data_5WHP
#
_entry.id 5WHP
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5WHP pdb_00005whp 10.2210/pdb5whp/pdb
WWPDB D_1000229046 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2018-05-23
2 'Structure model' 1 1 2018-05-30
3 'Structure model' 1 2 2018-06-06
4 'Structure model' 1 3 2018-06-20
5 'Structure model' 1 4 2019-12-18
6 'Structure model' 1 5 2020-01-15
7 'Structure model' 1 6 2024-03-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Database references'
7 5 'Structure model' 'Author supporting evidence'
8 6 'Structure model' 'Data collection'
9 7 'Structure model' 'Data collection'
10 7 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' citation
4 3 'Structure model' citation_author
5 4 'Structure model' citation
6 5 'Structure model' pdbx_audit_support
7 6 'Structure model' reflns_shell
8 7 'Structure model' chem_comp_atom
9 7 'Structure model' chem_comp_bond
10 7 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.journal_id_ISSN'
5 2 'Structure model' '_citation.pdbx_database_id_DOI'
6 2 'Structure model' '_citation.title'
7 2 'Structure model' '_citation.year'
8 3 'Structure model' '_citation.journal_abbrev'
9 3 'Structure model' '_citation.pdbx_database_id_PubMed'
10 3 'Structure model' '_citation.title'
11 3 'Structure model' '_citation_author.name'
12 4 'Structure model' '_citation.journal_volume'
13 4 'Structure model' '_citation.page_first'
14 4 'Structure model' '_citation.page_last'
15 5 'Structure model' '_pdbx_audit_support.funding_organization'
16 6 'Structure model' '_reflns_shell.percent_possible_all'
17 7 'Structure model' '_database_2.pdbx_DOI'
18 7 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5WHP
_pdbx_database_status.recvd_initial_deposition_date 2017-07-17
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Guenther, E.L.' 1 ?
'Sawaya, M.R.' 2 0000-0003-0874-9043
'Eisenberg, D.S.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nat. Struct. Mol. Biol.'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1545-9985
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 25
_citation.language ?
_citation.page_first 463
_citation.page_last 471
_citation.title
'Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.'
_citation.year 2018
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1038/s41594-018-0064-2
_citation.pdbx_database_id_PubMed 29786080
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Guenther, E.L.' 1 ?
primary 'Cao, Q.' 2 ?
primary 'Trinh, H.' 3 ?
primary 'Lu, J.' 4 ?
primary 'Sawaya, M.R.' 5 ?
primary 'Cascio, D.' 6 ?
primary 'Boyer, D.R.' 7 ?
primary 'Rodriguez, J.A.' 8 ?
primary 'Hughes, M.P.' 9 ?
primary 'Eisenberg, D.S.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Segment of TAR DNA-binding protein 43' 671.699 1 ? A315T 'UNP residues 312-317' ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name TDP-43
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code NFGTFS
_entity_poly.pdbx_seq_one_letter_code_can NFGTFS
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ASN n
1 2 PHE n
1 3 GLY n
1 4 THR n
1 5 PHE n
1 6 SER n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details 'Synthetic peptide NFGTFS corresponding tosegment 312-317 of TDP-43'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ASN 1 312 1 ASN ASN A . n
A 1 2 PHE 2 313 2 PHE PHE A . n
A 1 3 GLY 3 314 3 GLY GLY A . n
A 1 4 THR 4 315 4 THR THR A . n
A 1 5 PHE 5 316 5 PHE PHE A . n
A 1 6 SER 6 317 6 SER SER A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 3 HOH HOH A .
B 2 HOH 3 103 2 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.7.0032 2
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 4
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 96.910
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 5WHP
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 15.330
_cell.length_a_esd ?
_cell.length_b 4.840
_cell.length_b_esd ?
_cell.length_c 23.570
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 2
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5WHP
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5WHP
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 4.6
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '100mM sodium acetate 4.6, 200mM ammonium acetate, 30% PEG 4000'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2014-10-16
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9791
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9791
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate 4.863
_reflns.entry_id 5WHP
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.000
_reflns.d_resolution_low 15.220
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1823
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3.000
_reflns.percent_possible_obs 87.600
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 4.918
_reflns.pdbx_Rmerge_I_obs 0.086
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 14.970
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.959
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.096
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.993
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.000 1.030 ? 7.590 ? ? ? ? 57 37.000 ? ? ? ? 0.104 ? ? ? ? ? ? ? ? 2.842 ? ? ? ? 0.125 ? ? 1 1 0.980 ?
1.030 1.060 ? 8.940 ? ? ? ? 90 56.600 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 3.278 ? ? ? ? 0.108 ? ? 2 1 0.991 ?
1.060 1.100 ? 10.820 ? ? ? ? 106 71.100 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 3.387 ? ? ? ? 0.103 ? ? 3 1 0.989 ?
1.100 1.140 ? 12.570 ? ? ? ? 149 95.500 ? ? ? ? 0.104 ? ? ? ? ? ? ? ? 4.262 ? ? ? ? 0.118 ? ? 4 1 0.989 ?
1.140 1.180 ? 13.840 ? ? ? ? 157 99.400 ? ? ? ? 0.106 ? ? ? ? ? ? ? ? 4.866 ? ? ? ? 0.119 ? ? 5 1 0.988 ?
1.180 1.230 ? 14.650 ? ? ? ? 131 92.900 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 5.366 ? ? ? ? 0.106 ? ? 6 1 0.993 ?
1.230 1.280 ? 15.400 ? ? ? ? 127 100.000 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 5.591 ? ? ? ? 0.103 ? ? 7 1 0.990 ?
1.280 1.340 ? 16.090 ? ? ? ? 127 100.000 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 5.591 ? ? ? ? 0.098 ? ? 8 1 0.991 ?
1.340 1.420 ? 15.000 ? ? ? ? 128 99.200 ? ? ? ? 0.086 ? ? ? ? ? ? ? ? 5.422 ? ? ? ? 0.096 ? ? 9 1 0.995 ?
1.420 1.500 ? 16.680 ? ? ? ? 124 100.000 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 5.484 ? ? ? ? 0.097 ? ? 10 1 0.992 ?
1.500 1.610 ? 16.730 ? ? ? ? 122 100.000 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? 5.262 ? ? ? ? 0.086 ? ? 11 1 0.993 ?
1.610 1.730 ? 17.470 ? ? ? ? 91 98.900 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 5.582 ? ? ? ? 0.097 ? ? 12 1 0.995 ?
1.730 1.900 ? 17.930 ? ? ? ? 96 100.000 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 5.573 ? ? ? ? 0.093 ? ? 13 1 0.994 ?
1.900 2.120 ? 17.980 ? ? ? ? 90 100.000 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 5.422 ? ? ? ? 0.095 ? ? 14 1 0.989 ?
2.120 2.450 ? 17.970 ? ? ? ? 91 97.800 ? ? ? ? 0.085 ? ? ? ? ? ? ? ? 5.088 ? ? ? ? 0.095 ? ? 15 1 0.987 ?
2.450 3.000 ? 18.000 ? ? ? ? 65 97.000 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 4.938 ? ? ? ? 0.082 ? ? 16 1 0.992 ?
3.000 4.250 ? 17.040 ? ? ? ? 49 81.700 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? 4.490 ? ? ? ? 0.085 ? ? 17 1 0.989 ?
4.250 15.220 ? 14.570 ? ? ? ? 23 62.200 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 3.348 ? ? ? ? 0.083 ? ? 18 1 0.989 ?
#
_refine.aniso_B[1][1] 0.1900
_refine.aniso_B[1][2] -0.0000
_refine.aniso_B[1][3] -0.1700
_refine.aniso_B[2][2] 0.0700
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] -0.2300
_refine.B_iso_max 36.250
_refine.B_iso_mean 2.6260
_refine.B_iso_min 2.000
_refine.correlation_coeff_Fo_to_Fc 0.9860
_refine.correlation_coeff_Fo_to_Fc_free 0.9830
_refine.details
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5WHP
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.0000
_refine.ls_d_res_low 15.2200
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 1639
_refine.ls_number_reflns_R_free 183
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 87.6800
_refine.ls_percent_reflns_R_free 10.0000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.0873
_refine.ls_R_factor_R_free 0.0929
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.0866
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'AB INITIO PHASING'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.0200
_refine.pdbx_overall_ESU_R_Free 0.0180
_refine.pdbx_solvent_vdw_probe_radii 1.2000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 0.4360
_refine.overall_SU_ML 0.0100
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.d_res_high 1.0000
_refine_hist.d_res_low 15.2200
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 51
_refine_hist.pdbx_number_residues_total 6
_refine_hist.pdbx_B_iso_mean_solvent 14.75
_refine_hist.pdbx_number_atoms_protein 48
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.019 0.020 49 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.001 0.020 39 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 1.790 1.874 65 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 0.687 3.000 88 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 4.212 5.000 5 ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? 14.007 23.333 3 ? r_dihedral_angle_2_deg ? ?
'X-RAY DIFFRACTION' ? 8.865 15.000 5 ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? 0.132 0.200 6 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.009 0.020 59 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.001 0.020 17 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? 5.773 3.000 88 ? r_rigid_bond_restr ? ?
'X-RAY DIFFRACTION' ? 2.030 5.000 90 ? r_sphericity_bonded ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 1.0020
_refine_ls_shell.d_res_low 1.0280
_refine_ls_shell.number_reflns_all 47
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 5
_refine_ls_shell.number_reflns_R_work 42
_refine_ls_shell.percent_reflns_obs 35.0700
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.1870
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.1320
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5WHP
_struct.title
'Crystal structure of the segment, NFGTFS, from the A315T familial variant of the low complexity domain of TDP-43, residues 312-317'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5WHP
_struct_keywords.text 'Amyloid, LARKS, TDP-43, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code TADBP_HUMAN
_struct_ref.pdbx_db_accession Q13148
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code NFGAFS
_struct_ref.pdbx_align_begin 312
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 5WHP
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q13148
_struct_ref_seq.db_align_beg 312
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 317
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 312
_struct_ref_seq.pdbx_auth_seq_align_end 317
#
_struct_ref_seq_dif.align_id 1
_struct_ref_seq_dif.pdbx_pdb_id_code 5WHP
_struct_ref_seq_dif.mon_id THR
_struct_ref_seq_dif.pdbx_pdb_strand_id A
_struct_ref_seq_dif.seq_num 4
_struct_ref_seq_dif.pdbx_pdb_ins_code ?
_struct_ref_seq_dif.pdbx_seq_db_name UNP
_struct_ref_seq_dif.pdbx_seq_db_accession_code Q13148
_struct_ref_seq_dif.db_mon_id ALA
_struct_ref_seq_dif.pdbx_seq_db_seq_num 315
_struct_ref_seq_dif.details 'engineered mutation'
_struct_ref_seq_dif.pdbx_auth_seq_num 315
_struct_ref_seq_dif.pdbx_ordinal 1
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details decameric
_pdbx_struct_assembly.oligomeric_count 10
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.6800000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 2_625 -x+1,y-5/2,-z -1.0000000000 0.0000000000 0.0000000000 15.3300000000 0.0000000000
1.0000000000 0.0000000000 -12.1000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
7 'crystal symmetry operation' 2_635 -x+1,y-3/2,-z -1.0000000000 0.0000000000 0.0000000000 15.3300000000 0.0000000000
1.0000000000 0.0000000000 -7.2600000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
8 'crystal symmetry operation' 2_645 -x+1,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 15.3300000000 0.0000000000
1.0000000000 0.0000000000 -2.4200000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
9 'crystal symmetry operation' 2_655 -x+1,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 15.3300000000 0.0000000000
1.0000000000 0.0000000000 2.4200000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
10 'crystal symmetry operation' 2_665 -x+1,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 15.3300000000 0.0000000000
1.0000000000 0.0000000000 7.2600000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ASN N N N N 14
ASN CA C N S 15
ASN C C N N 16
ASN O O N N 17
ASN CB C N N 18
ASN CG C N N 19
ASN OD1 O N N 20
ASN ND2 N N N 21
ASN OXT O N N 22
ASN H H N N 23
ASN H2 H N N 24
ASN HA H N N 25
ASN HB2 H N N 26
ASN HB3 H N N 27
ASN HD21 H N N 28
ASN HD22 H N N 29
ASN HXT H N N 30
GLY N N N N 31
GLY CA C N N 32
GLY C C N N 33
GLY O O N N 34
GLY OXT O N N 35
GLY H H N N 36
GLY H2 H N N 37
GLY HA2 H N N 38
GLY HA3 H N N 39
GLY HXT H N N 40
HOH O O N N 41
HOH H1 H N N 42
HOH H2 H N N 43
PHE N N N N 44
PHE CA C N S 45
PHE C C N N 46
PHE O O N N 47
PHE CB C N N 48
PHE CG C Y N 49
PHE CD1 C Y N 50
PHE CD2 C Y N 51
PHE CE1 C Y N 52
PHE CE2 C Y N 53
PHE CZ C Y N 54
PHE OXT O N N 55
PHE H H N N 56
PHE H2 H N N 57
PHE HA H N N 58
PHE HB2 H N N 59
PHE HB3 H N N 60
PHE HD1 H N N 61
PHE HD2 H N N 62
PHE HE1 H N N 63
PHE HE2 H N N 64
PHE HZ H N N 65
PHE HXT H N N 66
SER N N N N 67
SER CA C N S 68
SER C C N N 69
SER O O N N 70
SER CB C N N 71
SER OG O N N 72
SER OXT O N N 73
SER H H N N 74
SER H2 H N N 75
SER HA H N N 76
SER HB2 H N N 77
SER HB3 H N N 78
SER HG H N N 79
SER HXT H N N 80
THR N N N N 81
THR CA C N S 82
THR C C N N 83
THR O O N N 84
THR CB C N R 85
THR OG1 O N N 86
THR CG2 C N N 87
THR OXT O N N 88
THR H H N N 89
THR H2 H N N 90
THR HA H N N 91
THR HB H N N 92
THR HG1 H N N 93
THR HG21 H N N 94
THR HG22 H N N 95
THR HG23 H N N 96
THR HXT H N N 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ASN N CA sing N N 13
ASN N H sing N N 14
ASN N H2 sing N N 15
ASN CA C sing N N 16
ASN CA CB sing N N 17
ASN CA HA sing N N 18
ASN C O doub N N 19
ASN C OXT sing N N 20
ASN CB CG sing N N 21
ASN CB HB2 sing N N 22
ASN CB HB3 sing N N 23
ASN CG OD1 doub N N 24
ASN CG ND2 sing N N 25
ASN ND2 HD21 sing N N 26
ASN ND2 HD22 sing N N 27
ASN OXT HXT sing N N 28
GLY N CA sing N N 29
GLY N H sing N N 30
GLY N H2 sing N N 31
GLY CA C sing N N 32
GLY CA HA2 sing N N 33
GLY CA HA3 sing N N 34
GLY C O doub N N 35
GLY C OXT sing N N 36
GLY OXT HXT sing N N 37
HOH O H1 sing N N 38
HOH O H2 sing N N 39
PHE N CA sing N N 40
PHE N H sing N N 41
PHE N H2 sing N N 42
PHE CA C sing N N 43
PHE CA CB sing N N 44
PHE CA HA sing N N 45
PHE C O doub N N 46
PHE C OXT sing N N 47
PHE CB CG sing N N 48
PHE CB HB2 sing N N 49
PHE CB HB3 sing N N 50
PHE CG CD1 doub Y N 51
PHE CG CD2 sing Y N 52
PHE CD1 CE1 sing Y N 53
PHE CD1 HD1 sing N N 54
PHE CD2 CE2 doub Y N 55
PHE CD2 HD2 sing N N 56
PHE CE1 CZ doub Y N 57
PHE CE1 HE1 sing N N 58
PHE CE2 CZ sing Y N 59
PHE CE2 HE2 sing N N 60
PHE CZ HZ sing N N 61
PHE OXT HXT sing N N 62
SER N CA sing N N 63
SER N H sing N N 64
SER N H2 sing N N 65
SER CA C sing N N 66
SER CA CB sing N N 67
SER CA HA sing N N 68
SER C O doub N N 69
SER C OXT sing N N 70
SER CB OG sing N N 71
SER CB HB2 sing N N 72
SER CB HB3 sing N N 73
SER OG HG sing N N 74
SER OXT HXT sing N N 75
THR N CA sing N N 76
THR N H sing N N 77
THR N H2 sing N N 78
THR CA C sing N N 79
THR CA CB sing N N 80
THR CA HA sing N N 81
THR C O doub N N 82
THR C OXT sing N N 83
THR CB OG1 sing N N 84
THR CB CG2 sing N N 85
THR CB HB sing N N 86
THR OG1 HG1 sing N N 87
THR CG2 HG21 sing N N 88
THR CG2 HG22 sing N N 89
THR CG2 HG23 sing N N 90
THR OXT HXT sing N N 91
#
_pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number 'NIH NIA AG029430'
_pdbx_audit_support.ordinal 1
#
_atom_sites.entry_id 5WHP
_atom_sites.fract_transf_matrix[1][1] 0.065232
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.007904
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.206612
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.042737
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASN A 1 1 ? 5.304 -1.135 9.814 1.00 2.00 ? 312 ASN A N 1
ATOM 2 C CA . ASN A 1 1 ? 6.110 -0.420 8.785 1.00 2.00 ? 312 ASN A CA 1
ATOM 3 C C . ASN A 1 1 ? 6.009 -1.152 7.462 1.00 2.00 ? 312 ASN A C 1
ATOM 4 O O . ASN A 1 1 ? 5.884 -2.379 7.402 1.00 2.00 ? 312 ASN A O 1
ATOM 5 C CB . ASN A 1 1 ? 7.575 -0.303 9.201 1.00 2.18 ? 312 ASN A CB 1
ATOM 6 C CG . ASN A 1 1 ? 7.792 0.820 10.222 1.00 2.27 ? 312 ASN A CG 1
ATOM 7 O OD1 . ASN A 1 1 ? 6.837 1.361 10.745 1.00 2.24 ? 312 ASN A OD1 1
ATOM 8 N ND2 . ASN A 1 1 ? 9.025 1.249 10.408 1.00 3.89 ? 312 ASN A ND2 1
ATOM 9 N N . PHE A 1 2 ? 6.079 -0.357 6.390 1.00 2.00 ? 313 PHE A N 1
ATOM 10 C CA . PHE A 1 2 ? 6.055 -0.871 4.992 1.00 2.00 ? 313 PHE A CA 1
ATOM 11 C C . PHE A 1 2 ? 7.162 -0.164 4.236 1.00 2.00 ? 313 PHE A C 1
ATOM 12 O O . PHE A 1 2 ? 7.218 1.060 4.184 1.00 2.00 ? 313 PHE A O 1
ATOM 13 C CB . PHE A 1 2 ? 4.710 -0.522 4.365 1.00 2.00 ? 313 PHE A CB 1
ATOM 14 C CG . PHE A 1 2 ? 4.518 -1.086 2.962 1.00 2.00 ? 313 PHE A CG 1
ATOM 15 C CD1 . PHE A 1 2 ? 5.188 -0.531 1.882 1.00 2.16 ? 313 PHE A CD1 1
ATOM 16 C CD2 . PHE A 1 2 ? 3.670 -2.102 2.720 1.00 2.00 ? 313 PHE A CD2 1
ATOM 17 C CE1 . PHE A 1 2 ? 5.006 -1.038 0.611 1.00 2.04 ? 313 PHE A CE1 1
ATOM 18 C CE2 . PHE A 1 2 ? 3.483 -2.616 1.449 1.00 2.13 ? 313 PHE A CE2 1
ATOM 19 C CZ . PHE A 1 2 ? 4.169 -2.064 0.391 1.00 2.26 ? 313 PHE A CZ 1
ATOM 20 N N . GLY A 1 3 ? 8.090 -0.939 3.649 1.00 2.00 ? 314 GLY A N 1
ATOM 21 C CA . GLY A 1 3 ? 9.061 -0.327 2.785 1.00 2.00 ? 314 GLY A CA 1
ATOM 22 C C . GLY A 1 3 ? 9.997 0.666 3.465 1.00 2.00 ? 314 GLY A C 1
ATOM 23 O O . GLY A 1 3 ? 10.332 1.700 2.885 1.00 2.22 ? 314 GLY A O 1
ATOM 24 N N . THR A 1 4 ? 10.403 0.358 4.695 1.00 2.00 ? 315 THR A N 1
ATOM 25 C CA . THR A 1 4 ? 11.239 1.228 5.499 1.00 2.00 ? 315 THR A CA 1
ATOM 26 C C . THR A 1 4 ? 12.638 0.647 5.653 1.00 2.00 ? 315 THR A C 1
ATOM 27 O O . THR A 1 4 ? 12.838 -0.564 5.558 1.00 2.00 ? 315 THR A O 1
ATOM 28 C CB . THR A 1 4 ? 10.599 1.464 6.885 1.00 2.00 ? 315 THR A CB 1
ATOM 29 O OG1 . THR A 1 4 ? 10.499 0.215 7.599 1.00 2.25 ? 315 THR A OG1 1
ATOM 30 C CG2 . THR A 1 4 ? 9.207 2.070 6.805 1.00 2.00 ? 315 THR A CG2 1
ATOM 31 N N . PHE A 1 5 ? 13.556 1.548 5.996 1.00 2.00 ? 316 PHE A N 1
ATOM 32 C CA . PHE A 1 5 ? 14.967 1.228 6.175 1.00 2.00 ? 316 PHE A CA 1
ATOM 33 C C . PHE A 1 5 ? 15.435 1.817 7.493 1.00 2.00 ? 316 PHE A C 1
ATOM 34 O O . PHE A 1 5 ? 15.243 3.019 7.758 1.00 2.00 ? 316 PHE A O 1
ATOM 35 C CB . PHE A 1 5 ? 15.781 1.874 5.052 1.00 2.00 ? 316 PHE A CB 1
ATOM 36 C CG . PHE A 1 5 ? 15.415 1.323 3.703 1.00 2.00 ? 316 PHE A CG 1
ATOM 37 C CD1 . PHE A 1 5 ? 14.326 1.809 3.002 1.00 2.00 ? 316 PHE A CD1 1
ATOM 38 C CD2 . PHE A 1 5 ? 16.160 0.268 3.138 1.00 2.00 ? 316 PHE A CD2 1
ATOM 39 C CE1 . PHE A 1 5 ? 13.955 1.254 1.791 1.00 2.10 ? 316 PHE A CE1 1
ATOM 40 C CE2 . PHE A 1 5 ? 15.816 -0.258 1.905 1.00 2.16 ? 316 PHE A CE2 1
ATOM 41 C CZ . PHE A 1 5 ? 14.703 0.222 1.256 1.00 2.06 ? 316 PHE A CZ 1
ATOM 42 N N . SER A 1 6 ? 16.060 1.001 8.318 1.00 2.37 ? 317 SER A N 1
ATOM 43 C CA . SER A 1 6 ? 16.634 1.427 9.585 1.00 3.14 ? 317 SER A CA 1
ATOM 44 C C . SER A 1 6 ? 17.860 0.536 9.928 1.00 4.40 ? 317 SER A C 1
ATOM 45 O O . SER A 1 6 ? 18.163 -0.384 9.158 1.00 3.59 ? 317 SER A O 1
ATOM 46 C CB . SER A 1 6 ? 15.615 1.407 10.621 1.00 3.82 ? 317 SER A CB 1
ATOM 47 O OG . SER A 1 6 ? 15.110 0.163 10.861 1.00 5.20 ? 317 SER A OG 1
ATOM 48 O OXT . SER A 1 6 ? 18.478 0.830 10.986 1.00 6.30 ? 317 SER A OXT 1
HETATM 49 O O . HOH B 2 . ? 12.894 4.106 8.849 1.00 2.95 ? 101 HOH A O 1
HETATM 50 O O . HOH B 2 . ? 18.494 1.760 6.921 1.00 36.25 ? 102 HOH A O 1
HETATM 51 O O . HOH B 2 . ? 12.085 1.756 10.018 1.00 5.06 ? 103 HOH A O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . ASN A 1 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 312 ASN A N
2 C CA . ASN A 1 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 312 ASN A CA
3 C C . ASN A 1 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 312 ASN A C
4 O O . ASN A 1 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 312 ASN A O
5 C CB . ASN A 1 ? 0.0253 0.0312 0.0261 -0.0003 0.0001 -0.0021 312 ASN A CB
6 C CG . ASN A 1 ? 0.0274 0.0335 0.0253 -0.0041 0.0001 -0.0002 312 ASN A CG
7 O OD1 . ASN A 1 ? 0.0312 0.0267 0.0271 0.0028 -0.0032 -0.0015 312 ASN A OD1
8 N ND2 . ASN A 1 ? 0.0372 0.0627 0.0476 -0.0048 -0.0078 -0.0201 312 ASN A ND2
9 N N . PHE A 2 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 313 PHE A N
10 C CA . PHE A 2 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 313 PHE A CA
11 C C . PHE A 2 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 313 PHE A C
12 O O . PHE A 2 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 313 PHE A O
13 C CB . PHE A 2 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 313 PHE A CB
14 C CG . PHE A 2 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 313 PHE A CG
15 C CD1 . PHE A 2 ? 0.0286 0.0276 0.0259 -0.0027 -0.0013 0.0011 313 PHE A CD1
16 C CD2 . PHE A 2 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 313 PHE A CD2
17 C CE1 . PHE A 2 ? 0.0253 0.0267 0.0253 0.0001 0.0000 0.0000 313 PHE A CE1
18 C CE2 . PHE A 2 ? 0.0253 0.0276 0.0279 0.0003 -0.0003 -0.0024 313 PHE A CE2
19 C CZ . PHE A 2 ? 0.0263 0.0320 0.0275 0.0025 -0.0015 -0.0039 313 PHE A CZ
20 N N . GLY A 3 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 314 GLY A N
21 C CA . GLY A 3 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 314 GLY A CA
22 C C . GLY A 3 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 314 GLY A C
23 O O . GLY A 3 ? 0.0306 0.0283 0.0254 -0.0039 -0.0006 0.0004 314 GLY A O
24 N N . THR A 4 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 315 THR A N
25 C CA . THR A 4 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 315 THR A CA
26 C C . THR A 4 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 315 THR A C
27 O O . THR A 4 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 315 THR A O
28 C CB . THR A 4 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 315 THR A CB
29 O OG1 . THR A 4 ? 0.0314 0.0271 0.0267 0.0033 0.0029 0.0016 315 THR A OG1
30 C CG2 . THR A 4 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 315 THR A CG2
31 N N . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A N
32 C CA . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A CA
33 C C . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A C
34 O O . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A O
35 C CB . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A CB
36 C CG . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A CG
37 C CD1 . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A CD1
38 C CD2 . PHE A 5 ? 0.0253 0.0253 0.0253 0.0000 0.0000 0.0000 316 PHE A CD2
39 C CE1 . PHE A 5 ? 0.0253 0.0278 0.0264 0.0000 0.0000 0.0017 316 PHE A CE1
40 C CE2 . PHE A 5 ? 0.0282 0.0257 0.0281 -0.0011 0.0028 -0.0011 316 PHE A CE2
41 C CZ . PHE A 5 ? 0.0262 0.0263 0.0254 -0.0009 -0.0003 0.0003 316 PHE A CZ
42 N N . SER A 6 ? 0.0350 0.0256 0.0293 0.0016 -0.0062 -0.0010 317 SER A N
43 C CA . SER A 6 ? 0.0567 0.0264 0.0359 -0.0059 -0.0182 0.0034 317 SER A CA
44 C C . SER A 6 ? 0.0682 0.0550 0.0439 0.0138 -0.0234 -0.0052 317 SER A C
45 O O . SER A 6 ? 0.0297 0.0520 0.0546 0.0081 -0.0089 -0.0049 317 SER A O
46 C CB . SER A 6 ? 0.0580 0.0395 0.0477 0.0149 -0.0101 -0.0017 317 SER A CB
47 O OG . SER A 6 ? 0.0839 0.0649 0.0487 0.0096 0.0121 0.0026 317 SER A OG
48 O OXT . SER A 6 ? 0.0924 0.0757 0.0711 0.0344 -0.0418 -0.0099 317 SER A OXT
49 O O . HOH B . ? 0.0414 0.0388 0.0319 0.0117 0.0100 0.0086 101 HOH A O
50 O O . HOH B . ? 0.3747 0.5204 0.4819 -0.0522 -0.0836 0.0763 102 HOH A O
51 O O . HOH B . ? 0.0731 0.0725 0.0466 -0.0152 0.0007 -0.0015 103 HOH A O
#