data_6C88
#
_entry.id 6C88
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6C88 pdb_00006c88 10.2210/pdb6c88/pdb
WWPDB D_1000232265 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2018-04-18
2 'Structure model' 1 1 2018-07-18
3 'Structure model' 1 2 2018-08-01
4 'Structure model' 1 3 2024-03-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' citation
3 3 'Structure model' citation_author
4 3 'Structure model' pdbx_related_exp_data_set
5 4 'Structure model' chem_comp_atom
6 4 'Structure model' chem_comp_bond
7 4 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.journal_volume'
2 2 'Structure model' '_citation.page_first'
3 2 'Structure model' '_citation.page_last'
4 2 'Structure model' '_citation.title'
5 4 'Structure model' '_database_2.pdbx_DOI'
6 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6C88
_pdbx_database_status.recvd_initial_deposition_date 2018-01-24
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
PDB . 6C3F unspecified
PDB . 6C3G unspecified
PDB . 6C3S unspecified
PDB . 6C3T unspecified
PDB . 6C4O unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Saelices, L.' 1 0000-0002-1904-2150
'Sawaya, M.R.' 2 0000-0003-0874-9043
'Eisenberg, D.S.' 3 0000-0003-2432-5419
#
loop_
_citation.abstract
_citation.abstract_id_CAS
_citation.book_id_ISBN
_citation.book_publisher
_citation.book_publisher_city
_citation.book_title
_citation.coordinate_linkage
_citation.country
_citation.database_id_Medline
_citation.details
_citation.id
_citation.journal_abbrev
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_full
_citation.journal_issue
_citation.journal_volume
_citation.language
_citation.page_first
_citation.page_last
_citation.title
_citation.year
_citation.database_id_CSD
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.unpublished_flag
? ? ? ? ? ? ? US ? ? primary 'Protein Sci.' PRCIEI 0795 1469-896X ? ? 27 ? 1295 1303
'Crystal structures of amyloidogenic segments of human transthyretin.' 2018 ? 10.1002/pro.3420 29626847 ?
? ? ? ? ? ? ? US ? ? 1 'J. Biol. Chem.' JBCHA3 0071 1083-351X ? ? 290 ? 28932 28943
'Uncovering the Mechanism of Aggregation of Human Transthyretin.' 2015 ? 10.1074/jbc.M115.659912 26459562 ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Saelices, L.' 1 ?
primary 'Sievers, S.A.' 2 ?
primary 'Sawaya, M.R.' 3 ?
primary 'Eisenberg, D.S.' 4 ?
1 'Saelices, L.' 5 ?
1 'Johnson, L.M.' 6 ?
1 'Liang, W.Y.' 7 ?
1 'Sawaya, M.R.' 8 ?
1 'Cascio, D.' 9 ?
1 'Ruchala, P.' 10 ?
1 'Whitelegge, J.' 11 ?
1 'Jiang, L.' 12 ?
1 'Riek, R.' 13 ?
1 'Eisenberg, D.S.' 14 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn VAL-ALA-VAL-HIS-VAL-PHE 671.806 2 ? ? ? ?
2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ?
3 water nat water 18.015 4 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code VAVHVF
_entity_poly.pdbx_seq_one_letter_code_can VAVHVF
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 GLYCEROL GOL
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 VAL n
1 2 ALA n
1 3 VAL n
1 4 HIS n
1 5 VAL n
1 6 PHE n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 VAL 1 1 1 VAL VAL A . n
A 1 2 ALA 2 2 2 ALA ALA A . n
A 1 3 VAL 3 3 3 VAL VAL A . n
A 1 4 HIS 4 4 4 HIS HIS A . n
A 1 5 VAL 5 5 5 VAL VAL A . n
A 1 6 PHE 6 6 6 PHE PHE A . n
B 1 1 VAL 1 1 1 VAL VAL B . n
B 1 2 ALA 2 2 2 ALA ALA B . n
B 1 3 VAL 3 3 3 VAL VAL B . n
B 1 4 HIS 4 4 4 HIS HIS B . n
B 1 5 VAL 5 5 5 VAL VAL B . n
B 1 6 PHE 6 6 6 PHE PHE B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL 1 101 1 GOL GOL B .
D 3 HOH 1 101 1 HOH HOH A .
E 3 HOH 1 201 5 HOH HOH B .
E 3 HOH 2 202 4 HOH HOH B .
E 3 HOH 3 203 2 HOH HOH B .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 1
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 2
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 6C88
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 11.529
_cell.length_a_esd ?
_cell.length_b 20.360
_cell.length_b_esd ?
_cell.length_c 36.729
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6C88
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6C88
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 1.6
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 23.32
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;10mg/ml peptide solution. Reservoir contained 0.2 M Magnesium chloride hexahydrate, 0.1 M HEPES sodium pH 7.5, 30% v/v 2-Propanol. Crystals were soaked in 25% glycerol prior to diffraction
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2014-02-27
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9792
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate 4.010
_reflns.entry_id 6C88
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.850
_reflns.d_resolution_low 100.000
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 744
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 84.300
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 3.800
_reflns.pdbx_Rmerge_I_obs 0.280
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 3.100
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 1.107
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 2837
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.850 1.920 ? ? ? ? ? ? 71 78.900 ? ? ? ? 0.421 ? ? ? ? ? ? ? ? 2.600 ? 1.093 ? ? ? ? ? 1 1 ? ?
1.920 1.990 ? ? ? ? ? ? 57 78.100 ? ? ? ? 0.572 ? ? ? ? ? ? ? ? 4.300 ? 1.238 ? ? ? ? ? 2 1 ? ?
1.990 2.080 ? ? ? ? ? ? 66 78.600 ? ? ? ? 0.507 ? ? ? ? ? ? ? ? 4.300 ? 1.143 ? ? ? ? ? 3 1 ? ?
2.080 2.190 ? ? ? ? ? ? 67 80.700 ? ? ? ? 0.406 ? ? ? ? ? ? ? ? 3.800 ? 0.934 ? ? ? ? ? 4 1 ? ?
2.190 2.330 ? ? ? ? ? ? 67 72.000 ? ? ? ? 0.411 ? ? ? ? ? ? ? ? 4.000 ? 0.949 ? ? ? ? ? 5 1 ? ?
2.330 2.510 ? ? ? ? ? ? 65 83.300 ? ? ? ? 0.396 ? ? ? ? ? ? ? ? 4.000 ? 0.997 ? ? ? ? ? 6 1 ? ?
2.510 2.760 ? ? ? ? ? ? 81 95.300 ? ? ? ? 0.399 ? ? ? ? ? ? ? ? 4.100 ? 1.124 ? ? ? ? ? 7 1 ? ?
2.760 3.160 ? ? ? ? ? ? 83 92.200 ? ? ? ? 0.382 ? ? ? ? ? ? ? ? 4.000 ? 1.185 ? ? ? ? ? 8 1 ? ?
3.160 3.990 ? ? ? ? ? ? 92 91.100 ? ? ? ? 0.161 ? ? ? ? ? ? ? ? 3.700 ? 1.061 ? ? ? ? ? 9 1 ? ?
3.990 100.000 ? ? ? ? ? ? 95 89.600 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 3.500 ? 1.286 ? ? ? ? ? 10 1 ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 23.470
_refine.B_iso_mean 3.7137
_refine.B_iso_min 0.340
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6C88
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.8510
_refine.ls_d_res_low 18.3650
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 728
_refine.ls_number_reflns_R_free 57
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 84.4500
_refine.ls_percent_reflns_R_free 7.8300
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1723
_refine.ls_R_factor_R_free 0.1785
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1706
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.370
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 12.0100
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.2200
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.d_res_high 1.8510
_refine_hist.d_res_low 18.3650
_refine_hist.pdbx_number_atoms_ligand 6
_refine_hist.number_atoms_solvent 4
_refine_hist.number_atoms_total 106
_refine_hist.pdbx_number_residues_total 12
_refine_hist.pdbx_B_iso_mean_ligand 15.47
_refine_hist.pdbx_B_iso_mean_solvent 6.71
_refine_hist.pdbx_number_atoms_protein 96
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.009 ? 103 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 0.827 ? 139 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.067 ? 18 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.003 ? 16 ? f_plane_restr ? ?
'X-RAY DIFFRACTION' ? 10.927 ? 52 ? f_dihedral_angle_d ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 1.8506
_refine_ls_shell.d_res_low 1.917
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs 70
_refine_ls_shell.number_reflns_R_free ?
_refine_ls_shell.number_reflns_R_work ?
_refine_ls_shell.percent_reflns_obs 79.55
_refine_ls_shell.percent_reflns_R_free 8
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.4292
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.1898
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 1
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 6C88
_struct.title 'STRUCTURE OF THE AMYLOID FORMING PEPTIDE VAVHVF FROM TRANSTHYRETIN'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6C88
_struct_keywords.text 'amyloid, transthyretin, fibril, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 6C88
_struct_ref.pdbx_db_accession 6C88
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 6C88 A 1 ? 6 ? 6C88 1 ? 6 ? 1 6
2 1 6C88 B 1 ? 6 ? 6C88 1 ? 6 ? 1 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details eicosameric
_pdbx_struct_assembly.oligomeric_count 20
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'scanning transmission electron microscopy'
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -11.5290000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 11.5290000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_355 x-2,y,z 1.0000000000 0.0000000000 0.0000000000 -23.0580000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 23.0580000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 5.7645000000 0.0000000000
-1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
7 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 -5.7645000000 0.0000000000
-1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
8 'crystal symmetry operation' 4_645 x+3/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 17.2935000000 0.0000000000
-1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
9 'crystal symmetry operation' 4_345 x-3/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 -17.2935000000 0.0000000000
-1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
10 'crystal symmetry operation' 4_745 x+5/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 28.8225000000 0.0000000000
-1.0000000000 0.0000000000 -10.1800000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_sheet.id AA1
_struct_sheet.type ?
_struct_sheet.number_strands 2
_struct_sheet.details ?
#
_struct_sheet_order.sheet_id AA1
_struct_sheet_order.range_id_1 1
_struct_sheet_order.range_id_2 2
_struct_sheet_order.offset ?
_struct_sheet_order.sense anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 ALA A 2 ? VAL A 5 ? ALA A 2 VAL A 5
AA1 2 VAL B 3 ? PHE B 6 ? VAL B 3 PHE B 6
#
_pdbx_struct_sheet_hbond.sheet_id AA1
_pdbx_struct_sheet_hbond.range_id_1 1
_pdbx_struct_sheet_hbond.range_id_2 2
_pdbx_struct_sheet_hbond.range_1_label_atom_id N
_pdbx_struct_sheet_hbond.range_1_label_comp_id ALA
_pdbx_struct_sheet_hbond.range_1_label_asym_id A
_pdbx_struct_sheet_hbond.range_1_label_seq_id 2
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_1_auth_atom_id N
_pdbx_struct_sheet_hbond.range_1_auth_comp_id ALA
_pdbx_struct_sheet_hbond.range_1_auth_asym_id A
_pdbx_struct_sheet_hbond.range_1_auth_seq_id 2
_pdbx_struct_sheet_hbond.range_2_label_atom_id O
_pdbx_struct_sheet_hbond.range_2_label_comp_id PHE
_pdbx_struct_sheet_hbond.range_2_label_asym_id B
_pdbx_struct_sheet_hbond.range_2_label_seq_id 6
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code ?
_pdbx_struct_sheet_hbond.range_2_auth_atom_id O
_pdbx_struct_sheet_hbond.range_2_auth_comp_id PHE
_pdbx_struct_sheet_hbond.range_2_auth_asym_id B
_pdbx_struct_sheet_hbond.range_2_auth_seq_id 6
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id B
_struct_site.pdbx_auth_comp_id GOL
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 7
_struct_site.details 'binding site for residue GOL B 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 7 HIS A 4 ? HIS A 4 . ? 1_455 ?
2 AC1 7 VAL A 5 ? VAL A 5 . ? 3_355 ?
3 AC1 7 VAL B 1 ? VAL B 1 . ? 1_555 ?
4 AC1 7 VAL B 1 ? VAL B 1 . ? 3_355 ?
5 AC1 7 VAL B 3 ? VAL B 3 . ? 3_355 ?
6 AC1 7 PHE B 6 ? PHE B 6 . ? 2_355 ?
7 AC1 7 HOH E . ? HOH B 202 . ? 1_555 ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GOL C1 C N N 14
GOL O1 O N N 15
GOL C2 C N N 16
GOL O2 O N N 17
GOL C3 C N N 18
GOL O3 O N N 19
GOL H11 H N N 20
GOL H12 H N N 21
GOL HO1 H N N 22
GOL H2 H N N 23
GOL HO2 H N N 24
GOL H31 H N N 25
GOL H32 H N N 26
GOL HO3 H N N 27
HIS N N N N 28
HIS CA C N S 29
HIS C C N N 30
HIS O O N N 31
HIS CB C N N 32
HIS CG C Y N 33
HIS ND1 N Y N 34
HIS CD2 C Y N 35
HIS CE1 C Y N 36
HIS NE2 N Y N 37
HIS OXT O N N 38
HIS H H N N 39
HIS H2 H N N 40
HIS HA H N N 41
HIS HB2 H N N 42
HIS HB3 H N N 43
HIS HD1 H N N 44
HIS HD2 H N N 45
HIS HE1 H N N 46
HIS HE2 H N N 47
HIS HXT H N N 48
HOH O O N N 49
HOH H1 H N N 50
HOH H2 H N N 51
PHE N N N N 52
PHE CA C N S 53
PHE C C N N 54
PHE O O N N 55
PHE CB C N N 56
PHE CG C Y N 57
PHE CD1 C Y N 58
PHE CD2 C Y N 59
PHE CE1 C Y N 60
PHE CE2 C Y N 61
PHE CZ C Y N 62
PHE OXT O N N 63
PHE H H N N 64
PHE H2 H N N 65
PHE HA H N N 66
PHE HB2 H N N 67
PHE HB3 H N N 68
PHE HD1 H N N 69
PHE HD2 H N N 70
PHE HE1 H N N 71
PHE HE2 H N N 72
PHE HZ H N N 73
PHE HXT H N N 74
VAL N N N N 75
VAL CA C N S 76
VAL C C N N 77
VAL O O N N 78
VAL CB C N N 79
VAL CG1 C N N 80
VAL CG2 C N N 81
VAL OXT O N N 82
VAL H H N N 83
VAL H2 H N N 84
VAL HA H N N 85
VAL HB H N N 86
VAL HG11 H N N 87
VAL HG12 H N N 88
VAL HG13 H N N 89
VAL HG21 H N N 90
VAL HG22 H N N 91
VAL HG23 H N N 92
VAL HXT H N N 93
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GOL C1 O1 sing N N 13
GOL C1 C2 sing N N 14
GOL C1 H11 sing N N 15
GOL C1 H12 sing N N 16
GOL O1 HO1 sing N N 17
GOL C2 O2 sing N N 18
GOL C2 C3 sing N N 19
GOL C2 H2 sing N N 20
GOL O2 HO2 sing N N 21
GOL C3 O3 sing N N 22
GOL C3 H31 sing N N 23
GOL C3 H32 sing N N 24
GOL O3 HO3 sing N N 25
HIS N CA sing N N 26
HIS N H sing N N 27
HIS N H2 sing N N 28
HIS CA C sing N N 29
HIS CA CB sing N N 30
HIS CA HA sing N N 31
HIS C O doub N N 32
HIS C OXT sing N N 33
HIS CB CG sing N N 34
HIS CB HB2 sing N N 35
HIS CB HB3 sing N N 36
HIS CG ND1 sing Y N 37
HIS CG CD2 doub Y N 38
HIS ND1 CE1 doub Y N 39
HIS ND1 HD1 sing N N 40
HIS CD2 NE2 sing Y N 41
HIS CD2 HD2 sing N N 42
HIS CE1 NE2 sing Y N 43
HIS CE1 HE1 sing N N 44
HIS NE2 HE2 sing N N 45
HIS OXT HXT sing N N 46
HOH O H1 sing N N 47
HOH O H2 sing N N 48
PHE N CA sing N N 49
PHE N H sing N N 50
PHE N H2 sing N N 51
PHE CA C sing N N 52
PHE CA CB sing N N 53
PHE CA HA sing N N 54
PHE C O doub N N 55
PHE C OXT sing N N 56
PHE CB CG sing N N 57
PHE CB HB2 sing N N 58
PHE CB HB3 sing N N 59
PHE CG CD1 doub Y N 60
PHE CG CD2 sing Y N 61
PHE CD1 CE1 sing Y N 62
PHE CD1 HD1 sing N N 63
PHE CD2 CE2 doub Y N 64
PHE CD2 HD2 sing N N 65
PHE CE1 CZ doub Y N 66
PHE CE1 HE1 sing N N 67
PHE CE2 CZ sing Y N 68
PHE CE2 HE2 sing N N 69
PHE CZ HZ sing N N 70
PHE OXT HXT sing N N 71
VAL N CA sing N N 72
VAL N H sing N N 73
VAL N H2 sing N N 74
VAL CA C sing N N 75
VAL CA CB sing N N 76
VAL CA HA sing N N 77
VAL C O doub N N 78
VAL C OXT sing N N 79
VAL CB CG1 sing N N 80
VAL CB CG2 sing N N 81
VAL CB HB sing N N 82
VAL CG1 HG11 sing N N 83
VAL CG1 HG12 sing N N 84
VAL CG1 HG13 sing N N 85
VAL CG2 HG21 sing N N 86
VAL CG2 HG22 sing N N 87
VAL CG2 HG23 sing N N 88
VAL OXT HXT sing N N 89
#
_pdbx_audit_support.funding_organization 'Seventh Framework Programme for Research'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number 298559
_pdbx_audit_support.ordinal 1
#
_atom_sites.entry_id 6C88
_atom_sites.fract_transf_matrix[1][1] 0.086738
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.049116
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.027226
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . VAL A 1 1 ? 2.755 1.097 -3.675 1.00 3.85 ? 1 VAL A N 1
ATOM 2 C CA . VAL A 1 1 ? 1.548 0.441 -3.186 1.00 2.53 ? 1 VAL A CA 1
ATOM 3 C C . VAL A 1 1 ? 1.493 0.476 -1.657 1.00 3.92 ? 1 VAL A C 1
ATOM 4 O O . VAL A 1 1 ? 2.493 0.233 -0.978 1.00 2.27 ? 1 VAL A O 1
ATOM 5 C CB . VAL A 1 1 ? 1.448 -1.022 -3.679 1.00 4.66 ? 1 VAL A CB 1
ATOM 6 C CG1 . VAL A 1 1 ? 2.640 -1.838 -3.218 1.00 6.26 ? 1 VAL A CG1 1
ATOM 7 C CG2 . VAL A 1 1 ? 0.139 -1.660 -3.220 1.00 6.52 ? 1 VAL A CG2 1
ATOM 8 N N . ALA A 1 2 ? 0.321 0.814 -1.131 1.00 1.61 ? 2 ALA A N 1
ATOM 9 C CA . ALA A 1 2 ? 0.101 0.873 0.299 1.00 0.74 ? 2 ALA A CA 1
ATOM 10 C C . ALA A 1 2 ? -1.094 0.020 0.635 1.00 2.09 ? 2 ALA A C 1
ATOM 11 O O . ALA A 1 2 ? -2.172 0.223 0.080 1.00 1.82 ? 2 ALA A O 1
ATOM 12 C CB . ALA A 1 2 ? -0.120 2.297 0.755 1.00 3.02 ? 2 ALA A CB 1
ATOM 13 N N . VAL A 1 3 ? -0.888 -0.937 1.536 1.00 2.04 ? 3 VAL A N 1
ATOM 14 C CA . VAL A 1 3 ? -1.944 -1.824 2.003 1.00 0.34 ? 3 VAL A CA 1
ATOM 15 C C . VAL A 1 3 ? -2.148 -1.595 3.498 1.00 1.98 ? 3 VAL A C 1
ATOM 16 O O . VAL A 1 3 ? -1.255 -1.865 4.289 1.00 1.61 ? 3 VAL A O 1
ATOM 17 C CB . VAL A 1 3 ? -1.599 -3.298 1.723 1.00 0.75 ? 3 VAL A CB 1
ATOM 18 C CG1 . VAL A 1 3 ? -2.675 -4.228 2.272 1.00 0.71 ? 3 VAL A CG1 1
ATOM 19 C CG2 . VAL A 1 3 ? -1.422 -3.513 0.217 1.00 0.71 ? 3 VAL A CG2 1
ATOM 20 N N . HIS A 1 4 ? -3.313 -1.075 3.870 1.00 1.25 ? 4 HIS A N 1
ATOM 21 C CA . HIS A 1 4 ? -3.614 -0.828 5.274 1.00 2.29 ? 4 HIS A CA 1
ATOM 22 C C . HIS A 1 4 ? -4.742 -1.739 5.757 1.00 2.73 ? 4 HIS A C 1
ATOM 23 O O . HIS A 1 4 ? -5.754 -1.898 5.079 1.00 1.62 ? 4 HIS A O 1
ATOM 24 C CB . HIS A 1 4 ? -4.003 0.635 5.498 1.00 3.72 ? 4 HIS A CB 1
ATOM 25 C CG . HIS A 1 4 ? -2.909 1.609 5.192 1.00 3.57 ? 4 HIS A CG 1
ATOM 26 N ND1 . HIS A 1 4 ? -3.148 2.951 4.997 1.00 2.47 ? 4 HIS A ND1 1
ATOM 27 C CD2 . HIS A 1 4 ? -1.572 1.438 5.049 1.00 2.42 ? 4 HIS A CD2 1
ATOM 28 C CE1 . HIS A 1 4 ? -2.006 3.566 4.740 1.00 5.23 ? 4 HIS A CE1 1
ATOM 29 N NE2 . HIS A 1 4 ? -1.034 2.672 4.777 1.00 1.84 ? 4 HIS A NE2 1
ATOM 30 N N . VAL A 1 5 ? -4.543 -2.341 6.925 1.00 1.09 ? 5 VAL A N 1
ATOM 31 C CA . VAL A 1 5 ? -5.577 -3.111 7.599 1.00 1.60 ? 5 VAL A CA 1
ATOM 32 C C . VAL A 1 5 ? -5.687 -2.596 9.040 1.00 1.54 ? 5 VAL A C 1
ATOM 33 O O . VAL A 1 5 ? -4.738 -2.692 9.820 1.00 1.84 ? 5 VAL A O 1
ATOM 34 C CB . VAL A 1 5 ? -5.273 -4.625 7.593 1.00 1.51 ? 5 VAL A CB 1
ATOM 35 C CG1 . VAL A 1 5 ? -6.366 -5.382 8.309 1.00 2.50 ? 5 VAL A CG1 1
ATOM 36 C CG2 . VAL A 1 5 ? -5.115 -5.144 6.162 1.00 3.81 ? 5 VAL A CG2 1
ATOM 37 N N . PHE A 1 6 ? -6.829 -2.009 9.378 1.00 2.87 ? 6 PHE A N 1
ATOM 38 C CA . PHE A 1 6 ? -7.010 -1.445 10.711 1.00 3.91 ? 6 PHE A CA 1
ATOM 39 C C . PHE A 1 6 ? -8.482 -1.365 11.113 1.00 4.80 ? 6 PHE A C 1
ATOM 40 O O . PHE A 1 6 ? -9.349 -1.900 10.429 1.00 3.09 ? 6 PHE A O 1
ATOM 41 C CB . PHE A 1 6 ? -6.369 -0.059 10.797 1.00 2.45 ? 6 PHE A CB 1
ATOM 42 C CG . PHE A 1 6 ? -6.986 0.955 9.891 1.00 2.53 ? 6 PHE A CG 1
ATOM 43 C CD1 . PHE A 1 6 ? -6.532 1.110 8.590 1.00 4.00 ? 6 PHE A CD1 1
ATOM 44 C CD2 . PHE A 1 6 ? -8.001 1.775 10.343 1.00 2.94 ? 6 PHE A CD2 1
ATOM 45 C CE1 . PHE A 1 6 ? -7.088 2.047 7.757 1.00 3.91 ? 6 PHE A CE1 1
ATOM 46 C CE2 . PHE A 1 6 ? -8.562 2.716 9.516 1.00 2.55 ? 6 PHE A CE2 1
ATOM 47 C CZ . PHE A 1 6 ? -8.106 2.853 8.215 1.00 6.39 ? 6 PHE A CZ 1
ATOM 48 O OXT . PHE A 1 6 ? -8.833 -0.765 12.134 1.00 3.71 ? 6 PHE A OXT 1
ATOM 49 N N . VAL B 1 1 ? -13.748 -1.981 10.941 1.00 3.29 ? 1 VAL B N 1
ATOM 50 C CA . VAL B 1 1 ? -12.581 -2.563 10.295 1.00 1.86 ? 1 VAL B CA 1
ATOM 51 C C . VAL B 1 1 ? -12.475 -2.025 8.876 1.00 4.85 ? 1 VAL B C 1
ATOM 52 O O . VAL B 1 1 ? -13.470 -1.945 8.157 1.00 2.52 ? 1 VAL B O 1
ATOM 53 C CB . VAL B 1 1 ? -12.656 -4.100 10.305 1.00 3.69 ? 1 VAL B CB 1
ATOM 54 C CG1 . VAL B 1 1 ? -11.749 -4.706 9.263 1.00 5.05 ? 1 VAL B CG1 1
ATOM 55 C CG2 . VAL B 1 1 ? -12.307 -4.622 11.694 1.00 4.64 ? 1 VAL B CG2 1
ATOM 56 N N . ALA B 1 2 ? -11.271 -1.621 8.498 1.00 4.08 ? 2 ALA B N 1
ATOM 57 C CA . ALA B 1 2 ? -11.038 -1.015 7.203 1.00 3.14 ? 2 ALA B CA 1
ATOM 58 C C . ALA B 1 2 ? -9.861 -1.672 6.512 1.00 2.46 ? 2 ALA B C 1
ATOM 59 O O . ALA B 1 2 ? -8.825 -1.913 7.139 1.00 1.12 ? 2 ALA B O 1
ATOM 60 C CB . ALA B 1 2 ? -10.793 0.460 7.350 1.00 3.64 ? 2 ALA B CB 1
ATOM 61 N N . VAL B 1 3 ? -10.030 -1.965 5.220 1.00 2.21 ? 3 VAL B N 1
ATOM 62 C CA . VAL B 1 3 ? -8.929 -2.413 4.383 1.00 1.54 ? 3 VAL B CA 1
ATOM 63 C C . VAL B 1 3 ? -8.793 -1.476 3.185 1.00 2.07 ? 3 VAL B C 1
ATOM 64 O O . VAL B 1 3 ? -9.752 -1.241 2.449 1.00 0.80 ? 3 VAL B O 1
ATOM 65 C CB . VAL B 1 3 ? -9.120 -3.865 3.889 1.00 2.59 ? 3 VAL B CB 1
ATOM 66 C CG1 . VAL B 1 3 ? -7.927 -4.307 3.029 1.00 1.99 ? 3 VAL B CG1 1
ATOM 67 C CG2 . VAL B 1 3 ? -9.301 -4.810 5.061 1.00 1.83 ? 3 VAL B CG2 1
ATOM 68 N N . HIS B 1 4 ? -7.592 -0.930 3.019 1.00 1.70 ? 4 HIS B N 1
ATOM 69 C CA . HIS B 1 4 ? -7.287 -0.036 1.918 1.00 0.88 ? 4 HIS B CA 1
ATOM 70 C C . HIS B 1 4 ? -6.164 -0.598 1.077 1.00 1.46 ? 4 HIS B C 1
ATOM 71 O O . HIS B 1 4 ? -5.173 -1.121 1.601 1.00 1.50 ? 4 HIS B O 1
ATOM 72 C CB . HIS B 1 4 ? -6.873 1.340 2.421 1.00 2.40 ? 4 HIS B CB 1
ATOM 73 C CG . HIS B 1 4 ? -7.937 2.057 3.181 1.00 1.91 ? 4 HIS B CG 1
ATOM 74 N ND1 . HIS B 1 4 ? -7.671 3.150 3.973 1.00 3.48 ? 4 HIS B ND1 1
ATOM 75 C CD2 . HIS B 1 4 ? -9.270 1.847 3.264 1.00 0.89 ? 4 HIS B CD2 1
ATOM 76 C CE1 . HIS B 1 4 ? -8.794 3.582 4.516 1.00 2.53 ? 4 HIS B CE1 1
ATOM 77 N NE2 . HIS B 1 4 ? -9.779 2.806 4.107 1.00 2.30 ? 4 HIS B NE2 1
ATOM 78 N N . VAL B 1 5 ? -6.311 -0.467 -0.232 1.00 1.91 ? 5 VAL B N 1
ATOM 79 C CA . VAL B 1 5 ? -5.215 -0.714 -1.147 1.00 1.46 ? 5 VAL B CA 1
ATOM 80 C C . VAL B 1 5 ? -5.157 0.448 -2.140 1.00 2.21 ? 5 VAL B C 1
ATOM 81 O O . VAL B 1 5 ? -6.086 0.648 -2.918 1.00 1.66 ? 5 VAL B O 1
ATOM 82 C CB . VAL B 1 5 ? -5.374 -2.046 -1.911 1.00 1.51 ? 5 VAL B CB 1
ATOM 83 C CG1 . VAL B 1 5 ? -4.232 -2.210 -2.906 1.00 4.36 ? 5 VAL B CG1 1
ATOM 84 C CG2 . VAL B 1 5 ? -5.428 -3.227 -0.945 1.00 2.51 ? 5 VAL B CG2 1
ATOM 85 N N . PHE B 1 6 ? -4.070 1.211 -2.098 1.00 4.01 ? 6 PHE B N 1
ATOM 86 C CA . PHE B 1 6 ? -3.873 2.329 -3.009 1.00 3.25 ? 6 PHE B CA 1
ATOM 87 C C . PHE B 1 6 ? -2.537 2.222 -3.741 1.00 6.17 ? 6 PHE B C 1
ATOM 88 O O . PHE B 1 6 ? -1.551 1.768 -3.149 1.00 3.68 ? 6 PHE B O 1
ATOM 89 C CB . PHE B 1 6 ? -3.938 3.660 -2.246 1.00 3.12 ? 6 PHE B CB 1
ATOM 90 C CG . PHE B 1 6 ? -5.219 3.862 -1.494 1.00 3.83 ? 6 PHE B CG 1
ATOM 91 C CD1 . PHE B 1 6 ? -6.423 3.942 -2.169 1.00 4.26 ? 6 PHE B CD1 1
ATOM 92 C CD2 . PHE B 1 6 ? -5.220 3.987 -0.113 1.00 6.55 ? 6 PHE B CD2 1
ATOM 93 C CE1 . PHE B 1 6 ? -7.616 4.130 -1.481 1.00 5.71 ? 6 PHE B CE1 1
ATOM 94 C CE2 . PHE B 1 6 ? -6.412 4.176 0.582 1.00 5.48 ? 6 PHE B CE2 1
ATOM 95 C CZ . PHE B 1 6 ? -7.612 4.247 -0.111 1.00 5.58 ? 6 PHE B CZ 1
ATOM 96 O OXT . PHE B 1 6 ? -2.415 2.597 -4.923 1.00 2.66 ? 6 PHE B OXT 1
HETATM 97 C C1 . GOL C 2 . ? -12.937 1.145 10.700 1.00 7.85 ? 101 GOL B C1 1
HETATM 98 O O1 . GOL C 2 . ? -13.617 0.280 11.567 1.00 10.08 ? 101 GOL B O1 1
HETATM 99 C C2 . GOL C 2 . ? -13.860 2.320 10.505 1.00 19.69 ? 101 GOL B C2 1
HETATM 100 O O2 . GOL C 2 . ? -13.101 3.493 10.670 1.00 23.47 ? 101 GOL B O2 1
HETATM 101 C C3 . GOL C 2 . ? -14.468 2.223 9.111 1.00 9.90 ? 101 GOL B C3 1
HETATM 102 O O3 . GOL C 2 . ? -13.639 2.863 8.162 1.00 21.85 ? 101 GOL B O3 1
HETATM 103 O O . HOH D 3 . ? -5.284 4.544 4.835 1.00 6.70 ? 101 HOH A O 1
HETATM 104 O O . HOH E 3 . ? -1.039 4.089 -6.297 1.00 7.92 ? 201 HOH B O 1
HETATM 105 O O . HOH E 3 . ? -11.385 -0.365 12.766 1.00 4.30 ? 202 HOH B O 1
HETATM 106 O O . HOH E 3 . ? 0.846 3.696 -3.275 1.00 7.94 ? 203 HOH B O 1
#