data_6NK4
#
_entry.id 6NK4
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6NK4 pdb_00006nk4 10.2210/pdb6nk4/pdb
WWPDB D_1000238875 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6NK4
_pdbx_database_status.recvd_initial_deposition_date 2019-01-04
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Eisenberg, D.S.' 1 ?
'Boyer, D.R.' 2 ?
'Sawaya, M.R.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_id_ASTM PNASA6
_citation.journal_id_CSD 0040
_citation.journal_id_ISSN 1091-6490
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 118
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title
;Intrinsic electronic conductivity of individual atomically resolved amyloid crystals reveals micrometer-long hole hopping via tyrosines.
;
_citation.year 2021
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1073/pnas.2014139118
_citation.pdbx_database_id_PubMed 33372136
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shipps, C.' 1 0000-0001-8397-1096
primary 'Kelly, H.R.' 2 ?
primary 'Dahl, P.J.' 3 ?
primary 'Yi, S.M.' 4 0000-0001-9219-9536
primary 'Vu, D.' 5 0000-0002-2623-963X
primary 'Boyer, D.' 6 0000-0002-4487-0230
primary 'Glynn, C.' 7 0000-0002-2197-2357
primary 'Sawaya, M.R.' 8 0000-0003-0874-9043
primary 'Eisenberg, D.' 9 0000-0003-2432-5419
primary 'Batista, V.S.' 10 0000-0002-3262-1237
primary 'Malvankar, N.S.' 11 0000-0001-5611-6633
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 6NK4
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 62.906
_cell.length_a_esd ?
_cell.length_b 62.906
_cell.length_b_esd ?
_cell.length_c 4.832
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6NK4
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 169
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 61'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Microtubule-associated protein tau' 1086.390 1 ? ? 'repeat 2 peptide (UNP residues 591-599)' ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code KVQIINKKL
_entity_poly.pdbx_seq_one_letter_code_can KVQIINKKL
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 LYS n
1 2 VAL n
1 3 GLN n
1 4 ILE n
1 5 ILE n
1 6 ASN n
1 7 LYS n
1 8 LYS n
1 9 LEU n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 9
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code TAU_HUMAN
_struct_ref.pdbx_db_accession P10636
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code KVQIINKKL
_struct_ref.pdbx_align_begin 591
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 6NK4
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 9
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P10636
_struct_ref_seq.db_align_beg 591
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 599
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 9
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6NK4
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.54
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 51.58
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '0.2 M lithium citrate, 20% PEG3350'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 88
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment N
#
_diffrn_detector.details ?
_diffrn_detector.detector CMOS
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'TVIPS F416 CMOS CAMERA'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2017-01-19
_diffrn_detector.pdbx_frequency ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type electron
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.0251
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source 'ELECTRON MICROSCOPE'
_diffrn_source.target ?
_diffrn_source.type 'TECNAI F20 TEM'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.0251
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_synchrotron_site ?
#
_reflns.B_iso_Wilson_estimate 22.140
_reflns.entry_id 6NK4
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.994
_reflns.d_resolution_low 90.000
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 943
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 97.100
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 6.000
_reflns.pdbx_Rmerge_I_obs 0.244
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 2.700
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 1.394
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
2.000 2.150 ? ? ? ? ? ? 174 96.700 ? ? ? ? 0.681 ? ? ? ? ? ? ? ? 4.900 ? 1.038 ? ? ? ? ? 1 1 ? ?
2.150 2.370 ? ? ? ? ? ? 196 96.100 ? ? ? ? 0.640 ? ? ? ? ? ? ? ? 7.300 ? 1.162 ? ? ? ? ? 2 1 ? ?
2.370 2.710 ? ? ? ? ? ? 166 98.800 ? ? ? ? 0.366 ? ? ? ? ? ? ? ? 6.400 ? 1.193 ? ? ? ? ? 3 1 ? ?
2.710 3.420 ? ? ? ? ? ? 185 99.500 ? ? ? ? 0.327 ? ? ? ? ? ? ? ? 5.500 ? 1.362 ? ? ? ? ? 4 1 ? ?
3.420 27.24 ? ? ? ? ? ? 222 95.300 ? ? ? ? 0.144 ? ? ? ? ? ? ? ? 5.600 ? 2.110 ? ? ? ? ? 5 1 ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 51.320
_refine.B_iso_mean 18.6573
_refine.B_iso_min 3.330
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6NK4
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.9940
_refine.ls_d_res_low 27.24
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 934
_refine.ls_number_reflns_R_free 84
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 96.3900
_refine.ls_percent_reflns_R_free 8.9900
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2638
_refine.ls_R_factor_R_free 0.2991
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2601
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.360
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'PDB entry 5V5B'
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 19.1000
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.2800
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.d_res_high 1.9940
_refine_hist.d_res_low 54.4780
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 79
_refine_hist.pdbx_number_residues_total 9
_refine_hist.pdbx_B_iso_mean_solvent 17.98
_refine_hist.pdbx_number_atoms_protein 76
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON CRYSTALLOGRAPHY' ? 0.010 ? 75 ? f_bond_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 1.399 ? 98 ? f_angle_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.114 ? 13 ? f_chiral_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.005 ? 11 ? f_plane_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 17.503 ? 33 ? f_dihedral_angle_d ? ?
#
_refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_ls_shell.d_res_high 1.9944
_refine_ls_shell.d_res_low 27.24
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 84
_refine_ls_shell.number_reflns_R_work 850
_refine_ls_shell.percent_reflns_obs 96.0000
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.2991
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.2601
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 6NK4
_struct.title 'KVQIINKKL, crystal structure of a tau protein fragment'
_struct.pdbx_model_details
'Crystal structure KVQIINKL from the microtubule binding region of tau protein reveals a tightly packed steric zipper'
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6NK4
_struct_keywords.text
;Amyloid, tau, Alzheimer's Disease, tauopathy, MAPT, STRUCTURAL PROTEIN
;
_struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_atom_sites.entry_id 6NK4
_atom_sites.fract_transf_matrix[1][1] 0.015897
_atom_sites.fract_transf_matrix[1][2] 0.009178
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.018356
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.206954
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . LYS A 1 1 ? 21.145 -36.884 0.577 1.00 18.51 ? 1 LYS A N 1
ATOM 2 C CA . LYS A 1 1 ? 21.123 -35.509 1.150 1.00 14.56 ? 1 LYS A CA 1
ATOM 3 C C . LYS A 1 1 ? 19.924 -34.729 0.614 1.00 12.99 ? 1 LYS A C 1
ATOM 4 O O . LYS A 1 1 ? 19.694 -34.728 -0.581 1.00 9.41 ? 1 LYS A O 1
ATOM 5 C CB . LYS A 1 1 ? 22.406 -34.777 0.761 1.00 18.89 ? 1 LYS A CB 1
ATOM 6 C CG . LYS A 1 1 ? 22.700 -33.546 1.586 1.00 25.41 ? 1 LYS A CG 1
ATOM 7 C CD . LYS A 1 1 ? 23.549 -32.536 0.828 1.00 22.34 ? 1 LYS A CD 1
ATOM 8 C CE . LYS A 1 1 ? 24.847 -33.125 0.318 1.00 26.47 ? 1 LYS A CE 1
ATOM 9 N NZ . LYS A 1 1 ? 25.738 -32.034 -0.174 1.00 28.18 ? 1 LYS A NZ 1
ATOM 10 N N . VAL A 1 2 ? 19.149 -34.099 1.497 1.00 8.51 ? 2 VAL A N 1
ATOM 11 C CA . VAL A 1 2 ? 18.199 -33.054 1.075 1.00 11.73 ? 2 VAL A CA 1
ATOM 12 C C . VAL A 1 2 ? 18.736 -31.770 1.709 1.00 6.52 ? 2 VAL A C 1
ATOM 13 O O . VAL A 1 2 ? 18.886 -31.691 2.930 1.00 11.18 ? 2 VAL A O 1
ATOM 14 C CB . VAL A 1 2 ? 16.733 -33.310 1.509 1.00 8.47 ? 2 VAL A CB 1
ATOM 15 C CG1 . VAL A 1 2 ? 15.806 -32.270 0.893 1.00 5.03 ? 2 VAL A CG1 1
ATOM 16 C CG2 . VAL A 1 2 ? 16.276 -34.705 1.114 1.00 10.70 ? 2 VAL A CG2 1
ATOM 17 N N . GLN A 1 3 ? 19.053 -30.784 0.886 1.00 8.45 ? 3 GLN A N 1
ATOM 18 C CA . GLN A 1 3 ? 19.726 -29.602 1.393 1.00 9.49 ? 3 GLN A CA 1
ATOM 19 C C . GLN A 1 3 ? 19.412 -28.344 0.635 1.00 5.09 ? 3 GLN A C 1
ATOM 20 O O . GLN A 1 3 ? 19.318 -28.343 -0.587 1.00 4.45 ? 3 GLN A O 1
ATOM 21 C CB . GLN A 1 3 ? 21.251 -29.849 1.366 1.00 11.82 ? 3 GLN A CB 1
ATOM 22 C CG . GLN A 1 3 ? 22.098 -28.718 1.948 1.00 12.48 ? 3 GLN A CG 1
ATOM 23 C CD . GLN A 1 3 ? 23.574 -29.018 1.805 1.00 20.08 ? 3 GLN A CD 1
ATOM 24 O OE1 . GLN A 1 3 ? 24.060 -29.273 0.695 1.00 15.36 ? 3 GLN A OE1 1
ATOM 25 N NE2 . GLN A 1 3 ? 24.285 -29.043 2.919 1.00 14.80 ? 3 GLN A NE2 1
ATOM 26 N N . ILE A 1 4 ? 19.296 -27.257 1.390 1.00 5.85 ? 4 ILE A N 1
ATOM 27 C CA . ILE A 1 4 ? 19.186 -25.923 0.828 1.00 6.50 ? 4 ILE A CA 1
ATOM 28 C C . ILE A 1 4 ? 20.307 -25.128 1.419 1.00 7.06 ? 4 ILE A C 1
ATOM 29 O O . ILE A 1 4 ? 20.463 -25.091 2.653 1.00 7.62 ? 4 ILE A O 1
ATOM 30 C CB . ILE A 1 4 ? 17.858 -25.236 1.219 1.00 7.43 ? 4 ILE A CB 1
ATOM 31 C CG1 . ILE A 1 4 ? 16.663 -26.039 0.683 1.00 5.15 ? 4 ILE A CG1 1
ATOM 32 C CG2 . ILE A 1 4 ? 17.844 -23.803 0.710 1.00 6.47 ? 4 ILE A CG2 1
ATOM 33 C CD1 . ILE A 1 4 ? 15.310 -25.511 1.157 1.00 3.33 ? 4 ILE A CD1 1
ATOM 34 N N . ILE A 1 5 ? 21.092 -24.520 0.547 1.00 8.84 ? 5 ILE A N 1
ATOM 35 C CA . ILE A 1 5 ? 22.070 -23.517 0.932 1.00 10.13 ? 5 ILE A CA 1
ATOM 36 C C . ILE A 1 5 ? 21.541 -22.234 0.357 1.00 8.03 ? 5 ILE A C 1
ATOM 37 O O . ILE A 1 5 ? 21.499 -22.049 -0.865 1.00 11.12 ? 5 ILE A O 1
ATOM 38 C CB . ILE A 1 5 ? 23.436 -23.817 0.337 1.00 10.53 ? 5 ILE A CB 1
ATOM 39 C CG1 . ILE A 1 5 ? 23.923 -25.168 0.835 1.00 15.06 ? 5 ILE A CG1 1
ATOM 40 C CG2 . ILE A 1 5 ? 24.428 -22.730 0.722 1.00 16.39 ? 5 ILE A CG2 1
ATOM 41 C CD1 . ILE A 1 5 ? 24.925 -25.794 -0.095 1.00 17.23 ? 5 ILE A CD1 1
ATOM 42 N N . ASN A 1 6 ? 21.115 -21.357 1.241 1.00 10.11 ? 6 ASN A N 1
ATOM 43 C CA . ASN A 1 6 ? 20.502 -20.104 0.841 1.00 12.76 ? 6 ASN A CA 1
ATOM 44 C C . ASN A 1 6 ? 21.312 -18.975 1.454 1.00 9.09 ? 6 ASN A C 1
ATOM 45 O O . ASN A 1 6 ? 21.573 -18.960 2.658 1.00 11.48 ? 6 ASN A O 1
ATOM 46 C CB . ASN A 1 6 ? 19.084 -20.060 1.331 1.00 6.77 ? 6 ASN A CB 1
ATOM 47 C CG . ASN A 1 6 ? 18.278 -18.961 0.716 1.00 7.76 ? 6 ASN A CG 1
ATOM 48 O OD1 . ASN A 1 6 ? 18.246 -18.799 -0.492 1.00 9.94 ? 6 ASN A OD1 1
ATOM 49 N ND2 . ASN A 1 6 ? 17.570 -18.216 1.554 1.00 8.14 ? 6 ASN A ND2 1
ATOM 50 N N . LYS A 1 7 ? 21.705 -18.041 0.619 1.00 11.12 ? 7 LYS A N 1
ATOM 51 C CA . LYS A 1 7 ? 22.493 -16.928 1.093 1.00 12.69 ? 7 LYS A CA 1
ATOM 52 C C . LYS A 1 7 ? 21.949 -15.681 0.449 1.00 11.09 ? 7 LYS A C 1
ATOM 53 O O . LYS A 1 7 ? 21.919 -15.559 -0.780 1.00 12.72 ? 7 LYS A O 1
ATOM 54 C CB . LYS A 1 7 ? 23.972 -17.143 0.780 1.00 17.87 ? 7 LYS A CB 1
ATOM 55 C CG . LYS A 1 7 ? 24.863 -16.146 1.511 1.00 30.37 ? 7 LYS A CG 1
ATOM 56 C CD . LYS A 1 7 ? 26.323 -16.558 1.581 1.00 41.21 ? 7 LYS A CD 1
ATOM 57 C CE . LYS A 1 7 ? 27.100 -15.594 2.476 1.00 47.29 ? 7 LYS A CE 1
ATOM 58 N NZ . LYS A 1 7 ? 28.528 -15.977 2.655 1.00 37.03 ? 7 LYS A NZ 1
ATOM 59 N N . LYS A 1 8 ? 21.464 -14.781 1.286 1.00 16.96 ? 8 LYS A N 1
ATOM 60 C CA . LYS A 1 8 ? 21.000 -13.491 0.826 1.00 21.37 ? 8 LYS A CA 1
ATOM 61 C C . LYS A 1 8 ? 21.936 -12.415 1.363 1.00 24.04 ? 8 LYS A C 1
ATOM 62 O O . LYS A 1 8 ? 22.262 -12.395 2.548 1.00 26.40 ? 8 LYS A O 1
ATOM 63 C CB . LYS A 1 8 ? 19.553 -13.243 1.245 1.00 21.45 ? 8 LYS A CB 1
ATOM 64 C CG . LYS A 1 8 ? 19.002 -11.955 0.648 1.00 37.01 ? 8 LYS A CG 1
ATOM 65 C CD . LYS A 1 8 ? 17.546 -11.686 0.987 1.00 44.74 ? 8 LYS A CD 1
ATOM 66 C CE . LYS A 1 8 ? 17.110 -10.359 0.387 1.00 36.45 ? 8 LYS A CE 1
ATOM 67 N NZ . LYS A 1 8 ? 15.692 -10.050 0.716 1.00 51.32 ? 8 LYS A NZ 1
ATOM 68 N N . LEU A 1 9 ? 22.374 -11.539 0.462 1.00 29.22 ? 9 LEU A N 1
ATOM 69 C CA . LEU A 1 9 ? 23.276 -10.432 0.778 1.00 39.96 ? 9 LEU A CA 1
ATOM 70 C C . LEU A 1 9 ? 22.668 -9.126 0.270 1.00 47.35 ? 9 LEU A C 1
ATOM 71 O O . LEU A 1 9 ? 22.264 -9.047 -0.894 1.00 41.42 ? 9 LEU A O 1
ATOM 72 C CB . LEU A 1 9 ? 24.631 -10.667 0.111 1.00 41.51 ? 9 LEU A CB 1
ATOM 73 C CG . LEU A 1 9 ? 25.501 -11.762 0.747 1.00 39.09 ? 9 LEU A CG 1
ATOM 74 C CD1 . LEU A 1 9 ? 26.149 -12.685 -0.276 1.00 39.35 ? 9 LEU A CD1 1
ATOM 75 C CD2 . LEU A 1 9 ? 26.578 -11.154 1.622 1.00 37.09 ? 9 LEU A CD2 1
ATOM 76 O OXT . LEU A 1 9 ? 22.566 -8.127 0.994 1.00 40.15 ? 9 LEU A OXT 1
HETATM 77 O O . HOH B 2 . ? 19.030 -15.879 -0.990 1.00 18.90 ? 101 HOH A O 1
HETATM 78 O O . HOH B 2 . ? 24.217 -20.011 3.547 1.00 17.03 ? 102 HOH A O 1
HETATM 79 O O . HOH B 2 . ? 14.656 -16.486 1.314 1.00 18.02 ? 103 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 LYS 1 1 1 LYS LYS A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 GLN 3 3 3 GLN GLN A . n
A 1 4 ILE 4 4 4 ILE ILE A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ASN 6 6 6 ASN ASN A . n
A 1 7 LYS 7 7 7 LYS LYS A . n
A 1 8 LYS 8 8 8 LYS LYS A . n
A 1 9 LEU 9 9 9 LEU LEU A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 2 HOH HOH A .
B 2 HOH 2 102 3 HOH HOH A .
B 2 HOH 3 103 1 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details decameric
_pdbx_struct_assembly.oligomeric_count 10
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B
1 2 A,B
1 3 A,B
1 4 A,B
1 5 A,B
1 6 A,B
1 7 A,B
1 8 A,B
1 9 A,B
1 10 A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4.8320000000
3 'crystal symmetry operation' 1_557 x,y,z+2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 9.6640000000
4 'crystal symmetry operation' 1_558 x,y,z+3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14.4960000000
5 'crystal symmetry operation' 1_559 x,y,z+4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 19.3280000000
6 'crystal symmetry operation' 4_545 -x,-y-1,z+1/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000
-1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 2.4160000000
7 'crystal symmetry operation' 4_546 -x,-y-1,z+3/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000
-1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 7.2480000000
8 'crystal symmetry operation' 4_547 -x,-y-1,z+5/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000
-1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 12.0800000000
9 'crystal symmetry operation' 4_548 -x,-y-1,z+7/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000
-1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 16.9120000000
10 'crystal symmetry operation' 4_549 -x,-y-1,z+9/2 -1.0000000000 0.0000000000 0.0000000000 31.4530000000 0.0000000000
-1.0000000000 0.0000000000 -54.4781940505 0.0000000000 0.0000000000 1.0000000000 21.7440000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2020-01-15
2 'Structure model' 1 1 2021-01-27
3 'Structure model' 1 2 2021-06-30
4 'Structure model' 1 3 2023-10-11
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' diffrn_detector
4 4 'Structure model' chem_comp_atom
5 4 'Structure model' chem_comp_bond
6 4 'Structure model' database_2
7 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_ASTM'
4 2 'Structure model' '_citation.journal_id_CSD'
5 2 'Structure model' '_citation.journal_id_ISSN'
6 2 'Structure model' '_citation.journal_volume'
7 2 'Structure model' '_citation.pdbx_database_id_DOI'
8 2 'Structure model' '_citation.pdbx_database_id_PubMed'
9 2 'Structure model' '_citation.title'
10 2 'Structure model' '_citation.year'
11 3 'Structure model' '_diffrn_detector.detector'
12 4 'Structure model' '_database_2.pdbx_DOI'
13 4 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 2
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5
#
_em_3d_fitting.id 1
_em_3d_fitting.entry_id 6NK4
_em_3d_fitting.ref_space ?
_em_3d_fitting.ref_protocol ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.method ?
_em_3d_fitting.details ?
#
_em_3d_reconstruction.entry_id 6NK4
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution ?
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
_em_3d_reconstruction.citation_id ?
_em_3d_reconstruction.euler_angles_details ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'KVQIINKKL Tau peptide'
_em_entity_assembly.source NATURAL
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 6NK4
_em_imaging.accelerating_voltage 200
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen ?
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TECNAI 20'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_sample_support.citation_id ?
_em_sample_support.details unspecified
_em_sample_support.film_material ?
_em_sample_support.grid_material ?
_em_sample_support.grid_mesh_size ?
_em_sample_support.grid_type ?
_em_sample_support.id 1
_em_sample_support.method ?
_em_sample_support.specimen_id 1
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature ?
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.entry_id 6NK4
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 6NK4
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
GLN N N N N 18
GLN CA C N S 19
GLN C C N N 20
GLN O O N N 21
GLN CB C N N 22
GLN CG C N N 23
GLN CD C N N 24
GLN OE1 O N N 25
GLN NE2 N N N 26
GLN OXT O N N 27
GLN H H N N 28
GLN H2 H N N 29
GLN HA H N N 30
GLN HB2 H N N 31
GLN HB3 H N N 32
GLN HG2 H N N 33
GLN HG3 H N N 34
GLN HE21 H N N 35
GLN HE22 H N N 36
GLN HXT H N N 37
HOH O O N N 38
HOH H1 H N N 39
HOH H2 H N N 40
ILE N N N N 41
ILE CA C N S 42
ILE C C N N 43
ILE O O N N 44
ILE CB C N S 45
ILE CG1 C N N 46
ILE CG2 C N N 47
ILE CD1 C N N 48
ILE OXT O N N 49
ILE H H N N 50
ILE H2 H N N 51
ILE HA H N N 52
ILE HB H N N 53
ILE HG12 H N N 54
ILE HG13 H N N 55
ILE HG21 H N N 56
ILE HG22 H N N 57
ILE HG23 H N N 58
ILE HD11 H N N 59
ILE HD12 H N N 60
ILE HD13 H N N 61
ILE HXT H N N 62
LEU N N N N 63
LEU CA C N S 64
LEU C C N N 65
LEU O O N N 66
LEU CB C N N 67
LEU CG C N N 68
LEU CD1 C N N 69
LEU CD2 C N N 70
LEU OXT O N N 71
LEU H H N N 72
LEU H2 H N N 73
LEU HA H N N 74
LEU HB2 H N N 75
LEU HB3 H N N 76
LEU HG H N N 77
LEU HD11 H N N 78
LEU HD12 H N N 79
LEU HD13 H N N 80
LEU HD21 H N N 81
LEU HD22 H N N 82
LEU HD23 H N N 83
LEU HXT H N N 84
LYS N N N N 85
LYS CA C N S 86
LYS C C N N 87
LYS O O N N 88
LYS CB C N N 89
LYS CG C N N 90
LYS CD C N N 91
LYS CE C N N 92
LYS NZ N N N 93
LYS OXT O N N 94
LYS H H N N 95
LYS H2 H N N 96
LYS HA H N N 97
LYS HB2 H N N 98
LYS HB3 H N N 99
LYS HG2 H N N 100
LYS HG3 H N N 101
LYS HD2 H N N 102
LYS HD3 H N N 103
LYS HE2 H N N 104
LYS HE3 H N N 105
LYS HZ1 H N N 106
LYS HZ2 H N N 107
LYS HZ3 H N N 108
LYS HXT H N N 109
VAL N N N N 110
VAL CA C N S 111
VAL C C N N 112
VAL O O N N 113
VAL CB C N N 114
VAL CG1 C N N 115
VAL CG2 C N N 116
VAL OXT O N N 117
VAL H H N N 118
VAL H2 H N N 119
VAL HA H N N 120
VAL HB H N N 121
VAL HG11 H N N 122
VAL HG12 H N N 123
VAL HG13 H N N 124
VAL HG21 H N N 125
VAL HG22 H N N 126
VAL HG23 H N N 127
VAL HXT H N N 128
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
GLN N CA sing N N 17
GLN N H sing N N 18
GLN N H2 sing N N 19
GLN CA C sing N N 20
GLN CA CB sing N N 21
GLN CA HA sing N N 22
GLN C O doub N N 23
GLN C OXT sing N N 24
GLN CB CG sing N N 25
GLN CB HB2 sing N N 26
GLN CB HB3 sing N N 27
GLN CG CD sing N N 28
GLN CG HG2 sing N N 29
GLN CG HG3 sing N N 30
GLN CD OE1 doub N N 31
GLN CD NE2 sing N N 32
GLN NE2 HE21 sing N N 33
GLN NE2 HE22 sing N N 34
GLN OXT HXT sing N N 35
HOH O H1 sing N N 36
HOH O H2 sing N N 37
ILE N CA sing N N 38
ILE N H sing N N 39
ILE N H2 sing N N 40
ILE CA C sing N N 41
ILE CA CB sing N N 42
ILE CA HA sing N N 43
ILE C O doub N N 44
ILE C OXT sing N N 45
ILE CB CG1 sing N N 46
ILE CB CG2 sing N N 47
ILE CB HB sing N N 48
ILE CG1 CD1 sing N N 49
ILE CG1 HG12 sing N N 50
ILE CG1 HG13 sing N N 51
ILE CG2 HG21 sing N N 52
ILE CG2 HG22 sing N N 53
ILE CG2 HG23 sing N N 54
ILE CD1 HD11 sing N N 55
ILE CD1 HD12 sing N N 56
ILE CD1 HD13 sing N N 57
ILE OXT HXT sing N N 58
LEU N CA sing N N 59
LEU N H sing N N 60
LEU N H2 sing N N 61
LEU CA C sing N N 62
LEU CA CB sing N N 63
LEU CA HA sing N N 64
LEU C O doub N N 65
LEU C OXT sing N N 66
LEU CB CG sing N N 67
LEU CB HB2 sing N N 68
LEU CB HB3 sing N N 69
LEU CG CD1 sing N N 70
LEU CG CD2 sing N N 71
LEU CG HG sing N N 72
LEU CD1 HD11 sing N N 73
LEU CD1 HD12 sing N N 74
LEU CD1 HD13 sing N N 75
LEU CD2 HD21 sing N N 76
LEU CD2 HD22 sing N N 77
LEU CD2 HD23 sing N N 78
LEU OXT HXT sing N N 79
LYS N CA sing N N 80
LYS N H sing N N 81
LYS N H2 sing N N 82
LYS CA C sing N N 83
LYS CA CB sing N N 84
LYS CA HA sing N N 85
LYS C O doub N N 86
LYS C OXT sing N N 87
LYS CB CG sing N N 88
LYS CB HB2 sing N N 89
LYS CB HB3 sing N N 90
LYS CG CD sing N N 91
LYS CG HG2 sing N N 92
LYS CG HG3 sing N N 93
LYS CD CE sing N N 94
LYS CD HD2 sing N N 95
LYS CD HD3 sing N N 96
LYS CE NZ sing N N 97
LYS CE HE2 sing N N 98
LYS CE HE3 sing N N 99
LYS NZ HZ1 sing N N 100
LYS NZ HZ2 sing N N 101
LYS NZ HZ3 sing N N 102
LYS OXT HXT sing N N 103
VAL N CA sing N N 104
VAL N H sing N N 105
VAL N H2 sing N N 106
VAL CA C sing N N 107
VAL CA CB sing N N 108
VAL CA HA sing N N 109
VAL C O doub N N 110
VAL C OXT sing N N 111
VAL CB CG1 sing N N 112
VAL CB CG2 sing N N 113
VAL CB HB sing N N 114
VAL CG1 HG11 sing N N 115
VAL CG1 HG12 sing N N 116
VAL CG1 HG13 sing N N 117
VAL CG2 HG21 sing N N 118
VAL CG2 HG22 sing N N 119
VAL CG2 HG23 sing N N 120
VAL OXT HXT sing N N 121
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90
_em_3d_crystal_entity.angle_beta 90
_em_3d_crystal_entity.angle_gamma 90
_em_3d_crystal_entity.length_a 62.906
_em_3d_crystal_entity.length_b 62.906
_em_3d_crystal_entity.length_c 4.832
_em_3d_crystal_entity.space_group_name 'P 61'
_em_3d_crystal_entity.space_group_num 169
#
_em_crystal_formation.id 1
_em_crystal_formation.specimen_id 1
_em_crystal_formation.atmosphere air
_em_crystal_formation.details '0.2 M lithium citrate, 20% PEG3350'
_em_crystal_formation.instrument 'hanging drop vapor diffusion'
_em_crystal_formation.lipid_mixture none
_em_crystal_formation.lipid_protein_ratio ?
_em_crystal_formation.temperature 291
_em_crystal_formation.time ?
_em_crystal_formation.time_unit ?
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 1850
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
_em_diffraction_shell.id 1
_em_diffraction_shell.em_diffraction_stats_id 1
_em_diffraction_shell.fourier_space_coverage 95.7
_em_diffraction_shell.high_resolution 2.00
_em_diffraction_shell.low_resolution 2.15
_em_diffraction_shell.multiplicity 4.9
_em_diffraction_shell.num_structure_factors 174
_em_diffraction_shell.phase_residual 0.1
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details ?
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 97.1
_em_diffraction_stats.high_resolution 2.0
_em_diffraction_stats.num_intensities_measured 943
_em_diffraction_stats.num_structure_factors 943
_em_diffraction_stats.overall_phase_error 0
_em_diffraction_stats.overall_phase_residual 0.1
_em_diffraction_stats.phase_error_rejection_criteria 0
_em_diffraction_stats.r_merge 0.244
_em_diffraction_stats.r_sym 0.244
#
_em_entity_assembly_molwt.entity_assembly_id 1
_em_entity_assembly_molwt.id 1
_em_entity_assembly_molwt.experimental_flag NO
_em_entity_assembly_molwt.units ?
_em_entity_assembly_molwt.value ?
#
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.id 1
_em_entity_assembly_naturalsource.ncbi_tax_id 9606
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism 'Homo sapiens'
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
_em_entity_assembly_naturalsource.cell ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.1
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? ? ? ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ?
9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ?
11 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? ?
12 RECONSTRUCTION ? ? ? 1 ? ?
13 'MODEL REFINEMENT' ? PHENIX 1.11.1_2575 ? 1 ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration ?
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
_pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number AG0543022
_pdbx_audit_support.ordinal 1
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 5V5B
_pdbx_initial_refinement_model.details 'PDB entry 5V5B'
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#