HEADER PROTEIN FIBRIL 23-AUG-18 6M9I
TITLE L-GSTSTA FROM DEGENERATE OCTAMERIC REPEATS IN INAZ, RESIDUES 707-712
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ICE NUCLEATION PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 707-712;
COMPND 5 SYNONYM: INAZ;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: L-GSTSTA
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. SYRINGAE;
SOURCE 4 ORGANISM_TAXID: 321;
SOURCE 5 OTHER_DETAILS: L-GSTSTA
KEYWDS AMYLOID, RACEMIC, ICE NUCLEATION, MICROED, INAZ, PSEUDOMONAS
KEYWDS 2 SYRINGAE, PROTEIN FIBRIL
EXPDTA ELECTRON CRYSTALLOGRAPHY
AUTHOR C.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO,D.CASCIO,T.GONEN,
AUTHOR 2 M.R.SAWAYA,J.A.RODRIGUEZ
REVDAT 3 13-MAR-24 6M9I 1 REMARK
REVDAT 2 04-DEC-19 6M9I 1 REMARK
REVDAT 1 27-MAR-19 6M9I 0
JRNL AUTH C.T.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO,
JRNL AUTH 2 D.CASCIO,T.GONEN,M.R.SAWAYA,J.A.RODRIGUEZ
JRNL TITL HOMOCHIRAL AND RACEMIC MICROED STRUCTURES OF A PEPTIDE
JRNL TITL 2 REPEAT FROM THE ICE-NUCLEATION PROTEIN INAZ.
JRNL REF IUCRJ V. 6 197 2019
JRNL REFN ESSN 2052-2525
JRNL PMID 30867917
JRNL DOI 10.1107/S2052252518017621
REMARK 2
REMARK 2 RESOLUTION. 0.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.12_2829
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 0.90
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450
REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6
REMARK 3 NUMBER OF REFLECTIONS : 1747
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.219
REMARK 3 R VALUE (WORKING SET) : 0.217
REMARK 3 FREE R VALUE : 0.232
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900
REMARK 3 FREE R VALUE TEST SET COUNT : 173
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 7.2715 - 1.7965 0.83 210 22 0.1877 0.1731
REMARK 3 2 1.7965 - 1.4295 0.88 206 23 0.1991 0.2374
REMARK 3 3 1.4295 - 1.2498 0.88 198 22 0.1965 0.1737
REMARK 3 4 1.2498 - 1.1360 0.87 196 22 0.2285 0.2244
REMARK 3 5 1.1360 - 1.0548 0.89 194 22 0.2262 0.3107
REMARK 3 6 1.0548 - 0.9928 0.87 190 20 0.2306 0.2908
REMARK 3 7 0.9928 - 0.9432 0.90 194 22 0.2927 0.3740
REMARK 3 8 0.9432 - 0.9022 0.82 186 20 0.3049 0.2866
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.050
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 42.62
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 1.17
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 35
REMARK 3 ANGLE : 1.057 47
REMARK 3 CHIRALITY : 0.037 7
REMARK 3 PLANARITY : 0.004 6
REMARK 3 DIHEDRAL : 7.542 10
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6M9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-18.
REMARK 100 THE DEPOSITION ID IS D_1000236316.
REMARK 240
REMARK 240 EXPERIMENTAL DETAILS
REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY
REMARK 240 SAMPLE TYPE : 3D ARRAY
REMARK 240 SPECIMEN TYPE : NULL
REMARK 240 DATA ACQUISITION
REMARK 240 DATE OF DATA COLLECTION : 24-SEP-17
REMARK 240 TEMPERATURE (KELVIN) : NULL
REMARK 240 PH : NULL
REMARK 240 NUMBER OF CRYSTALS USED : NULL
REMARK 240 MICROSCOPE MODEL : FEI TECNAI F20
REMARK 240 DETECTOR TYPE : TVIPS TEMCAM-F416 (4K X 4K)
REMARK 240 ACCELERATION VOLTAGE (KV) : 200
REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1760
REMARK 240 RESOLUTION RANGE HIGH (A) : 0.900
REMARK 240 RESOLUTION RANGE LOW (A) : 7.271
REMARK 240 DATA SCALING SOFTWARE : XSCALE
REMARK 240 COMPLETENESS FOR RANGE (%) : 85.5
REMARK 240 DATA REDUNDANCY : 4.269
REMARK 240 IN THE HIGHEST RESOLUTION SHELL
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :0.90
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.00
REMARK 240 COMPLETENESS FOR SHELL (%) : 83.7
REMARK 240 DATA REDUNDANCY IN SHELL : 4.21
REMARK 240 R MERGE FOR SHELL (I) : 0.35700
REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 240 SOFTWARE USED : SHELXD
REMARK 240 STARTING MODEL : NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 4.59500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.21500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.94500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 11.21500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 4.59500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.94500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6EEX RELATED DB: PDB
DBREF 6M9I A 707 712 UNP P06620 ICEN_PSESY 707 712
SEQRES 1 A 6 GLY SER THR SER THR ALA
FORMUL 2 HOH *(H2 O)
CRYST1 9.190 11.890 22.430 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.108814 0.000000 0.000000 0.00000
SCALE2 0.000000 0.084104 0.000000 0.00000
SCALE3 0.000000 0.000000 0.044583 0.00000
ATOM 1 N GLY A 707 3.159 1.988 -9.348 1.00 1.36 N
ANISOU 1 N GLY A 707 232 173 113 -78 10 -54 N
ATOM 2 CA GLY A 707 3.551 2.786 -8.206 1.00 0.36 C
ANISOU 2 CA GLY A 707 51 31 53 -13 -8 -16 C
ATOM 3 C GLY A 707 2.922 2.280 -6.940 1.00 0.13 C
ANISOU 3 C GLY A 707 20 6 23 2 -2 -1 C
ATOM 4 O GLY A 707 1.785 1.805 -6.933 1.00 0.55 O
ANISOU 4 O GLY A 707 125 39 44 -18 -36 7 O
ATOM 5 HA2 GLY A 707 4.515 2.761 -8.106 1.00 0.44 H
ATOM 6 HA3 GLY A 707 3.277 3.707 -8.342 1.00 0.44 H
ATOM 7 N SER A 708 3.657 2.389 -5.845 1.00 0.14 N
ANISOU 7 N SER A 708 11 10 32 1 -6 -5 N
ATOM 8 CA SER A 708 3.087 2.071 -4.554 1.00 0.34 C
ANISOU 8 CA SER A 708 19 46 62 10 1 -5 C
ATOM 9 C SER A 708 3.722 2.972 -3.515 1.00 0.84 C
ANISOU 9 C SER A 708 55 195 69 24 -11 -49 C
ATOM 10 O SER A 708 4.897 3.331 -3.616 1.00 0.83 O
ANISOU 10 O SER A 708 73 158 86 23 -24 -56 O
ATOM 11 CB SER A 708 3.288 0.598 -4.192 1.00 1.22 C
ANISOU 11 CB SER A 708 178 154 129 -65 -26 46 C
ATOM 12 OG SER A 708 4.664 0.280 -4.024 1.00 2.01 O
ANISOU 12 OG SER A 708 373 193 197 67 -136 -11 O
ATOM 13 H SER A 708 4.479 2.642 -5.824 1.00 0.18 H
ATOM 14 HA SER A 708 2.134 2.252 -4.572 1.00 0.42 H
ATOM 15 HB2 SER A 708 2.821 0.413 -3.363 1.00 1.47 H
ATOM 16 HB3 SER A 708 2.925 0.048 -4.904 1.00 1.47 H
ATOM 17 HG SER A 708 4.993 0.747 -3.409 1.00 2.43 H
ATOM 18 N THR A 709 2.927 3.347 -2.522 1.00 0.60 N
ANISOU 18 N THR A 709 42 139 46 29 -8 -27 N
ATOM 19 CA THR A 709 3.435 4.070 -1.371 1.00 0.57 C
ANISOU 19 CA THR A 709 49 114 53 36 0 -10 C
ATOM 20 C THR A 709 2.700 3.564 -0.151 1.00 0.43 C
ANISOU 20 C THR A 709 27 102 33 5 -2 -22 C
ATOM 21 O THR A 709 1.470 3.563 -0.119 1.00 0.37 O
ANISOU 21 O THR A 709 33 76 31 -22 7 -7 O
ATOM 22 CB THR A 709 3.199 5.576 -1.493 1.00 0.96 C
ANISOU 22 CB THR A 709 154 90 122 -22 5 10 C
ATOM 23 OG1 THR A 709 3.913 6.082 -2.623 1.00 1.06 O
ANISOU 23 OG1 THR A 709 188 66 148 -27 -23 33 O
ATOM 24 CG2 THR A 709 3.671 6.285 -0.222 1.00 0.84 C
ANISOU 24 CG2 THR A 709 85 126 109 -44 30 20 C
ATOM 25 H THR A 709 2.081 3.193 -2.493 1.00 0.73 H
ATOM 26 HA THR A 709 4.385 3.903 -1.263 1.00 0.70 H
ATOM 27 HB THR A 709 2.251 5.747 -1.607 1.00 1.17 H
ATOM 28 HG1 THR A 709 3.788 6.909 -2.696 1.00 1.29 H
ATOM 29 HG21 THR A 709 3.521 7.240 -0.299 1.00 1.03 H
ATOM 30 HG22 THR A 709 3.181 5.950 0.546 1.00 1.03 H
ATOM 31 HG23 THR A 709 4.618 6.124 -0.085 1.00 1.03 H
ATOM 32 N SER A 710 3.458 3.157 0.854 1.00 0.35 N
ANISOU 32 N SER A 710 22 80 29 -8 0 -9 N
ATOM 33 CA SER A 710 2.875 2.741 2.110 1.00 0.42 C
ANISOU 33 CA SER A 710 21 71 67 -11 -5 -2 C
ATOM 34 C SER A 710 3.613 3.419 3.246 1.00 0.19 C
ANISOU 34 C SER A 710 12 29 32 -9 -1 -1 C
ATOM 35 O SER A 710 4.819 3.673 3.163 1.00 0.44 O
ANISOU 35 O SER A 710 62 75 30 3 22 -5 O
ATOM 36 CB SER A 710 2.942 1.228 2.276 1.00 1.51 C
ANISOU 36 CB SER A 710 130 250 193 22 -55 -61 C
ATOM 37 OG SER A 710 2.310 0.587 1.183 1.00 2.34 O
ANISOU 37 OG SER A 710 359 248 283 -48 -31 -74 O
ATOM 38 H SER A 710 4.317 3.113 0.832 1.00 0.43 H
ATOM 39 HA SER A 710 1.944 3.013 2.141 1.00 0.52 H
ATOM 40 HB2 SER A 710 3.872 0.953 2.311 1.00 1.83 H
ATOM 41 HB3 SER A 710 2.489 0.978 3.097 1.00 1.83 H
ATOM 42 HG SER A 710 2.348 -0.247 1.277 1.00 2.83 H
ATOM 43 N THR A 711 2.876 3.725 4.306 1.00 0.27 N
ANISOU 43 N THR A 711 42 17 44 -1 23 -2 N
ATOM 44 CA THR A 711 3.475 4.215 5.528 1.00 0.25 C
ANISOU 44 CA THR A 711 19 17 58 -2 18 -6 C
ATOM 45 C THR A 711 2.882 3.490 6.714 1.00 0.38 C
ANISOU 45 C THR A 711 25 58 60 -13 11 8 C
ATOM 46 O THR A 711 1.789 2.920 6.645 1.00 0.76 O
ANISOU 46 O THR A 711 67 166 53 -48 5 -4 O
ATOM 47 CB THR A 711 3.235 5.715 5.762 1.00 0.95 C
ANISOU 47 CB THR A 711 97 62 202 19 20 -2 C
ATOM 48 OG1 THR A 711 1.845 5.939 6.024 1.00 1.62 O
ANISOU 48 OG1 THR A 711 245 118 252 60 67 -25 O
ATOM 49 CG2 THR A 711 3.690 6.519 4.570 1.00 1.07 C
ANISOU 49 CG2 THR A 711 153 68 186 41 12 20 C
ATOM 50 H THR A 711 2.019 3.657 4.337 1.00 0.34 H
ATOM 51 HA THR A 711 4.431 4.052 5.510 1.00 0.31 H
ATOM 52 HB THR A 711 3.752 6.001 6.531 1.00 1.16 H
ATOM 53 HG1 THR A 711 1.705 6.757 6.153 1.00 1.96 H
ATOM 54 HG21 THR A 711 3.534 7.463 4.728 1.00 1.30 H
ATOM 55 HG22 THR A 711 4.637 6.377 4.416 1.00 1.30 H
ATOM 56 HG23 THR A 711 3.198 6.246 3.780 1.00 1.30 H
ATOM 57 N ALA A 712 3.614 3.553 7.812 1.00 0.54 N
ANISOU 57 N ALA A 712 43 72 92 -24 -9 -15 N
ATOM 58 CA ALA A 712 3.099 3.192 9.112 1.00 1.28 C
ANISOU 58 CA ALA A 712 139 211 134 -9 -71 -37 C
ATOM 59 C ALA A 712 3.984 3.851 10.148 1.00 1.47 C
ANISOU 59 C ALA A 712 205 229 124 -10 -23 -50 C
ATOM 60 O ALA A 712 5.039 4.385 9.813 1.00 2.70 O
ANISOU 60 O ALA A 712 368 441 216 -90 -68 -112 O
ATOM 61 CB ALA A 712 3.076 1.712 9.288 1.00 3.27 C
ANISOU 61 CB ALA A 712 631 392 218 44 -124 -69 C
ATOM 62 OXT ALA A 712 3.635 3.883 11.325 1.00 0.81 O
ANISOU 62 OXT ALA A 712 159 68 79 -34 -8 -21 O
ATOM 63 H ALA A 712 4.435 3.809 7.826 1.00 0.67 H
ATOM 64 HA ALA A 712 2.196 3.532 9.212 1.00 1.55 H
ATOM 65 HB1 ALA A 712 2.726 1.504 10.169 1.00 3.94 H
ATOM 66 HB2 ALA A 712 2.507 1.322 8.606 1.00 3.94 H
ATOM 67 HB3 ALA A 712 3.979 1.369 9.202 1.00 3.94 H
TER 68 ALA A 712
HETATM 69 O HOH A 801 4.988 0.253 -1.287 1.00 3.28 O
ANISOU 69 O HOH A 801 426 437 385 122 -121 160 O
MASTER 169 0 0 0 0 0 0 6 37 1 0 1
END