HEADER PROTEIN FIBRIL 15-OCT-19 6UOQ
TITLE OSPYL/RCAR5 RESIDUES 24-29 SOLVED FROM ELECTRON DIFFRACTION STILLS
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL5;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 24-29;
COMPND 5 SYNONYM: PYR1-LIKE PROTEIN 11,OSPYL11,PYR1-LIKE PROTEIN 5,OSPYL5,
COMPND 6 REGULATORY COMPONENTS OF ABA RECEPTOR 5;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: ORYZA SATIVA;
SOURCE 4 ORGANISM_COMMON: RICE;
SOURCE 5 ORGANISM_TAXID: 4530
KEYWDS PROTOFILAMENT, PROTEIN FIBRIL
EXPDTA ELECTRON CRYSTALLOGRAPHY
AUTHOR M.GALLAGHER-JONES,L.S.RICHARDS,S.LEE,J.A.RODRIGUEZ
REVDAT 2 13-MAR-24 6UOQ 1 REMARK
REVDAT 1 13-MAY-20 6UOQ 0
JRNL AUTH M.GALLAGHER-JONES,K.C.BUSTILLO,C.OPHUS,L.S.RICHARDS,
JRNL AUTH 2 J.CISTON,S.LEE,A.M.MINOR,J.A.RODRIGUEZ
JRNL TITL ATOMIC STRUCTURES DETERMINED FROM DIGITALLY DEFINED
JRNL TITL 2 NANOCRYSTALLINE REGIONS
JRNL REF IUCRJ V. 7 490 2020
JRNL REFN ESSN 2052-2525
JRNL DOI 10.1107/S2052252520004030
REMARK 2
REMARK 2 RESOLUTION. 1.01 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.01
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.47
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390
REMARK 3 COMPLETENESS FOR RANGE (%) : 75.7
REMARK 3 NUMBER OF REFLECTIONS : 1023
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.236
REMARK 3 R VALUE (WORKING SET) : 0.234
REMARK 3 FREE R VALUE : 0.256
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.990
REMARK 3 FREE R VALUE TEST SET COUNT : 92
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 7.4740 - 1.0070 0.76 931 92 0.2341 0.2557
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.030
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.620
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 8.99
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.82
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6UOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-19.
REMARK 100 THE DEPOSITION ID IS D_1000244971.
REMARK 240
REMARK 240 EXPERIMENTAL DETAILS
REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY
REMARK 240 SAMPLE TYPE : 3D ARRAY
REMARK 240 SPECIMEN TYPE : NULL
REMARK 240 DATA ACQUISITION
REMARK 240 DATE OF DATA COLLECTION : 04-APR-19
REMARK 240 TEMPERATURE (KELVIN) : 100.0
REMARK 240 PH : 7.00
REMARK 240 NUMBER OF CRYSTALS USED : NULL
REMARK 240 MICROSCOPE MODEL : FEI TECNAI F30
REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K)
REMARK 240 ACCELERATION VOLTAGE (KV) : 300
REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1029
REMARK 240 RESOLUTION RANGE HIGH (A) : 1.000
REMARK 240 RESOLUTION RANGE LOW (A) : 7.474
REMARK 240 DATA SCALING SOFTWARE : XSCALE
REMARK 240 COMPLETENESS FOR RANGE (%) : 74.4
REMARK 240 DATA REDUNDANCY : 2.797
REMARK 240 IN THE HIGHEST RESOLUTION SHELL
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :1.00
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.20
REMARK 240 COMPLETENESS FOR SHELL (%) : 70.9
REMARK 240 DATA REDUNDANCY IN SHELL : 2.69
REMARK 240 R MERGE FOR SHELL (I) : 0.35700
REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 240 SOFTWARE USED : NULL
REMARK 240 STARTING MODEL : NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 2.36000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.59500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.78000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.59500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 2.36000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.78000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 770 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 6UOQ A 24 29 UNP Q6I5C3 PYL5_ORYSJ 24 29
SEQRES 1 A 6 ALA VAL ALA ALA GLY ALA
CRYST1 4.720 11.560 39.190 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.211864 0.000000 0.000000 0.00000
SCALE2 0.000000 0.086505 0.000000 0.00000
SCALE3 0.000000 0.000000 0.025517 0.00000
ATOM 1 N ALA A 24 3.290 8.837 1.670 1.00 9.49 N
ANISOU 1 N ALA A 24 599 2356 650 -132 -60 378 N
ATOM 2 CA ALA A 24 3.648 9.352 3.018 1.00 7.40 C
ANISOU 2 CA ALA A 24 438 1878 494 -189 7 201 C
ATOM 3 C ALA A 24 3.036 8.463 4.090 1.00 7.54 C
ANISOU 3 C ALA A 24 485 1885 496 -85 -12 155 C
ATOM 4 O ALA A 24 1.824 8.254 4.108 1.00 8.99 O
ANISOU 4 O ALA A 24 1136 1769 512 -395 -38 150 O
ATOM 5 CB ALA A 24 3.167 10.761 3.173 1.00 12.78 C
ANISOU 5 CB ALA A 24 2128 2033 696 -438 -212 231 C
ATOM 6 H1 ALA A 24 3.870 9.146 1.070 1.00 11.63 H
ATOM 7 H2 ALA A 24 3.315 7.947 1.676 1.00 11.63 H
ATOM 8 H3 ALA A 24 2.470 9.108 1.457 1.00 11.63 H
ATOM 9 HA ALA A 24 4.612 9.352 3.125 1.00 9.12 H
ATOM 10 HB1 ALA A 24 3.346 11.057 4.079 1.00 15.59 H
ATOM 11 HB2 ALA A 24 3.637 11.327 2.541 1.00 15.59 H
ATOM 12 HB3 ALA A 24 2.213 10.790 2.998 1.00 15.59 H
ATOM 13 N VAL A 25 3.872 7.940 4.985 1.00 6.53 N
ANISOU 13 N VAL A 25 573 1442 466 -60 -133 150 N
ATOM 14 CA VAL A 25 3.419 7.120 6.095 1.00 4.33 C
ANISOU 14 CA VAL A 25 333 981 331 -223 1 25 C
ATOM 15 C VAL A 25 4.069 7.638 7.359 1.00 5.11 C
ANISOU 15 C VAL A 25 827 825 291 121 -158 -67 C
ATOM 16 O VAL A 25 5.294 7.760 7.430 1.00 5.51 O
ANISOU 16 O VAL A 25 934 722 437 148 -21 -276 O
ATOM 17 CB VAL A 25 3.754 5.637 5.900 1.00 6.93 C
ANISOU 17 CB VAL A 25 884 1142 607 436 254 14 C
ATOM 18 CG1 VAL A 25 3.199 4.813 7.075 1.00 7.75 C
ANISOU 18 CG1 VAL A 25 1417 804 725 -56 538 8 C
ATOM 19 CG2 VAL A 25 3.202 5.148 4.593 1.00 13.55 C
ANISOU 19 CG2 VAL A 25 2816 1477 855 209 386 -163 C
ATOM 20 H VAL A 25 4.724 8.053 4.964 1.00 8.08 H
ATOM 21 HA VAL A 25 2.456 7.205 6.175 1.00 5.44 H
ATOM 22 HB VAL A 25 4.717 5.524 5.880 1.00 8.56 H
ATOM 23 HG11 VAL A 25 3.226 3.872 6.840 1.00 9.55 H
ATOM 24 HG12 VAL A 25 3.744 4.974 7.860 1.00 9.55 H
ATOM 25 HG13 VAL A 25 2.283 5.084 7.246 1.00 9.55 H
ATOM 26 HG21 VAL A 25 3.330 4.188 4.536 1.00 16.50 H
ATOM 27 HG22 VAL A 25 2.256 5.358 4.551 1.00 16.50 H
ATOM 28 HG23 VAL A 25 3.672 5.587 3.867 1.00 16.50 H
ATOM 29 N ALA A 26 3.259 7.941 8.351 1.00 4.32 N
ANISOU 29 N ALA A 26 373 957 312 -237 48 -27 N
ATOM 30 CA ALA A 26 3.755 8.479 9.605 1.00 5.92 C
ANISOU 30 CA ALA A 26 644 1227 378 -377 77 -109 C
ATOM 31 C ALA A 26 3.070 7.756 10.744 1.00 4.82 C
ANISOU 31 C ALA A 26 983 521 327 -334 35 -65 C
ATOM 32 O ALA A 26 1.847 7.631 10.762 1.00 4.48 O
ANISOU 32 O ALA A 26 448 902 354 -221 -13 201 O
ATOM 33 CB ALA A 26 3.506 9.980 9.688 1.00 9.88 C
ANISOU 33 CB ALA A 26 1482 1636 634 76 438 -180 C
ATOM 34 H ALA A 26 2.405 7.843 8.323 1.00 5.43 H
ATOM 35 HA ALA A 26 4.710 8.329 9.682 1.00 7.35 H
ATOM 36 HB1 ALA A 26 3.826 10.306 10.544 1.00 12.10 H
ATOM 37 HB2 ALA A 26 3.984 10.419 8.967 1.00 12.10 H
ATOM 38 HB3 ALA A 26 2.555 10.148 9.604 1.00 12.10 H
ATOM 39 N ALA A 27 3.860 7.260 11.672 1.00 3.15 N
ANISOU 39 N ALA A 27 405 517 276 3 61 2 N
ATOM 40 CA ALA A 27 3.330 6.620 12.855 1.00 3.33 C
ANISOU 40 CA ALA A 27 317 638 313 66 -128 78 C
ATOM 41 C ALA A 27 4.024 7.202 14.067 1.00 4.77 C
ANISOU 41 C ALA A 27 1095 400 317 135 -23 55 C
ATOM 42 O ALA A 27 5.250 7.337 14.091 1.00 3.29 O
ANISOU 42 O ALA A 27 394 558 299 66 -131 -86 O
ATOM 43 CB ALA A 27 3.583 5.143 12.816 1.00 4.89 C
ANISOU 43 CB ALA A 27 956 566 335 3 -113 84 C
ATOM 44 H ALA A 27 4.719 7.283 11.637 1.00 4.03 H
ATOM 45 HA ALA A 27 2.376 6.783 12.916 1.00 4.25 H
ATOM 46 HB1 ALA A 27 3.186 4.735 13.601 1.00 6.11 H
ATOM 47 HB2 ALA A 27 3.181 4.775 12.013 1.00 6.11 H
ATOM 48 HB3 ALA A 27 4.540 4.986 12.809 1.00 6.11 H
ATOM 49 N GLY A 28 3.254 7.536 15.056 1.00 5.16 N
ANISOU 49 N GLY A 28 1065 604 292 21 124 21 N
ATOM 50 CA GLY A 28 3.854 7.851 16.313 1.00 4.80 C
ANISOU 50 CA GLY A 28 517 957 352 -311 -13 -117 C
ATOM 51 C GLY A 28 3.047 8.902 17.035 1.00 7.65 C
ANISOU 51 C GLY A 28 1016 1467 422 -244 -49 -130 C
ATOM 52 O GLY A 28 1.818 8.832 17.072 1.00 9.34 O
ANISOU 52 O GLY A 28 1190 1775 585 -199 -246 -161 O
ATOM 53 H GLY A 28 2.396 7.587 15.025 1.00 6.44 H
ATOM 54 HA2 GLY A 28 3.897 7.054 16.866 1.00 6.01 H
ATOM 55 HA3 GLY A 28 4.753 8.187 16.174 1.00 6.01 H
ATOM 56 N ALA A 29 3.745 9.852 17.622 1.00 7.89 N
ANISOU 56 N ALA A 29 499 2005 494 -45 7 -33 N
ATOM 57 CA ALA A 29 3.038 10.924 18.289 1.00 15.69 C
ANISOU 57 CA ALA A 29 2147 2970 843 -621 121 -132 C
ATOM 58 C ALA A 29 3.892 12.172 18.407 1.00 22.06 C
ANISOU 58 C ALA A 29 3484 3902 994 -181 31 -47 C
ATOM 59 O ALA A 29 3.449 13.204 18.928 1.00 24.24 O
ANISOU 59 O ALA A 29 4082 4102 1024 -12 -74 -85 O
ATOM 60 CB ALA A 29 2.564 10.451 19.652 1.00 16.19 C
ANISOU 60 CB ALA A 29 1665 3432 1053 -417 354 -220 C
ATOM 61 OXT ALA A 29 5.032 12.176 17.953 1.00 17.35 O
ANISOU 61 OXT ALA A 29 1469 4023 1099 1045 6 17 O
ATOM 62 H ALA A 29 4.603 9.897 17.647 1.00 9.71 H
ATOM 63 HA ALA A 29 2.259 11.168 17.765 1.00 19.07 H
ATOM 64 HB1 ALA A 29 2.152 11.195 20.118 1.00 19.67 H
ATOM 65 HB2 ALA A 29 1.918 9.737 19.531 1.00 19.67 H
ATOM 66 HB3 ALA A 29 3.326 10.126 20.156 1.00 19.67 H
TER 67 ALA A 29
MASTER 164 0 0 0 0 0 0 6 32 1 0 1
END