data_6ANM
#
_entry.id 6ANM
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.381
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 6ANM pdb_00006anm 10.2210/pdb6anm/pdb
WWPDB D_1000229512 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 6ANM
_pdbx_database_status.recvd_initial_deposition_date 2017-08-14
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Cameron, A.J.' 1 ?
'Sarojini, V.' 2 ?
'Squire, C.J.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country DE
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Chem Asian J'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1861-471X
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 12
_citation.language ?
_citation.page_first 3195
_citation.page_last 3202
_citation.title
'Crystal and NMR Structures of a Peptidomimetic beta-Turn That Provides Facile Synthesis of 13-Membered Cyclic Tetrapeptides.'
_citation.year 2017
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1002/asia.201701422
_citation.pdbx_database_id_PubMed 29098772
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Cameron, A.J.' 1 ?
primary 'Squire, C.J.' 2 ?
primary 'Edwards, P.J.B.' 3 ?
primary 'Harjes, E.' 4 ?
primary 'Sarojini, V.' 5 ?
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 6ANM
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 12.242
_cell.length_a_esd ?
_cell.length_b 15.554
_cell.length_b_esd ?
_cell.length_c 26.670
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 6ANM
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 23
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'I 2 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description DLE-DPN-BE2-DAL
_entity.formula_weight 468.545
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(D)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DLE)(DPN)(BE2)(DAL)'
_entity_poly.pdbx_seq_one_letter_code_can LFXA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DLE n
1 2 DPN n
1 3 BE2 n
1 4 DAL n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 4
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 6ANM
_struct_ref.pdbx_db_accession 6ANM
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 6ANM
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 4
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 6ANM
_struct_ref_seq.db_align_beg 1001
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 1004
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1001
_struct_ref_seq.pdbx_auth_seq_align_end 1004
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BE2 'L-peptide linking' . '2-AMINOBENZOIC ACID' ? 'C7 H7 N O2' 137.136
DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093
DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173
DPN 'D-peptide linking' . D-PHENYLALANINE ? 'C9 H11 N O2' 165.189
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 6ANM
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 1.35
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 9.21
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method EVAPORATION
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details 'evaporation from methanol/ethanol mixture'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2016-05-17
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.71076
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'AUSTRALIAN SYNCHROTRON BEAMLINE MX2'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.71076
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline MX2
_diffrn_source.pdbx_synchrotron_site 'Australian Synchrotron'
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 6ANM
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 0.64
_reflns.d_resolution_low 13.44
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 4820
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 85.2
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 13.8
_reflns.pdbx_Rmerge_I_obs 0.113
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 22.0
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all 0.033
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.990
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 0.64
_reflns_shell.d_res_low 0.65
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 7.7
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs 54
_reflns_shell.percent_possible_all 15.2
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.123
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 5.0
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all 0.068
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half 0.971
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] -0.03
_refine.aniso_B[1][2] -0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][2] 0.01
_refine.aniso_B[2][3] -0.00
_refine.aniso_B[3][3] 0.02
_refine.B_iso_max ?
_refine.B_iso_mean 3.219
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.987
_refine.correlation_coeff_Fo_to_Fc_free 0.987
_refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 6ANM
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 0.64
_refine.ls_d_res_low 13.44
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 4569
_refine.ls_number_reflns_R_free 251
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 85.23
_refine.ls_percent_reflns_R_free 5.2
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.08637
_refine.ls_R_factor_R_free 0.09010
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.08620
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'AB INITIO PHASING'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.006
_refine.pdbx_overall_ESU_R_Free 0.006
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 0.066
_refine.overall_SU_ML 0.003
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id 1
_refine_hist.pdbx_number_atoms_protein 34
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 34
_refine_hist.d_res_high 0.64
_refine_hist.d_res_low 13.44
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.023 0.020 40 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.004 0.020 36 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 2.330 2.876 50 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 1.454 3.000 76 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 13.120 5.000 1 ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ?
'X-RAY DIFFRACTION' ? 2.578 0.200 4 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.037 0.020 33 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.013 0.020 16 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ?
'X-RAY DIFFRACTION' ? 1.112 0.242 10 ? r_mcbond_it ? ?
'X-RAY DIFFRACTION' ? 1.172 0.247 9 ? r_mcbond_other ? ?
'X-RAY DIFFRACTION' ? 1.909 0.379 9 ? r_mcangle_it ? ?
'X-RAY DIFFRACTION' ? 1.812 0.371 10 ? r_mcangle_other ? ?
'X-RAY DIFFRACTION' ? 0.625 0.293 30 ? r_scbond_it ? ?
'X-RAY DIFFRACTION' ? 0.622 0.295 30 ? r_scbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ?
'X-RAY DIFFRACTION' ? 0.882 0.433 40 ? r_scangle_other ? ?
'X-RAY DIFFRACTION' ? 1.151 3.265 55 ? r_long_range_B_refined ? ?
'X-RAY DIFFRACTION' ? 1.142 3.265 56 ? r_long_range_B_other ? ?
'X-RAY DIFFRACTION' ? 4.205 3.000 75 ? r_rigid_bond_restr ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ?
'X-RAY DIFFRACTION' ? 4.534 5.000 76 ? r_sphericity_bonded ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 0.635
_refine_ls_shell.d_res_low 0.652
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 7
_refine_ls_shell.number_reflns_R_work 65
_refine_ls_shell.percent_reflns_obs 17.65
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.224
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.137
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 6ANM
_struct.title 'Structure of D-Leu-D-Phe-2-Abz-D-Ala at 0.64 Angstrom'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 6ANM
_struct_keywords.text 'unnatural amino acid, peptidomimetic beta-turn, D-amino acid, tetrapeptide, DE NOVO PROTEIN'
_struct_keywords.pdbx_keywords 'DE NOVO PROTEIN'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DLE 1 C ? ? ? 1_555 A DPN 2 N ? ? A DLE 1001 A DPN 1002 1_555 ? ? ? ? ? ? ? 1.349 ? ?
covale2 covale both ? A DPN 2 C ? ? ? 1_555 A BE2 3 N ? ? A DPN 1002 A BE2 1003 1_555 ? ? ? ? ? ? ? 1.352 ? ?
covale3 covale both ? A BE2 3 C ? ? ? 1_555 A DAL 4 N ? ? A BE2 1003 A DAL 1004 1_555 ? ? ? ? ? ? ? 1.342 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_atom_sites.entry_id 6ANM
_atom_sites.fract_transf_matrix[1][1] 0.081686
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.064292
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.037495
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N . DLE A 1 1 ? 7.534 6.162 14.887 1.00 1.78 ? 1001 DLE A N 1
HETATM 2 C CA . DLE A 1 1 ? 8.588 5.163 15.176 1.00 3.40 ? 1001 DLE A CA 1
HETATM 3 C CB . DLE A 1 1 ? 8.382 3.955 14.309 1.00 5.48 ? 1001 DLE A CB 1
HETATM 4 C CG . DLE A 1 1 ? 9.461 2.858 14.643 1.00 5.91 ? 1001 DLE A CG 1
HETATM 5 C CD1 . DLE A 1 1 ? 10.903 3.281 14.563 1.00 7.79 ? 1001 DLE A CD1 1
HETATM 6 C CD2 . DLE A 1 1 ? 9.294 1.720 13.686 1.00 9.98 ? 1001 DLE A CD2 1
HETATM 7 C C . DLE A 1 1 ? 8.676 4.759 16.656 1.00 3.12 ? 1001 DLE A C 1
HETATM 8 O O . DLE A 1 1 ? 9.768 4.698 17.220 1.00 5.07 ? 1001 DLE A O 1
HETATM 9 H H1 . DLE A 1 1 ? 7.497 6.841 15.635 1.00 1.70 ? 1001 DLE A H1 1
HETATM 10 H H2 . DLE A 1 1 ? 6.684 5.727 14.812 1.00 1.66 ? 1001 DLE A H2 1
HETATM 11 H H3 . DLE A 1 1 ? 7.736 6.610 14.062 1.00 1.77 ? 1001 DLE A H3 1
HETATM 12 H HA . DLE A 1 1 ? 9.548 5.619 14.897 1.00 3.03 ? 1001 DLE A HA 1
HETATM 13 H HB2 . DLE A 1 1 ? 8.466 4.229 13.258 1.00 4.91 ? 1001 DLE A HB2 1
HETATM 14 H HB3 . DLE A 1 1 ? 7.385 3.541 14.474 1.00 5.44 ? 1001 DLE A HB3 1
HETATM 15 H HG . DLE A 1 1 ? 9.267 2.445 15.641 1.00 6.68 ? 1001 DLE A HG 1
HETATM 16 H HD11 . DLE A 1 1 ? 11.529 2.428 14.622 1.00 5.35 ? 1001 DLE A HD11 1
HETATM 17 H HD12 . DLE A 1 1 ? 11.070 3.770 13.639 1.00 6.31 ? 1001 DLE A HD12 1
HETATM 18 H HD13 . DLE A 1 1 ? 11.154 3.938 15.350 1.00 7.43 ? 1001 DLE A HD13 1
HETATM 19 H HD21 . DLE A 1 1 ? 8.269 1.461 13.621 1.00 9.62 ? 1001 DLE A HD21 1
HETATM 20 H HD22 . DLE A 1 1 ? 9.646 2.004 12.728 1.00 9.37 ? 1001 DLE A HD22 1
HETATM 21 H HD23 . DLE A 1 1 ? 9.846 0.884 14.031 1.00 7.94 ? 1001 DLE A HD23 1
HETATM 22 N N . DPN A 1 2 ? 7.527 4.379 17.253 1.00 1.90 ? 1002 DPN A N 1
HETATM 23 C CA . DPN A 1 2 ? 7.608 3.716 18.553 1.00 1.74 ? 1002 DPN A CA 1
HETATM 24 C C . DPN A 1 2 ? 7.926 4.667 19.715 1.00 1.88 ? 1002 DPN A C 1
HETATM 25 O O . DPN A 1 2 ? 8.337 4.213 20.778 1.00 2.73 ? 1002 DPN A O 1
HETATM 26 C CB . DPN A 1 2 ? 6.309 2.950 18.812 1.00 1.97 ? 1002 DPN A CB 1
HETATM 27 C CG A DPN A 1 2 ? 6.153 1.789 17.797 0.50 2.16 ? 1002 DPN A CG 1
HETATM 28 C CG B DPN A 1 2 ? 6.377 1.918 19.919 0.50 1.79 ? 1002 DPN A CG 1
HETATM 29 C CD1 A DPN A 1 2 ? 5.030 1.708 16.967 0.50 3.76 ? 1002 DPN A CD1 1
HETATM 30 C CD1 B DPN A 1 2 ? 7.191 0.797 19.759 0.50 1.83 ? 1002 DPN A CD1 1
HETATM 31 C CD2 A DPN A 1 2 ? 7.118 0.767 17.722 0.50 2.45 ? 1002 DPN A CD2 1
HETATM 32 C CD2 B DPN A 1 2 ? 5.586 2.011 21.066 0.50 2.49 ? 1002 DPN A CD2 1
HETATM 33 C CE1 A DPN A 1 2 ? 4.861 0.645 16.085 0.50 4.73 ? 1002 DPN A CE1 1
HETATM 34 C CE1 B DPN A 1 2 ? 7.222 -0.200 20.730 0.50 2.03 ? 1002 DPN A CE1 1
HETATM 35 C CE2 A DPN A 1 2 ? 6.987 -0.256 16.789 0.50 3.06 ? 1002 DPN A CE2 1
HETATM 36 C CE2 B DPN A 1 2 ? 5.625 1.030 22.046 0.50 2.91 ? 1002 DPN A CE2 1
HETATM 37 C CZ A DPN A 1 2 ? 5.850 -0.315 15.959 0.50 4.29 ? 1002 DPN A CZ 1
HETATM 38 C CZ B DPN A 1 2 ? 6.431 -0.086 21.893 0.50 2.60 ? 1002 DPN A CZ 1
HETATM 39 H H . DPN A 1 2 ? 6.599 4.517 16.879 1.00 1.88 ? 1002 DPN A H 1
HETATM 40 H HA . DPN A 1 2 ? 8.422 2.991 18.520 1.00 1.74 ? 1002 DPN A HA 1
HETATM 41 H HB2 . DPN A 1 2 ? 5.425 3.583 18.863 1.00 1.95 ? 1002 DPN A HB2 1
HETATM 42 H HD1 A DPN A 1 2 ? 4.263 2.466 17.041 0.50 3.31 ? 1002 DPN A HD1 1
HETATM 43 H HD1 B DPN A 1 2 ? 7.789 0.691 18.862 0.50 1.92 ? 1002 DPN A HD1 1
HETATM 44 H HD2 A DPN A 1 2 ? 8.005 0.813 18.337 0.50 2.51 ? 1002 DPN A HD2 1
HETATM 45 H HD2 B DPN A 1 2 ? 4.947 2.874 21.180 0.50 2.35 ? 1002 DPN A HD2 1
HETATM 46 H HE1 A DPN A 1 2 ? 3.997 0.617 15.433 0.50 3.63 ? 1002 DPN A HE1 1
HETATM 47 H HE1 B DPN A 1 2 ? 7.869 -1.058 20.604 0.50 2.12 ? 1002 DPN A HE1 1
HETATM 48 H HE2 A DPN A 1 2 ? 7.742 -1.031 16.728 0.50 3.20 ? 1002 DPN A HE2 1
HETATM 49 H HE2 B DPN A 1 2 ? 5.020 1.123 22.938 0.50 2.53 ? 1002 DPN A HE2 1
HETATM 50 H HZ A DPN A 1 2 ? 5.726 -1.136 15.264 0.50 3.77 ? 1002 DPN A HZ 1
HETATM 51 H HZ B DPN A 1 2 ? 6.473 -0.845 22.665 0.50 2.08 ? 1002 DPN A HZ 1
HETATM 52 C C . BE2 A 1 3 ? 8.171 8.516 18.235 1.00 1.92 ? 1003 BE2 A C 1
HETATM 53 O O . BE2 A 1 3 ? 7.792 7.656 17.409 1.00 2.29 ? 1003 BE2 A O 1
HETATM 54 C C1 . BE2 A 1 3 ? 7.941 8.368 19.705 1.00 1.96 ? 1003 BE2 A C1 1
HETATM 55 C CA . BE2 A 1 3 ? 7.814 7.083 20.291 1.00 1.86 ? 1003 BE2 A CA 1
HETATM 56 C C3 . BE2 A 1 3 ? 7.771 6.963 21.687 1.00 2.19 ? 1003 BE2 A C3 1
HETATM 57 N N . BE2 A 1 3 ? 7.701 5.972 19.444 1.00 1.88 ? 1003 BE2 A N 1
HETATM 58 C C4 . BE2 A 1 3 ? 7.745 8.095 22.478 1.00 2.51 ? 1003 BE2 A C4 1
HETATM 59 C C5 . BE2 A 1 3 ? 7.758 9.361 21.915 1.00 2.41 ? 1003 BE2 A C5 1
HETATM 60 C C6 . BE2 A 1 3 ? 7.881 9.491 20.533 1.00 2.18 ? 1003 BE2 A C6 1
HETATM 61 H H3 . BE2 A 1 3 ? 7.580 6.012 22.163 1.00 2.13 ? 1003 BE2 A H3 1
HETATM 62 H H . BE2 A 1 3 ? 7.826 6.210 18.487 1.00 1.91 ? 1003 BE2 A H 1
HETATM 63 H H4 . BE2 A 1 3 ? 7.599 7.992 23.547 1.00 2.38 ? 1003 BE2 A H4 1
HETATM 64 H H5 . BE2 A 1 3 ? 7.826 10.231 22.550 1.00 2.23 ? 1003 BE2 A H5 1
HETATM 65 H H6 . BE2 A 1 3 ? 8.041 10.480 20.128 1.00 2.17 ? 1003 BE2 A H6 1
HETATM 66 N N . DAL A 1 4 ? 8.837 9.606 17.825 1.00 2.09 ? 1004 DAL A N 1
HETATM 67 C CA . DAL A 1 4 ? 9.233 9.687 16.427 1.00 2.09 ? 1004 DAL A CA 1
HETATM 68 C CB . DAL A 1 4 ? 10.091 10.931 16.195 1.00 2.95 ? 1004 DAL A CB 1
HETATM 69 C C . DAL A 1 4 ? 8.002 9.711 15.500 1.00 1.91 ? 1004 DAL A C 1
HETATM 70 O O . DAL A 1 4 ? 8.065 8.974 14.478 1.00 2.98 ? 1004 DAL A O 1
HETATM 71 O OXT . DAL A 1 4 ? 7.055 10.476 15.784 1.00 2.27 ? 1004 DAL A OXT 1
HETATM 72 H H . DAL A 1 4 ? 9.283 10.304 18.317 1.00 1.98 ? 1004 DAL A H 1
HETATM 73 H HA . DAL A 1 4 ? 9.857 8.820 16.155 1.00 2.10 ? 1004 DAL A HA 1
HETATM 74 H HB1 . DAL A 1 4 ? 9.590 11.793 16.566 1.00 2.92 ? 1004 DAL A HB1 1
HETATM 75 H HB2 . DAL A 1 4 ? 11.023 10.816 16.698 1.00 2.75 ? 1004 DAL A HB2 1
HETATM 76 H HB3 . DAL A 1 4 ? 10.263 11.045 15.150 1.00 2.74 ? 1004 DAL A HB3 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . DLE A 1 ? 0.0330 0.0176 0.0171 0.0009 0.0024 0.0003 1001 DLE A N
2 C CA . DLE A 1 ? 0.0552 0.0360 0.0380 0.0236 0.0255 0.0233 1001 DLE A CA
3 C CB . DLE A 1 ? 0.1471 0.0253 0.0355 0.0302 0.0394 0.0095 1001 DLE A CB
4 C CG . DLE A 1 ? 0.1352 0.0399 0.0493 0.0373 0.0354 0.0106 1001 DLE A CG
5 C CD1 . DLE A 1 ? 0.1187 0.1012 0.0759 0.0704 0.0504 0.0395 1001 DLE A CD1
6 C CD2 . DLE A 1 ? 0.2627 0.0450 0.0712 0.0658 0.0188 -0.0072 1001 DLE A CD2
7 C C . DLE A 1 ? 0.0382 0.0368 0.0432 0.0147 0.0170 0.0250 1001 DLE A C
8 O O . DLE A 1 ? 0.0346 0.0815 0.0763 0.0186 0.0143 0.0565 1001 DLE A O
9 H H1 . DLE A 1 ? 0.0288 0.0185 0.0170 0.0047 0.0059 0.0004 1001 DLE A H1
10 H H2 . DLE A 1 ? 0.0272 0.0182 0.0173 0.0056 0.0061 0.0033 1001 DLE A H2
11 H H3 . DLE A 1 ? 0.0291 0.0181 0.0199 0.0047 0.0055 0.0023 1001 DLE A H3
12 H HA . DLE A 1 ? 0.0559 0.0286 0.0306 0.0153 0.0151 0.0134 1001 DLE A HA
13 H HB2 . DLE A 1 ? 0.1087 0.0326 0.0453 0.0290 0.0364 0.0255 1001 DLE A HB2
14 H HB3 . DLE A 1 ? 0.1250 0.0391 0.0423 0.0376 0.0276 0.0138 1001 DLE A HB3
15 H HG . DLE A 1 ? 0.1506 0.0511 0.0519 0.0417 0.0374 0.0165 1001 DLE A HG
16 H HD11 . DLE A 1 ? 0.0626 0.0659 0.0745 0.0251 0.0383 0.0330 1001 DLE A HD11
17 H HD12 . DLE A 1 ? 0.1036 0.0620 0.0741 0.0437 0.0387 0.0259 1001 DLE A HD12
18 H HD13 . DLE A 1 ? 0.1036 0.0847 0.0940 0.0471 0.0408 0.0380 1001 DLE A HD13
19 H HD21 . DLE A 1 ? 0.2424 0.0543 0.0688 0.0642 0.0281 0.0059 1001 DLE A HD21
20 H HD22 . DLE A 1 ? 0.2024 0.0541 0.0994 0.0537 0.0305 0.0097 1001 DLE A HD22
21 H HD23 . DLE A 1 ? 0.1772 0.0539 0.0705 0.0478 0.0305 0.0113 1001 DLE A HD23
22 N N . DPN A 2 ? 0.0330 0.0203 0.0186 0.0031 0.0034 0.0038 1002 DPN A N
23 C CA . DPN A 2 ? 0.0283 0.0178 0.0200 0.0020 0.0020 0.0054 1002 DPN A CA
24 C C . DPN A 2 ? 0.0273 0.0232 0.0209 0.0002 -0.0009 0.0062 1002 DPN A C
25 O O . DPN A 2 ? 0.0503 0.0298 0.0236 0.0067 -0.0061 0.0081 1002 DPN A O
26 C CB . DPN A 2 ? 0.0310 0.0219 0.0219 -0.0001 0.0004 0.0035 1002 DPN A CB
27 C CG A DPN A 2 ? 0.0380 0.0194 0.0243 -0.0003 -0.0002 0.0057 1002 DPN A CG
28 C CG B DPN A 2 ? 0.0239 0.0212 0.0227 -0.0030 -0.0039 0.0022 1002 DPN A CG
29 C CD1 A DPN A 2 ? 0.0625 0.0340 0.0462 0.0074 -0.0246 -0.0004 1002 DPN A CD1
30 C CD1 B DPN A 2 ? 0.0277 0.0186 0.0231 -0.0013 -0.0068 0.0013 1002 DPN A CD1
31 C CD2 A DPN A 2 ? 0.0362 0.0267 0.0300 -0.0019 0.0070 0.0008 1002 DPN A CD2
32 C CD2 B DPN A 2 ? 0.0333 0.0303 0.0309 0.0016 0.0050 0.0069 1002 DPN A CD2
33 C CE1 A DPN A 2 ? 0.0768 0.0502 0.0524 0.0018 -0.0338 -0.0069 1002 DPN A CE1
34 C CE1 B DPN A 2 ? 0.0255 0.0198 0.0317 -0.0037 -0.0073 0.0051 1002 DPN A CE1
35 C CE2 A DPN A 2 ? 0.0559 0.0297 0.0305 -0.0086 0.0116 -0.0043 1002 DPN A CE2
36 C CE2 B DPN A 2 ? 0.0382 0.0366 0.0355 -0.0010 0.0113 0.0111 1002 DPN A CE2
37 C CZ A DPN A 2 ? 0.0803 0.0396 0.0429 -0.0076 -0.0121 -0.0096 1002 DPN A CZ
38 C CZ B DPN A 2 ? 0.0315 0.0295 0.0375 -0.0050 -0.0013 0.0153 1002 DPN A CZ
39 H H . DPN A 2 ? 0.0308 0.0199 0.0206 0.0036 0.0059 0.0069 1002 DPN A H
40 H HA . DPN A 2 ? 0.0254 0.0199 0.0207 0.0012 0.0017 0.0052 1002 DPN A HA
41 H HB2 . DPN A 2 ? 0.0295 0.0222 0.0224 -0.0008 -0.0001 0.0038 1002 DPN A HB2
42 H HD1 A DPN A 2 ? 0.0517 0.0362 0.0379 0.0020 -0.0154 0.0002 1002 DPN A HD1
43 H HD1 B DPN A 2 ? 0.0266 0.0201 0.0261 -0.0023 -0.0046 0.0024 1002 DPN A HD1
44 H HD2 A DPN A 2 ? 0.0392 0.0256 0.0302 -0.0024 0.0047 0.0011 1002 DPN A HD2
45 H HD2 B DPN A 2 ? 0.0302 0.0299 0.0290 0.0000 0.0029 0.0056 1002 DPN A HD2
46 H HE1 A DPN A 2 ? 0.0526 0.0417 0.0435 0.0006 -0.0143 -0.0048 1002 DPN A HE1
47 H HE1 B DPN A 2 ? 0.0258 0.0239 0.0307 -0.0014 -0.0050 0.0056 1002 DPN A HE1
48 H HE2 A DPN A 2 ? 0.0526 0.0361 0.0326 -0.0061 0.0047 -0.0033 1002 DPN A HE2
49 H HE2 B DPN A 2 ? 0.0319 0.0323 0.0317 -0.0012 0.0058 0.0099 1002 DPN A HE2
50 H HZ A DPN A 2 ? 0.0693 0.0372 0.0367 -0.0051 -0.0085 -0.0065 1002 DPN A HZ
51 H HZ B DPN A 2 ? 0.0298 0.0234 0.0258 -0.0037 -0.0002 0.0064 1002 DPN A HZ
52 C C . BE2 A 3 ? 0.0359 0.0189 0.0181 -0.0037 -0.0112 0.0020 1003 BE2 A C
53 O O . BE2 A 3 ? 0.0496 0.0195 0.0179 -0.0066 -0.0131 0.0013 1003 BE2 A O
54 C C1 . BE2 A 3 ? 0.0327 0.0229 0.0187 -0.0083 -0.0079 0.0010 1003 BE2 A C1
55 C CA . BE2 A 3 ? 0.0281 0.0234 0.0192 -0.0067 -0.0064 0.0011 1003 BE2 A CA
56 C C3 . BE2 A 3 ? 0.0325 0.0318 0.0189 -0.0072 -0.0016 0.0041 1003 BE2 A C3
57 N N . BE2 A 3 ? 0.0325 0.0191 0.0199 -0.0025 -0.0068 0.0033 1003 BE2 A N
58 C C4 . BE2 A 3 ? 0.0351 0.0392 0.0209 -0.0101 0.0011 -0.0003 1003 BE2 A C4
59 C C5 . BE2 A 3 ? 0.0321 0.0347 0.0245 -0.0125 0.0009 -0.0080 1003 BE2 A C5
60 C C6 . BE2 A 3 ? 0.0328 0.0257 0.0243 -0.0087 -0.0042 -0.0021 1003 BE2 A C6
61 H H3 . BE2 A 3 ? 0.0320 0.0284 0.0204 -0.0068 -0.0026 0.0014 1003 BE2 A H3
62 H H . BE2 A 3 ? 0.0308 0.0212 0.0204 -0.0033 -0.0050 0.0034 1003 BE2 A H
63 H H4 . BE2 A 3 ? 0.0332 0.0349 0.0222 -0.0096 0.0027 0.0012 1003 BE2 A H4
64 H H5 . BE2 A 3 ? 0.0327 0.0285 0.0232 -0.0104 -0.0007 -0.0033 1003 BE2 A H5
65 H H6 . BE2 A 3 ? 0.0327 0.0273 0.0225 -0.0087 -0.0041 -0.0007 1003 BE2 A H6
66 N N . DAL A 4 ? 0.0405 0.0220 0.0168 -0.0073 -0.0104 0.0014 1004 DAL A N
67 C CA . DAL A 4 ? 0.0357 0.0251 0.0183 -0.0015 -0.0054 0.0016 1004 DAL A CA
68 C CB . DAL A 4 ? 0.0449 0.0417 0.0255 -0.0155 -0.0044 0.0057 1004 DAL A CB
69 C C . DAL A 4 ? 0.0406 0.0176 0.0143 -0.0053 -0.0060 0.0021 1004 DAL A C
70 O O . DAL A 4 ? 0.0728 0.0221 0.0182 0.0005 -0.0156 -0.0019 1004 DAL A O
71 O OXT . DAL A 4 ? 0.0339 0.0310 0.0213 -0.0047 -0.0037 0.0013 1004 DAL A OXT
72 H H . DAL A 4 ? 0.0360 0.0212 0.0180 -0.0057 -0.0089 0.0005 1004 DAL A H
73 H HA . DAL A 4 ? 0.0373 0.0243 0.0182 -0.0024 -0.0058 0.0010 1004 DAL A HA
74 H HB1 . DAL A 4 ? 0.0426 0.0427 0.0257 -0.0120 -0.0046 0.0068 1004 DAL A HB1
75 H HB2 . DAL A 4 ? 0.0407 0.0367 0.0269 -0.0108 -0.0004 0.0045 1004 DAL A HB2
76 H HB3 . DAL A 4 ? 0.0406 0.0361 0.0272 -0.0103 -0.0008 0.0069 1004 DAL A HB3
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DLE 1 1001 1001 DLE DLE A . n
A 1 2 DPN 2 1002 1002 DPN DPN A . n
A 1 3 BE2 3 1003 1003 BE2 BE2 A . n
A 1 4 DAL 4 1004 1004 DAL DAL A . n
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2017-11-15
2 'Structure model' 1 1 2017-12-06
3 'Structure model' 1 2 2018-01-03
4 'Structure model' 2 0 2023-11-15
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Data collection'
5 4 'Structure model' 'Database references'
6 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' citation
3 4 'Structure model' atom_site
4 4 'Structure model' atom_site_anisotrop
5 4 'Structure model' chem_comp_atom
6 4 'Structure model' chem_comp_bond
7 4 'Structure model' database_2
8 4 'Structure model' pdbx_validate_main_chain_plane
9 4 'Structure model' pdbx_validate_rmsd_angle
10 4 'Structure model' pdbx_validate_torsion
11 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.title'
2 3 'Structure model' '_citation.journal_volume'
3 3 'Structure model' '_citation.page_first'
4 3 'Structure model' '_citation.page_last'
5 4 'Structure model' '_atom_site.auth_atom_id'
6 4 'Structure model' '_atom_site.label_atom_id'
7 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id'
8 4 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id'
9 4 'Structure model' '_database_2.pdbx_DOI'
10 4 'Structure model' '_database_2.pdbx_database_accession'
11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0158 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXS ? ? ? . 4
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 CA
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 BE2
_pdbx_validate_rmsd_angle.auth_seq_id_1 1003
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 C
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 BE2
_pdbx_validate_rmsd_angle.auth_seq_id_2 1003
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 N
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 DAL
_pdbx_validate_rmsd_angle.auth_seq_id_3 1004
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 141.09
_pdbx_validate_rmsd_angle.angle_target_value 117.20
_pdbx_validate_rmsd_angle.angle_deviation 23.89
_pdbx_validate_rmsd_angle.angle_standard_deviation 2.20
_pdbx_validate_rmsd_angle.linker_flag Y
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id BE2
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 1003
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 155.40
_pdbx_validate_torsion.psi -146.47
#
_pdbx_validate_main_chain_plane.id 1
_pdbx_validate_main_chain_plane.PDB_model_num 1
_pdbx_validate_main_chain_plane.auth_comp_id BE2
_pdbx_validate_main_chain_plane.auth_asym_id A
_pdbx_validate_main_chain_plane.auth_seq_id 1003
_pdbx_validate_main_chain_plane.PDB_ins_code ?
_pdbx_validate_main_chain_plane.label_alt_id ?
_pdbx_validate_main_chain_plane.improper_torsion_angle -13.43
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BE2 C C N N 1
BE2 O O N N 2
BE2 OXT O N N 3
BE2 C1 C Y N 4
BE2 CA C Y N 5
BE2 C3 C Y N 6
BE2 N N N N 7
BE2 C4 C Y N 8
BE2 C5 C Y N 9
BE2 C6 C Y N 10
BE2 HXT H N N 11
BE2 H3 H N N 12
BE2 H H N N 13
BE2 H2 H N N 14
BE2 H4 H N N 15
BE2 H5 H N N 16
BE2 H6 H N N 17
DAL N N N N 18
DAL CA C N R 19
DAL CB C N N 20
DAL C C N N 21
DAL O O N N 22
DAL OXT O N N 23
DAL H H N N 24
DAL H2 H N N 25
DAL HA H N N 26
DAL HB1 H N N 27
DAL HB2 H N N 28
DAL HB3 H N N 29
DAL HXT H N N 30
DLE N N N N 31
DLE CA C N R 32
DLE CB C N N 33
DLE CG C N N 34
DLE CD1 C N N 35
DLE CD2 C N N 36
DLE C C N N 37
DLE O O N N 38
DLE OXT O N N 39
DLE H H N N 40
DLE H2 H N N 41
DLE HA H N N 42
DLE HB2 H N N 43
DLE HB3 H N N 44
DLE HG H N N 45
DLE HD11 H N N 46
DLE HD12 H N N 47
DLE HD13 H N N 48
DLE HD21 H N N 49
DLE HD22 H N N 50
DLE HD23 H N N 51
DLE HXT H N N 52
DPN N N N N 53
DPN CA C N R 54
DPN C C N N 55
DPN O O N N 56
DPN OXT O N N 57
DPN CB C N N 58
DPN CG C Y N 59
DPN CD1 C Y N 60
DPN CD2 C Y N 61
DPN CE1 C Y N 62
DPN CE2 C Y N 63
DPN CZ C Y N 64
DPN H H N N 65
DPN H2 H N N 66
DPN HA H N N 67
DPN HXT H N N 68
DPN HB2 H N N 69
DPN HB3 H N N 70
DPN HD1 H N N 71
DPN HD2 H N N 72
DPN HE1 H N N 73
DPN HE2 H N N 74
DPN HZ H N N 75
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BE2 C O doub N N 1
BE2 C OXT sing N N 2
BE2 C C1 sing N N 3
BE2 OXT HXT sing N N 4
BE2 C1 CA doub Y N 5
BE2 C1 C6 sing Y N 6
BE2 CA C3 sing Y N 7
BE2 CA N sing N N 8
BE2 C3 C4 doub Y N 9
BE2 C3 H3 sing N N 10
BE2 N H sing N N 11
BE2 N H2 sing N N 12
BE2 C4 C5 sing Y N 13
BE2 C4 H4 sing N N 14
BE2 C5 C6 doub Y N 15
BE2 C5 H5 sing N N 16
BE2 C6 H6 sing N N 17
DAL N CA sing N N 18
DAL N H sing N N 19
DAL N H2 sing N N 20
DAL CA CB sing N N 21
DAL CA C sing N N 22
DAL CA HA sing N N 23
DAL CB HB1 sing N N 24
DAL CB HB2 sing N N 25
DAL CB HB3 sing N N 26
DAL C O doub N N 27
DAL C OXT sing N N 28
DAL OXT HXT sing N N 29
DLE N CA sing N N 30
DLE N H sing N N 31
DLE N H2 sing N N 32
DLE CA CB sing N N 33
DLE CA C sing N N 34
DLE CA HA sing N N 35
DLE CB CG sing N N 36
DLE CB HB2 sing N N 37
DLE CB HB3 sing N N 38
DLE CG CD1 sing N N 39
DLE CG CD2 sing N N 40
DLE CG HG sing N N 41
DLE CD1 HD11 sing N N 42
DLE CD1 HD12 sing N N 43
DLE CD1 HD13 sing N N 44
DLE CD2 HD21 sing N N 45
DLE CD2 HD22 sing N N 46
DLE CD2 HD23 sing N N 47
DLE C O doub N N 48
DLE C OXT sing N N 49
DLE OXT HXT sing N N 50
DPN N CA sing N N 51
DPN N H sing N N 52
DPN N H2 sing N N 53
DPN CA C sing N N 54
DPN CA CB sing N N 55
DPN CA HA sing N N 56
DPN C O doub N N 57
DPN C OXT sing N N 58
DPN OXT HXT sing N N 59
DPN CB CG sing N N 60
DPN CB HB2 sing N N 61
DPN CB HB3 sing N N 62
DPN CG CD1 doub Y N 63
DPN CG CD2 sing Y N 64
DPN CD1 CE1 sing Y N 65
DPN CD1 HD1 sing N N 66
DPN CD2 CE2 doub Y N 67
DPN CD2 HD2 sing N N 68
DPN CE1 CZ doub Y N 69
DPN CE1 HE1 sing N N 70
DPN CE2 CZ sing Y N 71
DPN CE2 HE2 sing N N 72
DPN CZ HZ sing N N 73
#
loop_
_pdbx_entity_instance_feature.ordinal
_pdbx_entity_instance_feature.comp_id
_pdbx_entity_instance_feature.asym_id
_pdbx_entity_instance_feature.seq_num
_pdbx_entity_instance_feature.auth_comp_id
_pdbx_entity_instance_feature.auth_asym_id
_pdbx_entity_instance_feature.auth_seq_num
_pdbx_entity_instance_feature.feature_type
_pdbx_entity_instance_feature.details
1 BE2 ? ? BE2 ? ? 'SUBJECT OF INVESTIGATION' ?
2 DAL ? ? DAL ? ? 'SUBJECT OF INVESTIGATION' ?
3 DLE ? ? DLE ? ? 'SUBJECT OF INVESTIGATION' ?
4 DPN ? ? DPN ? ? 'SUBJECT OF INVESTIGATION' ?
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#