HEADER PROTEIN FIBRIL 15-OCT-19 6UOP
TITLE OSPYL/RCAR5 (24 - 29) SOLVED BY NANOBEAM DIFFRACTION TOMOGRAPHY
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ABSCISIC ACID RECEPTOR PYL5;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 24-29;
COMPND 5 SYNONYM: PYR1-LIKE PROTEIN 11,OSPYL11,PYR1-LIKE PROTEIN 5,OSPYL5,
COMPND 6 REGULATORY COMPONENTS OF ABA RECEPTOR 5;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: ORYZA SATIVA;
SOURCE 4 ORGANISM_COMMON: RICE;
SOURCE 5 ORGANISM_TAXID: 4530
KEYWDS PROTOFILAMENT, PROTEIN FIBRIL
EXPDTA ELECTRON CRYSTALLOGRAPHY
AUTHOR M.GALLAGHER-JONES,L.S.RICHARDS,S.LEE,J.A.RODRIGUEZ
REVDAT 2 13-MAR-24 6UOP 1 REMARK
REVDAT 1 13-MAY-20 6UOP 0
JRNL AUTH M.GALLAGHER-JONES,K.C.BUSTILLO,C.OPHUS,L.S.RICHARDS,
JRNL AUTH 2 J.CISTON,S.LEE,A.M.MINOR,J.A.RODRIGUEZ
JRNL TITL ATOMIC STRUCTURES DETERMINED FROM DIGITALLY DEFINED
JRNL TITL 2 NANOCRYSTALLINE REGIONS
JRNL REF IUCRJ V. 7 490 2020
JRNL REFN ESSN 2052-2525
JRNL DOI 10.1107/S2052252520004030
REMARK 2
REMARK 2 RESOLUTION. 1.35 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : LS_WUNIT_K1
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.75
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440
REMARK 3 COMPLETENESS FOR RANGE (%) : 69.4
REMARK 3 NUMBER OF REFLECTIONS : 404
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.255
REMARK 3 R VALUE (WORKING SET) : 0.253
REMARK 3 FREE R VALUE : 0.260
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.160
REMARK 3 FREE R VALUE TEST SET COUNT : 37
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 5.7450 - 1.3510 0.69 367 37 0.2532 0.2596
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.040
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 15.75
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.64
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6UOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-19.
REMARK 100 THE DEPOSITION ID IS D_1000244966.
REMARK 240
REMARK 240 EXPERIMENTAL DETAILS
REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY
REMARK 240 SAMPLE TYPE : 3D ARRAY
REMARK 240 SPECIMEN TYPE : NULL
REMARK 240 DATA ACQUISITION
REMARK 240 DATE OF DATA COLLECTION : 04-APR-19
REMARK 240 TEMPERATURE (KELVIN) : 100.0
REMARK 240 PH : 7.00
REMARK 240 NUMBER OF CRYSTALS USED : NULL
REMARK 240 MICROSCOPE MODEL : FEI TITAN
REMARK 240 DETECTOR TYPE : GATAN K2 IS (4K X 4K)
REMARK 240 ACCELERATION VOLTAGE (KV) : 300
REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 405
REMARK 240 RESOLUTION RANGE HIGH (A) : 1.350
REMARK 240 RESOLUTION RANGE LOW (A) : 5.745
REMARK 240 DATA SCALING SOFTWARE : XSCALE
REMARK 240 COMPLETENESS FOR RANGE (%) : 68.6
REMARK 240 DATA REDUNDANCY : 4.891
REMARK 240 IN THE HIGHEST RESOLUTION SHELL
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :1.35
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.56
REMARK 240 COMPLETENESS FOR SHELL (%) : 71.9
REMARK 240 DATA REDUNDANCY IN SHELL : 4.04
REMARK 240 R MERGE FOR SHELL (I) : 0.37000
REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 240 SOFTWARE USED : NULL
REMARK 240 STARTING MODEL : NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 2.35500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.45000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.74500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.45000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 2.35500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.74500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 770 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 6UOP A 24 29 UNP Q6I5C3 PYL5_ORYSJ 24 29
SEQRES 1 A 6 ALA VAL ALA ALA GLY ALA
CRYST1 4.710 11.490 38.900 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.212314 0.000000 0.000000 0.00000
SCALE2 0.000000 0.087032 0.000000 0.00000
SCALE3 0.000000 0.000000 0.025707 0.00000
ATOM 1 N ALA A 24 6.188 3.020 17.886 1.00 16.68 N
ATOM 2 CA ALA A 24 5.770 3.565 16.555 1.00 8.77 C
ATOM 3 C ALA A 24 6.405 2.718 15.469 1.00 7.96 C
ATOM 4 O ALA A 24 7.605 2.469 15.504 1.00 11.16 O
ATOM 5 CB ALA A 24 6.220 4.984 16.420 1.00 15.60 C
ATOM 6 H1 ALA A 24 5.502 3.059 18.452 1.00 20.17 H
ATOM 7 H2 ALA A 24 6.446 2.173 17.792 1.00 20.17 H
ATOM 8 H3 ALA A 24 6.864 3.502 18.206 1.00 20.17 H
ATOM 9 HA ALA A 24 4.804 3.550 16.466 1.00 10.68 H
ATOM 10 HB1 ALA A 24 6.009 5.299 15.528 1.00 18.89 H
ATOM 11 HB2 ALA A 24 5.759 5.526 17.080 1.00 18.89 H
ATOM 12 HB3 ALA A 24 7.178 5.027 16.568 1.00 18.89 H
ATOM 13 N VAL A 25 5.603 2.265 14.510 1.00 8.68 N
ATOM 14 CA VAL A 25 6.069 1.382 13.445 1.00 6.47 C
ATOM 15 C VAL A 25 5.404 1.839 12.159 1.00 2.24 C
ATOM 16 O VAL A 25 4.178 1.972 12.106 1.00 4.57 O
ATOM 17 CB VAL A 25 5.747 -0.115 13.688 1.00 9.89 C
ATOM 18 CG1 VAL A 25 6.267 -0.952 12.532 1.00 10.39 C
ATOM 19 CG2 VAL A 25 6.363 -0.629 14.975 1.00 8.18 C
ATOM 20 H VAL A 25 4.767 2.459 14.454 1.00 10.58 H
ATOM 21 HA VAL A 25 7.034 1.464 13.378 1.00 7.92 H
ATOM 22 HB VAL A 25 4.783 -0.197 13.758 1.00 12.03 H
ATOM 23 HG11 VAL A 25 6.321 -1.879 12.813 1.00 12.63 H
ATOM 24 HG12 VAL A 25 5.656 -0.869 11.782 1.00 12.63 H
ATOM 25 HG13 VAL A 25 7.146 -0.631 12.279 1.00 12.63 H
ATOM 26 HG21 VAL A 25 6.103 -1.555 15.102 1.00 9.97 H
ATOM 27 HG22 VAL A 25 7.329 -0.562 14.912 1.00 9.97 H
ATOM 28 HG23 VAL A 25 6.042 -0.091 15.716 1.00 9.97 H
ATOM 29 N ALA A 26 6.203 2.070 11.122 1.00 6.13 N
ATOM 30 CA ALA A 26 5.668 2.589 9.874 1.00 4.49 C
ATOM 31 C ALA A 26 6.398 2.004 8.683 1.00 6.41 C
ATOM 32 O ALA A 26 7.627 2.041 8.618 1.00 8.34 O
ATOM 33 CB ALA A 26 5.757 4.099 9.826 1.00 8.66 C
ATOM 34 H ALA A 26 7.052 1.935 11.120 1.00 7.52 H
ATOM 35 HA ALA A 26 4.739 2.315 9.810 1.00 5.55 H
ATOM 36 HB1 ALA A 26 5.478 4.405 8.949 1.00 10.55 H
ATOM 37 HB2 ALA A 26 5.174 4.472 10.506 1.00 10.55 H
ATOM 38 HB3 ALA A 26 6.674 4.367 9.993 1.00 10.55 H
ATOM 39 N ALA A 27 5.634 1.509 7.735 1.00 1.68 N
ATOM 40 CA ALA A 27 6.143 0.817 6.575 1.00 3.99 C
ATOM 41 C ALA A 27 5.478 1.375 5.335 1.00 3.26 C
ATOM 42 O ALA A 27 4.271 1.600 5.324 1.00 3.78 O
ATOM 43 CB ALA A 27 5.758 -0.674 6.681 1.00 5.33 C
ATOM 44 H ALA A 27 4.776 1.565 7.741 1.00 2.18 H
ATOM 45 HA ALA A 27 7.104 0.929 6.502 1.00 4.95 H
ATOM 46 HB1 ALA A 27 6.042 -1.131 5.873 1.00 6.56 H
ATOM 47 HB2 ALA A 27 6.201 -1.060 7.452 1.00 6.56 H
ATOM 48 HB3 ALA A 27 4.796 -0.746 6.781 1.00 6.56 H
ATOM 49 N GLY A 28 6.265 1.575 4.288 1.00 4.72 N
ATOM 50 CA GLY A 28 5.711 1.908 2.997 1.00 9.85 C
ATOM 51 C GLY A 28 6.329 3.119 2.342 1.00 12.87 C
ATOM 52 O GLY A 28 7.547 3.175 2.138 1.00 11.67 O
ATOM 53 H GLY A 28 7.123 1.523 4.305 1.00 5.83 H
ATOM 54 HA2 GLY A 28 5.834 1.153 2.401 1.00 11.98 H
ATOM 55 HA3 GLY A 28 4.761 2.078 3.099 1.00 11.98 H
ATOM 56 N ALA A 29 5.492 4.081 1.979 1.00 8.08 N
ATOM 57 CA ALA A 29 5.971 5.227 1.229 1.00 20.33 C
ATOM 58 C ALA A 29 4.828 6.156 0.813 1.00 24.39 C
ATOM 59 O ALA A 29 4.759 6.636 -0.326 1.00 23.02 O
ATOM 60 CB ALA A 29 6.765 4.760 0.012 1.00 19.67 C
ATOM 61 OXT ALA A 29 3.944 6.468 1.616 1.00 25.12 O
ATOM 62 H ALA A 29 4.650 4.091 2.155 1.00 9.86 H
TER 63 ALA A 29
MASTER 164 0 0 0 0 0 0 6 32 1 0 1
END