HEADER PROTEIN FIBRIL 15-AUG-18 6EEX
TITLE L-GSTSTA FROM DEGENERATE OCTAMERIC REPEATS IN INAZ, RESIDUES 707-712
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: L-GSTSTA FROM ICE NUCLEACTION PROTEIN, INAZ;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE;
SOURCE 4 ORGANISM_TAXID: 317;
SOURCE 5 OTHER_DETAILS: SYNTHETIC PEPTIDE L-GSTSTA CORRESPONDING TO SEGMENT
SOURCE 6 707-712 OF INAZ
KEYWDS AMYLOID, RACEMIC, ICE NUCLEATION, MICROED, INAZ, PSEUDOMONAS
KEYWDS 2 SYRINGAE, PROTEIN FIBRIL
EXPDTA X-RAY DIFFRACTION
AUTHOR C.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO,D.CASCIO,T.GONEN,
AUTHOR 2 M.R.SAWAYA,J.A.RODRIGUEZ
REVDAT 3 13-MAR-24 6EEX 1 REMARK
REVDAT 2 04-DEC-19 6EEX 1 REMARK
REVDAT 1 03-APR-19 6EEX 0
JRNL AUTH C.T.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO,
JRNL AUTH 2 D.CASCIO,T.GONEN,M.R.SAWAYA,J.A.RODRIGUEZ
JRNL TITL HOMOCHIRAL AND RACEMIC MICROED STRUCTURES OF A PEPTIDE
JRNL TITL 2 REPEAT FROM THE ICE-NUCLEATION PROTEIN INAZ.
JRNL REF IUCRJ V. 6 197 2019
JRNL REFN ESSN 2052-2525
JRNL PMID 30867917
JRNL DOI 10.1107/S2052252518017621
REMARK 2
REMARK 2 RESOLUTION. 1.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.12_2829
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.40
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7
REMARK 3 NUMBER OF REFLECTIONS : 1075
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.062
REMARK 3 R VALUE (WORKING SET) : 0.061
REMARK 3 FREE R VALUE : 0.069
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950
REMARK 3 FREE R VALUE TEST SET COUNT : 107
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 1.1501 - 1.1001 0.74 968 11 0.0721 0.0795
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 5.000
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 3.40
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 2.07
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 35
REMARK 3 ANGLE : 1.547 47
REMARK 3 CHIRALITY : 0.072 7
REMARK 3 PLANARITY : 0.006 6
REMARK 3 DIHEDRAL : 9.260 10
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6EEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-18.
REMARK 100 THE DEPOSITION ID IS D_1000236185.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-DEC-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 9.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-E
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1093
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100
REMARK 200 RESOLUTION RANGE LOW (A) : 11.400
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7
REMARK 200 DATA REDUNDANCY : 6.476
REMARK 200 R MERGE (I) : 0.12500
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 10.4100
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.15
REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5
REMARK 200 DATA REDUNDANCY IN SHELL : 6.43
REMARK 200 R MERGE FOR SHELL (I) : 0.21900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 7.340
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING
REMARK 200 SOFTWARE USED: SHELXD
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): NULL
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH 9.5, 10% (W/V) OF PEG
REMARK 280 3000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 4.60500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 11.40000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 5.99000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 11.40000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 4.60500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 5.99000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 6EEX A 707 712 PDB 6EEX 6EEX 707 712
SEQRES 1 A 6 GLY SER THR SER THR ALA
FORMUL 2 HOH *(H2 O)
CRYST1 9.210 11.980 22.800 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.108578 0.000000 0.000000 0.00000
SCALE2 0.000000 0.083472 0.000000 0.00000
SCALE3 0.000000 0.000000 0.043860 0.00000
ATOM 1 N GLY A 707 3.101 9.984 20.822 1.00 1.81 N
ANISOU 1 N GLY A 707 278 214 197 79 -10 -102 N
ATOM 2 CA GLY A 707 3.567 9.168 19.706 1.00 1.63 C
ANISOU 2 CA GLY A 707 198 214 209 33 22 -61 C
ATOM 3 C GLY A 707 2.939 9.670 18.422 1.00 1.30 C
ANISOU 3 C GLY A 707 126 162 207 10 56 -54 C
ATOM 4 O GLY A 707 1.823 10.185 18.428 1.00 1.57 O
ANISOU 4 O GLY A 707 157 228 211 28 84 -21 O
ATOM 5 HA2 GLY A 707 4.532 9.226 19.631 1.00 1.96 H
ATOM 6 HA3 GLY A 707 3.314 8.242 19.842 1.00 1.96 H
ATOM 7 N SER A 708 3.655 9.496 17.315 1.00 1.36 N
ANISOU 7 N SER A 708 82 230 206 40 11 -49 N
ATOM 8 CA SER A 708 3.093 9.813 16.013 1.00 1.62 C
ANISOU 8 CA SER A 708 141 248 229 10 -32 -54 C
ATOM 9 C SER A 708 3.729 8.904 14.977 1.00 1.64 C
ANISOU 9 C SER A 708 106 295 222 -20 -31 -4 C
ATOM 10 O SER A 708 4.911 8.562 15.075 1.00 1.71 O
ANISOU 10 O SER A 708 107 343 198 -10 -3 -21 O
ATOM 11 CB SER A 708 3.323 11.282 15.633 1.00 2.26 C
ANISOU 11 CB SER A 708 313 281 264 48 10 -52 C
ATOM 12 OG SER A 708 4.699 11.612 15.499 1.00 2.43 O
ANISOU 12 OG SER A 708 333 275 314 6 61 -33 O
ATOM 13 H SER A 708 4.461 9.198 17.293 1.00 1.64 H
ATOM 14 HA SER A 708 2.138 9.645 16.024 1.00 1.95 H
ATOM 15 HB2 SER A 708 2.881 11.455 14.787 1.00 2.71 H
ATOM 16 HB3 SER A 708 2.937 11.844 16.323 1.00 2.71 H
ATOM 17 HG SER A 708 5.051 11.139 14.900 1.00 2.91 H
ATOM 18 N THR A 709 2.940 8.552 13.957 1.00 1.38 N
ANISOU 18 N THR A 709 69 250 205 9 -30 3 N
ATOM 19 CA THR A 709 3.440 7.829 12.792 1.00 1.39 C
ANISOU 19 CA THR A 709 125 214 190 19 17 10 C
ATOM 20 C THR A 709 2.707 8.328 11.560 1.00 1.01 C
ANISOU 20 C THR A 709 59 147 179 5 22 -44 C
ATOM 21 O THR A 709 1.471 8.314 11.532 1.00 1.33 O
ANISOU 21 O THR A 709 87 238 179 34 37 -11 O
ATOM 22 CB THR A 709 3.201 6.320 12.890 1.00 1.71 C
ANISOU 22 CB THR A 709 237 173 239 -25 10 47 C
ATOM 23 OG1 THR A 709 3.906 5.783 14.005 1.00 1.90 O
ANISOU 23 OG1 THR A 709 237 169 315 27 34 76 O
ATOM 24 CG2 THR A 709 3.699 5.623 11.635 1.00 1.84 C
ANISOU 24 CG2 THR A 709 229 223 247 11 10 16 C
ATOM 25 H THR A 709 2.098 8.725 13.920 1.00 1.66 H
ATOM 26 HA THR A 709 4.389 7.992 12.683 1.00 1.67 H
ATOM 27 HB THR A 709 2.252 6.145 12.987 1.00 2.05 H
ATOM 28 HG1 THR A 709 3.774 4.955 14.057 1.00 2.28 H
ATOM 29 HG21 THR A 709 3.544 4.668 11.704 1.00 2.21 H
ATOM 30 HG22 THR A 709 3.229 5.964 10.858 1.00 2.21 H
ATOM 31 HG23 THR A 709 4.649 5.782 11.524 1.00 2.21 H
ATOM 32 N SER A 710 3.467 8.711 10.535 1.00 1.45 N
ANISOU 32 N SER A 710 118 233 201 -41 2 -53 N
ATOM 33 CA SER A 710 2.894 9.166 9.274 1.00 1.48 C
ANISOU 33 CA SER A 710 166 185 211 6 -20 3 C
ATOM 34 C SER A 710 3.638 8.536 8.108 1.00 1.53 C
ANISOU 34 C SER A 710 195 198 190 22 -36 28 C
ATOM 35 O SER A 710 4.849 8.296 8.176 1.00 1.77 O
ANISOU 35 O SER A 710 228 280 165 39 -29 -13 O
ATOM 36 CB SER A 710 3.000 10.682 9.146 1.00 2.30 C
ANISOU 36 CB SER A 710 352 224 297 21 25 -8 C
ATOM 37 OG SER A 710 2.392 11.292 10.277 1.00 2.92 O
ANISOU 37 OG SER A 710 491 242 374 19 15 10 O
ATOM 38 H SER A 710 4.327 8.716 10.547 1.00 1.74 H
ATOM 39 HA SER A 710 1.959 8.911 9.225 1.00 1.77 H
ATOM 40 HB2 SER A 710 3.936 10.936 9.109 1.00 2.76 H
ATOM 41 HB3 SER A 710 2.542 10.969 8.341 1.00 2.76 H
ATOM 42 HG SER A 710 2.445 12.128 10.216 1.00 3.50 H
ATOM 43 N THR A 711 2.893 8.270 7.031 1.00 1.48 N
ANISOU 43 N THR A 711 116 258 189 18 -35 -14 N
ATOM 44 CA THR A 711 3.475 7.761 5.794 1.00 1.56 C
ANISOU 44 CA THR A 711 114 267 212 -39 -1 -20 C
ATOM 45 C THR A 711 2.884 8.478 4.586 1.00 1.59 C
ANISOU 45 C THR A 711 159 240 205 -83 -4 -57 C
ATOM 46 O THR A 711 1.791 9.045 4.633 1.00 1.70 O
ANISOU 46 O THR A 711 245 213 187 -8 10 -29 O
ATOM 47 CB THR A 711 3.257 6.244 5.572 1.00 2.03 C
ANISOU 47 CB THR A 711 227 261 281 65 -38 11 C
ATOM 48 OG1 THR A 711 1.891 5.966 5.213 1.00 2.01 O
ANISOU 48 OG1 THR A 711 270 177 317 -69 -53 9 O
ATOM 49 CG2 THR A 711 3.674 5.440 6.772 1.00 2.23 C
ANISOU 49 CG2 THR A 711 310 236 300 41 -60 14 C
ATOM 50 H THR A 711 2.040 8.378 6.995 1.00 1.78 H
ATOM 51 HA THR A 711 4.430 7.927 5.804 1.00 1.87 H
ATOM 52 HB THR A 711 3.822 5.966 4.835 1.00 2.43 H
ATOM 53 HG1 THR A 711 1.788 5.141 5.096 1.00 2.41 H
ATOM 54 HG21 THR A 711 3.527 4.496 6.606 1.00 2.67 H
ATOM 55 HG22 THR A 711 4.615 5.585 6.957 1.00 2.67 H
ATOM 56 HG23 THR A 711 3.156 5.708 7.547 1.00 2.67 H
ATOM 57 N ALA A 712 3.628 8.403 3.484 1.00 1.53 N
ANISOU 57 N ALA A 712 131 250 199 -31 7 26 N
ATOM 58 CA ALA A 712 3.128 8.735 2.152 1.00 1.60 C
ANISOU 58 CA ALA A 712 194 212 200 39 -13 35 C
ATOM 59 C ALA A 712 4.015 8.082 1.093 1.00 1.78 C
ANISOU 59 C ALA A 712 279 190 206 -64 -64 32 C
ATOM 60 O ALA A 712 3.673 8.180 -0.103 1.00 2.16 O
ANISOU 60 O ALA A 712 393 251 178 -39 -49 1 O
ATOM 61 CB ALA A 712 3.055 10.230 1.942 1.00 2.57 C
ANISOU 61 CB ALA A 712 473 288 214 36 31 32 C
ATOM 62 OXT ALA A 712 5.015 7.447 1.468 1.00 2.03 O
ANISOU 62 OXT ALA A 712 273 281 216 2 -46 -4 O
ATOM 63 H ALA A 712 4.452 8.155 3.484 1.00 1.83 H
ATOM 64 HA ALA A 712 2.233 8.376 2.054 1.00 1.92 H
ATOM 65 HB1 ALA A 712 2.720 10.408 1.050 1.00 3.08 H
ATOM 66 HB2 ALA A 712 2.457 10.612 2.603 1.00 3.08 H
ATOM 67 HB3 ALA A 712 3.944 10.607 2.044 1.00 3.08 H
TER 68 ALA A 712
HETATM 69 O HOH A 801 4.971 11.782 12.799 1.00 4.78 O
ANISOU 69 O HOH A 801 872 434 510 155 362 94 O
MASTER 189 0 0 0 0 0 0 6 37 1 0 1
END