data_6M9J
#
_entry.id 6M9J
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6M9J pdb_00006m9j 10.2210/pdb6m9j/pdb
WWPDB D_1000236321 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2019-03-27
2 'Structure model' 1 1 2019-12-04
3 'Structure model' 1 2 2024-03-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Author supporting evidence'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' pdbx_audit_support
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' database_2
5 3 'Structure model' diffrn_radiation_wavelength
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_pdbx_audit_support.funding_organization'
2 3 'Structure model' '_database_2.pdbx_DOI'
3 3 'Structure model' '_database_2.pdbx_database_accession'
4 3 'Structure model' '_diffrn_radiation_wavelength.wavelength'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6M9J
_pdbx_database_status.recvd_initial_deposition_date 2018-08-23
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.details .
_pdbx_database_related.db_id 6M7M
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Zee, C.' 1 ?
'Glynn, C.' 2 ?
'Gallagher-Jones, M.' 3 ?
'Miao, J.' 4 ?
'Santiago, C.G.' 5 ?
'Cascio, D.' 6 ?
'Gonen, T.' 7 ?
'Sawaya, M.R.' 8 ?
'Rodriguez, J.A.' 9 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev IUCrJ
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 2052-2525
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 6
_citation.language ?
_citation.page_first 197
_citation.page_last 205
_citation.title
'Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ.'
_citation.year 2019
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1107/S2052252518017621
_citation.pdbx_database_id_PubMed 30867917
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Zee, C.T.' 1 ?
primary 'Glynn, C.' 2 0000-0002-2197-2357
primary 'Gallagher-Jones, M.' 3 0000-0003-4227-917X
primary 'Miao, J.' 4 0000-0001-5527-295X
primary 'Santiago, C.G.' 5 0000-0001-9675-5931
primary 'Cascio, D.' 6 ?
primary 'Gonen, T.' 7 0000-0003-3326-1242
primary 'Sawaya, M.R.' 8 0000-0003-0874-9043
primary 'Rodriguez, J.A.' 9 0000-0002-0248-4964
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Ice nucleation protein' 522.508 1 ? ? 'UNP residues 707-712' DL-GSTSTA
2 water nat water 18.015 3 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name inaZ
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GSTSTA
_entity_poly.pdbx_seq_one_letter_code_can GSTSTA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 SER n
1 3 THR n
1 4 SER n
1 5 THR n
1 6 ALA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Pseudomonas syringae pv. syringae'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 321
_pdbx_entity_src_syn.details DL-GSTSTA
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 707 707 GLY GLY A . n
A 1 2 SER 2 708 708 SER SER A . n
A 1 3 THR 3 709 709 THR THR A . n
A 1 4 SER 4 710 710 SER SER A . n
A 1 5 THR 5 711 711 THR THR A . n
A 1 6 ALA 6 712 712 ALA ALA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 801 3 HOH HOH A .
B 2 HOH 2 802 2 HOH HOH A .
B 2 HOH 3 803 1 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1
? refinement ? ? 'Paul D. Adams' PDAdams@lbl.gov ? ? ? ? C++ http://www.phenix-online.org/ ? PHENIX
? ? package 1.12_2829 2
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? .
4
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? .
5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 104.480
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 6M9J
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 14.030
_cell.length_a_esd ?
_cell.length_b 9.220
_cell.length_b_esd ?
_cell.length_c 20.770
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6M9J
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 14
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1 21/c 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6M9J
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
_diffrn.pdbx_serial_crystal_experiment ?
#
_diffrn_detector.area_resol_mean ?
_diffrn_detector.details ?
_diffrn_detector.detector ?
_diffrn_detector.diffrn_id 1
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_collection_date 2017-11-27
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_frequency ?
_diffrn_detector.type ?
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type electron
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_reflns.B_iso_Wilson_estimate 46.140
_reflns.entry_id 6M9J
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 0.900
_reflns.d_resolution_low 7.629
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 2906
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 77.600
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 3.401
_reflns.pdbx_Rmerge_I_obs 0.128
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 5.460
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.833
_reflns.pdbx_scaling_rejects 27
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.151
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 9884
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.991
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
0.900 0.920 ? 2.520 ? 728 288 ? 230 79.900 ? ? ? ? 0.332 ? ? ? ? ? ? ? ? 3.165 ? ? ? ? 0.387 ? ? 1 1 0.962 ?
0.920 0.950 ? 2.560 ? 652 260 ? 196 75.400 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 3.327 ? ? ? ? 0.466 ? ? 2 1 0.819 ?
0.950 0.980 ? 3.080 ? 734 259 ? 204 78.800 ? ? ? ? 0.391 ? ? ? ? ? ? ? ? 3.598 ? ? ? ? 0.455 ? ? 3 1 0.860 ?
0.980 1.010 ? 3.330 ? 725 266 ? 205 77.100 ? ? ? ? 0.296 ? ? ? ? ? ? ? ? 3.537 ? ? ? ? 0.347 ? ? 4 1 0.962 ?
1.010 1.040 ? 4.020 ? 716 253 ? 206 81.400 ? ? ? ? 0.231 ? ? ? ? ? ? ? ? 3.476 ? ? ? ? 0.269 ? ? 5 1 0.985 ?
1.040 1.080 ? 4.550 ? 571 227 ? 167 73.600 ? ? ? ? 0.225 ? ? ? ? ? ? ? ? 3.419 ? ? ? ? 0.262 ? ? 6 1 0.973 ?
1.080 1.120 ? 5.280 ? 657 235 ? 190 80.900 ? ? ? ? 0.168 ? ? ? ? ? ? ? ? 3.458 ? ? ? ? 0.198 ? ? 7 1 0.975 ?
1.120 1.160 ? 6.060 ? 616 230 ? 174 75.700 ? ? ? ? 0.124 ? ? ? ? ? ? ? ? 3.540 ? ? ? ? 0.145 ? ? 8 1 0.992 ?
1.160 1.210 ? 4.810 ? 536 200 ? 160 80.000 ? ? ? ? 0.181 ? ? ? ? ? ? ? ? 3.350 ? ? ? ? 0.213 ? ? 9 1 0.991 ?
1.210 1.270 ? 5.480 ? 574 210 ? 164 78.100 ? ? ? ? 0.164 ? ? ? ? ? ? ? ? 3.500 ? ? ? ? 0.193 ? ? 10 1 0.992 ?
1.270 1.340 ? 6.520 ? 501 184 ? 141 76.600 ? ? ? ? 0.136 ? ? ? ? ? ? ? ? 3.553 ? ? ? ? 0.159 ? ? 11 1 0.992 ?
1.340 1.420 ? 6.170 ? 475 185 ? 143 77.300 ? ? ? ? 0.147 ? ? ? ? ? ? ? ? 3.322 ? ? ? ? 0.174 ? ? 12 1 0.987 ?
1.420 1.520 ? 7.180 ? 502 179 ? 146 81.600 ? ? ? ? 0.135 ? ? ? ? ? ? ? ? 3.438 ? ? ? ? 0.158 ? ? 13 1 0.987 ?
1.520 1.640 ? 7.890 ? 377 156 ? 114 73.100 ? ? ? ? 0.130 ? ? ? ? ? ? ? ? 3.307 ? ? ? ? 0.154 ? ? 14 1 0.996 ?
1.640 1.800 ? 7.760 ? 377 147 ? 111 75.500 ? ? ? ? 0.140 ? ? ? ? ? ? ? ? 3.396 ? ? ? ? 0.166 ? ? 15 1 0.956 ?
1.800 2.010 ? 9.150 ? 313 129 ? 98 76.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 3.194 ? ? ? ? 0.103 ? ? 16 1 0.996 ?
2.010 2.320 ? 10.060 ? 332 125 ? 98 78.400 ? ? ? ? 0.080 ? ? ? ? ? ? ? ? 3.388 ? ? ? ? 0.094 ? ? 17 1 0.991 ?
2.320 2.850 ? 9.460 ? 227 99 ? 73 73.700 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 3.110 ? ? ? ? 0.086 ? ? 18 1 0.998 ?
2.850 4.030 ? 11.820 ? 189 72 ? 57 79.200 ? ? ? ? 0.102 ? ? ? ? ? ? ? ? 3.316 ? ? ? ? 0.121 ? ? 19 1 0.986 ?
4.030 7.629 ? 10.130 ? 82 42 ? 29 69.000 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 2.828 ? ? ? ? 0.079 ? ? 20 1 0.994 ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 27.350
_refine.B_iso_mean 3.5520
_refine.B_iso_min 0.700
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6M9J
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 0.9000
_refine.ls_d_res_low 7.6290
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 2896
_refine.ls_number_reflns_R_free 290
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 77.4300
_refine.ls_percent_reflns_R_free 10.0100
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2342
_refine.ls_R_factor_R_free 0.2518
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2325
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.400
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 13.9200
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.0500
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.d_res_high 0.9000
_refine_hist.d_res_low 7.6290
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 39
_refine_hist.pdbx_number_residues_total 6
_refine_hist.pdbx_B_iso_mean_solvent 20.81
_refine_hist.pdbx_number_atoms_protein 36
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON CRYSTALLOGRAPHY' ? 0.008 ? 35 ? f_bond_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 1.119 ? 47 ? f_angle_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.071 ? 7 ? f_chiral_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.004 ? 6 ? f_plane_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 7.023 ? 10 ? f_dihedral_angle_d ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'ELECTRON CRYSTALLOGRAPHY' 0.9000 0.9409 377 . 38 339 78.0000 . . . 0.4214 0.0000 0.3109 . . . . . . 8 . . .
'ELECTRON CRYSTALLOGRAPHY' 0.9409 0.9904 366 . 36 330 80.0000 . . . 0.2962 0.0000 0.2575 . . . . . . 8 . . .
'ELECTRON CRYSTALLOGRAPHY' 0.9904 1.0524 358 . 36 322 77.0000 . . . 0.2493 0.0000 0.2423 . . . . . . 8 . . .
'ELECTRON CRYSTALLOGRAPHY' 1.0524 1.1334 359 . 36 323 78.0000 . . . 0.2204 0.0000 0.2013 . . . . . . 8 . . .
'ELECTRON CRYSTALLOGRAPHY' 1.1334 1.2470 356 . 36 320 77.0000 . . . 0.2590 0.0000 0.2410 . . . . . . 8 . . .
'ELECTRON CRYSTALLOGRAPHY' 1.2470 1.4264 363 . 37 326 77.0000 . . . 0.2361 0.0000 0.2554 . . . . . . 8 . . .
'ELECTRON CRYSTALLOGRAPHY' 1.4264 1.7933 361 . 36 325 77.0000 . . . 0.2452 0.0000 0.2450 . . . . . . 8 . . .
'ELECTRON CRYSTALLOGRAPHY' 1.7933 7.6290 356 . 35 321 76.0000 . . . 0.2284 0.0000 0.1993 . . . . . . 8 . . .
#
_struct.entry_id 6M9J
_struct.title 'Racemic-GSTSTA from degenerate octameric repeats in InaZ, residues 707-712'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6M9J
_struct_keywords.text 'amyloid, racemic, ice nucleation, MicroED, InaZ, pseudomonas syringae, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code ICEN_PSESY
_struct_ref.pdbx_db_accession P06620
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code GSTSTA
_struct_ref.pdbx_align_begin 707
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 6M9J
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P06620
_struct_ref_seq.db_align_beg 707
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 712
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 707
_struct_ref_seq.pdbx_auth_seq_align_end 712
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 0 ?
1 MORE 0 ?
1 'SSA (A^2)' 780 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_em_3d_fitting.entry_id 6M9J
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol 'AB INITIO MODEL'
_em_3d_fitting.ref_space RECIPROCAL
_em_3d_fitting.target_criteria 'maximum likelihood'
_em_3d_fitting.method ?
#
_em_3d_reconstruction.entry_id 6M9J
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution ?
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 8.0
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'L-GSTSTA from ice nucleation protein, inaZ, and its enantiomer, D-GSTSTA'
_em_entity_assembly.source NATURAL
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 6M9J
_em_imaging.accelerating_voltage 200
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen ?
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TECNAI F20'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_sample_support.citation_id ?
_em_sample_support.details unspecified
_em_sample_support.film_material ?
_em_sample_support.grid_material ?
_em_sample_support.grid_mesh_size ?
_em_sample_support.grid_type ?
_em_sample_support.id 1
_em_sample_support.method ?
_em_sample_support.specimen_id 1
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature ?
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.entry_id 6M9J
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 6M9J
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLY N N N N 14
GLY CA C N N 15
GLY C C N N 16
GLY O O N N 17
GLY OXT O N N 18
GLY H H N N 19
GLY H2 H N N 20
GLY HA2 H N N 21
GLY HA3 H N N 22
GLY HXT H N N 23
HOH O O N N 24
HOH H1 H N N 25
HOH H2 H N N 26
SER N N N N 27
SER CA C N S 28
SER C C N N 29
SER O O N N 30
SER CB C N N 31
SER OG O N N 32
SER OXT O N N 33
SER H H N N 34
SER H2 H N N 35
SER HA H N N 36
SER HB2 H N N 37
SER HB3 H N N 38
SER HG H N N 39
SER HXT H N N 40
THR N N N N 41
THR CA C N S 42
THR C C N N 43
THR O O N N 44
THR CB C N R 45
THR OG1 O N N 46
THR CG2 C N N 47
THR OXT O N N 48
THR H H N N 49
THR H2 H N N 50
THR HA H N N 51
THR HB H N N 52
THR HG1 H N N 53
THR HG21 H N N 54
THR HG22 H N N 55
THR HG23 H N N 56
THR HXT H N N 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLY N CA sing N N 13
GLY N H sing N N 14
GLY N H2 sing N N 15
GLY CA C sing N N 16
GLY CA HA2 sing N N 17
GLY CA HA3 sing N N 18
GLY C O doub N N 19
GLY C OXT sing N N 20
GLY OXT HXT sing N N 21
HOH O H1 sing N N 22
HOH O H2 sing N N 23
SER N CA sing N N 24
SER N H sing N N 25
SER N H2 sing N N 26
SER CA C sing N N 27
SER CA CB sing N N 28
SER CA HA sing N N 29
SER C O doub N N 30
SER C OXT sing N N 31
SER CB OG sing N N 32
SER CB HB2 sing N N 33
SER CB HB3 sing N N 34
SER OG HG sing N N 35
SER OXT HXT sing N N 36
THR N CA sing N N 37
THR N H sing N N 38
THR N H2 sing N N 39
THR CA C sing N N 40
THR CA CB sing N N 41
THR CA HA sing N N 42
THR C O doub N N 43
THR C OXT sing N N 44
THR CB OG1 sing N N 45
THR CB CG2 sing N N 46
THR CB HB sing N N 47
THR OG1 HG1 sing N N 48
THR CG2 HG21 sing N N 49
THR CG2 HG22 sing N N 50
THR CG2 HG23 sing N N 51
THR OXT HXT sing N N 52
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90
_em_3d_crystal_entity.angle_beta 104.5
_em_3d_crystal_entity.angle_gamma 90.0
_em_3d_crystal_entity.length_a 14.03
_em_3d_crystal_entity.length_b 9.22
_em_3d_crystal_entity.length_c 20.77
_em_3d_crystal_entity.space_group_name 'P 1 21/c 1'
_em_3d_crystal_entity.space_group_num 14
#
_em_crystal_formation.id 1
_em_crystal_formation.specimen_id 1
_em_crystal_formation.atmosphere ?
_em_crystal_formation.details '0.1 M imidazole, pH 8.0, 10% w/v PEG8000'
_em_crystal_formation.instrument ?
_em_crystal_formation.lipid_mixture ?
_em_crystal_formation.lipid_protein_ratio ?
_em_crystal_formation.temperature 298
_em_crystal_formation.time ?
_em_crystal_formation.time_unit ?
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 1156
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
_em_diffraction_shell.id 1
_em_diffraction_shell.em_diffraction_stats_id 1
_em_diffraction_shell.fourier_space_coverage 77.4
_em_diffraction_shell.high_resolution 7.63
_em_diffraction_shell.low_resolution 0.9
_em_diffraction_shell.multiplicity 3.4
_em_diffraction_shell.num_structure_factors 2896
_em_diffraction_shell.phase_residual 0.00000001
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details ?
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 77.4
_em_diffraction_stats.high_resolution 0.9
_em_diffraction_stats.num_intensities_measured 9884
_em_diffraction_stats.num_structure_factors 2906
_em_diffraction_stats.overall_phase_error 13.92
_em_diffraction_stats.overall_phase_residual 0.00000001
_em_diffraction_stats.phase_error_rejection_criteria 'not applicable'
_em_diffraction_stats.r_merge 0.128
_em_diffraction_stats.r_sym 0.128
#
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.id 1
_em_entity_assembly_naturalsource.ncbi_tax_id 321
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism 'Pseudomonas syringae pv. syringae'
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
_em_entity_assembly_naturalsource.cell ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.01
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
_em_imaging_optics.id 1
_em_imaging_optics.imaging_id 1
_em_imaging_optics.chr_aberration_corrector ?
_em_imaging_optics.energyfilter_lower ?
_em_imaging_optics.energyfilter_name ?
_em_imaging_optics.energyfilter_upper ?
_em_imaging_optics.energyfilter_slit_width ?
_em_imaging_optics.phase_plate ?
_em_imaging_optics.sph_aberration_corrector ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? Coot 0.8.9.1 ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MOLECULAR REPLACEMENT' ? ? ? 1 ? ?
9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ?
11 'CRYSTALLOGRAPHY MERGING' ? XSCALE ? 1 ? ?
12 RECONSTRUCTION ? SHELXD ? 1 ? ?
13 'MODEL REFINEMENT' ? PHENIX 1.12_2829 ? 1 ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration ?
_em_specimen.details ?
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'Department of Energy (DOE, United States)' 'United States' DE-FC02-02ER63421 1
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'P41 GM103403' 2
#
_atom_sites.entry_id 6M9J
_atom_sites.fract_transf_matrix[1][1] 0.071276
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.018412
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.108460
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.049727
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
H
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? 17.516 7.484 13.377 1.00 3.13 ? 707 GLY A N 1
ATOM 2 C CA . GLY A 1 1 ? 17.329 8.122 12.088 1.00 1.75 ? 707 GLY A CA 1
ATOM 3 C C . GLY A 1 1 ? 16.217 7.455 11.323 1.00 1.19 ? 707 GLY A C 1
ATOM 4 O O . GLY A 1 1 ? 15.860 6.314 11.611 1.00 1.85 ? 707 GLY A O 1
ATOM 5 H HA2 . GLY A 1 1 ? 17.106 9.057 12.212 1.00 2.10 ? 707 GLY A HA2 1
ATOM 6 H HA3 . GLY A 1 1 ? 18.146 8.061 11.568 1.00 2.10 ? 707 GLY A HA3 1
ATOM 7 N N . SER A 1 2 ? 15.651 8.163 10.355 1.00 1.29 ? 708 SER A N 1
ATOM 8 C CA . SER A 1 2 ? 14.613 7.580 9.518 1.00 1.31 ? 708 SER A CA 1
ATOM 9 C C . SER A 1 2 ? 14.665 8.201 8.132 1.00 1.55 ? 708 SER A C 1
ATOM 10 O O . SER A 1 2 ? 15.106 9.342 7.950 1.00 2.02 ? 708 SER A O 1
ATOM 11 C CB . SER A 1 2 ? 13.215 7.766 10.125 1.00 2.57 ? 708 SER A CB 1
ATOM 12 O OG . SER A 1 2 ? 12.793 9.113 10.054 1.00 3.67 ? 708 SER A OG 1
ATOM 13 H H . SER A 1 2 ? 15.849 8.978 10.162 1.00 1.55 ? 708 SER A H 1
ATOM 14 H HA . SER A 1 2 ? 14.777 6.628 9.428 1.00 1.58 ? 708 SER A HA 1
ATOM 15 H HB2 . SER A 1 2 ? 12.585 7.214 9.636 1.00 3.09 ? 708 SER A HB2 1
ATOM 16 H HB3 . SER A 1 2 ? 13.239 7.494 11.056 1.00 3.09 ? 708 SER A HB3 1
ATOM 17 H HG . SER A 1 2 ? 12.766 9.363 9.253 1.00 4.41 ? 708 SER A HG 1
ATOM 18 N N . THR A 1 3 ? 14.179 7.444 7.158 1.00 1.48 ? 709 THR A N 1
ATOM 19 C CA . THR A 1 3 ? 14.075 7.916 5.787 1.00 1.16 ? 709 THR A CA 1
ATOM 20 C C . THR A 1 3 ? 12.888 7.260 5.130 1.00 1.16 ? 709 THR A C 1
ATOM 21 O O . THR A 1 3 ? 12.589 6.102 5.414 1.00 1.75 ? 709 THR A O 1
ATOM 22 C CB . THR A 1 3 ? 15.311 7.552 4.982 1.00 3.14 ? 709 THR A CB 1
ATOM 23 O OG1 . THR A 1 3 ? 16.453 8.066 5.659 1.00 5.42 ? 709 THR A OG1 1
ATOM 24 C CG2 . THR A 1 3 ? 15.251 8.107 3.586 1.00 5.25 ? 709 THR A CG2 1
ATOM 25 H H . THR A 1 3 ? 13.898 6.638 7.269 1.00 1.77 ? 709 THR A H 1
ATOM 26 H HA . THR A 1 3 ? 13.956 8.878 5.772 1.00 1.39 ? 709 THR A HA 1
ATOM 27 H HB . THR A 1 3 ? 15.382 6.587 4.923 1.00 3.77 ? 709 THR A HB 1
ATOM 28 H HG1 . THR A 1 3 ? 17.150 7.876 5.231 1.00 6.51 ? 709 THR A HG1 1
ATOM 29 H HG21 . THR A 1 3 ? 16.051 7.861 3.096 1.00 6.30 ? 709 THR A HG21 1
ATOM 30 H HG22 . THR A 1 3 ? 14.475 7.754 3.122 1.00 6.30 ? 709 THR A HG22 1
ATOM 31 H HG23 . THR A 1 3 ? 15.186 9.075 3.617 1.00 6.30 ? 709 THR A HG23 1
ATOM 32 N N . SER A 1 4 ? 12.204 8.007 4.268 1.00 1.33 ? 710 SER A N 1
ATOM 33 C CA . SER A 1 4 ? 11.157 7.410 3.469 1.00 1.60 ? 710 SER A CA 1
ATOM 34 C C . SER A 1 4 ? 11.058 8.138 2.137 1.00 1.84 ? 710 SER A C 1
ATOM 35 O O . SER A 1 4 ? 11.360 9.332 2.048 1.00 1.92 ? 710 SER A O 1
ATOM 36 C CB . SER A 1 4 ? 9.814 7.404 4.201 1.00 2.86 ? 710 SER A CB 1
ATOM 37 O OG . SER A 1 4 ? 8.889 6.656 3.455 1.00 5.33 ? 710 SER A OG 1
ATOM 38 H H . SER A 1 4 ? 12.327 8.847 4.133 1.00 1.60 ? 710 SER A H 1
ATOM 39 H HA . SER A 1 4 ? 11.396 6.488 3.284 1.00 1.93 ? 710 SER A HA 1
ATOM 40 H HB2 . SER A 1 4 ? 9.926 6.999 5.075 1.00 3.43 ? 710 SER A HB2 1
ATOM 41 H HB3 . SER A 1 4 ? 9.493 8.315 4.290 1.00 3.43 ? 710 SER A HB3 1
ATOM 42 H HG . SER A 1 4 ? 8.146 6.644 3.846 1.00 6.40 ? 710 SER A HG 1
ATOM 43 N N . THR A 1 5 ? 10.666 7.393 1.098 1.00 1.36 ? 711 THR A N 1
ATOM 44 C CA . THR A 1 5 ? 10.364 7.961 -0.205 1.00 0.70 ? 711 THR A CA 1
ATOM 45 C C . THR A 1 5 ? 9.034 7.421 -0.690 1.00 1.07 ? 711 THR A C 1
ATOM 46 O O . THR A 1 5 ? 8.605 6.334 -0.306 1.00 1.63 ? 711 THR A O 1
ATOM 47 C CB . THR A 1 5 ? 11.418 7.660 -1.284 1.00 2.11 ? 711 THR A CB 1
ATOM 48 O OG1 . THR A 1 5 ? 11.443 6.250 -1.562 1.00 3.58 ? 711 THR A OG1 1
ATOM 49 C CG2 . THR A 1 5 ? 12.772 8.140 -0.859 1.00 2.49 ? 711 THR A CG2 1
ATOM 50 H H . THR A 1 5 ? 10.568 6.540 1.132 1.00 1.63 ? 711 THR A H 1
ATOM 51 H HA . THR A 1 5 ? 10.286 8.924 -0.121 1.00 0.85 ? 711 THR A HA 1
ATOM 52 H HB . THR A 1 5 ? 11.178 8.134 -2.096 1.00 2.53 ? 711 THR A HB 1
ATOM 53 H HG1 . THR A 1 5 ? 12.019 6.083 -2.151 1.00 4.30 ? 711 THR A HG1 1
ATOM 54 H HG21 . THR A 1 5 ? 13.425 7.943 -1.549 1.00 2.99 ? 711 THR A HG21 1
ATOM 55 H HG22 . THR A 1 5 ? 12.752 9.098 -0.708 1.00 2.99 ? 711 THR A HG22 1
ATOM 56 H HG23 . THR A 1 5 ? 13.038 7.697 -0.038 1.00 2.99 ? 711 THR A HG23 1
ATOM 57 N N . ALA A 1 6 ? 8.405 8.206 -1.568 1.00 1.30 ? 712 ALA A N 1
ATOM 58 C CA . ALA A 1 6 ? 7.203 7.824 -2.292 1.00 1.96 ? 712 ALA A CA 1
ATOM 59 C C . ALA A 1 6 ? 7.285 8.356 -3.711 1.00 2.70 ? 712 ALA A C 1
ATOM 60 O O . ALA A 1 6 ? 7.932 9.381 -3.940 1.00 4.52 ? 712 ALA A O 1
ATOM 61 C CB . ALA A 1 6 ? 5.946 8.388 -1.617 1.00 2.97 ? 712 ALA A CB 1
ATOM 62 O OXT . ALA A 1 6 ? 6.691 7.807 -4.647 1.00 5.34 ? 712 ALA A OXT 1
ATOM 63 H H . ALA A 1 6 ? 8.674 8.998 -1.765 1.00 1.56 ? 712 ALA A H 1
ATOM 64 H HA . ALA A 1 6 ? 7.133 6.857 -2.324 1.00 2.35 ? 712 ALA A HA 1
ATOM 65 H HB1 . ALA A 1 6 ? 5.166 8.115 -2.125 1.00 3.56 ? 712 ALA A HB1 1
ATOM 66 H HB2 . ALA A 1 6 ? 5.891 8.041 -0.713 1.00 3.56 ? 712 ALA A HB2 1
ATOM 67 H HB3 . ALA A 1 6 ? 6.006 9.356 -1.597 1.00 3.56 ? 712 ALA A HB3 1
HETATM 68 O O . HOH B 2 . ? 7.762 5.155 5.414 1.00 27.35 ? 801 HOH A O 1
HETATM 69 O O . HOH B 2 . ? 11.096 9.136 7.873 1.00 25.39 ? 802 HOH A O 1
HETATM 70 O O . HOH B 2 . ? 7.081 7.957 6.404 1.00 9.68 ? 803 HOH A O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . GLY A 1 ? 0.0300 0.0592 0.0298 -0.0001 0.0150 -0.0020 707 GLY A N
2 C CA . GLY A 1 ? 0.0146 0.0358 0.0160 -0.0010 0.0053 0.0053 707 GLY A CA
3 C C . GLY A 1 ? 0.0119 0.0207 0.0129 0.0033 -0.0022 0.0040 707 GLY A C
4 O O . GLY A 1 ? 0.0229 0.0300 0.0173 0.0052 0.0105 0.0002 707 GLY A O
7 N N . SER A 2 ? 0.0192 0.0149 0.0149 0.0061 -0.0092 -0.0047 708 SER A N
8 C CA . SER A 2 ? 0.0256 0.0104 0.0140 0.0053 0.0016 -0.0034 708 SER A CA
9 C C . SER A 2 ? 0.0325 0.0117 0.0145 0.0000 -0.0085 -0.0026 708 SER A C
10 O O . SER A 2 ? 0.0392 0.0128 0.0248 0.0004 -0.0177 -0.0003 708 SER A O
11 C CB . SER A 2 ? 0.0251 0.0463 0.0264 -0.0124 0.0096 -0.0076 708 SER A CB
12 O OG . SER A 2 ? 0.0278 0.0638 0.0479 0.0185 0.0086 0.0013 708 SER A OG
18 N N . THR A 3 ? 0.0288 0.0129 0.0143 0.0078 -0.0084 -0.0045 709 THR A N
19 C CA . THR A 3 ? 0.0143 0.0100 0.0197 0.0031 -0.0088 -0.0055 709 THR A CA
20 C C . THR A 3 ? 0.0204 0.0073 0.0163 0.0010 -0.0104 -0.0007 709 THR A C
21 O O . THR A 3 ? 0.0269 0.0144 0.0253 -0.0014 -0.0093 0.0076 709 THR A O
22 C CB . THR A 3 ? 0.0170 0.0547 0.0478 0.0014 0.0056 -0.0110 709 THR A CB
23 O OG1 . THR A 3 ? 0.0337 0.0953 0.0771 0.0084 0.0203 -0.0059 709 THR A OG1
24 C CG2 . THR A 3 ? 0.0428 0.0868 0.0699 0.0104 0.0288 -0.0022 709 THR A CG2
32 N N . SER A 4 ? 0.0277 0.0091 0.0138 -0.0036 -0.0102 0.0019 710 SER A N
33 C CA . SER A 4 ? 0.0316 0.0107 0.0187 0.0026 -0.0136 -0.0015 710 SER A CA
34 C C . SER A 4 ? 0.0393 0.0119 0.0185 0.0028 -0.0136 -0.0013 710 SER A C
35 O O . SER A 4 ? 0.0413 0.0152 0.0165 0.0014 -0.0120 0.0001 710 SER A O
36 C CB . SER A 4 ? 0.0186 0.0449 0.0451 0.0105 -0.0023 -0.0119 710 SER A CB
37 O OG . SER A 4 ? 0.0257 0.0928 0.0841 0.0025 0.0108 -0.0042 710 SER A OG
43 N N . THR A 5 ? 0.0270 0.0107 0.0140 -0.0001 -0.0103 -0.0008 711 THR A N
44 C CA . THR A 5 ? 0.0085 0.0077 0.0107 0.0019 0.0014 0.0048 711 THR A CA
45 C C . THR A 5 ? 0.0153 0.0145 0.0111 -0.0008 -0.0036 -0.0035 711 THR A C
46 O O . THR A 5 ? 0.0126 0.0303 0.0190 -0.0027 0.0034 0.0052 711 THR A O
47 C CB . THR A 5 ? 0.0129 0.0394 0.0278 0.0025 0.0069 0.0018 711 THR A CB
48 O OG1 . THR A 5 ? 0.0347 0.0501 0.0512 -0.0013 0.0230 -0.0100 711 THR A OG1
49 C CG2 . THR A 5 ? 0.0153 0.0435 0.0359 0.0065 0.0080 0.0013 711 THR A CG2
57 N N . ALA A 6 ? 0.0161 0.0180 0.0155 0.0030 -0.0061 -0.0043 712 ALA A N
58 C CA . ALA A 6 ? 0.0138 0.0307 0.0299 0.0064 0.0055 -0.0061 712 ALA A CA
59 C C . ALA A 6 ? 0.0309 0.0511 0.0207 -0.0063 0.0110 -0.0003 712 ALA A C
60 O O . ALA A 6 ? 0.0639 0.0703 0.0377 -0.0045 0.0251 0.0107 712 ALA A O
61 C CB . ALA A 6 ? 0.0231 0.0447 0.0449 -0.0011 0.0170 -0.0036 712 ALA A CB
62 O OXT . ALA A 6 ? 0.0427 0.1169 0.0432 -0.0230 0.0097 -0.0067 712 ALA A OXT
68 O O . HOH B . ? 0.3151 0.4474 0.2770 0.0616 -0.0605 -0.0594 801 HOH A O
69 O O . HOH B . ? 0.3194 0.3150 0.3303 0.1805 -0.0493 0.0197 802 HOH A O
70 O O . HOH B . ? 0.1481 0.1411 0.0786 -0.0029 0.0436 0.0383 803 HOH A O
#