data_5VSG
#
_entry.id 5VSG
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.321
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 5VSG
WWPDB D_1000227908
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5VSG
_pdbx_database_status.recvd_initial_deposition_date 2017-05-11
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Mondal, S.' 1 ?
'Sawaya, M.R.' 2 0000-0003-0874-9043
'Eisenberg, D.S.' 3 ?
'Gazit, E.' 4 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev J.Am.Chem.Soc.
_citation.journal_id_ASTM JACSAT
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1520-5126
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 141
_citation.language ?
_citation.page_first 363
_citation.page_last 369
_citation.title 'Transition of Metastable Cross-alpha Crystals into Cross-beta Fibrils by beta-Turn Flipping.'
_citation.year 2019
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1021/jacs.8b10289
_citation.pdbx_database_id_PubMed 30532955
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mondal, S.' 1 0000-0002-1146-8659
primary 'Jacoby, G.' 2 ?
primary 'Sawaya, M.R.' 3 ?
primary 'Arnon, Z.A.' 4 0000-0003-2915-5930
primary 'Adler-Abramovich, L.' 5 0000-0003-3433-0625
primary 'Rehak, P.' 6 ?
primary 'Vukovic, L.' 7 ?
primary 'Shimon, L.J.W.' 8 0000-0002-7861-9247
primary 'Kral, P.' 9 0000-0003-2992-9027
primary 'Beck, R.' 10 0000-0003-3121-4530
primary 'Gazit, E.' 11 0000-0001-5764-1720
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 93.900
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 5VSG
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 5.343
_cell.length_a_esd ?
_cell.length_b 20.883
_cell.length_b_esd ?
_cell.length_c 16.795
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 2
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5VSG
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Super Helical Repeat Peptide SHR-FF' 741.833 1 ? ? ? ?
2 water nat water 18.015 2 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code 'S(AIB)FS(AIB)F(AIB)'
_entity_poly.pdbx_seq_one_letter_code_can SAFSAFA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 SER n
1 2 AIB n
1 3 PHE n
1 4 SER n
1 5 AIB n
1 6 PHE n
1 7 AIB n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 7
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details 'de novo design'
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 5VSG
_struct_ref.pdbx_db_accession 5VSG
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 5VSG
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 5VSG
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 7
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120
HOH non-polymer . WATER ? 'H2 O' 18.015
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5VSG
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.5
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 50.6
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'BATCH MODE'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.4
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 310
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '5% DMSO, 100 mM HEPES'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS EIGER X 16M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2017-03-05
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.97918
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.97918
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 5VSG
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.100
_reflns.d_resolution_low 100.000
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1367
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 89.200
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 3.600
_reflns.pdbx_Rmerge_I_obs 0.165
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 6.500
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 1.916
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 4946
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.100 1.140 ? ? ? ? ? ? ? 53.500 ? ? ? ? 0.308 ? ? ? ? ? ? ? ? 1.900 ? 1.685 ? ? ? ? ? 1 1 ? ?
1.140 1.180 ? ? ? ? ? ? ? 77.400 ? ? ? ? 0.310 ? ? ? ? ? ? ? ? 2.100 ? 1.571 ? ? ? ? ? 2 1 ? ?
1.180 1.240 ? ? ? ? ? ? ? 90.400 ? ? ? ? 0.333 ? ? ? ? ? ? ? ? 2.900 ? 1.908 ? ? ? ? ? 3 1 ? ?
1.240 1.300 ? ? ? ? ? ? ? 91.200 ? ? ? ? 0.332 ? ? ? ? ? ? ? ? 3.400 ? 1.914 ? ? ? ? ? 4 1 ? ?
1.300 1.390 ? ? ? ? ? ? ? 88.500 ? ? ? ? 0.298 ? ? ? ? ? ? ? ? 3.800 ? 1.710 ? ? ? ? ? 5 1 ? ?
1.390 1.490 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.273 ? ? ? ? ? ? ? ? 3.900 ? 2.064 ? ? ? ? ? 6 1 ? ?
1.490 1.640 ? ? ? ? ? ? ? 98.700 ? ? ? ? 0.260 ? ? ? ? ? ? ? ? 4.300 ? 2.263 ? ? ? ? ? 7 1 ? ?
1.640 1.880 ? ? ? ? ? ? ? 94.400 ? ? ? ? 0.218 ? ? ? ? ? ? ? ? 3.700 ? 2.312 ? ? ? ? ? 8 1 ? ?
1.880 2.370 ? ? ? ? ? ? ? 98.000 ? ? ? ? 0.177 ? ? ? ? ? ? ? ? 4.600 ? 1.881 ? ? ? ? ? 9 1 ? ?
2.370 20.883 ? ? ? ? ? ? ? 97.000 ? ? ? ? 0.123 ? ? ? ? ? ? ? ? 4.200 ? 1.460 ? ? ? ? ? 10 1 ? ?
#
_refine.aniso_B[1][1] -0.1900
_refine.aniso_B[1][2] -0.0000
_refine.aniso_B[1][3] 0.1500
_refine.aniso_B[2][2] 0.1200
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] 0.0500
_refine.B_iso_max 13.420
_refine.B_iso_mean 8.2860
_refine.B_iso_min 6.930
_refine.correlation_coeff_Fo_to_Fc 0.9880
_refine.correlation_coeff_Fo_to_Fc_free 0.9880
_refine.details
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5VSG
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.1000
_refine.ls_d_res_low 16.7600
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 1195
_refine.ls_number_reflns_R_free 163
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 89.3400
_refine.ls_percent_reflns_R_free 12.0000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1169
_refine.ls_R_factor_R_free 0.1342
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.1143
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'AB INITIO PHASING'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.0380
_refine.pdbx_overall_ESU_R_Free 0.0340
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 2
_refine.overall_SU_B 1.4730
_refine.overall_SU_ML 0.0290
_refine.overall_SU_R_Cruickshank_DPI 0.0382
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.d_res_high 1.1000
_refine_hist.d_res_low 16.7600
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 2
_refine_hist.number_atoms_total 55
_refine_hist.pdbx_number_residues_total 7
_refine_hist.pdbx_B_iso_mean_solvent 12.73
_refine_hist.pdbx_number_atoms_protein 53
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.012 0.020 54 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.002 0.020 49 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 1.827 2.138 77 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 0.680 3.000 106 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? 5.379 5.000 6 ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? 16.441 20.000 2 ? r_dihedral_angle_2_deg ? ?
'X-RAY DIFFRACTION' ? 12.293 15.000 4 ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? 0.072 0.200 7 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.007 0.020 60 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.001 0.020 16 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? 0.446 3.000 103 ? r_rigid_bond_restr ? ?
'X-RAY DIFFRACTION' ? 1.865 5.000 104 ? r_sphericity_bonded ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 1.1010
_refine_ls_shell.d_res_low 1.1290
_refine_ls_shell.number_reflns_all 60
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 10
_refine_ls_shell.number_reflns_R_work 50
_refine_ls_shell.percent_reflns_obs 53.5700
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.2030
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.2020
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5VSG
_struct.title 'Fibrils of the super helical repeat peptide, SHR-FF, grown at elevated temperature'
_struct.pdbx_descriptor 'Super Helical Repeat Peptide SHR-FF'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5VSG
_struct_keywords.text 'fibril, de novo design, DE NOVO PROTEIN'
_struct_keywords.pdbx_keywords 'DE NOVO PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale1 covale both ? A SER 1 C ? ? ? 1_555 A AIB 2 N ? ? A SER 1 A AIB 2 1_555 ? ? ? ? ? ? ? 1.332 ?
covale2 covale both ? A AIB 2 C ? ? ? 1_555 A PHE 3 N ? ? A AIB 2 A PHE 3 1_555 ? ? ? ? ? ? ? 1.340 ?
covale3 covale both ? A SER 4 C ? ? ? 1_555 A AIB 5 N ? ? A SER 4 A AIB 5 1_555 ? ? ? ? ? ? ? 1.332 ?
covale4 covale both ? A AIB 5 C ? ? ? 1_555 A PHE 6 N ? ? A AIB 5 A PHE 6 1_555 ? ? ? ? ? ? ? 1.330 ?
covale5 covale both ? A PHE 6 C ? ? ? 1_555 A AIB 7 N ? ? A PHE 6 A AIB 7 1_555 ? ? ? ? ? ? ? 1.335 ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_atom_sites.entry_id 5VSG
_atom_sites.fract_transf_matrix[1][1] 0.187161
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.012756
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.047886
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.059680
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . SER A 1 1 ? 1.958 7.242 12.512 1.00 8.82 ? 1 SER A N 1
ATOM 2 C CA . SER A 1 1 ? 2.006 6.219 13.597 1.00 9.21 ? 1 SER A CA 1
ATOM 3 C C . SER A 1 1 ? 2.885 6.761 14.725 1.00 8.87 ? 1 SER A C 1
ATOM 4 O O . SER A 1 1 ? 3.565 7.774 14.558 1.00 8.04 ? 1 SER A O 1
ATOM 5 C CB . SER A 1 1 ? 2.563 4.887 13.072 1.00 9.66 ? 1 SER A CB 1
ATOM 6 O OG . SER A 1 1 ? 3.977 4.914 13.008 1.00 10.16 ? 1 SER A OG 1
HETATM 7 N N . AIB A 1 2 ? 2.893 6.078 15.869 1.00 8.16 ? 2 AIB A N 1
HETATM 8 C CA . AIB A 1 2 ? 3.708 6.504 17.020 1.00 8.26 ? 2 AIB A CA 1
HETATM 9 C C . AIB A 1 2 ? 3.539 7.999 17.272 1.00 7.66 ? 2 AIB A C 1
HETATM 10 O O . AIB A 1 2 ? 2.409 8.471 17.280 1.00 7.76 ? 2 AIB A O 1
HETATM 11 C CB1 . AIB A 1 2 ? 3.250 5.787 18.277 1.00 8.20 ? 2 AIB A CB1 1
HETATM 12 C CB2 . AIB A 1 2 ? 5.138 6.074 16.753 1.00 8.34 ? 2 AIB A CB2 1
ATOM 13 N N . PHE A 1 3 ? 4.630 8.761 17.425 1.00 7.41 ? 3 PHE A N 1
ATOM 14 C CA . PHE A 1 3 ? 4.572 10.201 17.759 1.00 7.52 ? 3 PHE A CA 1
ATOM 15 C C . PHE A 1 3 ? 4.667 11.107 16.548 1.00 7.95 ? 3 PHE A C 1
ATOM 16 O O . PHE A 1 3 ? 4.710 12.333 16.668 1.00 8.83 ? 3 PHE A O 1
ATOM 17 C CB . PHE A 1 3 ? 5.698 10.538 18.738 1.00 8.04 ? 3 PHE A CB 1
ATOM 18 C CG . PHE A 1 3 ? 5.658 9.687 19.951 1.00 7.82 ? 3 PHE A CG 1
ATOM 19 C CD1 . PHE A 1 3 ? 4.619 9.831 20.815 1.00 9.63 ? 3 PHE A CD1 1
ATOM 20 C CD2 . PHE A 1 3 ? 6.586 8.686 20.182 1.00 8.03 ? 3 PHE A CD2 1
ATOM 21 C CE1 . PHE A 1 3 ? 4.517 9.035 21.929 1.00 9.97 ? 3 PHE A CE1 1
ATOM 22 C CE2 . PHE A 1 3 ? 6.497 7.881 21.295 1.00 9.10 ? 3 PHE A CE2 1
ATOM 23 C CZ . PHE A 1 3 ? 5.458 8.053 22.168 1.00 8.54 ? 3 PHE A CZ 1
ATOM 24 N N . SER A 1 4 ? 4.678 10.500 15.375 1.00 7.69 ? 4 SER A N 1
ATOM 25 C CA . SER A 1 4 ? 4.901 11.237 14.159 1.00 7.58 ? 4 SER A CA 1
ATOM 26 C C . SER A 1 4 ? 3.691 11.992 13.664 1.00 7.25 ? 4 SER A C 1
ATOM 27 O O . SER A 1 4 ? 2.590 11.618 13.966 1.00 8.36 ? 4 SER A O 1
ATOM 28 C CB . SER A 1 4 ? 5.335 10.249 13.109 1.00 6.93 ? 4 SER A CB 1
ATOM 29 O OG . SER A 1 4 ? 6.374 9.465 13.641 1.00 7.87 ? 4 SER A OG 1
HETATM 30 N N . AIB A 1 5 ? 3.920 13.043 12.878 1.00 7.10 ? 5 AIB A N 1
HETATM 31 C CA . AIB A 1 5 ? 2.860 13.764 12.162 1.00 7.26 ? 5 AIB A CA 1
HETATM 32 C C . AIB A 1 5 ? 2.006 12.779 11.370 1.00 7.62 ? 5 AIB A C 1
HETATM 33 O O . AIB A 1 5 ? 0.780 12.868 11.328 1.00 7.95 ? 5 AIB A O 1
HETATM 34 C CB1 . AIB A 1 5 ? 2.056 14.573 13.162 1.00 7.20 ? 5 AIB A CB1 1
HETATM 35 C CB2 . AIB A 1 5 ? 3.484 14.751 11.192 1.00 7.42 ? 5 AIB A CB2 1
ATOM 36 N N . PHE A 1 6 ? 2.669 11.835 10.708 1.00 8.13 ? 6 PHE A N 1
ATOM 37 C CA . PHE A 1 6 ? 2.015 10.737 9.994 1.00 7.66 ? 6 PHE A CA 1
ATOM 38 C C . PHE A 1 6 ? 3.108 9.700 9.778 1.00 7.89 ? 6 PHE A C 1
ATOM 39 O O . PHE A 1 6 ? 4.272 10.028 9.963 1.00 8.00 ? 6 PHE A O 1
ATOM 40 C CB . PHE A 1 6 ? 1.390 11.217 8.673 1.00 7.89 ? 6 PHE A CB 1
ATOM 41 C CG . PHE A 1 6 ? 2.340 11.957 7.810 1.00 8.43 ? 6 PHE A CG 1
ATOM 42 C CD1 . PHE A 1 6 ? 3.029 11.299 6.820 1.00 10.53 ? 6 PHE A CD1 1
ATOM 43 C CD2 . PHE A 1 6 ? 2.583 13.306 8.016 1.00 8.97 ? 6 PHE A CD2 1
ATOM 44 C CE1 . PHE A 1 6 ? 3.934 11.976 6.037 1.00 11.90 ? 6 PHE A CE1 1
ATOM 45 C CE2 . PHE A 1 6 ? 3.492 13.980 7.237 1.00 9.56 ? 6 PHE A CE2 1
ATOM 46 C CZ . PHE A 1 6 ? 4.166 13.315 6.244 1.00 10.33 ? 6 PHE A CZ 1
HETATM 47 N N . AIB A 1 7 ? 2.733 8.462 9.447 1.00 7.63 ? 7 AIB A N 1
HETATM 48 C CA . AIB A 1 7 ? 3.697 7.381 9.174 1.00 7.99 ? 7 AIB A CA 1
HETATM 49 C C . AIB A 1 7 ? 4.664 7.158 10.320 1.00 9.25 ? 7 AIB A C 1
HETATM 50 O O . AIB A 1 7 ? 5.855 7.005 10.140 1.00 9.48 ? 7 AIB A O 1
HETATM 51 O OXT . AIB A 1 7 ? 4.280 7.099 11.486 1.00 9.53 ? 7 AIB A OXT 1
HETATM 52 C CB1 . AIB A 1 7 ? 2.965 6.061 8.914 1.00 8.35 ? 7 AIB A CB1 1
HETATM 53 C CB2 . AIB A 1 7 ? 4.423 7.750 7.901 1.00 8.10 ? 7 AIB A CB2 1
HETATM 54 O O . HOH B 2 . ? 1.741 3.551 16.047 1.00 13.42 ? 101 HOH A O 1
HETATM 55 O O . HOH B 2 . ? 3.395 13.194 18.990 1.00 12.04 ? 102 HOH A O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . SER A 1 ? 0.1064 0.1103 0.1181 -0.0032 -0.0168 -0.0063 1 SER A N
2 C CA . SER A 1 ? 0.1211 0.1136 0.1152 -0.0027 -0.0042 -0.0048 1 SER A CA
3 C C . SER A 1 ? 0.1195 0.1079 0.1092 -0.0009 -0.0050 0.0013 1 SER A C
4 O O . SER A 1 ? 0.1125 0.1043 0.0885 0.0057 0.0053 -0.0018 1 SER A O
5 C CB . SER A 1 ? 0.1305 0.1079 0.1285 -0.0039 -0.0069 -0.0050 1 SER A CB
6 O OG . SER A 1 ? 0.1325 0.1258 0.1276 0.0083 0.0075 -0.0084 1 SER A OG
7 N N . AIB A 2 ? 0.1035 0.0986 0.1079 -0.0016 -0.0001 -0.0020 2 AIB A N
8 C CA . AIB A 2 ? 0.1107 0.0987 0.1044 0.0115 -0.0061 0.0009 2 AIB A CA
9 C C . AIB A 2 ? 0.0985 0.0956 0.0968 0.0066 -0.0013 0.0068 2 AIB A C
10 O O . AIB A 2 ? 0.0986 0.0938 0.1024 0.0084 -0.0107 0.0141 2 AIB A O
11 C CB1 . AIB A 2 ? 0.1021 0.1009 0.1086 -0.0018 -0.0076 0.0019 2 AIB A CB1
12 C CB2 . AIB A 2 ? 0.1044 0.1029 0.1094 0.0041 -0.0080 0.0053 2 AIB A CB2
13 N N . PHE A 3 ? 0.0958 0.0957 0.0899 0.0089 -0.0022 0.0000 3 PHE A N
14 C CA . PHE A 3 ? 0.0968 0.0962 0.0924 0.0012 -0.0015 -0.0021 3 PHE A CA
15 C C . PHE A 3 ? 0.1096 0.0967 0.0956 -0.0213 0.0028 -0.0022 3 PHE A C
16 O O . PHE A 3 ? 0.1239 0.0946 0.1166 -0.0148 -0.0240 0.0017 3 PHE A O
17 C CB . PHE A 3 ? 0.0999 0.1082 0.0973 -0.0057 -0.0015 -0.0067 3 PHE A CB
18 C CG . PHE A 3 ? 0.0953 0.1030 0.0988 -0.0145 -0.0095 -0.0069 3 PHE A CG
19 C CD1 . PHE A 3 ? 0.1233 0.1272 0.1154 0.0214 0.0090 0.0003 3 PHE A CD1
20 C CD2 . PHE A 3 ? 0.1072 0.1045 0.0935 -0.0065 -0.0056 -0.0120 3 PHE A CD2
21 C CE1 . PHE A 3 ? 0.1190 0.1411 0.1187 0.0153 -0.0008 0.0101 3 PHE A CE1
22 C CE2 . PHE A 3 ? 0.1369 0.1041 0.1045 0.0109 -0.0029 -0.0051 3 PHE A CE2
23 C CZ . PHE A 3 ? 0.1029 0.1178 0.1037 -0.0054 -0.0190 -0.0051 3 PHE A CZ
24 N N . SER A 4 ? 0.1045 0.0941 0.0934 -0.0099 0.0003 0.0007 4 SER A N
25 C CA . SER A 4 ? 0.1000 0.0960 0.0920 -0.0031 -0.0001 0.0017 4 SER A CA
26 C C . SER A 4 ? 0.1030 0.0901 0.0824 -0.0046 -0.0019 -0.0006 4 SER A C
27 O O . SER A 4 ? 0.0976 0.1079 0.1119 -0.0039 -0.0028 0.0034 4 SER A O
28 C CB . SER A 4 ? 0.0780 0.0940 0.0912 0.0025 0.0049 0.0093 4 SER A CB
29 O OG . SER A 4 ? 0.0794 0.1100 0.1096 0.0086 -0.0031 0.0092 4 SER A OG
30 N N . AIB A 5 ? 0.0908 0.0886 0.0903 -0.0058 0.0008 0.0009 5 AIB A N
31 C CA . AIB A 5 ? 0.0899 0.0975 0.0882 -0.0021 0.0006 -0.0015 5 AIB A CA
32 C C . AIB A 5 ? 0.0974 0.1006 0.0915 -0.0096 -0.0041 0.0041 5 AIB A C
33 O O . AIB A 5 ? 0.0993 0.1112 0.0913 -0.0032 -0.0166 0.0093 5 AIB A O
34 C CB1 . AIB A 5 ? 0.0815 0.0913 0.1009 0.0023 -0.0038 -0.0036 5 AIB A CB1
35 C CB2 . AIB A 5 ? 0.0879 0.0976 0.0962 -0.0001 0.0010 0.0043 5 AIB A CB2
36 N N . PHE A 6 ? 0.0998 0.1018 0.1070 -0.0088 -0.0075 -0.0048 6 PHE A N
37 C CA . PHE A 6 ? 0.0893 0.1020 0.0994 -0.0117 -0.0141 0.0057 6 PHE A CA
38 C C . PHE A 6 ? 0.1022 0.1092 0.0884 -0.0047 -0.0142 -0.0029 6 PHE A C
39 O O . PHE A 6 ? 0.0965 0.1013 0.1058 0.0025 -0.0045 -0.0114 6 PHE A O
40 C CB . PHE A 6 ? 0.1036 0.1008 0.0952 -0.0018 -0.0090 0.0056 6 PHE A CB
41 C CG . PHE A 6 ? 0.1020 0.1099 0.1081 -0.0085 -0.0027 -0.0002 6 PHE A CG
42 C CD1 . PHE A 6 ? 0.1546 0.1153 0.1299 0.0081 0.0109 -0.0103 6 PHE A CD1
43 C CD2 . PHE A 6 ? 0.1273 0.1034 0.1099 0.0050 -0.0062 0.0047 6 PHE A CD2
44 C CE1 . PHE A 6 ? 0.1882 0.1206 0.1432 0.0004 0.0272 -0.0040 6 PHE A CE1
45 C CE2 . PHE A 6 ? 0.1234 0.1163 0.1232 -0.0017 -0.0043 0.0042 6 PHE A CE2
46 C CZ . PHE A 6 ? 0.1247 0.1210 0.1464 -0.0010 0.0106 0.0015 6 PHE A CZ
47 N N . AIB A 7 ? 0.0986 0.1068 0.0842 -0.0004 -0.0173 -0.0015 7 AIB A N
48 C CA . AIB A 7 ? 0.0956 0.1049 0.1029 -0.0076 -0.0054 -0.0103 7 AIB A CA
49 C C . AIB A 7 ? 0.1170 0.1200 0.1143 0.0129 -0.0153 -0.0053 7 AIB A C
50 O O . AIB A 7 ? 0.1202 0.0985 0.1414 0.0099 -0.0025 0.0166 7 AIB A O
51 O OXT . AIB A 7 ? 0.1213 0.1262 0.1145 0.0019 -0.0130 -0.0046 7 AIB A OXT
52 C CB1 . AIB A 7 ? 0.0958 0.1094 0.1118 -0.0089 -0.0098 -0.0138 7 AIB A CB1
53 C CB2 . AIB A 7 ? 0.0990 0.1103 0.0985 -0.0025 -0.0105 -0.0027 7 AIB A CB2
54 O O . HOH B . ? 0.1818 0.1074 0.2205 -0.0076 -0.0150 -0.0052 101 HOH A O
55 O O . HOH B . ? 0.1161 0.1343 0.2071 -0.0097 -0.0570 -0.0032 102 HOH A O
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 SER 1 1 1 SER SER A . n
A 1 2 AIB 2 2 2 AIB AIB A . n
A 1 3 PHE 3 3 3 PHE PHE A . n
A 1 4 SER 4 4 4 SER SER A . n
A 1 5 AIB 5 5 5 AIB AIB A . n
A 1 6 PHE 6 6 6 PHE PHE A . n
A 1 7 AIB 7 7 7 AIB AIB A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 2 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details pentameric
_pdbx_struct_assembly.oligomeric_count 5
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_455 x-1,y,z 1.0000000000 0.0000000000 0.0000000000 -5.3430000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 5.3430000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_355 x-2,y,z 1.0000000000 0.0000000000 0.0000000000 -10.6860000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 10.6860000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2018-06-27
2 'Structure model' 1 1 2019-07-10
3 'Structure model' 1 2 2020-01-01
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Author supporting evidence'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 3 'Structure model' pdbx_audit_support
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_abbrev'
3 2 'Structure model' '_citation.journal_id_ASTM'
4 2 'Structure model' '_citation.journal_id_CSD'
5 2 'Structure model' '_citation.journal_id_ISSN'
6 2 'Structure model' '_citation.journal_volume'
7 2 'Structure model' '_citation.page_first'
8 2 'Structure model' '_citation.page_last'
9 2 'Structure model' '_citation.pdbx_database_id_DOI'
10 2 'Structure model' '_citation.pdbx_database_id_PubMed'
11 2 'Structure model' '_citation.title'
12 2 'Structure model' '_citation.year'
13 3 'Structure model' '_pdbx_audit_support.funding_organization'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data collection' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 1
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0135 3
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 5
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 6
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id AIB
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 2
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 46.73
_pdbx_validate_torsion.psi -130.70
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Institutes of Health/Office of the Director' 'United States' S10OD021527 1
'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'P41 GM103403' 2
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'scanning transmission electron microscopy'
_pdbx_struct_assembly_auth_evidence.details 'Transmission Electron Microscopy'
#