data_5WHN
#
_entry.id 5WHN
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5WHN pdb_00005whn 10.2210/pdb5whn/pdb
WWPDB D_1000229038 ? ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5WHN
_pdbx_database_status.recvd_initial_deposition_date 2017-07-17
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Guenther, E.L.' 1 ?
'Sawaya, M.R.' 2 ?
'Eisenberg, D.S.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nat. Struct. Mol. Biol.'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1545-9985
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 25
_citation.language ?
_citation.page_first 463
_citation.page_last 471
_citation.title
'Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.'
_citation.year 2018
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1038/s41594-018-0064-2
_citation.pdbx_database_id_PubMed 29786080
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Guenther, E.L.' 1 ?
primary 'Cao, Q.' 2 ?
primary 'Trinh, H.' 3 ?
primary 'Lu, J.' 4 ?
primary 'Sawaya, M.R.' 5 ?
primary 'Cascio, D.' 6 ?
primary 'Boyer, D.R.' 7 ?
primary 'Rodriguez, J.A.' 8 ?
primary 'Hughes, M.P.' 9 ?
primary 'Eisenberg, D.S.' 10 ?
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 5WHN
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 13.820
_cell.length_a_esd ?
_cell.length_b 4.850
_cell.length_b_esd ?
_cell.length_c 46.740
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5WHN
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description 'Segment of TAR DNA-binding protein 43'
_entity.formula_weight 641.673
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment 'UNP residues 312-317'
_entity.details ?
#
_entity_name_com.entity_id 1
_entity_name_com.name TDP-43
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code NFGAFS
_entity_poly.pdbx_seq_one_letter_code_can NFGAFS
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ASN n
1 2 PHE n
1 3 GLY n
1 4 ALA n
1 5 PHE n
1 6 SER n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details 'Synthetic peptide NFGAFS corresponding tosegment 312-317 of TDP-43'
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code TADBP_HUMAN
_struct_ref.pdbx_db_accession Q13148
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code NFGAFS
_struct_ref.pdbx_align_begin 312
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 5WHN
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q13148
_struct_ref_seq.db_align_beg 312
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 317
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 312
_struct_ref_seq.pdbx_auth_seq_align_end 317
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5WHN
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 4.2
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '100mM phosphate/citrate 4.2, 40% ethanol, 5% PEG 1000'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2014-06-20
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9791
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.9791
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate 4.490
_reflns.entry_id 5WHN
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.100
_reflns.d_resolution_low 13.253
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1447
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3.000
_reflns.percent_possible_obs 94.000
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 8.299
_reflns.pdbx_Rmerge_I_obs 0.172
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 9.650
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.955
_reflns.pdbx_scaling_rejects 11
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.184
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 12008
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.991
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.100 1.140 ? 2.520 ? ? ? ? 123 75.900 ? ? ? ? 0.726 ? ? ? ? ? ? ? ? 6.374 ? ? ? ? 0.789 ? ? 1 1 0.823 ?
1.140 1.190 ? 3.850 ? ? ? ? 142 90.400 ? ? ? ? 0.517 ? ? ? ? ? ? ? ? 7.535 ? ? ? ? 0.553 ? ? 2 1 0.909 ?
1.190 1.240 ? 6.020 ? ? ? ? 119 83.800 ? ? ? ? 0.423 ? ? ? ? ? ? ? ? 9.681 ? ? ? ? 0.448 ? ? 3 1 0.941 ?
1.240 1.300 ? 7.060 ? ? ? ? 124 100.000 ? ? ? ? 0.359 ? ? ? ? ? ? ? ? 9.347 ? ? ? ? 0.383 ? ? 4 1 0.963 ?
1.300 1.370 ? 7.470 ? ? ? ? 125 99.200 ? ? ? ? 0.332 ? ? ? ? ? ? ? ? 9.376 ? ? ? ? 0.352 ? ? 5 1 0.958 ?
1.370 1.450 ? 8.660 ? ? ? ? 127 100.000 ? ? ? ? 0.284 ? ? ? ? ? ? ? ? 8.961 ? ? ? ? 0.303 ? ? 6 1 0.935 ?
1.450 1.550 ? 8.980 ? ? ? ? 127 98.400 ? ? ? ? 0.203 ? ? ? ? ? ? ? ? 7.921 ? ? ? ? 0.218 ? ? 7 1 0.988 ?
1.550 1.680 ? 10.780 ? ? ? ? 108 94.700 ? ? ? ? 0.182 ? ? ? ? ? ? ? ? 8.167 ? ? ? ? 0.196 ? ? 8 1 0.983 ?
1.680 1.840 ? 13.690 ? ? ? ? 91 97.800 ? ? ? ? 0.153 ? ? ? ? ? ? ? ? 8.879 ? ? ? ? 0.164 ? ? 9 1 0.964 ?
1.840 2.060 ? 14.980 ? ? ? ? 92 100.000 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 9.043 ? ? ? ? 0.127 ? ? 10 1 0.993 ?
2.060 2.380 ? 16.290 ? ? ? ? 99 100.000 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 7.939 ? ? ? ? 0.120 ? ? 11 1 0.990 ?
2.380 2.910 ? 16.970 ? ? ? ? 70 98.600 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 7.229 ? ? ? ? 0.106 ? ? 12 1 0.992 ?
2.910 4.110 ? 18.550 ? ? ? ? 62 100.000 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? 7.968 ? ? ? ? 0.099 ? ? 13 1 0.996 ?
4.110 13.253 ? 15.950 ? ? ? ? 38 92.700 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 5.763 ? ? ? ? 0.103 ? ? 14 1 0.989 ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 8.390
_refine.B_iso_mean 4.5500
_refine.B_iso_min 3.060
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5WHN
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.100
_refine.ls_d_res_low 13.2530
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 1445
_refine.ls_number_reflns_R_free 145
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 93.8900
_refine.ls_percent_reflns_R_free 10.0300
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1360
_refine.ls_R_factor_R_free 0.1601
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1334
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.380
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 3DGJ
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 14.3000
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.0700
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.d_res_high 1.100
_refine_hist.d_res_low 13.2530
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 46
_refine_hist.pdbx_number_residues_total 6
_refine_hist.pdbx_number_atoms_protein 46
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.006 ? 52 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 0.950 ? 70 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.100 ? 6 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.005 ? 10 ? f_plane_restr ? ?
'X-RAY DIFFRACTION' ? 12.682 ? 16 ? f_dihedral_angle_d ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 1.0995
_refine_ls_shell.d_res_low 13.2538
_refine_ls_shell.number_reflns_all 1445
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 145
_refine_ls_shell.number_reflns_R_work 1300
_refine_ls_shell.percent_reflns_obs 94.0000
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.1601
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.1334
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 1
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5WHN
_struct.title
'Crystal structure of the segment, NFGAFS, from the low complexity domain of TDP-43, residues 312-317'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5WHN
_struct_keywords.text 'Amyloid, LARKS, TDP-43, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_atom_sites.entry_id 5WHN
_atom_sites.fract_transf_matrix[1][1] 0.072359
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.206186
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.021395
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . ASN A 1 1 ? 5.467 0.147 11.125 1.00 5.01 ? 312 ASN A N 1
ATOM 2 C CA . ASN A 1 1 ? 4.096 -0.366 11.145 1.00 3.34 ? 312 ASN A CA 1
ATOM 3 C C . ASN A 1 1 ? 3.396 0.089 9.871 1.00 3.17 ? 312 ASN A C 1
ATOM 4 O O . ASN A 1 1 ? 3.447 1.264 9.536 1.00 4.44 ? 312 ASN A O 1
ATOM 5 C CB . ASN A 1 1 ? 3.352 0.189 12.369 1.00 4.07 ? 312 ASN A CB 1
ATOM 6 C CG . ASN A 1 1 ? 1.992 -0.439 12.552 1.00 5.26 ? 312 ASN A CG 1
ATOM 7 O OD1 . ASN A 1 1 ? 1.858 -1.660 12.569 1.00 6.90 ? 312 ASN A OD1 1
ATOM 8 N ND2 . ASN A 1 1 ? 0.966 0.392 12.668 1.00 5.63 ? 312 ASN A ND2 1
ATOM 9 N N . PHE A 1 2 ? 2.764 -0.836 9.159 1.00 3.15 ? 313 PHE A N 1
ATOM 10 C CA . PHE A 1 2 ? 2.137 -0.535 7.881 1.00 3.08 ? 313 PHE A CA 1
ATOM 11 C C . PHE A 1 2 ? 0.763 -1.169 7.835 1.00 3.11 ? 313 PHE A C 1
ATOM 12 O O . PHE A 1 2 ? 0.639 -2.385 7.986 1.00 3.48 ? 313 PHE A O 1
ATOM 13 C CB . PHE A 1 2 ? 2.996 -1.087 6.732 1.00 3.06 ? 313 PHE A CB 1
ATOM 14 C CG . PHE A 1 2 ? 2.428 -0.817 5.358 1.00 3.06 ? 313 PHE A CG 1
ATOM 15 C CD1 . PHE A 1 2 ? 1.381 -1.589 4.859 1.00 3.79 ? 313 PHE A CD1 1
ATOM 16 C CD2 . PHE A 1 2 ? 2.921 0.211 4.580 1.00 3.43 ? 313 PHE A CD2 1
ATOM 17 C CE1 . PHE A 1 2 ? 0.839 -1.340 3.604 1.00 4.18 ? 313 PHE A CE1 1
ATOM 18 C CE2 . PHE A 1 2 ? 2.400 0.463 3.322 1.00 5.09 ? 313 PHE A CE2 1
ATOM 19 C CZ . PHE A 1 2 ? 1.353 -0.306 2.837 1.00 5.34 ? 313 PHE A CZ 1
ATOM 20 N N . GLY A 1 3 ? -0.261 -0.353 7.617 1.00 3.10 ? 314 GLY A N 1
ATOM 21 C CA . GLY A 1 3 ? -1.612 -0.855 7.446 1.00 3.54 ? 314 GLY A CA 1
ATOM 22 C C . GLY A 1 3 ? -2.261 -0.266 6.209 1.00 4.63 ? 314 GLY A C 1
ATOM 23 O O . GLY A 1 3 ? -2.218 0.951 5.998 1.00 5.96 ? 314 GLY A O 1
ATOM 24 N N . ALA A 1 4 ? -2.836 -1.130 5.381 1.00 3.09 ? 315 ALA A N 1
ATOM 25 C CA . ALA A 1 4 ? -3.592 -0.699 4.215 1.00 3.78 ? 315 ALA A CA 1
ATOM 26 C C . ALA A 1 4 ? -4.900 -1.492 4.185 1.00 3.24 ? 315 ALA A C 1
ATOM 27 O O . ALA A 1 4 ? -4.876 -2.728 4.220 1.00 3.85 ? 315 ALA A O 1
ATOM 28 C CB . ALA A 1 4 ? -2.790 -0.926 2.933 1.00 4.63 ? 315 ALA A CB 1
ATOM 29 N N . PHE A 1 5 ? -6.034 -0.799 4.106 1.00 3.16 ? 316 PHE A N 1
ATOM 30 C CA . PHE A 1 5 ? -7.332 -1.486 4.126 1.00 3.40 ? 316 PHE A CA 1
ATOM 31 C C . PHE A 1 5 ? -7.415 -2.434 5.318 1.00 3.37 ? 316 PHE A C 1
ATOM 32 O O . PHE A 1 5 ? -7.852 -3.574 5.198 1.00 4.45 ? 316 PHE A O 1
ATOM 33 C CB . PHE A 1 5 ? -7.568 -2.211 2.796 1.00 4.82 ? 316 PHE A CB 1
ATOM 34 C CG . PHE A 1 5 ? -7.662 -1.265 1.636 1.00 3.83 ? 316 PHE A CG 1
ATOM 35 C CD1 . PHE A 1 5 ? -8.889 -0.716 1.280 1.00 4.06 ? 316 PHE A CD1 1
ATOM 36 C CD2 . PHE A 1 5 ? -6.524 -0.872 0.938 1.00 4.39 ? 316 PHE A CD2 1
ATOM 37 C CE1 . PHE A 1 5 ? -8.985 0.190 0.239 1.00 5.36 ? 316 PHE A CE1 1
ATOM 38 C CE2 . PHE A 1 5 ? -6.615 0.043 -0.101 1.00 5.05 ? 316 PHE A CE2 1
ATOM 39 C CZ . PHE A 1 5 ? -7.851 0.568 -0.456 1.00 4.81 ? 316 PHE A CZ 1
ATOM 40 N N . SER A 1 6 ? -7.004 -1.935 6.479 1.00 4.30 ? 317 SER A N 1
ATOM 41 C CA A SER A 1 6 ? -6.869 -2.758 7.679 0.50 5.09 ? 317 SER A CA 1
ATOM 42 C CA B SER A 1 6 ? -6.921 -2.768 7.675 0.50 4.89 ? 317 SER A CA 1
ATOM 43 C C . SER A 1 6 ? -7.165 -1.949 8.923 1.00 5.71 ? 317 SER A C 1
ATOM 44 O O . SER A 1 6 ? -7.479 -0.767 8.816 1.00 8.39 ? 317 SER A O 1
ATOM 45 C CB A SER A 1 6 ? -5.449 -3.321 7.791 0.50 6.46 ? 317 SER A CB 1
ATOM 46 C CB B SER A 1 6 ? -5.545 -3.432 7.777 0.50 6.92 ? 317 SER A CB 1
ATOM 47 O OG A SER A 1 6 ? -5.206 -4.290 6.787 0.50 5.94 ? 317 SER A OG 1
ATOM 48 O OG B SER A 1 6 ? -4.520 -2.468 7.904 0.50 6.82 ? 317 SER A OG 1
ATOM 49 O OXT A SER A 1 6 ? -7.079 -2.460 10.051 0.50 6.09 ? 317 SER A OXT 1
ATOM 50 O OXT B SER A 1 6 ? -7.041 -2.451 10.051 0.50 5.96 ? 317 SER A OXT 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . ASN A 1 ? 0.0630 0.0567 0.0706 0.0063 -0.0099 0.0050 312 ASN A N
2 C CA . ASN A 1 ? 0.0418 0.0386 0.0464 0.0050 -0.0092 0.0048 312 ASN A CA
3 C C . ASN A 1 ? 0.0409 0.0349 0.0447 0.0047 -0.0088 0.0032 312 ASN A C
4 O O . ASN A 1 ? 0.0565 0.0502 0.0621 0.0058 -0.0104 0.0015 312 ASN A O
5 C CB . ASN A 1 ? 0.0486 0.0539 0.0523 0.0058 -0.0110 0.0027 312 ASN A CB
6 C CG . ASN A 1 ? 0.0631 0.0728 0.0639 0.0042 -0.0101 0.0031 312 ASN A CG
7 O OD1 . ASN A 1 ? 0.0844 0.0932 0.0844 0.0022 -0.0088 0.0066 312 ASN A OD1
8 N ND2 . ASN A 1 ? 0.0662 0.0809 0.0667 0.0050 -0.0112 -0.0007 312 ASN A ND2
9 N N . PHE A 2 ? 0.0419 0.0341 0.0438 0.0030 -0.0070 0.0041 313 PHE A N
10 C CA . PHE A 2 ? 0.0420 0.0321 0.0427 0.0024 -0.0064 0.0029 313 PHE A CA
11 C C . PHE A 2 ? 0.0426 0.0347 0.0410 0.0012 -0.0058 0.0025 313 PHE A C
12 O O . PHE A 2 ? 0.0473 0.0389 0.0458 -0.0001 -0.0046 0.0040 313 PHE A O
13 C CB . PHE A 2 ? 0.0430 0.0289 0.0444 0.0017 -0.0046 0.0037 313 PHE A CB
14 C CG . PHE A 2 ? 0.0437 0.0292 0.0433 0.0008 -0.0040 0.0028 313 PHE A CG
15 C CD1 . PHE A 2 ? 0.0535 0.0393 0.0511 -0.0004 -0.0030 0.0018 313 PHE A CD1
16 C CD2 . PHE A 2 ? 0.0482 0.0336 0.0485 0.0009 -0.0048 0.0034 313 PHE A CD2
17 C CE1 . PHE A 2 ? 0.0589 0.0453 0.0546 -0.0013 -0.0026 0.0010 313 PHE A CE1
18 C CE2 . PHE A 2 ? 0.0694 0.0558 0.0680 -0.0003 -0.0045 0.0034 313 PHE A CE2
19 C CZ . PHE A 2 ? 0.0733 0.0603 0.0691 -0.0013 -0.0034 0.0020 313 PHE A CZ
20 N N . GLY A 3 ? 0.0420 0.0363 0.0394 0.0014 -0.0070 0.0005 314 GLY A N
21 C CA . GLY A 3 ? 0.0476 0.0437 0.0430 0.0003 -0.0065 -0.0002 314 GLY A CA
22 C C . GLY A 3 ? 0.0622 0.0567 0.0569 -0.0000 -0.0070 -0.0016 314 GLY A C
23 O O . GLY A 3 ? 0.0785 0.0732 0.0749 0.0010 -0.0090 -0.0025 314 GLY A O
24 N N . ALA A 4 ? 0.0439 0.0369 0.0368 -0.0015 -0.0054 -0.0015 315 ALA A N
25 C CA . ALA A 4 ? 0.0532 0.0457 0.0448 -0.0021 -0.0059 -0.0025 315 ALA A CA
26 C C . ALA A 4 ? 0.0463 0.0401 0.0366 -0.0031 -0.0053 -0.0036 315 ALA A C
27 O O . ALA A 4 ? 0.0542 0.0471 0.0449 -0.0041 -0.0037 -0.0030 315 ALA A O
28 C CB . ALA A 4 ? 0.0649 0.0551 0.0558 -0.0028 -0.0046 -0.0018 315 ALA A CB
29 N N . PHE A 5 ? 0.0447 0.0407 0.0347 -0.0030 -0.0068 -0.0051 316 PHE A N
30 C CA . PHE A 5 ? 0.0474 0.0452 0.0365 -0.0041 -0.0063 -0.0061 316 PHE A CA
31 C C . PHE A 5 ? 0.0460 0.0463 0.0359 -0.0047 -0.0052 -0.0048 316 PHE A C
32 O O . PHE A 5 ? 0.0596 0.0594 0.0500 -0.0061 -0.0041 -0.0039 316 PHE A O
33 C CB . PHE A 5 ? 0.0668 0.0620 0.0545 -0.0053 -0.0051 -0.0064 316 PHE A CB
34 C CG . PHE A 5 ? 0.0547 0.0495 0.0413 -0.0054 -0.0065 -0.0068 316 PHE A CG
35 C CD1 . PHE A 5 ? 0.0573 0.0535 0.0436 -0.0056 -0.0082 -0.0080 316 PHE A CD1
36 C CD2 . PHE A 5 ? 0.0623 0.0559 0.0485 -0.0053 -0.0063 -0.0054 316 PHE A CD2
37 C CE1 . PHE A 5 ? 0.0738 0.0701 0.0598 -0.0060 -0.0101 -0.0073 316 PHE A CE1
38 C CE2 . PHE A 5 ? 0.0706 0.0651 0.0562 -0.0059 -0.0080 -0.0044 316 PHE A CE2
39 C CZ . PHE A 5 ? 0.0671 0.0628 0.0527 -0.0063 -0.0101 -0.0051 316 PHE A CZ
40 N N . SER A 6 ? 0.0563 0.0602 0.0470 -0.0037 -0.0059 -0.0046 317 SER A N
41 C CA A SER A 6 ? 0.0648 0.0726 0.0562 -0.0045 -0.0052 -0.0022 317 SER A CA
42 C CA B SER A 6 ? 0.0622 0.0701 0.0536 -0.0045 -0.0052 -0.0022 317 SER A CA
43 C C . SER A 6 ? 0.0698 0.0856 0.0613 -0.0035 -0.0064 -0.0038 317 SER A C
44 O O . SER A 6 ? 0.1031 0.1204 0.0953 -0.0019 -0.0081 -0.0074 317 SER A O
45 C CB A SER A 6 ? 0.0830 0.0870 0.0756 -0.0045 -0.0045 0.0004 317 SER A CB
46 C CB B SER A 6 ? 0.0887 0.0927 0.0813 -0.0047 -0.0044 0.0006 317 SER A CB
47 O OG A SER A 6 ? 0.0779 0.0763 0.0716 -0.0055 -0.0033 0.0011 317 SER A OG
48 O OG B SER A 6 ? 0.0878 0.0909 0.0806 -0.0029 -0.0052 -0.0003 317 SER A OG
49 O OXT A SER A 6 ? 0.0727 0.0943 0.0642 -0.0043 -0.0060 -0.0017 317 SER A OXT
50 O OXT B SER A 6 ? 0.0711 0.0926 0.0626 -0.0043 -0.0060 -0.0016 317 SER A OXT
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ASN 1 312 1 ASN ASN A . n
A 1 2 PHE 2 313 2 PHE PHE A . n
A 1 3 GLY 3 314 3 GLY GLY A . n
A 1 4 ALA 4 315 4 ALA ALA A . n
A 1 5 PHE 5 316 5 PHE PHE A . n
A 1 6 SER 6 317 6 SER SER A . n
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details pentadecameric
_pdbx_struct_assembly.oligomeric_count 15
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.7000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -4.8500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.8500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.7000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 4_455 x-1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000
-1.0000000000 0.0000000000 2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
7 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000
-1.0000000000 0.0000000000 -2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
8 'crystal symmetry operation' 4_435 x-1/2,-y-3/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000
-1.0000000000 0.0000000000 -7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
9 'crystal symmetry operation' 4_465 x-1/2,-y+3/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000
-1.0000000000 0.0000000000 7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
10 'crystal symmetry operation' 4_425 x-1/2,-y-5/2,-z 1.0000000000 0.0000000000 0.0000000000 -6.9100000000 0.0000000000
-1.0000000000 0.0000000000 -12.1250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
11 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000
-1.0000000000 0.0000000000 2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
12 'crystal symmetry operation' 4_545 x+1/2,-y-1/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000
-1.0000000000 0.0000000000 -2.4250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
13 'crystal symmetry operation' 4_535 x+1/2,-y-3/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000
-1.0000000000 0.0000000000 -7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
14 'crystal symmetry operation' 4_565 x+1/2,-y+3/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000
-1.0000000000 0.0000000000 7.2750000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
15 'crystal symmetry operation' 4_525 x+1/2,-y-5/2,-z 1.0000000000 0.0000000000 0.0000000000 6.9100000000 0.0000000000
-1.0000000000 0.0000000000 -12.1250000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2018-04-25
2 'Structure model' 1 1 2018-05-30
3 'Structure model' 1 2 2018-06-06
4 'Structure model' 1 3 2018-06-20
5 'Structure model' 1 4 2019-12-18
6 'Structure model' 1 5 2023-10-04
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
5 4 'Structure model' 'Data collection'
6 4 'Structure model' 'Database references'
7 5 'Structure model' 'Author supporting evidence'
8 6 'Structure model' 'Data collection'
9 6 'Structure model' 'Database references'
10 6 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' citation
4 3 'Structure model' citation_author
5 4 'Structure model' citation
6 5 'Structure model' pdbx_audit_support
7 6 'Structure model' chem_comp_atom
8 6 'Structure model' chem_comp_bond
9 6 'Structure model' database_2
10 6 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.journal_id_ISSN'
5 2 'Structure model' '_citation.pdbx_database_id_DOI'
6 2 'Structure model' '_citation.title'
7 2 'Structure model' '_citation.year'
8 3 'Structure model' '_citation.journal_abbrev'
9 3 'Structure model' '_citation.pdbx_database_id_PubMed'
10 3 'Structure model' '_citation.title'
11 3 'Structure model' '_citation_author.name'
12 4 'Structure model' '_citation.journal_volume'
13 4 'Structure model' '_citation.page_first'
14 4 'Structure model' '_citation.page_last'
15 5 'Structure model' '_pdbx_audit_support.funding_organization'
16 6 'Structure model' '_database_2.pdbx_DOI'
17 6 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x -2.6945
_pdbx_refine_tls.origin_y -1.2041
_pdbx_refine_tls.origin_z 6.5345
_pdbx_refine_tls.T[1][1] 0.0432
_pdbx_refine_tls.T[2][2] 0.0386
_pdbx_refine_tls.T[3][3] 0.0370
_pdbx_refine_tls.T[1][2] -0.0009
_pdbx_refine_tls.T[1][3] -0.0058
_pdbx_refine_tls.T[2][3] -0.0010
_pdbx_refine_tls.L[1][1] 1.3674
_pdbx_refine_tls.L[2][2] 0.2267
_pdbx_refine_tls.L[3][3] 0.1474
_pdbx_refine_tls.L[1][2] 0.1206
_pdbx_refine_tls.L[1][3] 0.4301
_pdbx_refine_tls.L[2][3] 0.0880
_pdbx_refine_tls.S[1][1] -0.0345
_pdbx_refine_tls.S[2][2] -0.0109
_pdbx_refine_tls.S[3][3] 0.0244
_pdbx_refine_tls.S[1][2] -0.0637
_pdbx_refine_tls.S[1][3] -0.0130
_pdbx_refine_tls.S[2][3] -0.0264
_pdbx_refine_tls.S[2][1] -0.0156
_pdbx_refine_tls.S[3][1] 0.0245
_pdbx_refine_tls.S[3][2] -0.0569
#
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_auth_asym_id Z
_pdbx_refine_tls_group.beg_auth_seq_id 1
_pdbx_refine_tls_group.end_auth_asym_id Z
_pdbx_refine_tls_group.end_auth_seq_id 6
_pdbx_refine_tls_group.selection_details all
_pdbx_refine_tls_group.beg_label_asym_id ?
_pdbx_refine_tls_group.beg_label_seq_id ?
_pdbx_refine_tls_group.end_label_asym_id ?
_pdbx_refine_tls_group.end_label_seq_id ?
_pdbx_refine_tls_group.selection ?
#
_phasing.method MR
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_1555 3
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ASN N N N N 14
ASN CA C N S 15
ASN C C N N 16
ASN O O N N 17
ASN CB C N N 18
ASN CG C N N 19
ASN OD1 O N N 20
ASN ND2 N N N 21
ASN OXT O N N 22
ASN H H N N 23
ASN H2 H N N 24
ASN HA H N N 25
ASN HB2 H N N 26
ASN HB3 H N N 27
ASN HD21 H N N 28
ASN HD22 H N N 29
ASN HXT H N N 30
GLY N N N N 31
GLY CA C N N 32
GLY C C N N 33
GLY O O N N 34
GLY OXT O N N 35
GLY H H N N 36
GLY H2 H N N 37
GLY HA2 H N N 38
GLY HA3 H N N 39
GLY HXT H N N 40
PHE N N N N 41
PHE CA C N S 42
PHE C C N N 43
PHE O O N N 44
PHE CB C N N 45
PHE CG C Y N 46
PHE CD1 C Y N 47
PHE CD2 C Y N 48
PHE CE1 C Y N 49
PHE CE2 C Y N 50
PHE CZ C Y N 51
PHE OXT O N N 52
PHE H H N N 53
PHE H2 H N N 54
PHE HA H N N 55
PHE HB2 H N N 56
PHE HB3 H N N 57
PHE HD1 H N N 58
PHE HD2 H N N 59
PHE HE1 H N N 60
PHE HE2 H N N 61
PHE HZ H N N 62
PHE HXT H N N 63
SER N N N N 64
SER CA C N S 65
SER C C N N 66
SER O O N N 67
SER CB C N N 68
SER OG O N N 69
SER OXT O N N 70
SER H H N N 71
SER H2 H N N 72
SER HA H N N 73
SER HB2 H N N 74
SER HB3 H N N 75
SER HG H N N 76
SER HXT H N N 77
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ASN N CA sing N N 13
ASN N H sing N N 14
ASN N H2 sing N N 15
ASN CA C sing N N 16
ASN CA CB sing N N 17
ASN CA HA sing N N 18
ASN C O doub N N 19
ASN C OXT sing N N 20
ASN CB CG sing N N 21
ASN CB HB2 sing N N 22
ASN CB HB3 sing N N 23
ASN CG OD1 doub N N 24
ASN CG ND2 sing N N 25
ASN ND2 HD21 sing N N 26
ASN ND2 HD22 sing N N 27
ASN OXT HXT sing N N 28
GLY N CA sing N N 29
GLY N H sing N N 30
GLY N H2 sing N N 31
GLY CA C sing N N 32
GLY CA HA2 sing N N 33
GLY CA HA3 sing N N 34
GLY C O doub N N 35
GLY C OXT sing N N 36
GLY OXT HXT sing N N 37
PHE N CA sing N N 38
PHE N H sing N N 39
PHE N H2 sing N N 40
PHE CA C sing N N 41
PHE CA CB sing N N 42
PHE CA HA sing N N 43
PHE C O doub N N 44
PHE C OXT sing N N 45
PHE CB CG sing N N 46
PHE CB HB2 sing N N 47
PHE CB HB3 sing N N 48
PHE CG CD1 doub Y N 49
PHE CG CD2 sing Y N 50
PHE CD1 CE1 sing Y N 51
PHE CD1 HD1 sing N N 52
PHE CD2 CE2 doub Y N 53
PHE CD2 HD2 sing N N 54
PHE CE1 CZ doub Y N 55
PHE CE1 HE1 sing N N 56
PHE CE2 CZ sing Y N 57
PHE CE2 HE2 sing N N 58
PHE CZ HZ sing N N 59
PHE OXT HXT sing N N 60
SER N CA sing N N 61
SER N H sing N N 62
SER N H2 sing N N 63
SER CA C sing N N 64
SER CA CB sing N N 65
SER CA HA sing N N 66
SER C O doub N N 67
SER C OXT sing N N 68
SER CB OG sing N N 69
SER CB HB2 sing N N 70
SER CB HB3 sing N N 71
SER OG HG sing N N 72
SER OXT HXT sing N N 73
#
_pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute on Aging (NIH/NIA)'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number 'NIH NIA AG029430'
_pdbx_audit_support.ordinal 1
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3DGJ
_pdbx_initial_refinement_model.details ?
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#