data_6G9G
#
_entry.id 6G9G
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.391
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6G9G pdb_00006g9g 10.2210/pdb6g9g/pdb
WWPDB D_1200009574 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2019-04-24
2 'Structure model' 1 1 2019-10-23
3 'Structure model' 1 2 2024-05-08
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' chem_comp_atom
4 3 'Structure model' chem_comp_bond
5 3 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.journal_id_ISSN'
5 2 'Structure model' '_citation.journal_volume'
6 2 'Structure model' '_citation.page_first'
7 2 'Structure model' '_citation.page_last'
8 2 'Structure model' '_citation.pdbx_database_id_DOI'
9 2 'Structure model' '_citation.pdbx_database_id_PubMed'
10 2 'Structure model' '_citation.title'
11 2 'Structure model' '_citation.year'
12 3 'Structure model' '_database_2.pdbx_DOI'
13 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6G9G
_pdbx_database_status.recvd_initial_deposition_date 2018-04-10
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBE
_pdbx_database_status.process_site PDBE
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Landau, M.' 1 ?
'Perov, S.' 2 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Plos Pathog.'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1553-7374
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 15
_citation.language ?
_citation.page_first e1007978
_citation.page_last e1007978
_citation.title
;Structural Insights into Curli CsgA Cross-beta Fibril Architecture Inspire Repurposing of Anti-amyloid Compounds as Anti-biofilm Agents.
;
_citation.year 2019
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1371/journal.ppat.1007978
_citation.pdbx_database_id_PubMed 31469892
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Perov, S.' 1 ?
primary 'Lidor, O.' 2 0000-0001-6392-4647
primary 'Salinas, N.' 3 0000-0002-3511-2243
primary 'Golan, N.' 4 0000-0001-5064-0776
primary 'Tayeb-Fligelman, E.' 5 ?
primary 'Deshmukh, M.' 6 0000-0002-3704-3229
primary 'Willbold, D.' 7 0000-0002-0065-7366
primary 'Landau, M.' 8 0000-0002-1743-3430
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Major curlin subunit' 565.533 1 ? ? 'Amyloid spine segment TASNSS from CsgA (residues 129-134) secreted by E. coli'
?
2 water nat water 18.015 1 ? ? ?
?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code TASNSS
_entity_poly.pdbx_seq_one_letter_code_can TASNSS
_entity_poly.pdbx_strand_id B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 ALA n
1 3 SER n
1 4 ASN n
1 5 SER n
1 6 SER n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Escherichia coli'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 562
_pdbx_entity_src_syn.details 'TASNSS from CsgA, synthesized'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
HOH non-polymer . WATER ? 'H2 O' 18.015
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR B . n
A 1 2 ALA 2 2 2 ALA ALA B . n
A 1 3 SER 3 3 3 SER SER B . n
A 1 4 ASN 4 4 4 ASN ASN B . n
A 1 5 SER 5 5 5 SER SER B . n
A 1 6 SER 6 6 6 SER SER B . n
#
_pdbx_nonpoly_scheme.asym_id B
_pdbx_nonpoly_scheme.entity_id 2
_pdbx_nonpoly_scheme.mon_id HOH
_pdbx_nonpoly_scheme.ndb_seq_num 1
_pdbx_nonpoly_scheme.pdb_seq_num 101
_pdbx_nonpoly_scheme.auth_seq_num 1
_pdbx_nonpoly_scheme.pdb_mon_id HOH
_pdbx_nonpoly_scheme.auth_mon_id HOH
_pdbx_nonpoly_scheme.pdb_strand_id B
_pdbx_nonpoly_scheme.pdb_ins_code .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data reduction' ? ? 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/ ? XDS ? ? package . 1
? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 2
? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ?
http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 3
? refinement ? ? 'Garib N. Murshudov' garib@ysbl.york.ac.uk ? ? ? ? Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html ? REFMAC ? ? program . 4
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Sep. 1, 2017' ? ? ? C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.24 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 6G9G
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 9.320
_cell.length_a_esd ?
_cell.length_b 12.550
_cell.length_b_esd ?
_cell.length_c 21.290
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6G9G
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6G9G
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
'Reservoir contained 0.2 M Lithium sulfate, 0.1 M Tris-HCl pH 8.5, 30%(w/v) PEG 4000, and 10 mM of the TAIVVQ peptide'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS 6M-F'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2016-05-02
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9763
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9763
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 'P14 (MX2)'
_diffrn_source.pdbx_synchrotron_site 'PETRA III, EMBL c/o DESY'
#
_reflns.B_iso_Wilson_estimate 18.334
_reflns.entry_id 6G9G
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.600
_reflns.d_resolution_low 10.810
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 389
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 97.700
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 8.686
_reflns.pdbx_Rmerge_I_obs 0.222
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 6.070
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.904
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.237
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 3379
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.986
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.600 1.850 ? 2.770 ? ? ? ? 130 97.700 ? ? ? ? 0.550 ? ? ? ? ? ? ? ? 9.231 ? ? ? ? 0.582 ? ? 1 1 0.890 ?
1.850 2.270 ? 6.670 ? ? ? ? 112 99.100 ? ? ? ? 0.251 ? ? ? ? ? ? ? ? 8.884 ? ? ? ? 0.267 ? ? 2 1 0.975 ?
2.270 3.210 ? 8.240 ? ? ? ? 93 96.900 ? ? ? ? 0.223 ? ? ? ? ? ? ? ? 8.409 ? ? ? ? 0.240 ? ? 3 1 0.981 ?
3.210 10.810 ? 9.000 ? ? ? ? 54 96.400 ? ? ? ? 0.148 ? ? ? ? ? ? ? ? 7.444 ? ? ? ? 0.159 ? ? 4 1 0.993 ?
#
_refine.aniso_B[1][1] -0.9600
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][2] 1.3000
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] -0.3400
_refine.B_iso_max 20.740
_refine.B_iso_mean 8.9670
_refine.B_iso_min 7.900
_refine.correlation_coeff_Fo_to_Fc 0.9890
_refine.correlation_coeff_Fo_to_Fc_free 0.9880
_refine.details
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6G9G
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.6000
_refine.ls_d_res_low 10.8100
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 349
_refine.ls_number_reflns_R_free 39
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 97.7300
_refine.ls_percent_reflns_R_free 10.1000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1079
_refine.ls_R_factor_R_free 0.1351
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1043
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.0800
_refine.pdbx_overall_ESU_R_Free 0.0770
_refine.pdbx_solvent_vdw_probe_radii 1.2000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 1.8590
_refine.overall_SU_ML 0.0590
_refine.overall_SU_R_Cruickshank_DPI 0.0803
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.d_res_high 1.6000
_refine_hist.d_res_low 10.8100
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 40
_refine_hist.pdbx_number_residues_total 6
_refine_hist.pdbx_B_iso_mean_solvent 20.74
_refine_hist.pdbx_number_atoms_protein 39
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.016 0.020 38 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.053 0.020 29 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 1.338 1.947 51 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 0.990 3.000 69 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 4.272 5.000 5 ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? 25.562 30.000 1 ? r_dihedral_angle_2_deg ? ?
'X-RAY DIFFRACTION' ? 5.767 15.000 5 ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? 0.087 0.200 7 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.005 0.020 43 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.001 0.020 5 ? r_gen_planes_other ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 1.6030
_refine_ls_shell.d_res_low 1.7870
_refine_ls_shell.number_reflns_all 107
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 11
_refine_ls_shell.number_reflns_R_work 96
_refine_ls_shell.percent_reflns_obs 100.0000
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.2350
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.2290
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 6G9G
_struct.title
'Crystal Structure of the TASNSS segment from the R4-R5 loop of the E. coli Biofilm-associated CsgA Curli protein'
_struct.pdbx_model_details Curli
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6G9G
_struct_keywords.text 'Bacterial fibril from E. coli, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code CSGA_ECOLI
_struct_ref.pdbx_db_accession P28307
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code TASNSS
_struct_ref.pdbx_align_begin 129
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 6G9G
_struct_ref_seq.pdbx_strand_id B
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P28307
_struct_ref_seq.db_align_beg 129
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 134
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 0 ?
1 MORE 0 ?
1 'SSA (A^2)' 840 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support microscopy
_pdbx_struct_assembly_auth_evidence.details 'Fibrils are observed by EM'
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_phasing_MR.entry_id 6G9G
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 1.600
_pdbx_phasing_MR.d_res_low_rotation 10.810
_pdbx_phasing_MR.d_res_high_translation 1.600
_pdbx_phasing_MR.d_res_low_translation 10.810
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ASN N N N N 14
ASN CA C N S 15
ASN C C N N 16
ASN O O N N 17
ASN CB C N N 18
ASN CG C N N 19
ASN OD1 O N N 20
ASN ND2 N N N 21
ASN OXT O N N 22
ASN H H N N 23
ASN H2 H N N 24
ASN HA H N N 25
ASN HB2 H N N 26
ASN HB3 H N N 27
ASN HD21 H N N 28
ASN HD22 H N N 29
ASN HXT H N N 30
HOH O O N N 31
HOH H1 H N N 32
HOH H2 H N N 33
SER N N N N 34
SER CA C N S 35
SER C C N N 36
SER O O N N 37
SER CB C N N 38
SER OG O N N 39
SER OXT O N N 40
SER H H N N 41
SER H2 H N N 42
SER HA H N N 43
SER HB2 H N N 44
SER HB3 H N N 45
SER HG H N N 46
SER HXT H N N 47
THR N N N N 48
THR CA C N S 49
THR C C N N 50
THR O O N N 51
THR CB C N R 52
THR OG1 O N N 53
THR CG2 C N N 54
THR OXT O N N 55
THR H H N N 56
THR H2 H N N 57
THR HA H N N 58
THR HB H N N 59
THR HG1 H N N 60
THR HG21 H N N 61
THR HG22 H N N 62
THR HG23 H N N 63
THR HXT H N N 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ASN N CA sing N N 13
ASN N H sing N N 14
ASN N H2 sing N N 15
ASN CA C sing N N 16
ASN CA CB sing N N 17
ASN CA HA sing N N 18
ASN C O doub N N 19
ASN C OXT sing N N 20
ASN CB CG sing N N 21
ASN CB HB2 sing N N 22
ASN CB HB3 sing N N 23
ASN CG OD1 doub N N 24
ASN CG ND2 sing N N 25
ASN ND2 HD21 sing N N 26
ASN ND2 HD22 sing N N 27
ASN OXT HXT sing N N 28
HOH O H1 sing N N 29
HOH O H2 sing N N 30
SER N CA sing N N 31
SER N H sing N N 32
SER N H2 sing N N 33
SER CA C sing N N 34
SER CA CB sing N N 35
SER CA HA sing N N 36
SER C O doub N N 37
SER C OXT sing N N 38
SER CB OG sing N N 39
SER CB HB2 sing N N 40
SER CB HB3 sing N N 41
SER OG HG sing N N 42
SER OXT HXT sing N N 43
THR N CA sing N N 44
THR N H sing N N 45
THR N H2 sing N N 46
THR CA C sing N N 47
THR CA CB sing N N 48
THR CA HA sing N N 49
THR C O doub N N 50
THR C OXT sing N N 51
THR CB OG1 sing N N 52
THR CB CG2 sing N N 53
THR CB HB sing N N 54
THR OG1 HG1 sing N N 55
THR CG2 HG21 sing N N 56
THR CG2 HG22 sing N N 57
THR CG2 HG23 sing N N 58
THR OXT HXT sing N N 59
#
_atom_sites.entry_id 6G9G
_atom_sites.fract_transf_matrix[1][1] 0.107296
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.079681
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.046970
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . THR A 1 1 ? 2.325 1.455 -9.383 1.00 9.20 ? 1 THR B N 1
ATOM 2 C CA . THR A 1 1 ? 1.335 1.614 -8.296 1.00 9.21 ? 1 THR B CA 1
ATOM 3 C C . THR A 1 1 ? 2.012 2.345 -7.148 1.00 8.69 ? 1 THR B C 1
ATOM 4 O O . THR A 1 1 ? 3.168 2.728 -7.261 1.00 9.26 ? 1 THR B O 1
ATOM 5 C CB . THR A 1 1 ? 0.827 0.242 -7.849 1.00 9.19 ? 1 THR B CB 1
ATOM 6 O OG1 . THR A 1 1 ? 1.926 -0.530 -7.398 1.00 9.24 ? 1 THR B OG1 1
ATOM 7 C CG2 . THR A 1 1 ? 0.161 -0.480 -8.996 1.00 9.47 ? 1 THR B CG2 1
ATOM 8 N N . ALA A 1 2 ? 1.300 2.558 -6.064 1.00 8.28 ? 2 ALA B N 1
ATOM 9 C CA . ALA A 1 2 ? 1.886 3.218 -4.913 1.00 8.25 ? 2 ALA B CA 1
ATOM 10 C C . ALA A 1 2 ? 1.146 2.819 -3.682 1.00 8.37 ? 2 ALA B C 1
ATOM 11 O O . ALA A 1 2 ? -0.035 2.528 -3.728 1.00 8.04 ? 2 ALA B O 1
ATOM 12 C CB . ALA A 1 2 ? 1.826 4.718 -5.087 1.00 8.48 ? 2 ALA B CB 1
ATOM 13 N N . SER A 1 3 ? 1.854 2.790 -2.569 1.00 8.22 ? 3 SER B N 1
ATOM 14 C CA . SER A 1 3 ? 1.229 2.435 -1.324 1.00 8.44 ? 3 SER B CA 1
ATOM 15 C C . SER A 1 3 ? 1.995 3.019 -0.174 1.00 8.07 ? 3 SER B C 1
ATOM 16 O O . SER A 1 3 ? 3.161 3.367 -0.292 1.00 7.90 ? 3 SER B O 1
ATOM 17 C CB . SER A 1 3 ? 1.122 0.910 -1.203 1.00 8.87 ? 3 SER B CB 1
ATOM 18 O OG . SER A 1 3 ? 2.378 0.279 -1.003 1.00 9.16 ? 3 SER B OG 1
ATOM 19 N N . ASN A 1 4 ? 1.304 3.155 0.939 1.00 8.27 ? 4 ASN B N 1
ATOM 20 C CA . ASN A 1 4 ? 1.945 3.559 2.143 1.00 8.59 ? 4 ASN B CA 1
ATOM 21 C C . ASN A 1 4 ? 1.190 3.059 3.352 1.00 8.90 ? 4 ASN B C 1
ATOM 22 O O . ASN A 1 4 ? 0.082 2.526 3.250 1.00 8.74 ? 4 ASN B O 1
ATOM 23 C CB . ASN A 1 4 ? 2.150 5.089 2.179 1.00 9.09 ? 4 ASN B CB 1
ATOM 24 C CG . ASN A 1 4 ? 0.852 5.881 2.086 1.00 9.48 ? 4 ASN B CG 1
ATOM 25 O OD1 . ASN A 1 4 ? -0.220 5.397 2.451 1.00 10.42 ? 4 ASN B OD1 1
ATOM 26 N ND2 . ASN A 1 4 ? 0.946 7.113 1.593 1.00 9.56 ? 4 ASN B ND2 1
ATOM 27 N N . SER A 1 5 ? 1.833 3.225 4.481 1.00 9.20 ? 5 SER B N 1
ATOM 28 C CA . SER A 1 5 ? 1.222 2.915 5.727 1.00 9.94 ? 5 SER B CA 1
ATOM 29 C C . SER A 1 5 ? 1.892 3.723 6.793 1.00 10.25 ? 5 SER B C 1
ATOM 30 O O . SER A 1 5 ? 3.047 4.147 6.645 1.00 9.63 ? 5 SER B O 1
ATOM 31 C CB . SER A 1 5 ? 1.351 1.435 6.021 1.00 10.82 ? 5 SER B CB 1
ATOM 32 O OG . SER A 1 5 ? 2.684 1.006 5.936 1.00 12.04 ? 5 SER B OG 1
ATOM 33 N N . SER A 1 6 ? 1.171 3.907 7.881 1.00 10.73 ? 6 SER B N 1
ATOM 34 C CA . SER A 1 6 ? 1.684 4.604 9.051 1.00 11.98 ? 6 SER B CA 1
ATOM 35 C C . SER A 1 6 ? 0.986 4.048 10.301 1.00 13.14 ? 6 SER B C 1
ATOM 36 O O . SER A 1 6 ? 0.062 3.213 10.148 1.00 14.49 ? 6 SER B O 1
ATOM 37 C CB . SER A 1 6 ? 1.392 6.093 8.902 1.00 12.04 ? 6 SER B CB 1
ATOM 38 O OG . SER A 1 6 ? 0.013 6.316 8.730 1.00 11.79 ? 6 SER B OG 1
ATOM 39 O OXT . SER A 1 6 ? 1.286 4.477 11.436 1.00 13.00 ? 6 SER B OXT 1
HETATM 40 O O . HOH B 2 . ? -0.695 4.470 13.062 1.00 20.74 ? 101 HOH B O 1
#