM 185 C C5 . BGC D 2 . ? 5.993 3.160 2.756 1.00 11.40 ? 1 BGC D C5 1
HETATM 186 C C6 . BGC D 2 . ? 4.644 3.589 2.145 1.00 17.91 ? 1 BGC D C6 1
HETATM 187 C C1 . BGC D 2 . ? 7.018 2.194 4.557 1.00 9.48 ? 1 BGC D C1 1
HETATM 188 O O2 . BGC D 2 . ? 9.058 1.045 4.248 1.00 8.43 ? 1 BGC D O2 1
HETATM 189 O O3 . BGC D 2 . ? 8.592 0.991 1.407 1.00 11.70 ? 1 BGC D O3 1
HETATM 190 O O4 . BGC D 2 . ? 6.850 2.868 0.599 1.00 12.47 ? 1 BGC D O4 1
HETATM 191 O O5 . BGC D 2 . ? 5.792 2.482 3.967 1.00 10.37 ? 1 BGC D O5 1
HETATM 192 O O6 . BGC D 2 . ? 3.944 2.453 1.747 1.00 15.43 ? 1 BGC D O6 1
HETATM 193 C C1 . RER D 2 . ? 9.360 -0.291 4.349 1.00 9.10 ? 2 RER D C1 1
HETATM 194 C C2 . RER D 2 . ? 10.894 -0.385 4.448 1.00 11.20 ? 2 RER D C2 1
HETATM 195 C C3 . RER D 2 . ? 11.442 -0.098 5.873 1.00 10.47 ? 2 RER D C3 1
HETATM 196 N N3 . RER D 2 . ? 12.780 -0.628 5.995 1.00 9.73 ? 2 RER D N3 1
HETATM 197 C C3A . RER D 2 . ? 11.489 1.379 6.114 1.00 8.81 ? 2 RER D C3A 1
HETATM 198 C C4 . RER D 2 . ? 10.546 -0.786 6.934 1.00 8.90 ? 2 RER D C4 1
HETATM 199 O O4 . RER D 2 . ? 10.784 -2.155 6.817 1.00 11.02 ? 2 RER D O4 1
HETATM 200 C C5 . RER D 2 . ? 9.102 -0.446 6.652 1.00 9.40 ? 2 RER D C5 1
HETATM 201 O O5 . RER D 2 . ? 8.730 -0.920 5.405 1.00 9.15 ? 2 RER D O5 1
HETATM 202 C C5A . RER D 2 . ? 8.203 -1.139 7.649 1.00 8.93 ? 2 RER D C5A 1
HETATM 203 CL CL . CL E 3 . ? -1.092 -3.283 12.303 1.00 7.01 ? 101 CL A CL 1
HETATM 204 O O . HOH F 4 . ? 2.377 -4.673 5.665 1.00 21.38 ? 201 HOH A O 1
HETATM 205 O O . HOH F 4 . ? -3.453 -6.089 6.028 1.00 18.67 ? 202 HOH A O 1
HETATM 206 O O . HOH F 4 . ? 9.915 3.419 12.473 1.00 10.26 ? 203 HOH A O 1
HETATM 207 O O . HOH F 4 . ? -0.050 -2.693 19.238 1.00 21.51 ? 204 HOH A O 1
HETATM 208 O O . HOH F 4 . ? 9.367 1.659 16.028 1.00 11.92 ? 205 HOH A O 1
HETATM 209 O O . HOH F 4 . ? -6.682 -0.082 8.526 1.00 17.25 ? 206 HOH A O 1
HETATM 210 O O . HOH F 4 . ? -7.012 -4.974 7.676 1.00 22.84 ? 207 HOH A O 1
HETATM 211 O O . HOH F 4 . ? 5.309 -1.881 15.716 1.00 11.66 ? 208 HOH A O 1
HETATM 212 O O . HOH F 4 . ? -0.689 3.747 17.575 1.00 19.47 ? 209 HOH A O 1
HETATM 213 O O . HOH F 4 . ? -0.725 0.951 14.788 1.00 20.92 ? 210 HOH A O 1
HETATM 214 O O . HOH F 4 . ? -6.836 -3.501 5.721 1.00 18.49 ? 211 HOH A O 1
HETATM 215 O O . HOH F 4 . ? -6.074 2.575 8.897 1.00 15.64 ? 212 HOH A O 1
HETATM 216 O O . HOH F 4 . ? -8.672 -2.638 9.639 1.00 24.16 ? 213 HOH A O 1
HETATM 217 O O . HOH F 4 . ? 9.685 -1.487 11.328 1.00 24.69 ? 214 HOH A O 1
HETATM 218 O O . HOH F 4 . ? 1.935 6.250 15.422 1.00 14.26 ? 215 HOH A O 1
HETATM 219 O O . HOH F 4 . ? 9.039 -3.060 12.899 1.00 21.13 ? 216 HOH A O 1
HETATM 220 O O . HOH F 4 . ? -5.922 0.760 3.883 1.00 18.03 ? 217 HOH A O 1
HETATM 221 O O . HOH F 4 . ? 6.387 -6.012 2.820 1.00 26.24 ? 218 HOH A O 1
HETATM 222 O O . HOH G 4 . ? -3.900 2.960 10.552 1.00 15.60 ? 201 HOH B O 1
HETATM 223 O O . HOH G 4 . ? -1.174 9.263 14.683 1.00 11.78 ? 202 HOH B O 1
HETATM 224 O O . HOH G 4 . ? -6.142 4.610 7.184 1.00 16.82 ? 203 HOH B O 1
HETATM 225 O O . HOH G 4 . ? -2.724 13.841 6.505 1.00 12.51 ? 204 HOH B O 1
HETATM 226 O O . HOH G 4 . ? -4.009 4.556 6.453 1.00 22.26 ? 205 HOH B O 1
HETATM 227 O O . HOH G 4 . ? 2.661 7.544 6.990 1.00 17.20 ? 206 HOH B O 1
HETATM 228 O O . HOH G 4 . ? 17.928 6.772 15.581 1.00 13.69 ? 207 HOH B O 1
HETATM 229 O O . HOH G 4 . ? 12.683 2.144 12.385 1.00 23.66 ? 208 HOH B O 1
HETATM 230 O O . HOH G 4 . ? -0.692 3.140 13.183 1.00 10.55 ? 209 HOH B O 1
HETATM 231 O O . HOH G 4 . ? 5.836 6.810 6.764 1.00 19.79 ? 210 HOH B O 1
HETATM 232 O O . HOH G 4 . ? -0.214 7.073 6.261 1.00 8.90 ? 211 HOH B O 1
HETATM 233 O O . HOH G 4 . ? 9.069 8.131 14.088 1.00 27.59 ? 212 HOH B O 1
HETATM 234 O O . HOH G 4 . ? 16.850 3.262 12.764 1.00 18.38 ? 213 HOH B O 1
HETATM 235 O O . HOH G 4 . ? -5.847 8.494 5.519 1.00 24.72 ? 214 HOH B O 1
HETATM 236 O O . HOH G 4 . ? 9.148 10.426 12.713 1.00 18.42 ? 215 HOH B O 1
HETATM 237 O O . HOH G 4 . ? -1.018 9.739 4.871 1.00 19.07 ? 216 HOH B O 1
HETATM 238 O O . HOH G 4 . ? -7.476 4.999 5.419 1.00 24.26 ? 217 HOH B O 1
HETATM 239 O O . HOH G 4 . ? 16.857 4.610 17.398 1.00 25.58 ? 218 HOH B O 1
HETATM 240 O O . HOH G 4 . ? 19.878 5.021 14.801 1.00 11.97 ? 219 HOH B O 1
HETATM 241 O O . HOH G 4 . ? -7.521 13.103 6.364 1.00 26.37 ? 220 HOH B O 1
HETATM 242 O O . HOH G 4 . ? 0.091 0.799 3.830 1.00 26.20 ? 221 HOH B O 1
HETATM 243 O O . HOH G 4 . ? 17.570 7.297 17.970 1.00 25.02 ? 222 HOH B O 1
HETATM 244 O O . HOH G 4 . ? 1.471 2.776 2.461 1.00 24.77 ? 223 HOH B O 1
HETATM 245 O O . HOH G 4 . ? 0.020 5.643 3.905 1.00 30.81 ? 224 HOH B O 1
HETATM 246 O O . HOH G 4 . ? 9.458 10.624 15.806 1.00 21.50 ? 225 HOH B O 1
HETATM 247 O O . HOH G 4 . ? 7.857 -1.652 1.473 1.00 10.14 ? 226 HOH B O 1
HETATM 248 O O . HOH G 4 . ? 9.372 -3.619 4.650 1.00 10.62 ? 227 HOH B O 1
HETATM 249 O O . HOH G 4 . ? 4.252 -1.196 0.566 1.00 16.66 ? 228 HOH B O 1
HETATM 250 O O . HOH G 4 . ? 9.890 -3.226 2.368 1.00 14.38 ? 229 HOH B O 1
HETATM 251 O O . HOH G 4 . ? 11.265 1.675 0.376 1.00 19.81 ? 230 HOH B O 1
HETATM 252 O O . HOH G 4 . ? 5.908 4.342 -1.458 1.00 17.98 ? 231 HOH B O 1
HETATM 253 O O . HOH G 4 . ? 10.043 5.355 -0.609 1.00 17.45 ? 232 HOH B O 1
#