data_6O4J
#
_entry.id 6O4J
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.397
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6O4J pdb_00006o4j 10.2210/pdb6o4j/pdb
WWPDB D_1000239957 ? ?
EMDB EMD-0619 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2019-10-30
2 'Structure model' 1 1 2019-12-18
3 'Structure model' 1 2 2023-10-11
4 'Structure model' 1 3 2024-10-23
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Author supporting evidence'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Refinement description'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' pdbx_audit_support
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' database_2
5 3 'Structure model' em_3d_fitting_list
6 3 'Structure model' pdbx_initial_refinement_model
7 3 'Structure model' struct_ncs_dom_lim
8 4 'Structure model' em_admin
9 4 'Structure model' pdbx_entry_details
10 4 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_pdbx_audit_support.funding_organization'
2 3 'Structure model' '_database_2.pdbx_DOI'
3 3 'Structure model' '_database_2.pdbx_database_accession'
4 3 'Structure model' '_em_3d_fitting_list.accession_code'
5 3 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id'
6 3 'Structure model' '_em_3d_fitting_list.source_name'
7 3 'Structure model' '_em_3d_fitting_list.type'
8 3 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id'
9 3 'Structure model' '_struct_ncs_dom_lim.beg_label_asym_id'
10 3 'Structure model' '_struct_ncs_dom_lim.beg_label_comp_id'
11 3 'Structure model' '_struct_ncs_dom_lim.beg_label_seq_id'
12 3 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id'
13 3 'Structure model' '_struct_ncs_dom_lim.end_label_asym_id'
14 3 'Structure model' '_struct_ncs_dom_lim.end_label_comp_id'
15 3 'Structure model' '_struct_ncs_dom_lim.end_label_seq_id'
16 4 'Structure model' '_em_admin.last_update'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6O4J
_pdbx_database_status.recvd_initial_deposition_date 2019-02-28
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name EMDB
_pdbx_database_related.details 'Amyloid Beta KLVFFAENVGS 16-26 D23N Iowa mutation'
_pdbx_database_related.db_id EMD-0619
_pdbx_database_related.content_type 'associated EM volume'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Griner, S.L.' 1 0000-0002-4500-2419
'Sawaya, M.R.' 2 0000-0003-0874-9043
'Rodriguez, J.A.' 3 0000-0001-8471-2504
'Cascio, D.' 4 0000-0002-3877-6803
'Gonen, T.' 5 0000-0002-9254-4069
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Elife
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2050-084X
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 8
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title 'Structure based inhibitors of Amyloid Beta core suggest a common interface with Tau.'
_citation.year 2019
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.7554/eLife.46924
_citation.pdbx_database_id_PubMed 31612856
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Griner, S.L.' 1 ?
primary 'Seidler, P.' 2 ?
primary 'Bowler, J.' 3 ?
primary 'Murray, K.A.' 4 ?
primary 'Yang, T.P.' 5 0000-0002-4479-5154
primary 'Sahay, S.' 6 ?
primary 'Sawaya, M.R.' 7 ?
primary 'Cascio, D.' 8 ?
primary 'Rodriguez, J.A.' 9 ?
primary 'Philipp, S.' 10 ?
primary 'Sosna, J.' 11 ?
primary 'Glabe, C.G.' 12 ?
primary 'Gonen, T.' 13 0000-0002-9254-4069
primary 'Eisenberg, D.S.' 14 0000-0003-2432-5419
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description 'Amyloid-beta precursor protein'
_entity.formula_weight 1235.432
_entity.pdbx_number_of_molecules 2
_entity.pdbx_ec ?
_entity.pdbx_mutation D23N
_entity.pdbx_fragment 'UNP residues 687-697'
_entity.details ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
;APP, ABPP, APPI, Alzheimer disease amyloid protein, Amyloid precursor protein, Amyloid-beta A4 protein, Cerebral vascular amyloid peptide, CVAP, PreA4, Protease nexin-II, PN-II
;
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(ACE)KLVFFAENVGS(NH2)'
_entity_poly.pdbx_seq_one_letter_code_can XKLVFFAENVGSX
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ACE n
1 2 LYS n
1 3 LEU n
1 4 VAL n
1 5 PHE n
1 6 PHE n
1 7 ALA n
1 8 GLU n
1 9 ASN n
1 10 VAL n
1 11 GLY n
1 12 SER n
1 13 NH2 n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 13
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ACE 1 15 15 ACE ACE A . n
A 1 2 LYS 2 16 16 LYS LYS A . n
A 1 3 LEU 3 17 17 LEU LEU A . n
A 1 4 VAL 4 18 18 VAL VAL A . n
A 1 5 PHE 5 19 19 PHE PHE A . n
A 1 6 PHE 6 20 20 PHE PHE A . n
A 1 7 ALA 7 21 21 ALA ALA A . n
A 1 8 GLU 8 22 22 GLU GLU A . n
A 1 9 ASN 9 23 23 ASN ASN A . n
A 1 10 VAL 10 24 24 VAL VAL A . n
A 1 11 GLY 11 25 25 GLY GLY A . n
A 1 12 SER 12 26 26 SER SER A . n
A 1 13 NH2 13 27 27 NH2 NH2 A . n
B 1 1 ACE 1 15 15 ACE ACE B . n
B 1 2 LYS 2 16 16 LYS LYS B . n
B 1 3 LEU 3 17 17 LEU LEU B . n
B 1 4 VAL 4 18 18 VAL VAL B . n
B 1 5 PHE 5 19 19 PHE PHE B . n
B 1 6 PHE 6 20 20 PHE PHE B . n
B 1 7 ALA 7 21 21 ALA ALA B . n
B 1 8 GLU 8 22 22 GLU GLU B . n
B 1 9 ASN 9 23 23 ASN ASN B . n
B 1 10 VAL 10 24 24 VAL VAL B . n
B 1 11 GLY 11 25 25 GLY GLY B . n
B 1 12 SER 12 26 26 SER SER B . n
B 1 13 NH2 13 27 27 NH2 NH2 B . n
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1
? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2
? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++
http://www.phenix-online.org/ ? PHENIX ? ? package . 3
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? .
5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 114.180
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 6O4J
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 11.670
_cell.length_a_esd ?
_cell.length_b 51.910
_cell.length_b_esd ?
_cell.length_c 12.760
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6O4J
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6O4J
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 1.43
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method UNSPECIFIED
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_details ?
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.pdbx_serial_crystal_experiment ?
#
_diffrn_detector.area_resol_mean ?
_diffrn_detector.details ?
_diffrn_detector.detector ?
_diffrn_detector.diffrn_id 1
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_collection_date 2014-11-07
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.type ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type electron
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.000
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source 'ELECTRON MICROSCOPE'
_diffrn_source.take-off_angle ?
_diffrn_source.target ?
_diffrn_source.type ?
_diffrn_source.voltage ?
#
_reflns.B_iso_Wilson_estimate 7.230
_reflns.entry_id 6O4J
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.400
_reflns.d_resolution_low 11.640
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 2355
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 85.400
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 20.211
_reflns.pdbx_Rmerge_I_obs 0.240
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 9.060
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.886
_reflns.pdbx_scaling_rejects 15
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.246
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 47598
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.995
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.400 1.440 ? 2.880 ? 1966 209 ? 163 78.000 ? ? ? ? 0.652 ? ? ? ? ? ? ? ? 12.061 ? ? ? ? 0.682 ? ? 1 1 0.697 ?
1.440 1.480 ? 4.040 ? 2641 203 ? 169 83.300 ? ? ? ? 0.576 ? ? ? ? ? ? ? ? 15.627 ? ? ? ? 0.596 ? ? 2 1 0.671 ?
1.480 1.520 ? 4.870 ? 2499 169 ? 153 90.500 ? ? ? ? 0.489 ? ? ? ? ? ? ? ? 16.333 ? ? ? ? 0.503 ? ? 3 1 0.788 ?
1.520 1.570 ? 6.450 ? 3239 189 ? 164 86.800 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 19.750 ? ? ? ? 0.406 ? ? 4 1 0.923 ?
1.570 1.620 ? 6.490 ? 3893 194 ? 169 87.100 ? ? ? ? 0.471 ? ? ? ? ? ? ? ? 23.036 ? ? ? ? 0.481 ? ? 5 1 0.930 ?
1.620 1.680 ? 6.810 ? 3633 189 ? 154 81.500 ? ? ? ? 0.468 ? ? ? ? ? ? ? ? 23.591 ? ? ? ? 0.479 ? ? 6 1 0.882 ?
1.680 1.740 ? 6.840 ? 2443 144 ? 127 88.200 ? ? ? ? 0.394 ? ? ? ? ? ? ? ? 19.236 ? ? ? ? 0.404 ? ? 7 1 0.899 ?
1.740 1.810 ? 8.410 ? 3453 159 ? 143 89.900 ? ? ? ? 0.373 ? ? ? ? ? ? ? ? 24.147 ? ? ? ? 0.380 ? ? 8 1 0.956 ?
1.810 1.890 ? 8.900 ? 3144 170 ? 144 84.700 ? ? ? ? 0.325 ? ? ? ? ? ? ? ? 21.833 ? ? ? ? 0.332 ? ? 9 1 0.984 ?
1.890 1.980 ? 11.660 ? 2661 150 ? 125 83.300 ? ? ? ? 0.262 ? ? ? ? ? ? ? ? 21.288 ? ? ? ? 0.269 ? ? 10 1 0.987 ?
1.980 2.090 ? 11.430 ? 2581 135 ? 120 88.900 ? ? ? ? 0.277 ? ? ? ? ? ? ? ? 21.508 ? ? ? ? 0.284 ? ? 11 1 0.987 ?
2.090 2.220 ? 12.830 ? 2640 138 ? 120 87.000 ? ? ? ? 0.257 ? ? ? ? ? ? ? ? 22.000 ? ? ? ? 0.262 ? ? 12 1 0.977 ?
2.220 2.370 ? 11.670 ? 2309 129 ? 110 85.300 ? ? ? ? 0.269 ? ? ? ? ? ? ? ? 20.991 ? ? ? ? 0.276 ? ? 13 1 0.961 ?
2.370 2.560 ? 13.440 ? 2353 121 ? 104 86.000 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? 22.625 ? ? ? ? 0.221 ? ? 14 1 0.993 ?
2.560 2.800 ? 12.620 ? 1772 102 ? 87 85.300 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? 20.368 ? ? ? ? 0.223 ? ? 15 1 0.986 ?
2.800 3.130 ? 14.750 ? 1945 105 ? 86 81.900 ? ? ? ? 0.217 ? ? ? ? ? ? ? ? 22.616 ? ? ? ? 0.221 ? ? 16 1 0.983 ?
3.130 3.620 ? 15.480 ? 1451 75 ? 70 93.300 ? ? ? ? 0.179 ? ? ? ? ? ? ? ? 20.729 ? ? ? ? 0.183 ? ? 17 1 0.994 ?
3.620 4.430 ? 17.460 ? 1638 90 ? 73 81.100 ? ? ? ? 0.157 ? ? ? ? ? ? ? ? 22.438 ? ? ? ? 0.160 ? ? 18 1 0.995 ?
4.430 6.270 ? 16.610 ? 1004 57 ? 49 86.000 ? ? ? ? 0.163 ? ? ? ? ? ? ? ? 20.490 ? ? ? ? 0.167 ? ? 19 1 0.998 ?
6.270 11.640 ? 11.440 ? 333 29 ? 25 86.200 ? ? ? ? 0.298 ? ? ? ? ? ? ? ? 13.320 ? ? ? ? 0.308 ? ? 20 1 0.987 ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 23.080
_refine.B_iso_mean 9.4646
_refine.B_iso_min 1.470
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6O4J
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.4020
_refine.ls_d_res_low 11.6400
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 2354
_refine.ls_number_reflns_R_free 236
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 86.1600
_refine.ls_percent_reflns_R_free 10.0300
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2419
_refine.ls_R_factor_R_free 0.2832
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2368
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.520
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'PDB entry 2Y2A'
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 32.5100
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.2000
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.d_res_high 1.4020
_refine_hist.d_res_low 11.6400
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 178
_refine_hist.pdbx_number_residues_total 26
_refine_hist.pdbx_number_atoms_protein 178
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON CRYSTALLOGRAPHY' ? 0.014 ? 180 ? f_bond_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 1.458 ? 240 ? f_angle_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.067 ? 26 ? f_chiral_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.006 ? 32 ? f_plane_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 15.776 ? 60 ? f_dihedral_angle_d ? ?
#
loop_
_refine_ls_restr_ncs.pdbx_ordinal
_refine_ls_restr_ncs.pdbx_refine_id
_refine_ls_restr_ncs.pdbx_ens_id
_refine_ls_restr_ncs.dom_id
_refine_ls_restr_ncs.pdbx_type
_refine_ls_restr_ncs.pdbx_auth_asym_id
_refine_ls_restr_ncs.pdbx_number
_refine_ls_restr_ncs.pdbx_rms
_refine_ls_restr_ncs.weight_position
_refine_ls_restr_ncs.ncs_model_details
_refine_ls_restr_ncs.rms_dev_position
_refine_ls_restr_ncs.rms_dev_B_iso
_refine_ls_restr_ncs.weight_B_iso
_refine_ls_restr_ncs.pdbx_asym_id
_refine_ls_restr_ncs.pdbx_weight
1 'ELECTRON CRYSTALLOGRAPHY' 1 1 TORSIONAL A 80 24.960 ? ? ? ? ? ? ?
2 'ELECTRON CRYSTALLOGRAPHY' 1 2 TORSIONAL B 80 24.960 ? ? ? ? ? ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'ELECTRON CRYSTALLOGRAPHY' 1.4017 1.7650 1153 . 115 1038 86.0000 . . . 0.3334 0.0000 0.2802 . . . . . . 2 . . .
'ELECTRON CRYSTALLOGRAPHY' 1.7650 11.6409 1201 . 121 1080 87.0000 . . . 0.2623 0.0000 0.2187 . . . . . . 2 . . .
#
loop_
_struct_ncs_dom.pdbx_ens_id
_struct_ncs_dom.id
_struct_ncs_dom.details
1 1 'chain A'
1 2 'chain B'
#
loop_
_struct_ncs_dom_lim.pdbx_ens_id
_struct_ncs_dom_lim.dom_id
_struct_ncs_dom_lim.pdbx_component_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.beg_label_alt_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_ncs_dom_lim.end_label_alt_id
_struct_ncs_dom_lim.beg_auth_asym_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_auth_seq_id
_struct_ncs_dom_lim.end_auth_asym_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_auth_seq_id
_struct_ncs_dom_lim.pdbx_refine_code
_struct_ncs_dom_lim.selection_details
1 1 1 A ACE 1 . A NH2 13 . A ACE 15 A NH2 27 ? 'chain A'
1 2 1 B ACE 1 . B NH2 13 . B ACE 15 B NH2 27 ? 'chain B'
#
_struct_ncs_ens.id 1
_struct_ncs_ens.details ?
#
_struct.entry_id 6O4J
_struct.title 'Amyloid Beta KLVFFAENVGS 16-26 D23N Iowa mutation'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6O4J
_struct_keywords.text 'amyloid, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code A4_HUMAN
_struct_ref.pdbx_db_accession P05067
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code KLVFFAEDVGS
_struct_ref.pdbx_align_begin 687
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 6O4J A 2 ? 12 ? P05067 687 ? 697 ? 16 26
2 1 6O4J B 2 ? 12 ? P05067 687 ? 697 ? 16 26
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 6O4J ACE A 1 ? UNP P05067 ? ? acetylation 15 1
1 6O4J ASN A 9 ? UNP P05067 ASP 694 'engineered mutation' 23 2
1 6O4J NH2 A 13 ? UNP P05067 ? ? amidation 27 3
2 6O4J ACE B 1 ? UNP P05067 ? ? acetylation 15 4
2 6O4J ASN B 9 ? UNP P05067 ASP 694 'engineered mutation' 23 5
2 6O4J NH2 B 13 ? UNP P05067 ? ? amidation 27 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dodecameric
_pdbx_struct_assembly.oligomeric_count 12
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B
1 2 A,B
1 3 A,B
1 4 A,B
1 5 A,B
1 6 A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -11.6700000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 11.6700000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 -5.2265549370 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 11.6404778033
5 'crystal symmetry operation' 1_456 x-1,y,z+1 1.0000000000 0.0000000000 0.0000000000 -16.8965549370 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 11.6404778033
6 'crystal symmetry operation' 1_656 x+1,y,z+1 1.0000000000 0.0000000000 0.0000000000 6.4434450630 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 11.6404778033
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A ACE 1 C ? ? ? 1_555 A LYS 2 N ? ? A ACE 15 A LYS 16 1_555 ? ? ? ? ? ? ? 1.325 ? ?
covale2 covale both ? A SER 12 C ? ? ? 1_555 A NH2 13 N ? ? A SER 26 A NH2 27 1_555 ? ? ? ? ? ? ? 1.234 ? ?
covale3 covale both ? B ACE 1 C ? ? ? 1_555 B LYS 2 N ? ? B ACE 15 B LYS 16 1_555 ? ? ? ? ? ? ? 1.326 ? ?
covale4 covale both ? B SER 12 C ? ? ? 1_555 B NH2 13 N ? ? B SER 26 B NH2 27 1_555 ? ? ? ? ? ? ? 1.236 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 ACE A 1 ? LYS A 2 ? ACE A 15 ? 1_555 LYS A 16 ? 1_555 . . LYS 20 ACE None 'Terminal acetylation'
2 ACE B 1 ? LYS B 2 ? ACE B 15 ? 1_555 LYS B 16 ? 1_555 . . LYS 20 ACE None 'Terminal acetylation'
3 NH2 A 13 ? SER A 12 ? NH2 A 27 ? 1_555 SER A 26 ? 1_555 . . SER 6 NH2 None 'Terminal amidation'
4 NH2 B 13 ? SER B 12 ? NH2 B 27 ? 1_555 SER B 26 ? 1_555 . . SER 6 NH2 None 'Terminal amidation'
#
_struct_sheet.id AA1
_struct_sheet.type ?
_struct_sheet.number_strands 2
_struct_sheet.details ?
#
_struct_sheet_order.sheet_id AA1
_struct_sheet_order.range_id_1 1
_struct_sheet_order.range_id_2 2
_struct_sheet_order.offset ?
_struct_sheet_order.sense anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 LEU A 3 ? ALA A 7 ? LEU A 17 ALA A 21
AA1 2 LYS B 2 ? PHE B 6 ? LYS B 16 PHE B 20
#
_pdbx_struct_sheet_hbond.sheet_id AA1
_pdbx_struct_sheet_hbond.range_id_1 1
_pdbx_struct_sheet_hbond.range_id_2 2
_pdbx_struct_sheet_hbond.range_1_label_atom_id N
_pdbx_struct_sheet_hbond.range_1_label_comp_id ALA
_pdbx_struct_sheet_hbond.range_1_label_asym_id A
_pdbx_struct_sheet_hbond.range_1_label_seq_id 7
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_1_auth_atom_id N
_pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA
_pdbx_struct_sheet_hbond.range_1_auth_asym_id A
_pdbx_struct_sheet_hbond.range_1_auth_seq_id 21
_pdbx_struct_sheet_hbond.range_2_label_atom_id O
_pdbx_struct_sheet_hbond.range_2_label_comp_id LYS
_pdbx_struct_sheet_hbond.range_2_label_asym_id B
_pdbx_struct_sheet_hbond.range_2_label_seq_id 2
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_2_auth_atom_id O
_pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS
_pdbx_struct_sheet_hbond.range_2_auth_asym_id B
_pdbx_struct_sheet_hbond.range_2_auth_seq_id 16
#
_pdbx_entry_details.entry_id 6O4J
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_em_3d_fitting.entry_id 6O4J
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol OTHER
_em_3d_fitting.ref_space RECIPROCAL
_em_3d_fitting.target_criteria 'Maximum likelihood'
_em_3d_fitting.method ?
#
_em_3d_fitting_list.3d_fitting_id 1
_em_3d_fitting_list.id 1
_em_3d_fitting_list.details ?
_em_3d_fitting_list.pdb_chain_id ?
_em_3d_fitting_list.pdb_chain_residue_range ?
_em_3d_fitting_list.pdb_entry_id 2Y2A
_em_3d_fitting_list.initial_refinement_model_id 1
_em_3d_fitting_list.chain_id ?
_em_3d_fitting_list.chain_residue_range ?
_em_3d_fitting_list.source_name PDB
_em_3d_fitting_list.type 'experimental model'
_em_3d_fitting_list.accession_code 2Y2A
#
_em_3d_reconstruction.entry_id 6O4J
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution 1.402
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
_em_3d_reconstruction.citation_id ?
_em_3d_reconstruction.euler_angles_details ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 8.0
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'Fibrils of Amyloid Beta segment 16-26'
_em_entity_assembly.source NATURAL
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_image_scans.entry_id 6O4J
_em_image_scans.id 1
_em_image_scans.dimension_height 2048
_em_image_scans.dimension_width 2048
_em_image_scans.frames_per_image ?
_em_image_scans.image_recording_id 1
_em_image_scans.sampling_size ?
_em_image_scans.scanner_model ?
_em_image_scans.used_frames_per_image ?
_em_image_scans.citation_id ?
_em_image_scans.number_digital_images ?
_em_image_scans.od_range ?
_em_image_scans.quant_bit_size ?
_em_image_scans.details ?
#
_em_imaging.id 1
_em_imaging.entry_id 6O4J
_em_imaging.accelerating_voltage 200
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen NITROGEN
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TECNAI F20'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER'
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_sample_support.citation_id ?
_em_sample_support.details unspecified
_em_sample_support.film_material ?
_em_sample_support.grid_material ?
_em_sample_support.grid_mesh_size ?
_em_sample_support.grid_type ?
_em_sample_support.id 1
_em_sample_support.method ?
_em_sample_support.specimen_id 1
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature ?
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity ?
_em_vitrification.instrument 'FEI VITROBOT MARK IV'
_em_vitrification.entry_id 6O4J
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 6O4J
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ACE C C N N 1
ACE O O N N 2
ACE CH3 C N N 3
ACE H H N N 4
ACE H1 H N N 5
ACE H2 H N N 6
ACE H3 H N N 7
ALA N N N N 8
ALA CA C N S 9
ALA C C N N 10
ALA O O N N 11
ALA CB C N N 12
ALA OXT O N N 13
ALA H H N N 14
ALA H2 H N N 15
ALA HA H N N 16
ALA HB1 H N N 17
ALA HB2 H N N 18
ALA HB3 H N N 19
ALA HXT H N N 20
ASN N N N N 21
ASN CA C N S 22
ASN C C N N 23
ASN O O N N 24
ASN CB C N N 25
ASN CG C N N 26
ASN OD1 O N N 27
ASN ND2 N N N 28
ASN OXT O N N 29
ASN H H N N 30
ASN H2 H N N 31
ASN HA H N N 32
ASN HB2 H N N 33
ASN HB3 H N N 34
ASN HD21 H N N 35
ASN HD22 H N N 36
ASN HXT H N N 37
ASP N N N N 38
ASP CA C N S 39
ASP C C N N 40
ASP O O N N 41
ASP CB C N N 42
ASP CG C N N 43
ASP OD1 O N N 44
ASP OD2 O N N 45
ASP OXT O N N 46
ASP H H N N 47
ASP H2 H N N 48
ASP HA H N N 49
ASP HB2 H N N 50
ASP HB3 H N N 51
ASP HD2 H N N 52
ASP HXT H N N 53
GLU N N N N 54
GLU CA C N S 55
GLU C C N N 56
GLU O O N N 57
GLU CB C N N 58
GLU CG C N N 59
GLU CD C N N 60
GLU OE1 O N N 61
GLU OE2 O N N 62
GLU OXT O N N 63
GLU H H N N 64
GLU H2 H N N 65
GLU HA H N N 66
GLU HB2 H N N 67
GLU HB3 H N N 68
GLU HG2 H N N 69
GLU HG3 H N N 70
GLU HE2 H N N 71
GLU HXT H N N 72
GLY N N N N 73
GLY CA C N N 74
GLY C C N N 75
GLY O O N N 76
GLY OXT O N N 77
GLY H H N N 78
GLY H2 H N N 79
GLY HA2 H N N 80
GLY HA3 H N N 81
GLY HXT H N N 82
LEU N N N N 83
LEU CA C N S 84
LEU C C N N 85
LEU O O N N 86
LEU CB C N N 87
LEU CG C N N 88
LEU CD1 C N N 89
LEU CD2 C N N 90
LEU OXT O N N 91
LEU H H N N 92
LEU H2 H N N 93
LEU HA H N N 94
LEU HB2 H N N 95
LEU HB3 H N N 96
LEU HG H N N 97
LEU HD11 H N N 98
LEU HD12 H N N 99
LEU HD13 H N N 100
LEU HD21 H N N 101
LEU HD22 H N N 102
LEU HD23 H N N 103
LEU HXT H N N 104
LYS N N N N 105
LYS CA C N S 106
LYS C C N N 107
LYS O O N N 108
LYS CB C N N 109
LYS CG C N N 110
LYS CD C N N 111
LYS CE C N N 112
LYS NZ N N N 113
LYS OXT O N N 114
LYS H H N N 115
LYS H2 H N N 116
LYS HA H N N 117
LYS HB2 H N N 118
LYS HB3 H N N 119
LYS HG2 H N N 120
LYS HG3 H N N 121
LYS HD2 H N N 122
LYS HD3 H N N 123
LYS HE2 H N N 124
LYS HE3 H N N 125
LYS HZ1 H N N 126
LYS HZ2 H N N 127
LYS HZ3 H N N 128
LYS HXT H N N 129
NH2 N N N N 130
NH2 HN1 H N N 131
NH2 HN2 H N N 132
PHE N N N N 133
PHE CA C N S 134
PHE C C N N 135
PHE O O N N 136
PHE CB C N N 137
PHE CG C Y N 138
PHE CD1 C Y N 139
PHE CD2 C Y N 140
PHE CE1 C Y N 141
PHE CE2 C Y N 142
PHE CZ C Y N 143
PHE OXT O N N 144
PHE H H N N 145
PHE H2 H N N 146
PHE HA H N N 147
PHE HB2 H N N 148
PHE HB3 H N N 149
PHE HD1 H N N 150
PHE HD2 H N N 151
PHE HE1 H N N 152
PHE HE2 H N N 153
PHE HZ H N N 154
PHE HXT H N N 155
SER N N N N 156
SER CA C N S 157
SER C C N N 158
SER O O N N 159
SER CB C N N 160
SER OG O N N 161
SER OXT O N N 162
SER H H N N 163
SER H2 H N N 164
SER HA H N N 165
SER HB2 H N N 166
SER HB3 H N N 167
SER HG H N N 168
SER HXT H N N 169
VAL N N N N 170
VAL CA C N S 171
VAL C C N N 172
VAL O O N N 173
VAL CB C N N 174
VAL CG1 C N N 175
VAL CG2 C N N 176
VAL OXT O N N 177
VAL H H N N 178
VAL H2 H N N 179
VAL HA H N N 180
VAL HB H N N 181
VAL HG11 H N N 182
VAL HG12 H N N 183
VAL HG13 H N N 184
VAL HG21 H N N 185
VAL HG22 H N N 186
VAL HG23 H N N 187
VAL HXT H N N 188
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ACE C O doub N N 1
ACE C CH3 sing N N 2
ACE C H sing N N 3
ACE CH3 H1 sing N N 4
ACE CH3 H2 sing N N 5
ACE CH3 H3 sing N N 6
ALA N CA sing N N 7
ALA N H sing N N 8
ALA N H2 sing N N 9
ALA CA C sing N N 10
ALA CA CB sing N N 11
ALA CA HA sing N N 12
ALA C O doub N N 13
ALA C OXT sing N N 14
ALA CB HB1 sing N N 15
ALA CB HB2 sing N N 16
ALA CB HB3 sing N N 17
ALA OXT HXT sing N N 18
ASN N CA sing N N 19
ASN N H sing N N 20
ASN N H2 sing N N 21
ASN CA C sing N N 22
ASN CA CB sing N N 23
ASN CA HA sing N N 24
ASN C O doub N N 25
ASN C OXT sing N N 26
ASN CB CG sing N N 27
ASN CB HB2 sing N N 28
ASN CB HB3 sing N N 29
ASN CG OD1 doub N N 30
ASN CG ND2 sing N N 31
ASN ND2 HD21 sing N N 32
ASN ND2 HD22 sing N N 33
ASN OXT HXT sing N N 34
ASP N CA sing N N 35
ASP N H sing N N 36
ASP N H2 sing N N 37
ASP CA C sing N N 38
ASP CA CB sing N N 39
ASP CA HA sing N N 40
ASP C O doub N N 41
ASP C OXT sing N N 42
ASP CB CG sing N N 43
ASP CB HB2 sing N N 44
ASP CB HB3 sing N N 45
ASP CG OD1 doub N N 46
ASP CG OD2 sing N N 47
ASP OD2 HD2 sing N N 48
ASP OXT HXT sing N N 49
GLU N CA sing N N 50
GLU N H sing N N 51
GLU N H2 sing N N 52
GLU CA C sing N N 53
GLU CA CB sing N N 54
GLU CA HA sing N N 55
GLU C O doub N N 56
GLU C OXT sing N N 57
GLU CB CG sing N N 58
GLU CB HB2 sing N N 59
GLU CB HB3 sing N N 60
GLU CG CD sing N N 61
GLU CG HG2 sing N N 62
GLU CG HG3 sing N N 63
GLU CD OE1 doub N N 64
GLU CD OE2 sing N N 65
GLU OE2 HE2 sing N N 66
GLU OXT HXT sing N N 67
GLY N CA sing N N 68
GLY N H sing N N 69
GLY N H2 sing N N 70
GLY CA C sing N N 71
GLY CA HA2 sing N N 72
GLY CA HA3 sing N N 73
GLY C O doub N N 74
GLY C OXT sing N N 75
GLY OXT HXT sing N N 76
LEU N CA sing N N 77
LEU N H sing N N 78
LEU N H2 sing N N 79
LEU CA C sing N N 80
LEU CA CB sing N N 81
LEU CA HA sing N N 82
LEU C O doub N N 83
LEU C OXT sing N N 84
LEU CB CG sing N N 85
LEU CB HB2 sing N N 86
LEU CB HB3 sing N N 87
LEU CG CD1 sing N N 88
LEU CG CD2 sing N N 89
LEU CG HG sing N N 90
LEU CD1 HD11 sing N N 91
LEU CD1 HD12 sing N N 92
LEU CD1 HD13 sing N N 93
LEU CD2 HD21 sing N N 94
LEU CD2 HD22 sing N N 95
LEU CD2 HD23 sing N N 96
LEU OXT HXT sing N N 97
LYS N CA sing N N 98
LYS N H sing N N 99
LYS N H2 sing N N 100
LYS CA C sing N N 101
LYS CA CB sing N N 102
LYS CA HA sing N N 103
LYS C O doub N N 104
LYS C OXT sing N N 105
LYS CB CG sing N N 106
LYS CB HB2 sing N N 107
LYS CB HB3 sing N N 108
LYS CG CD sing N N 109
LYS CG HG2 sing N N 110
LYS CG HG3 sing N N 111
LYS CD CE sing N N 112
LYS CD HD2 sing N N 113
LYS CD HD3 sing N N 114
LYS CE NZ sing N N 115
LYS CE HE2 sing N N 116
LYS CE HE3 sing N N 117
LYS NZ HZ1 sing N N 118
LYS NZ HZ2 sing N N 119
LYS NZ HZ3 sing N N 120
LYS OXT HXT sing N N 121
NH2 N HN1 sing N N 122
NH2 N HN2 sing N N 123
PHE N CA sing N N 124
PHE N H sing N N 125
PHE N H2 sing N N 126
PHE CA C sing N N 127
PHE CA CB sing N N 128
PHE CA HA sing N N 129
PHE C O doub N N 130
PHE C OXT sing N N 131
PHE CB CG sing N N 132
PHE CB HB2 sing N N 133
PHE CB HB3 sing N N 134
PHE CG CD1 doub Y N 135
PHE CG CD2 sing Y N 136
PHE CD1 CE1 sing Y N 137
PHE CD1 HD1 sing N N 138
PHE CD2 CE2 doub Y N 139
PHE CD2 HD2 sing N N 140
PHE CE1 CZ doub Y N 141
PHE CE1 HE1 sing N N 142
PHE CE2 CZ sing Y N 143
PHE CE2 HE2 sing N N 144
PHE CZ HZ sing N N 145
PHE OXT HXT sing N N 146
SER N CA sing N N 147
SER N H sing N N 148
SER N H2 sing N N 149
SER CA C sing N N 150
SER CA CB sing N N 151
SER CA HA sing N N 152
SER C O doub N N 153
SER C OXT sing N N 154
SER CB OG sing N N 155
SER CB HB2 sing N N 156
SER CB HB3 sing N N 157
SER OG HG sing N N 158
SER OXT HXT sing N N 159
VAL N CA sing N N 160
VAL N H sing N N 161
VAL N H2 sing N N 162
VAL CA C sing N N 163
VAL CA CB sing N N 164
VAL CA HA sing N N 165
VAL C O doub N N 166
VAL C OXT sing N N 167
VAL CB CG1 sing N N 168
VAL CB CG2 sing N N 169
VAL CB HB sing N N 170
VAL CG1 HG11 sing N N 171
VAL CG1 HG12 sing N N 172
VAL CG1 HG13 sing N N 173
VAL CG2 HG21 sing N N 174
VAL CG2 HG22 sing N N 175
VAL CG2 HG23 sing N N 176
VAL OXT HXT sing N N 177
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90
_em_3d_crystal_entity.angle_beta 114.18
_em_3d_crystal_entity.angle_gamma 90
_em_3d_crystal_entity.length_a 11.67
_em_3d_crystal_entity.length_b 51.91
_em_3d_crystal_entity.length_c 12.76
_em_3d_crystal_entity.space_group_name p21
_em_3d_crystal_entity.space_group_num 4
#
_em_admin.entry_id 6O4J
_em_admin.current_status REL
_em_admin.deposition_date 2019-02-28
_em_admin.deposition_site RCSB
_em_admin.last_update 2024-10-23
_em_admin.map_release_date 2019-10-30
_em_admin.title 'Amyloid Beta KLVFFAENVGS 16-26 D23N Iowa mutation'
#
loop_
_em_buffer_component.buffer_id
_em_buffer_component.id
_em_buffer_component.concentration
_em_buffer_component.concentration_units
_em_buffer_component.formula
_em_buffer_component.name
1 1 200 mM MgCl2 'magnesium formate'
1 2 10 % C2H6OS DMSO
1 3 100 mM C4H11NO3 'Tris Base'
1 4 15 % C3H8O isopropanol
#
_em_crystal_formation.id 1
_em_crystal_formation.specimen_id 1
_em_crystal_formation.atmosphere air
_em_crystal_formation.details ?
_em_crystal_formation.instrument 'microcentrifuge tube'
_em_crystal_formation.lipid_mixture ?
_em_crystal_formation.lipid_protein_ratio ?
_em_crystal_formation.temperature 310
_em_crystal_formation.time 4
_em_crystal_formation.time_unit DAY
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 1840
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
_em_diffraction_shell.id 1
_em_diffraction_shell.em_diffraction_stats_id 1
_em_diffraction_shell.fourier_space_coverage 78.0
_em_diffraction_shell.high_resolution 1.40
_em_diffraction_shell.low_resolution 1.44
_em_diffraction_shell.multiplicity 12.1
_em_diffraction_shell.num_structure_factors 163
_em_diffraction_shell.phase_residual 0.01
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details ?
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 85.4
_em_diffraction_stats.high_resolution 1.40
_em_diffraction_stats.num_intensities_measured 47598
_em_diffraction_stats.num_structure_factors 2355
_em_diffraction_stats.overall_phase_error 0
_em_diffraction_stats.overall_phase_residual 0.01
_em_diffraction_stats.phase_error_rejection_criteria 0
_em_diffraction_stats.r_merge 0.240
_em_diffraction_stats.r_sym 0.240
#
_em_entity_assembly_molwt.entity_assembly_id 1
_em_entity_assembly_molwt.id 1
_em_entity_assembly_molwt.experimental_flag NO
_em_entity_assembly_molwt.units ?
_em_entity_assembly_molwt.value ?
#
_em_entity_assembly_naturalsource.id 1
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.ncbi_tax_id 9606
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism 'Homo sapiens'
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.03
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)'
_em_image_recording.num_diffraction_images 1331
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
_em_imaging_optics.id 1
_em_imaging_optics.imaging_id 1
_em_imaging_optics.chr_aberration_corrector ?
_em_imaging_optics.energyfilter_lower ?
_em_imaging_optics.energyfilter_name ?
_em_imaging_optics.energyfilter_upper ?
_em_imaging_optics.energyfilter_slit_width ?
_em_imaging_optics.phase_plate ?
_em_imaging_optics.sph_aberration_corrector ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? Coot ? ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ?
9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ?
11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ?
12 RECONSTRUCTION ? ? ? 1 ? ?
13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration 7.5
_em_specimen.details nanocrystals
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
_pdbx_audit_support.funding_organization 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number 'R01 AG029430'
_pdbx_audit_support.ordinal 1
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 2Y2A
_pdbx_initial_refinement_model.details 'PDB entry 2Y2A'
#
_atom_sites.entry_id 6O4J
_atom_sites.fract_transf_matrix[1][1] 0.085690
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.038475
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.019264
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.085907
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C . ACE A 1 1 ? 5.068 8.573 8.839 1.00 11.66 ? 15 ACE A C 1
HETATM 2 O O . ACE A 1 1 ? 6.002 8.093 9.466 1.00 14.02 ? 15 ACE A O 1
HETATM 3 C CH3 . ACE A 1 1 ? 5.313 9.279 7.510 1.00 7.84 ? 15 ACE A CH3 1
ATOM 4 N N . LYS A 1 2 ? 3.818 8.518 9.274 1.00 10.98 ? 16 LYS A N 1
ATOM 5 C CA . LYS A 1 2 ? 3.482 7.815 10.494 1.00 7.68 ? 16 LYS A CA 1
ATOM 6 C C . LYS A 1 2 ? 2.214 6.993 10.270 1.00 9.98 ? 16 LYS A C 1
ATOM 7 O O . LYS A 1 2 ? 1.262 7.449 9.627 1.00 4.40 ? 16 LYS A O 1
ATOM 8 C CB . LYS A 1 2 ? 3.306 8.799 11.645 1.00 8.36 ? 16 LYS A CB 1
ATOM 9 C CG . LYS A 1 2 ? 2.974 8.132 12.972 1.00 15.83 ? 16 LYS A CG 1
ATOM 10 C CD . LYS A 1 2 ? 2.923 9.135 14.107 1.00 18.85 ? 16 LYS A CD 1
ATOM 11 C CE . LYS A 1 2 ? 4.156 9.013 14.996 1.00 23.08 ? 16 LYS A CE 1
ATOM 12 N NZ . LYS A 1 2 ? 4.215 10.062 16.065 1.00 19.14 ? 16 LYS A NZ 1
ATOM 13 N N . LEU A 1 3 ? 2.210 5.784 10.810 1.00 4.64 ? 17 LEU A N 1
ATOM 14 C CA . LEU A 1 3 ? 1.125 4.840 10.601 1.00 3.70 ? 17 LEU A CA 1
ATOM 15 C C . LEU A 1 3 ? 0.928 4.023 11.865 1.00 2.41 ? 17 LEU A C 1
ATOM 16 O O . LEU A 1 3 ? 1.887 3.518 12.426 1.00 3.40 ? 17 LEU A O 1
ATOM 17 C CB . LEU A 1 3 ? 1.467 3.956 9.409 1.00 13.62 ? 17 LEU A CB 1
ATOM 18 C CG . LEU A 1 3 ? 0.801 2.637 9.064 1.00 18.81 ? 17 LEU A CG 1
ATOM 19 C CD1 . LEU A 1 3 ? 1.113 2.389 7.594 1.00 8.01 ? 17 LEU A CD1 1
ATOM 20 C CD2 . LEU A 1 3 ? 1.313 1.486 9.945 1.00 13.89 ? 17 LEU A CD2 1
ATOM 21 N N . VAL A 1 4 ? -0.306 3.894 12.323 1.00 3.99 ? 18 VAL A N 1
ATOM 22 C CA . VAL A 1 4 ? -0.555 3.098 13.512 1.00 5.10 ? 18 VAL A CA 1
ATOM 23 C C . VAL A 1 4 ? -1.771 2.209 13.254 1.00 2.35 ? 18 VAL A C 1
ATOM 24 O O . VAL A 1 4 ? -2.804 2.663 12.742 1.00 3.62 ? 18 VAL A O 1
ATOM 25 C CB . VAL A 1 4 ? -0.735 3.991 14.774 1.00 5.06 ? 18 VAL A CB 1
ATOM 26 C CG1 . VAL A 1 4 ? -1.884 4.940 14.612 1.00 11.37 ? 18 VAL A CG1 1
ATOM 27 C CG2 . VAL A 1 4 ? -0.902 3.140 16.052 1.00 9.76 ? 18 VAL A CG2 1
ATOM 28 N N . PHE A 1 5 ? -1.616 0.929 13.566 1.00 3.11 ? 19 PHE A N 1
ATOM 29 C CA . PHE A 1 5 ? -2.674 -0.051 13.419 1.00 2.04 ? 19 PHE A CA 1
ATOM 30 C C . PHE A 1 5 ? -2.909 -0.741 14.764 1.00 3.21 ? 19 PHE A C 1
ATOM 31 O O . PHE A 1 5 ? -1.957 -1.175 15.414 1.00 5.37 ? 19 PHE A O 1
ATOM 32 C CB . PHE A 1 5 ? -2.323 -1.075 12.344 1.00 4.26 ? 19 PHE A CB 1
ATOM 33 C CG . PHE A 1 5 ? -3.351 -2.157 12.206 1.00 4.12 ? 19 PHE A CG 1
ATOM 34 C CD1 . PHE A 1 5 ? -3.259 -3.319 12.969 1.00 7.14 ? 19 PHE A CD1 1
ATOM 35 C CD2 . PHE A 1 5 ? -4.430 -2.004 11.342 1.00 6.16 ? 19 PHE A CD2 1
ATOM 36 C CE1 . PHE A 1 5 ? -4.216 -4.314 12.869 1.00 8.95 ? 19 PHE A CE1 1
ATOM 37 C CE2 . PHE A 1 5 ? -5.394 -3.003 11.224 1.00 6.91 ? 19 PHE A CE2 1
ATOM 38 C CZ . PHE A 1 5 ? -5.281 -4.157 11.996 1.00 5.99 ? 19 PHE A CZ 1
ATOM 39 N N . PHE A 1 6 ? -4.156 -0.864 15.180 1.00 3.82 ? 20 PHE A N 1
ATOM 40 C CA . PHE A 1 6 ? -4.435 -1.577 16.407 1.00 3.93 ? 20 PHE A CA 1
ATOM 41 C C . PHE A 1 6 ? -5.710 -2.384 16.223 1.00 3.18 ? 20 PHE A C 1
ATOM 42 O O . PHE A 1 6 ? -6.707 -1.874 15.717 1.00 3.96 ? 20 PHE A O 1
ATOM 43 C CB . PHE A 1 6 ? -4.561 -0.604 17.573 1.00 4.62 ? 20 PHE A CB 1
ATOM 44 C CG . PHE A 1 6 ? -4.986 -1.245 18.845 1.00 3.75 ? 20 PHE A CG 1
ATOM 45 C CD1 . PHE A 1 6 ? -4.078 -1.962 19.608 1.00 6.88 ? 20 PHE A CD1 1
ATOM 46 C CD2 . PHE A 1 6 ? -6.301 -1.155 19.265 1.00 5.42 ? 20 PHE A CD2 1
ATOM 47 C CE1 . PHE A 1 6 ? -4.484 -2.569 20.785 1.00 5.77 ? 20 PHE A CE1 1
ATOM 48 C CE2 . PHE A 1 6 ? -6.706 -1.757 20.445 1.00 7.54 ? 20 PHE A CE2 1
ATOM 49 C CZ . PHE A 1 6 ? -5.799 -2.468 21.200 1.00 7.04 ? 20 PHE A CZ 1
ATOM 50 N N . ALA A 1 7 ? -5.673 -3.645 16.616 1.00 3.03 ? 21 ALA A N 1
ATOM 51 C CA . ALA A 1 7 ? -6.851 -4.499 16.535 1.00 5.04 ? 21 ALA A CA 1
ATOM 52 C C . ALA A 1 7 ? -6.976 -5.381 17.763 1.00 5.88 ? 21 ALA A C 1
ATOM 53 O O . ALA A 1 7 ? -5.984 -5.841 18.314 1.00 10.26 ? 21 ALA A O 1
ATOM 54 C CB . ALA A 1 7 ? -6.801 -5.350 15.284 1.00 6.14 ? 21 ALA A CB 1
ATOM 55 N N . GLU A 1 8 ? -8.202 -5.614 18.193 1.00 7.16 ? 22 GLU A N 1
ATOM 56 C CA . GLU A 1 8 ? -8.425 -6.444 19.353 1.00 9.27 ? 22 GLU A CA 1
ATOM 57 C C . GLU A 1 8 ? -9.743 -7.134 19.144 1.00 9.80 ? 22 GLU A C 1
ATOM 58 O O . GLU A 1 8 ? -10.672 -6.549 18.589 1.00 12.80 ? 22 GLU A O 1
ATOM 59 C CB . GLU A 1 8 ? -8.429 -5.610 20.636 1.00 10.73 ? 22 GLU A CB 1
ATOM 60 C CG . GLU A 1 8 ? -8.751 -6.398 21.910 1.00 17.00 ? 22 GLU A CG 1
ATOM 61 C CD . GLU A 1 8 ? -7.632 -7.338 22.341 1.00 13.63 ? 22 GLU A CD 1
ATOM 62 O OE1 . GLU A 1 8 ? -7.464 -8.389 21.685 1.00 16.48 ? 22 GLU A OE1 1
ATOM 63 O OE2 . GLU A 1 8 ? -6.947 -7.036 23.347 1.00 15.38 ? 22 GLU A OE2 1
ATOM 64 N N . ASN A 1 9 ? -9.830 -8.378 19.582 1.00 8.03 ? 23 ASN A N 1
ATOM 65 C CA . ASN A 1 9 ? -11.072 -9.106 19.480 1.00 8.51 ? 23 ASN A CA 1
ATOM 66 C C . ASN A 1 9 ? -11.435 -9.690 20.839 1.00 10.49 ? 23 ASN A C 1
ATOM 67 O O . ASN A 1 9 ? -10.877 -10.700 21.276 1.00 10.82 ? 23 ASN A O 1
ATOM 68 C CB . ASN A 1 9 ? -10.971 -10.188 18.404 1.00 8.26 ? 23 ASN A CB 1
ATOM 69 C CG . ASN A 1 9 ? -12.312 -10.799 18.068 1.00 9.50 ? 23 ASN A CG 1
ATOM 70 O OD1 . ASN A 1 9 ? -13.338 -10.442 18.659 1.00 8.57 ? 23 ASN A OD1 1
ATOM 71 N ND2 . ASN A 1 9 ? -12.319 -11.721 17.111 1.00 11.88 ? 23 ASN A ND2 1
ATOM 72 N N . VAL A 1 10 ? -12.353 -9.012 21.516 1.00 6.46 ? 24 VAL A N 1
ATOM 73 C CA . VAL A 1 10 ? -12.905 -9.514 22.761 1.00 9.79 ? 24 VAL A CA 1
ATOM 74 C C . VAL A 1 10 ? -14.404 -9.754 22.586 1.00 13.61 ? 24 VAL A C 1
ATOM 75 O O . VAL A 1 10 ? -15.160 -9.772 23.551 1.00 12.59 ? 24 VAL A O 1
ATOM 76 C CB . VAL A 1 10 ? -12.647 -8.548 23.938 1.00 11.87 ? 24 VAL A CB 1
ATOM 77 C CG1 . VAL A 1 10 ? -11.162 -8.430 24.197 1.00 12.13 ? 24 VAL A CG1 1
ATOM 78 C CG2 . VAL A 1 10 ? -13.260 -7.178 23.663 1.00 10.33 ? 24 VAL A CG2 1
ATOM 79 N N . GLY A 1 11 ? -14.818 -9.965 21.341 1.00 14.54 ? 25 GLY A N 1
ATOM 80 C CA . GLY A 1 11 ? -16.227 -10.096 21.007 1.00 13.19 ? 25 GLY A CA 1
ATOM 81 C C . GLY A 1 11 ? -16.959 -11.242 21.685 1.00 16.88 ? 25 GLY A C 1
ATOM 82 O O . GLY A 1 11 ? -16.377 -12.290 21.970 1.00 19.28 ? 25 GLY A O 1
ATOM 83 N N . SER A 1 12 ? -18.244 -11.031 21.949 1.00 21.76 ? 26 SER A N 1
ATOM 84 C CA . SER A 1 12 ? -19.120 -12.074 22.479 1.00 17.91 ? 26 SER A CA 1
ATOM 85 C C . SER A 1 12 ? -19.878 -12.736 21.325 1.00 20.56 ? 26 SER A C 1
ATOM 86 O O . SER A 1 12 ? -19.661 -12.397 20.159 1.00 22.78 ? 26 SER A O 1
ATOM 87 C CB . SER A 1 12 ? -20.102 -11.498 23.511 1.00 15.69 ? 26 SER A CB 1
ATOM 88 O OG . SER A 1 12 ? -19.441 -11.045 24.682 1.00 17.87 ? 26 SER A OG 1
HETATM 89 N N . NH2 A 1 13 ? -20.730 -13.609 21.514 1.00 20.59 ? 27 NH2 A N 1
HETATM 90 C C . ACE B 1 1 ? -3.077 -6.483 20.050 1.00 7.82 ? 15 ACE B C 1
HETATM 91 O O . ACE B 1 1 ? -1.910 -6.502 20.451 1.00 10.20 ? 15 ACE B O 1
HETATM 92 C CH3 . ACE B 1 1 ? -4.241 -6.415 21.025 1.00 10.15 ? 15 ACE B CH3 1
ATOM 93 N N . LYS B 1 2 ? -3.412 -6.558 18.769 1.00 9.91 ? 16 LYS B N 1
ATOM 94 C CA . LYS B 1 2 ? -2.422 -6.562 17.696 1.00 6.86 ? 16 LYS B CA 1
ATOM 95 C C . LYS B 1 2 ? -2.057 -5.120 17.380 1.00 7.88 ? 16 LYS B C 1
ATOM 96 O O . LYS B 1 2 ? -2.925 -4.341 16.995 1.00 6.00 ? 16 LYS B O 1
ATOM 97 C CB . LYS B 1 2 ? -2.986 -7.278 16.459 1.00 12.22 ? 16 LYS B CB 1
ATOM 98 C CG . LYS B 1 2 ? -2.045 -7.400 15.268 1.00 13.79 ? 16 LYS B CG 1
ATOM 99 C CD . LYS B 1 2 ? -0.837 -8.286 15.590 1.00 18.79 ? 16 LYS B CD 1
ATOM 100 C CE . LYS B 1 2 ? 0.175 -8.329 14.445 1.00 16.91 ? 16 LYS B CE 1
ATOM 101 N NZ . LYS B 1 2 ? -0.393 -8.976 13.226 1.00 15.90 ? 16 LYS B NZ 1
ATOM 102 N N . LEU B 1 3 ? -0.796 -4.752 17.566 1.00 5.61 ? 17 LEU B N 1
ATOM 103 C CA . LEU B 1 3 ? -0.364 -3.367 17.386 1.00 8.36 ? 17 LEU B CA 1
ATOM 104 C C . LEU B 1 3 ? 0.750 -3.324 16.358 1.00 6.06 ? 17 LEU B C 1
ATOM 105 O O . LEU B 1 3 ? 1.711 -4.086 16.454 1.00 7.71 ? 17 LEU B O 1
ATOM 106 C CB . LEU B 1 3 ? 0.104 -2.771 18.722 1.00 8.31 ? 17 LEU B CB 1
ATOM 107 C CG . LEU B 1 3 ? 0.434 -1.278 18.886 1.00 9.54 ? 17 LEU B CG 1
ATOM 108 C CD1 . LEU B 1 3 ? 1.805 -0.909 18.357 1.00 10.25 ? 17 LEU B CD1 1
ATOM 109 C CD2 . LEU B 1 3 ? -0.630 -0.363 18.303 1.00 13.04 ? 17 LEU B CD2 1
ATOM 110 N N . VAL B 1 4 ? 0.624 -2.476 15.346 1.00 3.57 ? 18 VAL B N 1
ATOM 111 C CA . VAL B 1 4 ? 1.733 -2.274 14.413 1.00 5.97 ? 18 VAL B CA 1
ATOM 112 C C . VAL B 1 4 ? 1.945 -0.785 14.211 1.00 3.96 ? 18 VAL B C 1
ATOM 113 O O . VAL B 1 4 ? 1.007 -0.070 13.866 1.00 3.93 ? 18 VAL B O 1
ATOM 114 C CB . VAL B 1 4 ? 1.497 -2.935 13.047 1.00 3.69 ? 18 VAL B CB 1
ATOM 115 C CG1 . VAL B 1 4 ? 2.736 -2.759 12.155 1.00 7.07 ? 18 VAL B CG1 1
ATOM 116 C CG2 . VAL B 1 4 ? 1.146 -4.406 13.220 1.00 6.54 ? 18 VAL B CG2 1
ATOM 117 N N . PHE B 1 5 ? 3.178 -0.333 14.406 1.00 1.53 ? 19 PHE B N 1
ATOM 118 C CA . PHE B 1 5 ? 3.501 1.077 14.331 1.00 3.09 ? 19 PHE B CA 1
ATOM 119 C C . PHE B 1 5 ? 4.687 1.264 13.402 1.00 3.02 ? 19 PHE B C 1
ATOM 120 O O . PHE B 1 5 ? 5.638 0.500 13.460 1.00 3.28 ? 19 PHE B O 1
ATOM 121 C CB . PHE B 1 5 ? 3.818 1.652 15.714 1.00 3.59 ? 19 PHE B CB 1
ATOM 122 C CG . PHE B 1 5 ? 4.327 3.062 15.658 1.00 2.34 ? 19 PHE B CG 1
ATOM 123 C CD1 . PHE B 1 5 ? 3.461 4.102 15.382 1.00 5.98 ? 19 PHE B CD1 1
ATOM 124 C CD2 . PHE B 1 5 ? 5.678 3.341 15.818 1.00 2.66 ? 19 PHE B CD2 1
ATOM 125 C CE1 . PHE B 1 5 ? 3.918 5.409 15.295 1.00 11.66 ? 19 PHE B CE1 1
ATOM 126 C CE2 . PHE B 1 5 ? 6.143 4.653 15.730 1.00 14.30 ? 19 PHE B CE2 1
ATOM 127 C CZ . PHE B 1 5 ? 5.257 5.684 15.467 1.00 8.41 ? 19 PHE B CZ 1
ATOM 128 N N . PHE B 1 6 ? 4.623 2.279 12.552 1.00 1.47 ? 20 PHE B N 1
ATOM 129 C CA . PHE B 1 6 ? 5.746 2.586 11.693 1.00 2.33 ? 20 PHE B CA 1
ATOM 130 C C . PHE B 1 6 ? 5.857 4.077 11.506 1.00 3.15 ? 20 PHE B C 1
ATOM 131 O O . PHE B 1 6 ? 4.882 4.733 11.208 1.00 1.60 ? 20 PHE B O 1
ATOM 132 C CB . PHE B 1 6 ? 5.600 1.906 10.343 1.00 2.11 ? 20 PHE B CB 1
ATOM 133 C CG . PHE B 1 6 ? 6.722 2.196 9.409 1.00 4.50 ? 20 PHE B CG 1
ATOM 134 C CD1 . PHE B 1 6 ? 8.002 1.768 9.706 1.00 6.06 ? 20 PHE B CD1 1
ATOM 135 C CD2 . PHE B 1 6 ? 6.500 2.893 8.234 1.00 4.46 ? 20 PHE B CD2 1
ATOM 136 C CE1 . PHE B 1 6 ? 9.063 2.025 8.843 1.00 6.27 ? 20 PHE B CE1 1
ATOM 137 C CE2 . PHE B 1 6 ? 7.561 3.147 7.352 1.00 7.36 ? 20 PHE B CE2 1
ATOM 138 C CZ . PHE B 1 6 ? 8.845 2.724 7.673 1.00 7.66 ? 20 PHE B CZ 1
ATOM 139 N N . ALA B 1 7 ? 7.056 4.615 11.654 1.00 4.55 ? 21 ALA B N 1
ATOM 140 C CA . ALA B 1 7 ? 7.250 6.040 11.463 1.00 5.66 ? 21 ALA B CA 1
ATOM 141 C C . ALA B 1 7 ? 8.528 6.229 10.688 1.00 4.68 ? 21 ALA B C 1
ATOM 142 O O . ALA B 1 7 ? 9.483 5.477 10.872 1.00 4.01 ? 21 ALA B O 1
ATOM 143 C CB . ALA B 1 7 ? 7.302 6.761 12.776 1.00 7.91 ? 21 ALA B CB 1
ATOM 144 N N . GLU B 1 8 ? 8.533 7.213 9.809 1.00 7.09 ? 22 GLU B N 1
ATOM 145 C CA . GLU B 1 8 ? 9.704 7.441 8.992 1.00 6.88 ? 22 GLU B CA 1
ATOM 146 C C . GLU B 1 8 ? 9.841 8.895 8.632 1.00 6.38 ? 22 GLU B C 1
ATOM 147 O O . GLU B 1 8 ? 8.873 9.583 8.363 1.00 7.24 ? 22 GLU B O 1
ATOM 148 C CB . GLU B 1 8 ? 9.664 6.581 7.732 1.00 8.81 ? 22 GLU B CB 1
ATOM 149 C CG . GLU B 1 8 ? 8.634 6.969 6.691 1.00 13.32 ? 22 GLU B CG 1
ATOM 150 C CD . GLU B 1 8 ? 7.241 6.453 6.994 1.00 19.51 ? 22 GLU B CD 1
ATOM 151 O OE1 . GLU B 1 8 ? 7.006 5.976 8.127 1.00 15.63 ? 22 GLU B OE1 1
ATOM 152 O OE2 . GLU B 1 8 ? 6.376 6.492 6.086 1.00 18.69 ? 22 GLU B OE2 1
ATOM 153 N N . ASN B 1 9 ? 11.076 9.361 8.632 1.00 7.92 ? 23 ASN B N 1
ATOM 154 C CA . ASN B 1 9 ? 11.380 10.715 8.240 1.00 9.99 ? 23 ASN B CA 1
ATOM 155 C C . ASN B 1 9 ? 12.642 10.647 7.435 1.00 8.18 ? 23 ASN B C 1
ATOM 156 O O . ASN B 1 9 ? 13.746 10.714 7.981 1.00 10.65 ? 23 ASN B O 1
ATOM 157 C CB . ASN B 1 9 ? 11.552 11.621 9.455 1.00 12.81 ? 23 ASN B CB 1
ATOM 158 C CG . ASN B 1 9 ? 11.630 13.085 9.079 1.00 11.29 ? 23 ASN B CG 1
ATOM 159 O OD1 . ASN B 1 9 ? 11.844 13.426 7.920 1.00 17.38 ? 23 ASN B OD1 1
ATOM 160 N ND2 . ASN B 1 9 ? 11.452 13.963 10.066 1.00 18.43 ? 23 ASN B ND2 1
ATOM 161 N N . VAL B 1 10 ? 12.480 10.469 6.138 1.00 7.61 ? 24 VAL B N 1
ATOM 162 C CA . VAL B 1 10 ? 13.615 10.328 5.256 1.00 10.28 ? 24 VAL B CA 1
ATOM 163 C C . VAL B 1 10 ? 13.377 11.200 4.038 1.00 12.38 ? 24 VAL B C 1
ATOM 164 O O . VAL B 1 10 ? 12.333 11.123 3.383 1.00 13.94 ? 24 VAL B O 1
ATOM 165 C CB . VAL B 1 10 ? 13.857 8.851 4.867 1.00 13.95 ? 24 VAL B CB 1
ATOM 166 C CG1 . VAL B 1 10 ? 12.604 8.220 4.376 1.00 19.94 ? 24 VAL B CG1 1
ATOM 167 C CG2 . VAL B 1 10 ? 14.951 8.741 3.822 1.00 12.65 ? 24 VAL B CG2 1
ATOM 168 N N . GLY B 1 11 ? 14.340 12.073 3.767 1.00 14.05 ? 25 GLY B N 1
ATOM 169 C CA . GLY B 1 11 ? 14.241 12.969 2.632 1.00 16.06 ? 25 GLY B CA 1
ATOM 170 C C . GLY B 1 11 ? 14.195 12.183 1.342 1.00 12.15 ? 25 GLY B C 1
ATOM 171 O O . GLY B 1 11 ? 14.955 11.228 1.160 1.00 15.11 ? 25 GLY B O 1
ATOM 172 N N . SER B 1 12 ? 13.306 12.577 0.443 1.00 11.80 ? 26 SER B N 1
ATOM 173 C CA . SER B 1 12 ? 13.203 11.869 -0.815 1.00 10.53 ? 26 SER B CA 1
ATOM 174 C C . SER B 1 12 ? 12.994 12.828 -1.982 1.00 13.00 ? 26 SER B C 1
ATOM 175 O O . SER B 1 12 ? 12.520 13.948 -1.811 1.00 17.67 ? 26 SER B O 1
ATOM 176 C CB . SER B 1 12 ? 12.080 10.835 -0.740 1.00 10.99 ? 26 SER B CB 1
ATOM 177 O OG . SER B 1 12 ? 10.931 11.382 -0.124 1.00 14.76 ? 26 SER B OG 1
HETATM 178 N N . NH2 B 1 13 ? 13.315 12.503 -3.131 1.00 12.73 ? 27 NH2 B N 1
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