HEADER PROTEIN FIBRIL 10-APR-18 6G9G
TITLE CRYSTAL STRUCTURE OF THE TASNSS SEGMENT FROM THE R4-R5 LOOP OF THE E.
TITLE 2 COLI BIOFILM-ASSOCIATED CSGA CURLI PROTEIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MAJOR CURLIN SUBUNIT;
COMPND 3 CHAIN: B;
COMPND 4 FRAGMENT: AMYLOID SPINE SEGMENT TASNSS FROM CSGA (RESIDUES 129-134)
COMPND 5 SECRETED BY E. COLI;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 4 ORGANISM_TAXID: 562;
SOURCE 5 OTHER_DETAILS: TASNSS FROM CSGA, SYNTHESIZED
KEYWDS BACTERIAL FIBRIL FROM E. COLI, PROTEIN FIBRIL
EXPDTA X-RAY DIFFRACTION
AUTHOR M.LANDAU,S.PEROV
REVDAT 3 08-MAY-24 6G9G 1 REMARK
REVDAT 2 23-OCT-19 6G9G 1 JRNL
REVDAT 1 24-APR-19 6G9G 0
JRNL AUTH S.PEROV,O.LIDOR,N.SALINAS,N.GOLAN,E.TAYEB-FLIGELMAN,
JRNL AUTH 2 M.DESHMUKH,D.WILLBOLD,M.LANDAU
JRNL TITL STRUCTURAL INSIGHTS INTO CURLI CSGA CROSS-BETA FIBRIL
JRNL TITL 2 ARCHITECTURE INSPIRE REPURPOSING OF ANTI-AMYLOID COMPOUNDS
JRNL TITL 3 AS ANTI-BIOFILM AGENTS.
JRNL REF PLOS PATHOG. V. 15 07978 2019
JRNL REFN ESSN 1553-7374
JRNL PMID 31469892
JRNL DOI 10.1371/JOURNAL.PPAT.1007978
REMARK 2
REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.81
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7
REMARK 3 NUMBER OF REFLECTIONS : 349
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.108
REMARK 3 R VALUE (WORKING SET) : 0.104
REMARK 3 FREE R VALUE : 0.135
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100
REMARK 3 FREE R VALUE TEST SET COUNT : 39
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 39
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 1
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 18.33
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.97
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.96000
REMARK 3 B22 (A**2) : 1.30000
REMARK 3 B33 (A**2) : -0.34000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.080
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.859
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA
REMARK 3 BOND LENGTH (A) : NULL ; NULL
REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL
REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL
REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL
REMARK 3
REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL
REMARK 3
REMARK 3 NON-BONDED CONTACT RESTRAINTS.
REMARK 3 SINGLE TORSION (A) : NULL ; NULL
REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL
REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL
REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL
REMARK 3
REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS.
REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL
REMARK 3 PLANAR (DEGREES) : NULL ; NULL
REMARK 3 STAGGERED (DEGREES) : NULL ; NULL
REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4
REMARK 4 6G9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-APR-18.
REMARK 100 THE DEPOSITION ID IS D_1200009574.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 02-MAY-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY
REMARK 200 BEAMLINE : P14 (MX2)
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 389
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600
REMARK 200 RESOLUTION RANGE LOW (A) : 10.810
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7
REMARK 200 DATA REDUNDANCY : 8.686
REMARK 200 R MERGE (I) : 0.22200
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 6.0700
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85
REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7
REMARK 200 DATA REDUNDANCY IN SHELL : 9.23
REMARK 200 R MERGE FOR SHELL (I) : 0.55000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 2.770
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): NULL
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR CONTAINED 0.2 M LITHIUM
REMARK 280 SULFATE, 0.1 M TRIS-HCL PH 8.5, 30%(W/V) PEG 4000, AND 10 MM OF
REMARK 280 THE TAIVVQ PEPTIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 4.66000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 10.64500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 6.27500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 10.64500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 4.66000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 6.27500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 840 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 6G9G B 1 6 UNP P28307 CSGA_ECOLI 129 134
SEQRES 1 B 6 THR ALA SER ASN SER SER
FORMUL 2 HOH *(H2 O)
CRYST1 9.320 12.550 21.290 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.107296 0.000000 0.000000 0.00000
SCALE2 0.000000 0.079681 0.000000 0.00000
SCALE3 0.000000 0.000000 0.046970 0.00000
ATOM 1 N THR B 1 2.325 1.455 -9.383 1.00 9.20 N
ATOM 2 CA THR B 1 1.335 1.614 -8.296 1.00 9.21 C
ATOM 3 C THR B 1 2.012 2.345 -7.148 1.00 8.69 C
ATOM 4 O THR B 1 3.168 2.728 -7.261 1.00 9.26 O
ATOM 5 CB THR B 1 0.827 0.242 -7.849 1.00 9.19 C
ATOM 6 OG1 THR B 1 1.926 -0.530 -7.398 1.00 9.24 O
ATOM 7 CG2 THR B 1 0.161 -0.480 -8.996 1.00 9.47 C
ATOM 8 N ALA B 2 1.300 2.558 -6.064 1.00 8.28 N
ATOM 9 CA ALA B 2 1.886 3.218 -4.913 1.00 8.25 C
ATOM 10 C ALA B 2 1.146 2.819 -3.682 1.00 8.37 C
ATOM 11 O ALA B 2 -0.035 2.528 -3.728 1.00 8.04 O
ATOM 12 CB ALA B 2 1.826 4.718 -5.087 1.00 8.48 C
ATOM 13 N SER B 3 1.854 2.790 -2.569 1.00 8.22 N
ATOM 14 CA SER B 3 1.229 2.435 -1.324 1.00 8.44 C
ATOM 15 C SER B 3 1.995 3.019 -0.174 1.00 8.07 C
ATOM 16 O SER B 3 3.161 3.367 -0.292 1.00 7.90 O
ATOM 17 CB SER B 3 1.122 0.910 -1.203 1.00 8.87 C
ATOM 18 OG SER B 3 2.378 0.279 -1.003 1.00 9.16 O
ATOM 19 N ASN B 4 1.304 3.155 0.939 1.00 8.27 N
ATOM 20 CA ASN B 4 1.945 3.559 2.143 1.00 8.59 C
ATOM 21 C ASN B 4 1.190 3.059 3.352 1.00 8.90 C
ATOM 22 O ASN B 4 0.082 2.526 3.250 1.00 8.74 O
ATOM 23 CB ASN B 4 2.150 5.089 2.179 1.00 9.09 C
ATOM 24 CG ASN B 4 0.852 5.881 2.086 1.00 9.48 C
ATOM 25 OD1 ASN B 4 -0.220 5.397 2.451 1.00 10.42 O
ATOM 26 ND2 ASN B 4 0.946 7.113 1.593 1.00 9.56 N
ATOM 27 N SER B 5 1.833 3.225 4.481 1.00 9.20 N
ATOM 28 CA SER B 5 1.222 2.915 5.727 1.00 9.94 C
ATOM 29 C SER B 5 1.892 3.723 6.793 1.00 10.25 C
ATOM 30 O SER B 5 3.047 4.147 6.645 1.00 9.63 O
ATOM 31 CB SER B 5 1.351 1.435 6.021 1.00 10.82 C
ATOM 32 OG SER B 5 2.684 1.006 5.936 1.00 12.04 O
ATOM 33 N SER B 6 1.171 3.907 7.881 1.00 10.73 N
ATOM 34 CA SER B 6 1.684 4.604 9.051 1.00 11.98 C
ATOM 35 C SER B 6 0.986 4.048 10.301 1.00 13.14 C
ATOM 36 O SER B 6 0.062 3.213 10.148 1.00 14.49 O
ATOM 37 CB SER B 6 1.392 6.093 8.902 1.00 12.04 C
ATOM 38 OG SER B 6 0.013 6.316 8.730 1.00 11.79 O
ATOM 39 OXT SER B 6 1.286 4.477 11.436 1.00 13.00 O
TER 40 SER B 6
HETATM 41 O HOH B 101 -0.695 4.470 13.062 1.00 20.74 O
MASTER 196 0 0 0 0 0 0 6 40 1 0 1
END