HEADER RNA BINDING PROTEIN 14-JUN-17 5XSG
TITLE ULTRAHIGH RESOLUTION STRUCTURE OF FUS (37-42) SYSGYS DETERMINED BY
TITLE 2 MICROED
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA-BINDING PROTEIN FUS;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 37-42;
COMPND 5 SYNONYM: SER-TYR-SER-GLY-TYR-SER;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 4 ORGANISM_COMMON: HUMAN;
SOURCE 5 ORGANISM_TAXID: 9606
KEYWDS CROSS-COIL AMYLOID FIBRIL, FUS LOW COMPLEXITY DOMAIN, REVERSIBLE
KEYWDS 2 AMYLOID FIBRIL, RNA GRANULE ASSEMBLY, RNA BINDING PROTEIN
EXPDTA ELECTRON CRYSTALLOGRAPHY
AUTHOR F.LUO,X.GUI,H.ZHOU,D.LI,X.LI,C.LIU
REVDAT 3 27-MAR-24 5XSG 1 REMARK
REVDAT 2 18-APR-18 5XSG 1 JRNL
REVDAT 1 04-APR-18 5XSG 0
JRNL AUTH F.LUO,X.GUI,H.ZHOU,J.GU,Y.LI,X.LIU,M.ZHAO,D.LI,X.LI,C.LIU
JRNL TITL ATOMIC STRUCTURES OF FUS LC DOMAIN SEGMENTS REVEAL BASES FOR
JRNL TITL 2 REVERSIBLE AMYLOID FIBRIL FORMATION.
JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 341 2018
JRNL REFN ESSN 1545-9985
JRNL PMID 29610493
JRNL DOI 10.1038/S41594-018-0050-8
REMARK 2
REMARK 2 RESOLUTION. 0.73 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.11.1_2575
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.73
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 2.00
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.450
REMARK 3 COMPLETENESS FOR RANGE (%) : 83.5
REMARK 3 NUMBER OF REFLECTIONS : 3872
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.263
REMARK 3 R VALUE (WORKING SET) : 0.261
REMARK 3 FREE R VALUE : 0.289
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.150
REMARK 3 FREE R VALUE TEST SET COUNT : 393
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 1.9998 - 1.0208 0.81 1142 132 0.2322 0.2506
REMARK 3 2 1.0208 - 0.8290 0.85 1159 127 0.3005 0.3498
REMARK 3 3 0.8290 - 0.7300 0.85 1178 134 0.3457 0.3886
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.940
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.56
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.014 48
REMARK 3 ANGLE : 1.265 64
REMARK 3 CHIRALITY : 0.116 5
REMARK 3 PLANARITY : 0.006 8
REMARK 3 DIHEDRAL : 9.220 15
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5XSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-17.
REMARK 100 THE DEPOSITION ID IS D_1300004044.
REMARK 240
REMARK 240 EXPERIMENTAL DETAILS
REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY
REMARK 240 SAMPLE TYPE : 3D ARRAY
REMARK 240 SPECIMEN TYPE : NULL
REMARK 240 DATA ACQUISITION
REMARK 240 DATE OF DATA COLLECTION : NULL
REMARK 240 TEMPERATURE (KELVIN) : NULL
REMARK 240 PH : NULL
REMARK 240 NUMBER OF CRYSTALS USED : NULL
REMARK 240 MICROSCOPE MODEL : FEI TECNAI F20
REMARK 240 DETECTOR TYPE : GATAN ULTRASCAN 4000 (4K X 4K)
REMARK 240 ACCELERATION VOLTAGE (KV) : 200
REMARK 240 NUMBER OF UNIQUE REFLECTIONS : NULL
REMARK 240 RESOLUTION RANGE HIGH (A) : NULL
REMARK 240 RESOLUTION RANGE LOW (A) : NULL
REMARK 240 DATA SCALING SOFTWARE : NULL
REMARK 240 COMPLETENESS FOR RANGE (%) : NULL
REMARK 240 DATA REDUNDANCY : NULL
REMARK 240 IN THE HIGHEST RESOLUTION SHELL
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :NULL
REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :NULL
REMARK 240 COMPLETENESS FOR SHELL (%) : NULL
REMARK 240 DATA REDUNDANCY IN SHELL : NULL
REMARK 240 R MERGE FOR SHELL (I) : NULL
REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 240 SOFTWARE USED : NULL
REMARK 240 STARTING MODEL : NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 2.45000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 5XSG A 73 78 UNP P35637 FUS_HUMAN 37 42
SEQRES 1 A 6 SER TYR SER GLY TYR SER
FORMUL 2 HOH *(H2 O)
CRYST1 18.000 4.900 18.600 90.00 90.90 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.055556 0.000000 0.000873 0.00000
SCALE2 0.000000 0.204082 0.000000 0.00000
SCALE3 0.000000 0.000000 0.053770 0.00000
ATOM 1 N SER A 73 0.500 0.742 29.058 1.00 4.30 N
ANISOU 1 N SER A 73 534 592 507 155 -26 111 N
ATOM 2 CA SER A 73 1.119 -0.130 30.093 1.00 5.53 C
ANISOU 2 CA SER A 73 773 570 759 54 -54 81 C
ATOM 3 C SER A 73 1.480 0.648 31.382 1.00 3.93 C
ANISOU 3 C SER A 73 547 411 535 66 -58 59 C
ATOM 4 O SER A 73 1.405 1.886 31.422 1.00 4.40 O
ANISOU 4 O SER A 73 589 514 570 49 -91 96 O
ATOM 5 CB SER A 73 2.356 -0.818 29.502 1.00 5.24 C
ANISOU 5 CB SER A 73 677 676 639 22 -73 59 C
ATOM 6 OG SER A 73 1.964 -1.847 28.614 1.00 4.90 O
ANISOU 6 OG SER A 73 602 739 520 80 13 -4 O
ATOM 7 H1 SER A 73 0.348 0.266 28.322 1.00 3.51 H
ATOM 8 H2 SER A 73 -0.267 1.078 29.364 1.00 5.92 H
ATOM 9 H3 SER A 73 1.073 1.394 28.866 1.00 2.64 H
ATOM 10 HA SER A 73 0.486 -0.823 30.337 1.00 40.59 H
ATOM 11 HB2 SER A 73 2.877 -0.167 29.002 1.00 5.57 H
ATOM 12 HB3 SER A 73 2.890 -1.197 30.219 1.00 23.64 H
ATOM 13 HG SER A 73 1.138 -1.792 28.511 1.00 2.58 H
ATOM 14 N TYR A 74 1.851 -0.096 32.433 1.00 5.20 N
ANISOU 14 N TYR A 74 657 661 657 178 -47 84 N
ATOM 15 CA TYR A 74 2.363 0.452 33.687 1.00 3.82 C
ANISOU 15 CA TYR A 74 477 497 479 92 -20 105 C
ATOM 16 C TYR A 74 3.723 -0.186 33.957 1.00 3.71 C
ANISOU 16 C TYR A 74 483 432 493 77 25 95 C
ATOM 17 O TYR A 74 3.884 -1.402 33.782 1.00 4.84 O
ANISOU 17 O TYR A 74 607 690 544 -125 94 34 O
ATOM 18 CB TYR A 74 1.398 0.145 34.862 1.00 4.60 C
ANISOU 18 CB TYR A 74 517 695 538 77 -13 128 C
ATOM 19 CG TYR A 74 1.732 0.858 36.180 1.00 4.49 C
ANISOU 19 CG TYR A 74 490 691 524 95 -26 58 C
ATOM 20 CD1 TYR A 74 2.833 0.483 36.963 1.00 5.92 C
ANISOU 20 CD1 TYR A 74 790 605 855 167 -7 -42 C
ATOM 21 CD2 TYR A 74 0.941 1.904 36.641 1.00 6.30 C
ANISOU 21 CD2 TYR A 74 835 650 909 147 -52 37 C
ATOM 22 CE1 TYR A 74 3.133 1.162 38.171 1.00 6.92 C
ANISOU 22 CE1 TYR A 74 883 796 951 39 -45 -131 C
ATOM 23 CE2 TYR A 74 1.216 2.566 37.834 1.00 4.15 C
ANISOU 23 CE2 TYR A 74 499 526 551 213 -30 -21 C
ATOM 24 CZ TYR A 74 2.327 2.207 38.597 1.00 4.60 C
ANISOU 24 CZ TYR A 74 495 734 518 42 -21 -6 C
ATOM 25 OH TYR A 74 2.561 2.914 39.770 1.00 4.53 O
ANISOU 25 OH TYR A 74 538 644 540 183 5 55 O
ATOM 26 H TYR A 74 1.812 -0.956 32.438 1.00 30.85 H
ATOM 27 HA TYR A 74 2.475 1.418 33.614 1.00 3.60 H
ATOM 28 HB2 TYR A 74 0.505 0.416 34.604 1.00 10.86 H
ATOM 29 HB3 TYR A 74 1.409 -0.809 35.031 1.00 7.19 H
ATOM 30 HD1 TYR A 74 3.385 -0.209 36.677 1.00 50.76 H
ATOM 31 HD2 TYR A 74 0.202 2.167 36.140 1.00 62.52 H
ATOM 32 HE1 TYR A 74 3.871 0.908 38.677 1.00 68.42 H
ATOM 33 HE2 TYR A 74 0.675 3.269 38.110 1.00 13.70 H
ATOM 34 HH TYR A 74 3.174 2.553 40.218 1.00 6.58 H
ATOM 35 N SER A 75 4.710 0.636 34.338 1.00 3.35 N
ANISOU 35 N SER A 75 395 415 462 31 -22 46 N
ATOM 36 CA SER A 75 6.017 0.155 34.798 1.00 3.51 C
ANISOU 36 CA SER A 75 444 389 502 14 8 16 C
ATOM 37 C SER A 75 6.374 0.822 36.124 1.00 3.45 C
ANISOU 37 C SER A 75 391 400 521 -97 22 16 C
ATOM 38 O SER A 75 6.319 2.053 36.227 1.00 3.47 O
ANISOU 38 O SER A 75 427 308 583 8 43 3 O
ATOM 39 CB SER A 75 7.121 0.413 33.753 1.00 4.13 C
ANISOU 39 CB SER A 75 524 507 538 -3 20 74 C
ATOM 40 OG SER A 75 7.279 1.799 33.445 1.00 5.01 O
ANISOU 40 OG SER A 75 753 410 742 -65 43 23 O
ATOM 41 H SER A 75 4.641 1.493 34.326 1.00 3.93 H
ATOM 42 HA SER A 75 5.966 -0.804 34.941 1.00 5.33 H
ATOM 43 HB2 SER A 75 7.963 0.075 34.099 1.00 6.83 H
ATOM 44 HB3 SER A 75 6.886 -0.056 32.932 1.00 3.64 H
ATOM 45 HG SER A 75 7.139 2.266 34.129 1.00 32.12 H
ATOM 46 N GLY A 76 6.729 0.021 37.138 1.00 3.23 N
ANISOU 46 N GLY A 76 412 315 502 -164 43 73 N
ATOM 47 CA GLY A 76 7.134 0.544 38.435 1.00 3.68 C
ANISOU 47 CA GLY A 76 479 434 486 -144 56 56 C
ATOM 48 C GLY A 76 6.511 -0.113 39.657 1.00 3.12 C
ANISOU 48 C GLY A 76 475 242 468 -51 44 5 C
ATOM 49 O GLY A 76 6.395 -1.346 39.723 1.00 4.00 O
ANISOU 49 O GLY A 76 553 503 463 -126 33 54 O
ATOM 50 H GLY A 76 6.733 -0.838 37.092 1.00 8.48 H
ATOM 51 HA2 GLY A 76 8.099 0.455 38.513 1.00 10.12 H
ATOM 52 HA3 GLY A 76 6.919 1.488 38.476 1.00 3.58 H
ATOM 53 N TYR A 77 6.121 0.729 40.632 1.00 4.57 N
ANISOU 53 N TYR A 77 770 276 690 -85 43 -68 N
ATOM 54 CA TYR A 77 5.646 0.335 41.960 1.00 3.96 C
ANISOU 54 CA TYR A 77 586 341 579 -81 30 34 C
ATOM 55 C TYR A 77 4.263 0.947 42.170 1.00 3.83 C
ANISOU 55 C TYR A 77 481 450 523 3 13 17 C
ATOM 56 O TYR A 77 4.075 2.150 41.963 1.00 3.35 O
ANISOU 56 O TYR A 77 466 320 488 30 -34 15 O
ATOM 57 CB TYR A 77 6.625 0.880 43.036 1.00 3.74 C
ANISOU 57 CB TYR A 77 538 329 552 -63 -8 -35 C
ATOM 58 CG TYR A 77 6.272 0.689 44.527 1.00 3.94 C
ANISOU 58 CG TYR A 77 472 558 469 41 -35 56 C
ATOM 59 CD1 TYR A 77 5.301 1.470 45.162 1.00 4.15 C
ANISOU 59 CD1 TYR A 77 502 588 486 94 -58 139 C
ATOM 60 CD2 TYR A 77 6.946 -0.261 45.312 1.00 4.05 C
ANISOU 60 CD2 TYR A 77 482 567 490 -115 -11 30 C
ATOM 61 CE1 TYR A 77 5.019 1.312 46.542 1.00 4.70 C
ANISOU 61 CE1 TYR A 77 535 750 499 35 10 105 C
ATOM 62 CE2 TYR A 77 6.672 -0.413 46.673 1.00 4.26 C
ANISOU 62 CE2 TYR A 77 519 572 527 -68 -43 90 C
ATOM 63 CZ TYR A 77 5.701 0.352 47.283 1.00 4.53 C
ANISOU 63 CZ TYR A 77 570 649 503 -34 0 91 C
ATOM 64 OH TYR A 77 5.437 0.200 48.639 1.00 5.68 O
ANISOU 64 OH TYR A 77 869 511 777 80 9 43 O
ATOM 65 H TYR A 77 6.125 1.584 40.531 1.00 39.63 H
ATOM 66 HA TYR A 77 5.590 -0.632 42.031 1.00 6.14 H
ATOM 67 HB2 TYR A 77 7.486 0.463 42.894 1.00 9.19 H
ATOM 68 HB3 TYR A 77 6.705 1.837 42.890 1.00 6.10 H
ATOM 69 HD1 TYR A 77 4.842 2.117 44.676 1.00 6.00 H
ATOM 70 HD2 TYR A 77 7.606 -0.787 44.925 1.00 6.12 H
ATOM 71 HE1 TYR A 77 4.368 1.840 46.946 1.00 3.46 H
ATOM 72 HE2 TYR A 77 7.132 -1.054 47.170 1.00 9.59 H
ATOM 73 HH TYR A 77 5.938 -0.389 48.965 1.00 40.65 H
ATOM 74 N SER A 78 3.297 0.119 42.553 1.00 4.90 N
ANISOU 74 N SER A 78 700 411 750 106 42 95 N
ATOM 75 CA SER A 78 1.962 0.579 42.936 1.00 4.39 C
ANISOU 75 CA SER A 78 552 573 544 128 -12 104 C
ATOM 76 C SER A 78 1.504 -0.122 44.219 1.00 4.84 C
ANISOU 76 C SER A 78 635 636 569 4 16 -2 C
ATOM 77 O SER A 78 0.494 0.285 44.804 1.00 5.36 O
ANISOU 77 O SER A 78 729 699 609 118 27 -106 O
ATOM 78 CB SER A 78 0.956 0.336 41.792 1.00 4.87 C
ANISOU 78 CB SER A 78 538 772 540 141 -22 9 C
ATOM 79 OG SER A 78 0.627 -1.041 41.638 1.00 5.55 O
ANISOU 79 OG SER A 78 603 929 578 71 9 -130 O
ATOM 80 OXT SER A 78 2.136 -1.095 44.651 1.00 5.34 O
ANISOU 80 OXT SER A 78 743 728 559 35 35 127 O
ATOM 81 H SER A 78 3.390 -0.735 42.600 1.00 39.88 H
ATOM 82 HA SER A 78 1.994 1.534 43.111 1.00 6.21 H
ATOM 83 HB2 SER A 78 0.138 0.822 41.994 1.00 7.59 H
ATOM 84 HB3 SER A 78 1.338 0.656 40.964 1.00 2.78 H
ATOM 85 HG SER A 78 0.051 -1.129 41.033 1.00 11.91 H
TER 86 SER A 78
HETATM 87 O HOH A 101 5.171 2.630 49.995 1.00 3.87 O
MASTER 153 0 0 0 0 0 0 6 48 1 0 1
END