data_5VBJ
#
_entry.id 5VBJ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5VBJ pdb_00005vbj 10.2210/pdb5vbj/pdb
WWPDB D_1000226914 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2017-08-09
2 'Structure model' 1 1 2018-03-07
3 'Structure model' 1 2 2019-03-20
4 'Structure model' 1 3 2019-11-27
5 'Structure model' 1 4 2024-03-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 4 'Structure model' 'Author supporting evidence'
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Database references'
7 5 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' diffrn_source
2 3 'Structure model' citation
3 3 'Structure model' citation_author
4 4 'Structure model' pdbx_audit_support
5 5 'Structure model' chem_comp_atom
6 5 'Structure model' chem_comp_bond
7 5 'Structure model' database_2
8 5 'Structure model' pdbx_struct_conn_angle
9 5 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_diffrn_source.source'
2 3 'Structure model' '_citation.country'
3 3 'Structure model' '_citation.journal_abbrev'
4 3 'Structure model' '_citation.journal_id_CSD'
5 3 'Structure model' '_citation.journal_id_ISSN'
6 3 'Structure model' '_citation.journal_volume'
7 3 'Structure model' '_citation.page_first'
8 3 'Structure model' '_citation.page_last'
9 3 'Structure model' '_citation.pdbx_database_id_DOI'
10 3 'Structure model' '_citation.pdbx_database_id_PubMed'
11 3 'Structure model' '_citation.title'
12 3 'Structure model' '_citation.year'
13 4 'Structure model' '_pdbx_audit_support.funding_organization'
14 5 'Structure model' '_database_2.pdbx_DOI'
15 5 'Structure model' '_database_2.pdbx_database_accession'
16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'
20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'
24 5 'Structure model' '_pdbx_struct_conn_angle.value'
25 5 'Structure model' '_struct_conn.pdbx_dist_value'
26 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
27 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
28 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
29 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
30 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
31 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
32 5 'Structure model' '_struct_conn.ptnr1_symmetry'
33 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
34 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
35 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
36 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
37 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
38 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
39 5 'Structure model' '_struct_conn.ptnr2_symmetry'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5VBJ
_pdbx_database_status.recvd_initial_deposition_date 2017-03-29
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Ford, M.C.' 1 ?
'Ho, P.S.' 2 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'J Phys Chem Lett'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1948-7185
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 8
_citation.language ?
_citation.page_first 4246
_citation.page_last 4252
_citation.title 'Sulfur as an Acceptor to Bromine in Biomolecular Halogen Bonds.'
_citation.year 2017
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1021/acs.jpclett.7b01725
_citation.pdbx_database_id_PubMed 28796521
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ford, M.C.' 1 0000-0002-0253-5389
primary 'Saxton, M.' 2 ?
primary 'Ho, P.S.' 3 0000-0002-8082-4311
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*CP*GP*AP*TP*(AS)P*(BRU)P*CP*GP*G)-3')
;
3125.939 2 ? ? ? ?
2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ?
3 water nat water 18.015 28 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DA)(DT)(AS)(BRU)(DC)(DG)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CCGATAUCGG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'CALCIUM ION' CA
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DC n
1 3 DG n
1 4 DA n
1 5 DT n
1 6 AS n
1 7 BRU n
1 8 DC n
1 9 DG n
1 10 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 10
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
AS 'DNA linking' n
;2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE
;
? 'C10 H14 N5 O5 P S' 347.287
BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078
CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC DC A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 DG 3 3 3 DG DG A . n
A 1 4 DA 4 4 4 DA DA A . n
A 1 5 DT 5 5 5 DT DT A . n
A 1 6 AS 6 6 6 AS AS A . n
A 1 7 BRU 7 7 7 BRU BRU A . n
A 1 8 DC 8 8 8 DC DC A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DG 10 10 10 DG DG A . n
B 1 1 DC 1 11 11 DC DC B . n
B 1 2 DC 2 12 12 DC DC B . n
B 1 3 DG 3 13 13 DG DG B . n
B 1 4 DA 4 14 14 DA DA B . n
B 1 5 DT 5 15 15 DT DT B . n
B 1 6 AS 6 16 16 AS AS B . n
B 1 7 BRU 7 17 17 BRU BRU B . n
B 1 8 DC 8 18 18 DC DC B . n
B 1 9 DG 9 19 19 DG DG B . n
B 1 10 DG 10 20 20 DG DG B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA 1 101 29 CA CA B .
D 3 HOH 1 101 3 HOH HOH A .
D 3 HOH 2 102 9 HOH HOH A .
D 3 HOH 3 103 11 HOH HOH A .
D 3 HOH 4 104 23 HOH HOH A .
D 3 HOH 5 105 14 HOH HOH A .
D 3 HOH 6 106 13 HOH HOH A .
D 3 HOH 7 107 24 HOH HOH A .
D 3 HOH 8 108 28 HOH HOH A .
D 3 HOH 9 109 17 HOH HOH A .
D 3 HOH 10 110 5 HOH HOH A .
D 3 HOH 11 111 12 HOH HOH A .
D 3 HOH 12 112 26 HOH HOH A .
D 3 HOH 13 113 27 HOH HOH A .
D 3 HOH 14 114 7 HOH HOH A .
D 3 HOH 15 115 18 HOH HOH A .
D 3 HOH 16 116 22 HOH HOH A .
E 3 HOH 1 201 15 HOH HOH B .
E 3 HOH 2 202 2 HOH HOH B .
E 3 HOH 3 203 10 HOH HOH B .
E 3 HOH 4 204 21 HOH HOH B .
E 3 HOH 5 205 19 HOH HOH B .
E 3 HOH 6 206 1 HOH HOH B .
E 3 HOH 7 207 8 HOH HOH B .
E 3 HOH 8 208 4 HOH HOH B .
E 3 HOH 9 209 6 HOH HOH B .
E 3 HOH 10 210 16 HOH HOH B .
E 3 HOH 11 211 20 HOH HOH B .
E 3 HOH 12 212 25 HOH HOH B .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 112.32
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 5VBJ
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 64.165
_cell.length_a_esd ?
_cell.length_b 23.981
_cell.length_b_esd ?
_cell.length_c 37.815
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5VBJ
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 5
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5VBJ
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.15
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 42.86
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298.15
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '25 mM sodium cacodylate, 15 mM calcium chloride, 1.0 mM spermine, and 0.75 mM DNA'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'DECTRIS PILATUS 200K'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2016-12-22
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.54
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.target ?
_diffrn_source.type 'RIGAKU MICROMAX-003'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.54
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_synchrotron_site ?
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 5VBJ
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.94
_reflns.d_resolution_low 50
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 3562
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 85.93
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 3.2
_reflns.pdbx_Rmerge_I_obs 0.088
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 12.4
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high .
_reflns_shell.d_res_low ?
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean ?
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5VBJ
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.944
_refine.ls_d_res_low 34.982
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 5686
_refine.ls_number_reflns_R_free 563
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 74.07
_refine.ls_percent_reflns_R_free 9.90
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2240
_refine.ls_R_factor_R_free 0.2762
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2184
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.33
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.11
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 40.42
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.39
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 404
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 28
_refine_hist.number_atoms_total 433
_refine_hist.d_res_high 1.944
_refine_hist.d_res_low 34.982
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.009 ? 484 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 1.197 ? 735 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 37.852 ? 174 ? f_dihedral_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.053 ? 80 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.007 ? 22 ? f_plane_restr ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 1.9443 2.1400 . . 71 697 40.00 . . . 0.4219 . 0.4177 . . . . . . . . . .
'X-RAY DIFFRACTION' 2.1400 2.4496 . . 139 1220 72.00 . . . 0.4142 . 0.3542 . . . . . . . . . .
'X-RAY DIFFRACTION' 2.4496 3.0859 . . 171 1534 89.00 . . . 0.3227 . 0.3004 . . . . . . . . . .
'X-RAY DIFFRACTION' 3.0859 34.9879 . . 182 1672 97.00 . . . 0.2197 . 0.1553 . . . . . . . . . .
#
_struct.entry_id 5VBJ
_struct.title 'Sulfur as a bromine biomolecular halogen-bond acceptor'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5VBJ
_struct_keywords.text
'Biophysics, Bromine, DNA, Sulfur, Halogen Bonding, Models, Molecular, Molecular Conformation, Uracil'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 5VBJ
_struct_ref.pdbx_db_accession 5VBJ
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 5VBJ A 1 ? 10 ? 5VBJ 1 ? 10 ? 1 10
2 1 5VBJ B 1 ? 10 ? 5VBJ 11 ? 20 ? 11 20
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 6580 ?
1 MORE 1 ?
1 'SSA (A^2)' 5880 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -14.3613464972 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.9817945764
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DT 5 "O3'" A ? ? 1_555 A AS 6 P A ? A DT 5 A AS 6 1_555 ? ? ? ? ? ? ? 1.603 ? ?
covale2 covale both ? A DT 5 "O3'" B ? ? 1_555 A AS 6 P B ? A DT 5 A AS 6 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale3 covale both ? A AS 6 "O3'" A ? ? 1_555 A BRU 7 P ? ? A AS 6 A BRU 7 1_555 ? ? ? ? ? ? ? 1.559 ? ?
covale4 covale both ? A AS 6 "O3'" B ? ? 1_555 A BRU 7 P ? ? A AS 6 A BRU 7 1_555 ? ? ? ? ? ? ? 1.559 ? ?
covale5 covale both ? A BRU 7 "O3'" ? ? ? 1_555 A DC 8 P ? ? A BRU 7 A DC 8 1_555 ? ? ? ? ? ? ? 1.604 ? ?
covale6 covale both ? B DT 5 "O3'" ? ? ? 1_555 B AS 6 P ? ? B DT 15 B AS 16 1_555 ? ? ? ? ? ? ? 1.587 ? ?
covale7 covale both ? B AS 6 "O3'" ? ? ? 1_555 B BRU 7 P ? ? B AS 16 B BRU 17 1_555 ? ? ? ? ? ? ? 1.558 ? ?
covale8 covale both ? B BRU 7 "O3'" ? ? ? 1_555 B DC 8 P ? ? B BRU 17 B DC 18 1_555 ? ? ? ? ? ? ? 1.604 ? ?
metalc1 metalc ? ? D HOH . O ? ? ? 2_556 C CA . CA ? ? A HOH 105 B CA 101 1_555 ? ? ? ? ? ? ? 2.625 ? ?
metalc2 metalc ? ? D HOH . O ? ? ? 2_556 C CA . CA ? ? A HOH 111 B CA 101 1_555 ? ? ? ? ? ? ? 2.636 ? ?
metalc3 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 101 B HOH 202 1_555 ? ? ? ? ? ? ? 2.614 ? ?
metalc4 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 101 B HOH 206 1_555 ? ? ? ? ? ? ? 2.608 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B BRU 7 N3 ? ? A DA 4 B BRU 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B BRU 7 O4 ? ? A DA 4 B BRU 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DT 5 N3 A ? ? 1_555 B AS 6 N1 ? ? A DT 5 B AS 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DT 5 N3 B ? ? 1_555 B AS 6 N1 ? ? A DT 5 B AS 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DT 5 O4 A ? ? 1_555 B AS 6 N6 ? ? A DT 5 B AS 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DT 5 O4 B ? ? 1_555 B AS 6 N6 ? ? A DT 5 B AS 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A AS 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A AS 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A AS 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A AS 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O ? D HOH . ? A HOH 105 ? 2_556 CA ? C CA . ? B CA 101 ? 1_555 O ? D HOH . ? A HOH 111 ? 2_556 62.4 ?
2 O ? D HOH . ? A HOH 105 ? 2_556 CA ? C CA . ? B CA 101 ? 1_555 O ? E HOH . ? B HOH 202 ? 1_555 81.9 ?
3 O ? D HOH . ? A HOH 111 ? 2_556 CA ? C CA . ? B CA 101 ? 1_555 O ? E HOH . ? B HOH 202 ? 1_555 101.1 ?
4 O ? D HOH . ? A HOH 105 ? 2_556 CA ? C CA . ? B CA 101 ? 1_555 O ? E HOH . ? B HOH 206 ? 1_555 112.8 ?
5 O ? D HOH . ? A HOH 111 ? 2_556 CA ? C CA . ? B CA 101 ? 1_555 O ? E HOH . ? B HOH 206 ? 1_555 67.7 ?
6 O ? E HOH . ? B HOH 202 ? 1_555 CA ? C CA . ? B CA 101 ? 1_555 O ? E HOH . ? B HOH 206 ? 1_555 66.5 ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id B
_struct_site.pdbx_auth_comp_id CA
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 4
_struct_site.details 'binding site for residue CA B 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 4 HOH D . ? HOH A 105 . ? 2_556 ?
2 AC1 4 HOH D . ? HOH A 111 . ? 2_556 ?
3 AC1 4 HOH E . ? HOH B 202 . ? 1_555 ?
4 AC1 4 HOH E . ? HOH B 206 . ? 1_555 ?
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 B
_pdbx_validate_rmsd_bond.auth_comp_id_1 DG
_pdbx_validate_rmsd_bond.auth_seq_id_1 13
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 B
_pdbx_validate_rmsd_bond.auth_comp_id_2 DG
_pdbx_validate_rmsd_bond.auth_seq_id_2 13
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.368
_pdbx_validate_rmsd_bond.bond_target_value 1.419
_pdbx_validate_rmsd_bond.bond_deviation -0.051
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.006
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DT 5 ? B "C1'" A DT 5 ? B N1 A DT 5 ? B 110.18 108.30 1.88 0.30 N
2 1 "C3'" A AS 6 ? A "O3'" A AS 6 ? A P A BRU 7 ? ? 126.94 119.70 7.24 1.20 Y
3 1 "O3'" A AS 6 ? B P A BRU 7 ? ? "O5'" A BRU 7 ? ? 117.35 104.00 13.35 1.90 Y
4 1 "C3'" B AS 16 ? ? "O3'" B AS 16 ? ? P B BRU 17 ? ? 101.31 119.70 -18.39 1.20 Y
5 1 "O3'" B AS 16 ? ? P B BRU 17 ? ? OP2 B BRU 17 ? ? 130.50 110.50 20.00 1.10 Y
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 106 ? D HOH .
2 1 B HOH 212 ? E HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
AS P P N N 1
AS OP1 O N N 2
AS S2P S N N 3
AS OP3 O N N 4
AS "O5'" O N N 5
AS "C5'" C N N 6
AS "C4'" C N R 7
AS "O4'" O N N 8
AS "C3'" C N S 9
AS "O3'" O N N 10
AS "C2'" C N N 11
AS "C1'" C N R 12
AS N9 N Y N 13
AS C8 C Y N 14
AS N7 N Y N 15
AS C5 C Y N 16
AS C6 C Y N 17
AS N6 N N N 18
AS N1 N Y N 19
AS C2 C Y N 20
AS N3 N Y N 21
AS C4 C Y N 22
AS HOP1 H N N 23
AS HOP3 H N N 24
AS "H5'" H N N 25
AS "H5''" H N N 26
AS "H4'" H N N 27
AS "H3'" H N N 28
AS "HO3'" H N N 29
AS "H2'" H N N 30
AS "H2''" H N N 31
AS "H1'" H N N 32
AS H8 H N N 33
AS HN61 H N N 34
AS HN62 H N N 35
AS H2 H N N 36
BRU N1 N N N 37
BRU C2 C N N 38
BRU N3 N N N 39
BRU C4 C N N 40
BRU C5 C N N 41
BRU C6 C N N 42
BRU O2 O N N 43
BRU O4 O N N 44
BRU BR BR N N 45
BRU "C1'" C N R 46
BRU "C2'" C N N 47
BRU "C3'" C N S 48
BRU "C4'" C N R 49
BRU "O3'" O N N 50
BRU "O4'" O N N 51
BRU "C5'" C N N 52
BRU "O5'" O N N 53
BRU P P N N 54
BRU OP1 O N N 55
BRU OP2 O N N 56
BRU OP3 O N N 57
BRU HN3 H N N 58
BRU H6 H N N 59
BRU "H1'" H N N 60
BRU "H2'" H N N 61
BRU "H2''" H N N 62
BRU "H3'" H N N 63
BRU "H4'" H N N 64
BRU "HO3'" H N N 65
BRU "H5'" H N N 66
BRU "H5''" H N N 67
BRU HOP2 H N N 68
BRU HOP3 H N N 69
CA CA CA N N 70
DA OP3 O N N 71
DA P P N N 72
DA OP1 O N N 73
DA OP2 O N N 74
DA "O5'" O N N 75
DA "C5'" C N N 76
DA "C4'" C N R 77
DA "O4'" O N N 78
DA "C3'" C N S 79
DA "O3'" O N N 80
DA "C2'" C N N 81
DA "C1'" C N R 82
DA N9 N Y N 83
DA C8 C Y N 84
DA N7 N Y N 85
DA C5 C Y N 86
DA C6 C Y N 87
DA N6 N N N 88
DA N1 N Y N 89
DA C2 C Y N 90
DA N3 N Y N 91
DA C4 C Y N 92
DA HOP3 H N N 93
DA HOP2 H N N 94
DA "H5'" H N N 95
DA "H5''" H N N 96
DA "H4'" H N N 97
DA "H3'" H N N 98
DA "HO3'" H N N 99
DA "H2'" H N N 100
DA "H2''" H N N 101
DA "H1'" H N N 102
DA H8 H N N 103
DA H61 H N N 104
DA H62 H N N 105
DA H2 H N N 106
DC OP3 O N N 107
DC P P N N 108
DC OP1 O N N 109
DC OP2 O N N 110
DC "O5'" O N N 111
DC "C5'" C N N 112
DC "C4'" C N R 113
DC "O4'" O N N 114
DC "C3'" C N S 115
DC "O3'" O N N 116
DC "C2'" C N N 117
DC "C1'" C N R 118
DC N1 N N N 119
DC C2 C N N 120
DC O2 O N N 121
DC N3 N N N 122
DC C4 C N N 123
DC N4 N N N 124
DC C5 C N N 125
DC C6 C N N 126
DC HOP3 H N N 127
DC HOP2 H N N 128
DC "H5'" H N N 129
DC "H5''" H N N 130
DC "H4'" H N N 131
DC "H3'" H N N 132
DC "HO3'" H N N 133
DC "H2'" H N N 134
DC "H2''" H N N 135
DC "H1'" H N N 136
DC H41 H N N 137
DC H42 H N N 138
DC H5 H N N 139
DC H6 H N N 140
DG OP3 O N N 141
DG P P N N 142
DG OP1 O N N 143
DG OP2 O N N 144
DG "O5'" O N N 145
DG "C5'" C N N 146
DG "C4'" C N R 147
DG "O4'" O N N 148
DG "C3'" C N S 149
DG "O3'" O N N 150
DG "C2'" C N N 151
DG "C1'" C N R 152
DG N9 N Y N 153
DG C8 C Y N 154
DG N7 N Y N 155
DG C5 C Y N 156
DG C6 C N N 157
DG O6 O N N 158
DG N1 N N N 159
DG C2 C N N 160
DG N2 N N N 161
DG N3 N N N 162
DG C4 C Y N 163
DG HOP3 H N N 164
DG HOP2 H N N 165
DG "H5'" H N N 166
DG "H5''" H N N 167
DG "H4'" H N N 168
DG "H3'" H N N 169
DG "HO3'" H N N 170
DG "H2'" H N N 171
DG "H2''" H N N 172
DG "H1'" H N N 173
DG H8 H N N 174
DG H1 H N N 175
DG H21 H N N 176
DG H22 H N N 177
DT OP3 O N N 178
DT P P N N 179
DT OP1 O N N 180
DT OP2 O N N 181
DT "O5'" O N N 182
DT "C5'" C N N 183
DT "C4'" C N R 184
DT "O4'" O N N 185
DT "C3'" C N S 186
DT "O3'" O N N 187
DT "C2'" C N N 188
DT "C1'" C N R 189
DT N1 N N N 190
DT C2 C N N 191
DT O2 O N N 192
DT N3 N N N 193
DT C4 C N N 194
DT O4 O N N 195
DT C5 C N N 196
DT C7 C N N 197
DT C6 C N N 198
DT HOP3 H N N 199
DT HOP2 H N N 200
DT "H5'" H N N 201
DT "H5''" H N N 202
DT "H4'" H N N 203
DT "H3'" H N N 204
DT "HO3'" H N N 205
DT "H2'" H N N 206
DT "H2''" H N N 207
DT "H1'" H N N 208
DT H3 H N N 209
DT H71 H N N 210
DT H72 H N N 211
DT H73 H N N 212
DT H6 H N N 213
HOH O O N N 214
HOH H1 H N N 215
HOH H2 H N N 216
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AS P OP1 sing N N 1
AS P S2P doub N N 2
AS P OP3 sing N N 3
AS P "O5'" sing N N 4
AS OP1 HOP1 sing N N 5
AS OP3 HOP3 sing N N 6
AS "O5'" "C5'" sing N N 7
AS "C5'" "C4'" sing N N 8
AS "C5'" "H5'" sing N N 9
AS "C5'" "H5''" sing N N 10
AS "C4'" "O4'" sing N N 11
AS "C4'" "C3'" sing N N 12
AS "C4'" "H4'" sing N N 13
AS "O4'" "C1'" sing N N 14
AS "C3'" "O3'" sing N N 15
AS "C3'" "C2'" sing N N 16
AS "C3'" "H3'" sing N N 17
AS "O3'" "HO3'" sing N N 18
AS "C2'" "C1'" sing N N 19
AS "C2'" "H2'" sing N N 20
AS "C2'" "H2''" sing N N 21
AS "C1'" N9 sing N N 22
AS "C1'" "H1'" sing N N 23
AS N9 C8 sing Y N 24
AS N9 C4 sing Y N 25
AS C8 N7 doub Y N 26
AS C8 H8 sing N N 27
AS N7 C5 sing Y N 28
AS C5 C6 sing Y N 29
AS C5 C4 doub Y N 30
AS C6 N6 sing N N 31
AS C6 N1 doub Y N 32
AS N6 HN61 sing N N 33
AS N6 HN62 sing N N 34
AS N1 C2 sing Y N 35
AS C2 N3 doub Y N 36
AS C2 H2 sing N N 37
AS N3 C4 sing Y N 38
BRU N1 C2 sing N N 39
BRU N1 C6 sing N N 40
BRU N1 "C1'" sing N N 41
BRU C2 N3 sing N N 42
BRU C2 O2 doub N N 43
BRU N3 C4 sing N N 44
BRU N3 HN3 sing N N 45
BRU C4 C5 sing N N 46
BRU C4 O4 doub N N 47
BRU C5 C6 doub N N 48
BRU C5 BR sing N N 49
BRU C6 H6 sing N N 50
BRU "C1'" "C2'" sing N N 51
BRU "C1'" "O4'" sing N N 52
BRU "C1'" "H1'" sing N N 53
BRU "C2'" "C3'" sing N N 54
BRU "C2'" "H2'" sing N N 55
BRU "C2'" "H2''" sing N N 56
BRU "C3'" "C4'" sing N N 57
BRU "C3'" "O3'" sing N N 58
BRU "C3'" "H3'" sing N N 59
BRU "C4'" "O4'" sing N N 60
BRU "C4'" "C5'" sing N N 61
BRU "C4'" "H4'" sing N N 62
BRU "O3'" "HO3'" sing N N 63
BRU "C5'" "O5'" sing N N 64
BRU "C5'" "H5'" sing N N 65
BRU "C5'" "H5''" sing N N 66
BRU "O5'" P sing N N 67
BRU P OP1 doub N N 68
BRU P OP2 sing N N 69
BRU P OP3 sing N N 70
BRU OP2 HOP2 sing N N 71
BRU OP3 HOP3 sing N N 72
DA OP3 P sing N N 73
DA OP3 HOP3 sing N N 74
DA P OP1 doub N N 75
DA P OP2 sing N N 76
DA P "O5'" sing N N 77
DA OP2 HOP2 sing N N 78
DA "O5'" "C5'" sing N N 79
DA "C5'" "C4'" sing N N 80
DA "C5'" "H5'" sing N N 81
DA "C5'" "H5''" sing N N 82
DA "C4'" "O4'" sing N N 83
DA "C4'" "C3'" sing N N 84
DA "C4'" "H4'" sing N N 85
DA "O4'" "C1'" sing N N 86
DA "C3'" "O3'" sing N N 87
DA "C3'" "C2'" sing N N 88
DA "C3'" "H3'" sing N N 89
DA "O3'" "HO3'" sing N N 90
DA "C2'" "C1'" sing N N 91
DA "C2'" "H2'" sing N N 92
DA "C2'" "H2''" sing N N 93
DA "C1'" N9 sing N N 94
DA "C1'" "H1'" sing N N 95
DA N9 C8 sing Y N 96
DA N9 C4 sing Y N 97
DA C8 N7 doub Y N 98
DA C8 H8 sing N N 99
DA N7 C5 sing Y N 100
DA C5 C6 sing Y N 101
DA C5 C4 doub Y N 102
DA C6 N6 sing N N 103
DA C6 N1 doub Y N 104
DA N6 H61 sing N N 105
DA N6 H62 sing N N 106
DA N1 C2 sing Y N 107
DA C2 N3 doub Y N 108
DA C2 H2 sing N N 109
DA N3 C4 sing Y N 110
DC OP3 P sing N N 111
DC OP3 HOP3 sing N N 112
DC P OP1 doub N N 113
DC P OP2 sing N N 114
DC P "O5'" sing N N 115
DC OP2 HOP2 sing N N 116
DC "O5'" "C5'" sing N N 117
DC "C5'" "C4'" sing N N 118
DC "C5'" "H5'" sing N N 119
DC "C5'" "H5''" sing N N 120
DC "C4'" "O4'" sing N N 121
DC "C4'" "C3'" sing N N 122
DC "C4'" "H4'" sing N N 123
DC "O4'" "C1'" sing N N 124
DC "C3'" "O3'" sing N N 125
DC "C3'" "C2'" sing N N 126
DC "C3'" "H3'" sing N N 127
DC "O3'" "HO3'" sing N N 128
DC "C2'" "C1'" sing N N 129
DC "C2'" "H2'" sing N N 130
DC "C2'" "H2''" sing N N 131
DC "C1'" N1 sing N N 132
DC "C1'" "H1'" sing N N 133
DC N1 C2 sing N N 134
DC N1 C6 sing N N 135
DC C2 O2 doub N N 136
DC C2 N3 sing N N 137
DC N3 C4 doub N N 138
DC C4 N4 sing N N 139
DC C4 C5 sing N N 140
DC N4 H41 sing N N 141
DC N4 H42 sing N N 142
DC C5 C6 doub N N 143
DC C5 H5 sing N N 144
DC C6 H6 sing N N 145
DG OP3 P sing N N 146
DG OP3 HOP3 sing N N 147
DG P OP1 doub N N 148
DG P OP2 sing N N 149
DG P "O5'" sing N N 150
DG OP2 HOP2 sing N N 151
DG "O5'" "C5'" sing N N 152
DG "C5'" "C4'" sing N N 153
DG "C5'" "H5'" sing N N 154
DG "C5'" "H5''" sing N N 155
DG "C4'" "O4'" sing N N 156
DG "C4'" "C3'" sing N N 157
DG "C4'" "H4'" sing N N 158
DG "O4'" "C1'" sing N N 159
DG "C3'" "O3'" sing N N 160
DG "C3'" "C2'" sing N N 161
DG "C3'" "H3'" sing N N 162
DG "O3'" "HO3'" sing N N 163
DG "C2'" "C1'" sing N N 164
DG "C2'" "H2'" sing N N 165
DG "C2'" "H2''" sing N N 166
DG "C1'" N9 sing N N 167
DG "C1'" "H1'" sing N N 168
DG N9 C8 sing Y N 169
DG N9 C4 sing Y N 170
DG C8 N7 doub Y N 171
DG C8 H8 sing N N 172
DG N7 C5 sing Y N 173
DG C5 C6 sing N N 174
DG C5 C4 doub Y N 175
DG C6 O6 doub N N 176
DG C6 N1 sing N N 177
DG N1 C2 sing N N 178
DG N1 H1 sing N N 179
DG C2 N2 sing N N 180
DG C2 N3 doub N N 181
DG N2 H21 sing N N 182
DG N2 H22 sing N N 183
DG N3 C4 sing N N 184
DT OP3 P sing N N 185
DT OP3 HOP3 sing N N 186
DT P OP1 doub N N 187
DT P OP2 sing N N 188
DT P "O5'" sing N N 189
DT OP2 HOP2 sing N N 190
DT "O5'" "C5'" sing N N 191
DT "C5'" "C4'" sing N N 192
DT "C5'" "H5'" sing N N 193
DT "C5'" "H5''" sing N N 194
DT "C4'" "O4'" sing N N 195
DT "C4'" "C3'" sing N N 196
DT "C4'" "H4'" sing N N 197
DT "O4'" "C1'" sing N N 198
DT "C3'" "O3'" sing N N 199
DT "C3'" "C2'" sing N N 200
DT "C3'" "H3'" sing N N 201
DT "O3'" "HO3'" sing N N 202
DT "C2'" "C1'" sing N N 203
DT "C2'" "H2'" sing N N 204
DT "C2'" "H2''" sing N N 205
DT "C1'" N1 sing N N 206
DT "C1'" "H1'" sing N N 207
DT N1 C2 sing N N 208
DT N1 C6 sing N N 209
DT C2 O2 doub N N 210
DT C2 N3 sing N N 211
DT N3 C4 sing N N 212
DT N3 H3 sing N N 213
DT C4 O4 doub N N 214
DT C4 C5 sing N N 215
DT C5 C7 sing N N 216
DT C5 C6 doub N N 217
DT C7 H71 sing N N 218
DT C7 H72 sing N N 219
DT C7 H73 sing N N 220
DT C6 H6 sing N N 221
HOH O H1 sing N N 222
HOH O H2 sing N N 223
#
_ndb_struct_conf_na.entry_id 5VBJ
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 10 1_555 0.343 -0.032 0.181 -2.227 -12.753 0.319 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1
1 A DC 2 1_555 B DG 9 1_555 0.189 -0.585 0.219 6.402 -6.833 1.693 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1
1 A DG 3 1_555 B DC 8 1_555 0.170 -0.166 0.540 5.841 -14.018 -0.479 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1
1 A DA 4 1_555 B BRU 7 1_555 0.022 -0.026 0.171 -4.854 -15.369 3.375 4 A_DA4:BRU17_B A 4 ? B 17 ? 20 1
1 A DT 5 1_555 B AS 6 1_555 -0.915 0.114 0.501 -17.122 -18.694 3.975 5 A_DT5:AS16_B A 5 ? B 16 ? 20 1
1 A AS 6 1_555 B DT 5 1_555 0.470 -0.222 0.089 -0.593 -13.025 2.520 6 A_AS6:DT15_B A 6 ? B 15 ? 20 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 0.581 1.856 3.275 4.694 2.004 37.212 2.615 -0.274 3.412 3.123
-7.314 37.549 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ?
1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.778 0.914 3.406 -6.666 1.463 38.826 1.172 0.312 3.518 2.180 9.934
39.399 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ?
1 A DG 3 1_555 B DC 8 1_555 A DA 4 1_555 B BRU 7 1_555 0.016 -0.205 3.449 1.139 -2.338 38.337 -0.003 0.125 3.454 -3.556
-1.732 38.422 3 AA_DG3DA4:BRU17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ?
1 A DA 4 1_555 B BRU 7 1_555 A DT 5 1_555 B AS 6 1_555 -0.448 -0.698 3.471 -3.286 -2.893 30.568 -0.705 0.153 3.548 -5.452 6.192
30.872 4 AA_DA4DT5:AS16BRU17_BB A 4 ? B 17 ? A 5 ? B 16 ?
1 A DT 5 1_555 B AS 6 1_555 A AS 6 1_555 B DT 5 1_555 0.404 1.031 3.100 5.715 0.449 44.348 1.317 -0.032 3.136 0.592
-7.533 44.698 5 AA_DT5AS6:DT15AS16_BB A 5 ? B 16 ? A 6 ? B 15 ?
#
_pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)'
_pdbx_audit_support.country 'United States'
_pdbx_audit_support.grant_number 5351441
_pdbx_audit_support.ordinal 1
#
_atom_sites.entry_id 5VBJ
_atom_sites.fract_transf_matrix[1][1] 0.015585
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.006398
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.041700
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.028586
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
CA
N
O
P
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.795 10.240 2.004 1.00 38.19 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.325 9.058 1.326 1.00 41.52 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 10.043 7.819 1.839 1.00 38.49 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 10.869 8.192 2.961 1.00 35.03 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 9.124 6.718 2.361 1.00 42.95 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 9.671 5.448 2.104 1.00 38.36 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 9.049 7.002 3.852 1.00 35.55 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 10.431 7.536 4.130 1.00 36.45 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 10.488 8.508 5.228 1.00 37.48 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 10.381 8.069 6.548 1.00 35.84 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 10.182 6.864 6.769 1.00 39.68 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 10.491 8.975 7.549 1.00 32.37 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 10.685 10.264 7.262 1.00 37.25 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 10.776 11.131 8.280 1.00 33.19 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.799 10.724 5.918 1.00 37.35 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.703 9.817 4.945 1.00 32.97 ? 1 DC A C6 1
ATOM 17 P P . DC A 1 2 ? 8.804 4.410 1.244 1.00 50.27 ? 2 DC A P 1
ATOM 18 O OP1 . DC A 1 2 ? 9.491 3.091 1.189 1.00 42.23 ? 2 DC A OP1 1
ATOM 19 O OP2 . DC A 1 2 ? 8.475 5.107 -0.016 1.00 55.26 ? 2 DC A OP2 1
ATOM 20 O "O5'" . DC A 1 2 ? 7.429 4.312 2.063 1.00 44.95 ? 2 DC A "O5'" 1
ATOM 21 C "C5'" . DC A 1 2 ? 7.310 3.386 3.124 1.00 44.59 ? 2 DC A "C5'" 1
ATOM 22 C "C4'" . DC A 1 2 ? 6.197 3.776 4.067 1.00 35.56 ? 2 DC A "C4'" 1
ATOM 23 O "O4'" . DC A 1 2 ? 6.552 5.000 4.769 1.00 41.25 ? 2 DC A "O4'" 1
ATOM 24 C "C3'" . DC A 1 2 ? 4.860 4.070 3.401 1.00 38.13 ? 2 DC A "C3'" 1
ATOM 25 O "O3'" . DC A 1 2 ? 3.836 3.638 4.254 1.00 42.37 ? 2 DC A "O3'" 1
ATOM 26 C "C2'" . DC A 1 2 ? 4.873 5.595 3.329 1.00 37.13 ? 2 DC A "C2'" 1
ATOM 27 C "C1'" . DC A 1 2 ? 5.453 5.874 4.692 1.00 36.71 ? 2 DC A "C1'" 1
ATOM 28 N N1 . DC A 1 2 ? 5.899 7.273 4.925 1.00 34.98 ? 2 DC A N1 1
ATOM 29 C C2 . DC A 1 2 ? 6.211 7.664 6.221 1.00 33.63 ? 2 DC A C2 1
ATOM 30 O O2 . DC A 1 2 ? 6.130 6.832 7.125 1.00 35.15 ? 2 DC A O2 1
ATOM 31 N N3 . DC A 1 2 ? 6.607 8.939 6.453 1.00 34.87 ? 2 DC A N3 1
ATOM 32 C C4 . DC A 1 2 ? 6.688 9.812 5.446 1.00 33.51 ? 2 DC A C4 1
ATOM 33 N N4 . DC A 1 2 ? 7.094 11.066 5.729 1.00 29.65 ? 2 DC A N4 1
ATOM 34 C C5 . DC A 1 2 ? 6.353 9.438 4.105 1.00 35.96 ? 2 DC A C5 1
ATOM 35 C C6 . DC A 1 2 ? 5.957 8.169 3.892 1.00 34.93 ? 2 DC A C6 1
ATOM 36 P P . DG A 1 3 ? 2.935 2.372 3.880 1.00 42.79 ? 3 DG A P 1
ATOM 37 O OP1 . DG A 1 3 ? 3.871 1.300 3.447 1.00 43.75 ? 3 DG A OP1 1
ATOM 38 O OP2 . DG A 1 3 ? 1.806 2.838 3.044 1.00 39.34 ? 3 DG A OP2 1
ATOM 39 O "O5'" . DG A 1 3 ? 2.302 1.942 5.273 1.00 42.45 ? 3 DG A "O5'" 1
ATOM 40 C "C5'" . DG A 1 3 ? 3.112 1.358 6.263 1.00 39.36 ? 3 DG A "C5'" 1
ATOM 41 C "C4'" . DG A 1 3 ? 2.743 1.908 7.615 1.00 40.16 ? 3 DG A "C4'" 1
ATOM 42 O "O4'" . DG A 1 3 ? 3.188 3.280 7.683 1.00 37.43 ? 3 DG A "O4'" 1
ATOM 43 C "C3'" . DG A 1 3 ? 1.244 1.924 7.911 1.00 39.17 ? 3 DG A "C3'" 1
ATOM 44 O "O3'" . DG A 1 3 ? 1.004 1.491 9.259 1.00 46.25 ? 3 DG A "O3'" 1
ATOM 45 C "C2'" . DG A 1 3 ? 0.854 3.386 7.678 1.00 33.13 ? 3 DG A "C2'" 1
ATOM 46 C "C1'" . DG A 1 3 ? 2.129 4.121 8.046 1.00 33.49 ? 3 DG A "C1'" 1
ATOM 47 N N9 . DG A 1 3 ? 2.317 5.377 7.338 1.00 31.18 ? 3 DG A N9 1
ATOM 48 C C8 . DG A 1 3 ? 2.209 5.596 5.989 1.00 32.42 ? 3 DG A C8 1
ATOM 49 N N7 . DG A 1 3 ? 2.450 6.837 5.643 1.00 32.12 ? 3 DG A N7 1
ATOM 50 C C5 . DG A 1 3 ? 2.748 7.470 6.837 1.00 29.29 ? 3 DG A C5 1
ATOM 51 C C6 . DG A 1 3 ? 3.094 8.816 7.093 1.00 31.33 ? 3 DG A C6 1
ATOM 52 O O6 . DG A 1 3 ? 3.213 9.745 6.279 1.00 32.34 ? 3 DG A O6 1
ATOM 53 N N1 . DG A 1 3 ? 3.310 9.043 8.457 1.00 34.96 ? 3 DG A N1 1
ATOM 54 C C2 . DG A 1 3 ? 3.200 8.080 9.444 1.00 31.50 ? 3 DG A C2 1
ATOM 55 N N2 . DG A 1 3 ? 3.453 8.475 10.694 1.00 37.14 ? 3 DG A N2 1
ATOM 56 N N3 . DG A 1 3 ? 2.882 6.816 9.215 1.00 34.93 ? 3 DG A N3 1
ATOM 57 C C4 . DG A 1 3 ? 2.670 6.583 7.892 1.00 35.00 ? 3 DG A C4 1
ATOM 58 P P . DA A 1 4 ? -0.380 1.837 10.016 1.00 43.60 ? 4 DA A P 1
ATOM 59 O OP1 . DA A 1 4 ? -0.581 0.862 11.111 1.00 45.88 ? 4 DA A OP1 1
ATOM 60 O OP2 . DA A 1 4 ? -1.445 2.101 9.017 1.00 40.31 ? 4 DA A OP2 1
ATOM 61 O "O5'" . DA A 1 4 ? -0.038 3.170 10.791 1.00 42.49 ? 4 DA A "O5'" 1
ATOM 62 C "C5'" . DA A 1 4 ? 1.042 3.180 11.688 1.00 38.91 ? 4 DA A "C5'" 1
ATOM 63 C "C4'" . DA A 1 4 ? 0.899 4.316 12.669 1.00 42.40 ? 4 DA A "C4'" 1
ATOM 64 O "O4'" . DA A 1 4 ? 1.110 5.568 11.979 1.00 41.29 ? 4 DA A "O4'" 1
ATOM 65 C "C3'" . DA A 1 4 ? -0.475 4.429 13.299 1.00 40.58 ? 4 DA A "C3'" 1
ATOM 66 O "O3'" . DA A 1 4 ? -0.356 5.046 14.571 1.00 37.52 ? 4 DA A "O3'" 1
ATOM 67 C "C2'" . DA A 1 4 ? -1.212 5.308 12.288 1.00 35.67 ? 4 DA A "C2'" 1
ATOM 68 C "C1'" . DA A 1 4 ? -0.113 6.274 11.888 1.00 36.62 ? 4 DA A "C1'" 1
ATOM 69 N N9 . DA A 1 4 ? -0.237 6.811 10.539 1.00 33.13 ? 4 DA A N9 1
ATOM 70 C C8 . DA A 1 4 ? -0.594 6.142 9.398 1.00 34.26 ? 4 DA A C8 1
ATOM 71 N N7 . DA A 1 4 ? -0.606 6.897 8.324 1.00 30.65 ? 4 DA A N7 1
ATOM 72 C C5 . DA A 1 4 ? -0.215 8.146 8.800 1.00 33.32 ? 4 DA A C5 1
ATOM 73 C C6 . DA A 1 4 ? -0.011 9.386 8.167 1.00 31.24 ? 4 DA A C6 1
ATOM 74 N N6 . DA A 1 4 ? -0.185 9.584 6.853 1.00 28.19 ? 4 DA A N6 1
ATOM 75 N N1 . DA A 1 4 ? 0.368 10.424 8.939 1.00 30.83 ? 4 DA A N1 1
ATOM 76 C C2 . DA A 1 4 ? 0.548 10.231 10.250 1.00 30.16 ? 4 DA A C2 1
ATOM 77 N N3 . DA A 1 4 ? 0.405 9.119 10.954 1.00 31.85 ? 4 DA A N3 1
ATOM 78 C C4 . DA A 1 4 ? 0.014 8.103 10.161 1.00 34.43 ? 4 DA A C4 1
ATOM 79 P P . DT A 1 5 ? -1.648 5.273 15.498 1.00 40.86 ? 5 DT A P 1
ATOM 80 O OP1 . DT A 1 5 ? -1.320 4.670 16.795 1.00 50.34 ? 5 DT A OP1 1
ATOM 81 O OP2 . DT A 1 5 ? -2.856 4.812 14.775 1.00 37.90 ? 5 DT A OP2 1
ATOM 82 O "O5'" . DT A 1 5 ? -1.688 6.876 15.722 1.00 45.43 ? 5 DT A "O5'" 1
ATOM 83 C "C5'" A DT A 1 5 ? -0.456 7.572 16.016 0.52 35.25 ? 5 DT A "C5'" 1
ATOM 84 C "C5'" B DT A 1 5 ? -1.349 7.773 14.656 0.48 35.54 ? 5 DT A "C5'" 1
ATOM 85 C "C4'" A DT A 1 5 ? -0.566 9.076 15.772 0.52 31.82 ? 5 DT A "C4'" 1
ATOM 86 C "C4'" B DT A 1 5 ? -2.073 9.104 14.770 0.48 31.92 ? 5 DT A "C4'" 1
ATOM 87 O "O4'" A DT A 1 5 ? -0.660 9.361 14.351 0.52 30.38 ? 5 DT A "O4'" 1
ATOM 88 O "O4'" B DT A 1 5 ? -2.016 9.783 13.479 0.48 31.05 ? 5 DT A "O4'" 1
ATOM 89 C "C3'" A DT A 1 5 ? -1.763 9.766 16.428 0.52 29.68 ? 5 DT A "C3'" 1
ATOM 90 C "C3'" B DT A 1 5 ? -3.555 9.005 15.098 0.48 30.01 ? 5 DT A "C3'" 1
ATOM 91 O "O3'" A DT A 1 5 ? -1.308 10.901 17.160 0.52 31.20 ? 5 DT A "O3'" 1
ATOM 92 O "O3'" B DT A 1 5 ? -3.997 10.207 15.719 0.48 30.41 ? 5 DT A "O3'" 1
ATOM 93 C "C2'" A DT A 1 5 ? -2.648 10.168 15.240 0.52 29.46 ? 5 DT A "C2'" 1
ATOM 94 C "C2'" B DT A 1 5 ? -4.157 8.865 13.709 0.48 32.91 ? 5 DT A "C2'" 1
ATOM 95 C "C1'" A DT A 1 5 ? -1.616 10.377 14.151 0.52 29.99 ? 5 DT A "C1'" 1
ATOM 96 C "C1'" B DT A 1 5 ? -3.324 9.886 12.950 0.48 30.51 ? 5 DT A "C1'" 1
ATOM 97 N N1 A DT A 1 5 ? -2.150 10.253 12.758 0.52 30.30 ? 5 DT A N1 1
ATOM 98 N N1 B DT A 1 5 ? -3.300 9.673 11.463 0.48 29.24 ? 5 DT A N1 1
ATOM 99 C C2 A DT A 1 5 ? -2.165 11.362 11.940 0.52 29.28 ? 5 DT A C2 1
ATOM 100 C C2 B DT A 1 5 ? -2.769 10.650 10.651 0.48 30.70 ? 5 DT A C2 1
ATOM 101 O O2 A DT A 1 5 ? -1.778 12.463 12.293 0.52 29.20 ? 5 DT A O2 1
ATOM 102 O O2 B DT A 1 5 ? -2.280 11.680 11.082 0.48 30.24 ? 5 DT A O2 1
ATOM 103 N N3 A DT A 1 5 ? -2.647 11.136 10.681 0.52 30.71 ? 5 DT A N3 1
ATOM 104 N N3 B DT A 1 5 ? -2.817 10.369 9.304 0.48 29.46 ? 5 DT A N3 1
ATOM 105 C C4 A DT A 1 5 ? -3.106 9.940 10.163 0.52 31.19 ? 5 DT A C4 1
ATOM 106 C C4 B DT A 1 5 ? -3.348 9.240 8.698 0.48 30.95 ? 5 DT A C4 1
ATOM 107 O O4 A DT A 1 5 ? -3.528 9.842 9.012 0.52 31.07 ? 5 DT A O4 1
ATOM 108 O O4 B DT A 1 5 ? -3.352 9.082 7.477 0.48 29.57 ? 5 DT A O4 1
ATOM 109 C C5 A DT A 1 5 ? -3.058 8.816 11.072 0.52 29.76 ? 5 DT A C5 1
ATOM 110 C C5 B DT A 1 5 ? -3.898 8.260 9.602 0.48 31.30 ? 5 DT A C5 1
ATOM 111 C C7 A DT A 1 5 ? -3.526 7.466 10.624 0.52 30.68 ? 5 DT A C7 1
ATOM 112 C C7 B DT A 1 5 ? -4.499 6.992 9.057 0.48 28.26 ? 5 DT A C7 1
ATOM 113 C C6 A DT A 1 5 ? -2.586 9.023 12.308 0.52 29.52 ? 5 DT A C6 1
ATOM 114 C C6 B DT A 1 5 ? -3.852 8.522 10.927 0.48 31.28 ? 5 DT A C6 1
HETATM 115 P P A AS A 1 6 ? -2.205 11.483 18.354 0.52 33.14 ? 6 AS A P 1
HETATM 116 P P B AS A 1 6 ? -3.812 10.488 17.291 0.48 33.01 ? 6 AS A P 1
HETATM 117 O OP1 A AS A 1 6 ? -1.252 12.123 19.344 0.52 30.77 ? 6 AS A OP1 1
HETATM 118 O OP1 B AS A 1 6 ? -2.347 10.366 17.615 0.48 31.20 ? 6 AS A OP1 1
HETATM 119 S S2P A AS A 1 6 ? -3.489 10.071 18.780 0.52 28.69 ? 6 AS A S2P 1
HETATM 120 S S2P B AS A 1 6 ? -5.160 9.441 18.248 0.48 42.17 ? 6 AS A S2P 1
HETATM 121 O "O5'" A AS A 1 6 ? -3.136 12.568 17.617 0.52 29.66 ? 6 AS A "O5'" 1
HETATM 122 O "O5'" B AS A 1 6 ? -4.304 12.008 17.412 0.48 25.75 ? 6 AS A "O5'" 1
HETATM 123 C "C5'" A AS A 1 6 ? -2.510 13.731 17.080 0.52 27.55 ? 6 AS A "C5'" 1
HETATM 124 C "C5'" B AS A 1 6 ? -3.302 13.020 17.383 0.48 29.11 ? 6 AS A "C5'" 1
HETATM 125 C "C4'" A AS A 1 6 ? -3.460 14.591 16.286 0.52 27.90 ? 6 AS A "C4'" 1
HETATM 126 C "C4'" B AS A 1 6 ? -3.660 14.220 16.539 0.48 28.08 ? 6 AS A "C4'" 1
HETATM 127 O "O4'" A AS A 1 6 ? -3.766 13.961 15.022 0.52 27.07 ? 6 AS A "O4'" 1
HETATM 128 O "O4'" B AS A 1 6 ? -3.839 13.831 15.156 0.48 27.17 ? 6 AS A "O4'" 1
HETATM 129 C "C3'" A AS A 1 6 ? -4.810 14.883 16.964 0.52 27.38 ? 6 AS A "C3'" 1
HETATM 130 C "C3'" B AS A 1 6 ? -4.938 14.959 16.957 0.48 27.37 ? 6 AS A "C3'" 1
HETATM 131 O "O3'" A AS A 1 6 ? -4.978 16.289 17.210 0.52 27.22 ? 6 AS A "O3'" 1
HETATM 132 O "O3'" B AS A 1 6 ? -4.720 16.380 16.977 0.48 27.16 ? 6 AS A "O3'" 1
HETATM 133 C "C2'" A AS A 1 6 ? -5.850 14.380 15.957 0.52 26.15 ? 6 AS A "C2'" 1
HETATM 134 C "C2'" B AS A 1 6 ? -5.947 14.545 15.880 0.48 26.12 ? 6 AS A "C2'" 1
HETATM 135 C "C1'" A AS A 1 6 ? -5.070 14.335 14.646 0.52 26.91 ? 6 AS A "C1'" 1
HETATM 136 C "C1'" B AS A 1 6 ? -5.062 14.330 14.653 0.48 26.82 ? 6 AS A "C1'" 1
HETATM 137 N N9 . AS A 1 6 ? -5.516 13.279 13.757 1.00 24.81 ? 6 AS A N9 1
HETATM 138 C C8 . AS A 1 6 ? -5.973 12.074 14.139 1.00 27.92 ? 6 AS A C8 1
HETATM 139 N N7 . AS A 1 6 ? -6.286 11.300 13.146 1.00 28.45 ? 6 AS A N7 1
HETATM 140 C C5 . AS A 1 6 ? -6.014 12.052 12.039 1.00 25.41 ? 6 AS A C5 1
HETATM 141 C C6 . AS A 1 6 ? -6.139 11.776 10.670 1.00 27.15 ? 6 AS A C6 1
HETATM 142 N N6 . AS A 1 6 ? -6.592 10.628 10.162 1.00 29.49 ? 6 AS A N6 1
HETATM 143 N N1 . AS A 1 6 ? -5.780 12.741 9.833 1.00 26.14 ? 6 AS A N1 1
HETATM 144 C C2 . AS A 1 6 ? -5.321 13.884 10.331 1.00 24.70 ? 6 AS A C2 1
HETATM 145 N N3 . AS A 1 6 ? -5.164 14.242 11.589 1.00 23.73 ? 6 AS A N3 1
HETATM 146 C C4 . AS A 1 6 ? -5.535 13.273 12.399 1.00 22.80 ? 6 AS A C4 1
HETATM 147 N N1 . BRU A 1 7 ? -6.220 16.124 22.842 1.00 23.28 ? 7 BRU A N1 1
HETATM 148 C C2 . BRU A 1 7 ? -6.168 15.609 24.220 1.00 21.95 ? 7 BRU A C2 1
HETATM 149 N N3 . BRU A 1 7 ? -5.653 14.238 24.483 1.00 21.84 ? 7 BRU A N3 1
HETATM 150 C C4 . BRU A 1 7 ? -5.236 13.431 23.361 1.00 23.20 ? 7 BRU A C4 1
HETATM 151 C C5 . BRU A 1 7 ? -5.302 13.984 22.004 1.00 24.89 ? 7 BRU A C5 1
HETATM 152 C C6 . BRU A 1 7 ? -5.801 15.319 21.724 1.00 22.10 ? 7 BRU A C6 1
HETATM 153 O O2 . BRU A 1 7 ? -6.537 16.284 25.116 1.00 24.24 ? 7 BRU A O2 1
HETATM 154 O O4 . BRU A 1 7 ? -4.846 12.346 23.505 1.00 26.10 ? 7 BRU A O4 1
HETATM 155 BR BR . BRU A 1 7 ? -4.710 12.844 20.544 1.00 35.71 ? 7 BRU A BR 1
HETATM 156 C "C1'" . BRU A 1 7 ? -6.717 17.447 22.573 1.00 31.63 ? 7 BRU A "C1'" 1
HETATM 157 C "C2'" . BRU A 1 7 ? -5.745 18.288 22.279 1.00 30.33 ? 7 BRU A "C2'" 1
HETATM 158 C "C3'" . BRU A 1 7 ? -6.399 19.251 21.125 1.00 36.74 ? 7 BRU A "C3'" 1
HETATM 159 C "C4'" . BRU A 1 7 ? -7.169 18.428 20.325 1.00 27.95 ? 7 BRU A "C4'" 1
HETATM 160 O "O3'" . BRU A 1 7 ? -7.243 20.198 21.771 1.00 35.32 ? 7 BRU A "O3'" 1
HETATM 161 O "O4'" . BRU A 1 7 ? -7.603 17.287 21.232 1.00 30.49 ? 7 BRU A "O4'" 1
HETATM 162 C "C5'" . BRU A 1 7 ? -6.426 17.833 19.128 1.00 27.55 ? 7 BRU A "C5'" 1
HETATM 163 O "O5'" . BRU A 1 7 ? -5.134 17.411 19.448 1.00 26.84 ? 7 BRU A "O5'" 1
HETATM 164 P P . BRU A 1 7 ? -4.151 17.174 18.192 1.00 26.11 ? 7 BRU A P 1
HETATM 165 O OP1 . BRU A 1 7 ? -3.866 18.512 17.577 1.00 31.34 ? 7 BRU A OP1 1
HETATM 166 O OP2 . BRU A 1 7 ? -2.906 16.487 18.676 1.00 31.83 ? 7 BRU A OP2 1
ATOM 167 P P . DC A 1 8 ? -6.958 21.769 21.617 1.00 37.76 ? 8 DC A P 1
ATOM 168 O OP1 . DC A 1 8 ? -8.169 22.488 22.046 1.00 35.86 ? 8 DC A OP1 1
ATOM 169 O OP2 . DC A 1 8 ? -6.377 21.990 20.265 1.00 35.96 ? 8 DC A OP2 1
ATOM 170 O "O5'" . DC A 1 8 ? -5.796 22.045 22.661 1.00 33.83 ? 8 DC A "O5'" 1
ATOM 171 C "C5'" . DC A 1 8 ? -6.013 21.853 24.041 1.00 35.08 ? 8 DC A "C5'" 1
ATOM 172 C "C4'" . DC A 1 8 ? -4.691 21.867 24.771 1.00 33.50 ? 8 DC A "C4'" 1
ATOM 173 O "O4'" . DC A 1 8 ? -4.091 20.546 24.709 1.00 32.32 ? 8 DC A "O4'" 1
ATOM 174 C "C3'" . DC A 1 8 ? -3.651 22.822 24.177 1.00 33.81 ? 8 DC A "C3'" 1
ATOM 175 O "O3'" . DC A 1 8 ? -2.885 23.383 25.211 1.00 36.75 ? 8 DC A "O3'" 1
ATOM 176 C "C2'" . DC A 1 8 ? -2.804 21.904 23.307 1.00 33.02 ? 8 DC A "C2'" 1
ATOM 177 C "C1'" . DC A 1 8 ? -2.791 20.651 24.164 1.00 36.88 ? 8 DC A "C1'" 1
ATOM 178 N N1 . DC A 1 8 ? -2.540 19.422 23.424 1.00 34.05 ? 8 DC A N1 1
ATOM 179 C C2 . DC A 1 8 ? -2.495 18.236 24.127 1.00 33.46 ? 8 DC A C2 1
ATOM 180 O O2 . DC A 1 8 ? -2.645 18.273 25.350 1.00 35.27 ? 8 DC A O2 1
ATOM 181 N N3 . DC A 1 8 ? -2.288 17.084 23.458 1.00 32.73 ? 8 DC A N3 1
ATOM 182 C C4 . DC A 1 8 ? -2.142 17.105 22.139 1.00 30.39 ? 8 DC A C4 1
ATOM 183 N N4 . DC A 1 8 ? -1.940 15.947 21.522 1.00 32.78 ? 8 DC A N4 1
ATOM 184 C C5 . DC A 1 8 ? -2.177 18.317 21.397 1.00 30.74 ? 8 DC A C5 1
ATOM 185 C C6 . DC A 1 8 ? -2.385 19.446 22.076 1.00 31.81 ? 8 DC A C6 1
ATOM 186 P P . DG A 1 9 ? -3.388 24.718 25.943 1.00 43.90 ? 9 DG A P 1
ATOM 187 O OP1 . DG A 1 9 ? -4.816 24.531 26.294 1.00 42.12 ? 9 DG A OP1 1
ATOM 188 O OP2 . DG A 1 9 ? -2.923 25.838 25.093 1.00 36.54 ? 9 DG A OP2 1
ATOM 189 O "O5'" . DG A 1 9 ? -2.593 24.730 27.318 1.00 34.23 ? 9 DG A "O5'" 1
ATOM 190 C "C5'" . DG A 1 9 ? -2.931 23.800 28.338 1.00 31.14 ? 9 DG A "C5'" 1
ATOM 191 C "C4'" . DG A 1 9 ? -1.675 23.249 28.999 1.00 38.20 ? 9 DG A "C4'" 1
ATOM 192 O "O4'" . DG A 1 9 ? -1.149 22.149 28.207 1.00 35.68 ? 9 DG A "O4'" 1
ATOM 193 C "C3'" . DG A 1 9 ? -0.505 24.236 29.117 1.00 40.42 ? 9 DG A "C3'" 1
ATOM 194 O "O3'" . DG A 1 9 ? 0.339 23.845 30.195 1.00 41.75 ? 9 DG A "O3'" 1
ATOM 195 C "C2'" . DG A 1 9 ? 0.214 24.006 27.802 1.00 34.18 ? 9 DG A "C2'" 1
ATOM 196 C "C1'" . DG A 1 9 ? 0.157 22.491 27.766 1.00 36.26 ? 9 DG A "C1'" 1
ATOM 197 N N9 . DG A 1 9 ? 0.347 21.940 26.453 1.00 34.53 ? 9 DG A N9 1
ATOM 198 C C8 . DG A 1 9 ? 0.388 22.623 25.270 1.00 34.72 ? 9 DG A C8 1
ATOM 199 N N7 . DG A 1 9 ? 0.570 21.853 24.240 1.00 35.09 ? 9 DG A N7 1
ATOM 200 C C5 . DG A 1 9 ? 0.645 20.580 24.782 1.00 33.29 ? 9 DG A C5 1
ATOM 201 C C6 . DG A 1 9 ? 0.829 19.340 24.150 1.00 33.45 ? 9 DG A C6 1
ATOM 202 O O6 . DG A 1 9 ? 0.964 19.112 22.949 1.00 35.32 ? 9 DG A O6 1
ATOM 203 N N1 . DG A 1 9 ? 0.842 18.295 25.063 1.00 35.89 ? 9 DG A N1 1
ATOM 204 C C2 . DG A 1 9 ? 0.698 18.438 26.419 1.00 31.79 ? 9 DG A C2 1
ATOM 205 N N2 . DG A 1 9 ? 0.740 17.318 27.138 1.00 33.71 ? 9 DG A N2 1
ATOM 206 N N3 . DG A 1 9 ? 0.524 19.598 27.027 1.00 36.14 ? 9 DG A N3 1
ATOM 207 C C4 . DG A 1 9 ? 0.503 20.620 26.143 1.00 34.21 ? 9 DG A C4 1
ATOM 208 P P . DG A 1 10 ? 0.255 24.569 31.622 1.00 36.96 ? 10 DG A P 1
ATOM 209 O OP1 . DG A 1 10 ? -1.138 24.517 32.098 1.00 30.44 ? 10 DG A OP1 1
ATOM 210 O OP2 . DG A 1 10 ? 0.934 25.882 31.490 1.00 50.91 ? 10 DG A OP2 1
ATOM 211 O "O5'" . DG A 1 10 ? 1.140 23.614 32.544 1.00 33.65 ? 10 DG A "O5'" 1
ATOM 212 C "C5'" . DG A 1 10 ? 0.722 22.282 32.745 1.00 31.35 ? 10 DG A "C5'" 1
ATOM 213 C "C4'" . DG A 1 10 ? 1.900 21.331 32.820 1.00 33.60 ? 10 DG A "C4'" 1
ATOM 214 O "O4'" . DG A 1 10 ? 2.337 20.966 31.486 1.00 35.75 ? 10 DG A "O4'" 1
ATOM 215 C "C3'" . DG A 1 10 ? 3.140 21.865 33.506 1.00 34.82 ? 10 DG A "C3'" 1
ATOM 216 O "O3'" . DG A 1 10 ? 3.852 20.769 34.030 1.00 35.03 ? 10 DG A "O3'" 1
ATOM 217 C "C2'" . DG A 1 10 ? 3.899 22.487 32.341 1.00 37.32 ? 10 DG A "C2'" 1
ATOM 218 C "C1'" . DG A 1 10 ? 3.661 21.427 31.276 1.00 39.19 ? 10 DG A "C1'" 1
ATOM 219 N N9 . DG A 1 10 ? 3.715 21.920 29.922 1.00 36.66 ? 10 DG A N9 1
ATOM 220 C C8 . DG A 1 10 ? 3.582 23.221 29.501 1.00 35.35 ? 10 DG A C8 1
ATOM 221 N N7 . DG A 1 10 ? 3.645 23.344 28.203 1.00 40.92 ? 10 DG A N7 1
ATOM 222 C C5 . DG A 1 10 ? 3.810 22.037 27.743 1.00 34.82 ? 10 DG A C5 1
ATOM 223 C C6 . DG A 1 10 ? 3.931 21.539 26.426 1.00 35.62 ? 10 DG A C6 1
ATOM 224 O O6 . DG A 1 10 ? 3.911 22.170 25.365 1.00 37.88 ? 10 DG A O6 1
ATOM 225 N N1 . DG A 1 10 ? 4.081 20.156 26.408 1.00 34.47 ? 10 DG A N1 1
ATOM 226 C C2 . DG A 1 10 ? 4.110 19.359 27.525 1.00 36.63 ? 10 DG A C2 1
ATOM 227 N N2 . DG A 1 10 ? 4.264 18.045 27.317 1.00 37.46 ? 10 DG A N2 1
ATOM 228 N N3 . DG A 1 10 ? 4.001 19.814 28.759 1.00 35.93 ? 10 DG A N3 1
ATOM 229 C C4 . DG A 1 10 ? 3.850 21.157 28.790 1.00 35.63 ? 10 DG A C4 1
ATOM 230 O "O5'" . DC B 1 1 ? -18.788 15.185 15.479 1.00 40.56 ? 11 DC B "O5'" 1
ATOM 231 C "C5'" . DC B 1 1 ? -18.501 14.214 14.460 1.00 39.32 ? 11 DC B "C5'" 1
ATOM 232 C "C4'" . DC B 1 1 ? -19.713 13.950 13.583 1.00 42.91 ? 11 DC B "C4'" 1
ATOM 233 O "O4'" . DC B 1 1 ? -20.330 15.209 13.244 1.00 38.42 ? 11 DC B "O4'" 1
ATOM 234 C "C3'" . DC B 1 1 ? -19.381 13.338 12.239 1.00 38.56 ? 11 DC B "C3'" 1
ATOM 235 O "O3'" . DC B 1 1 ? -20.547 12.813 11.651 1.00 36.88 ? 11 DC B "O3'" 1
ATOM 236 C "C2'" . DC B 1 1 ? -18.887 14.568 11.484 1.00 39.86 ? 11 DC B "C2'" 1
ATOM 237 C "C1'" . DC B 1 1 ? -19.879 15.623 11.969 1.00 39.24 ? 11 DC B "C1'" 1
ATOM 238 N N1 . DC B 1 1 ? -19.312 16.980 12.116 1.00 35.77 ? 11 DC B N1 1
ATOM 239 C C2 . DC B 1 1 ? -19.110 17.777 10.987 1.00 36.79 ? 11 DC B C2 1
ATOM 240 O O2 . DC B 1 1 ? -19.377 17.319 9.870 1.00 35.15 ? 11 DC B O2 1
ATOM 241 N N3 . DC B 1 1 ? -18.618 19.028 11.150 1.00 35.42 ? 11 DC B N3 1
ATOM 242 C C4 . DC B 1 1 ? -18.346 19.480 12.375 1.00 33.02 ? 11 DC B C4 1
ATOM 243 N N4 . DC B 1 1 ? -17.871 20.716 12.493 1.00 36.55 ? 11 DC B N4 1
ATOM 244 C C5 . DC B 1 1 ? -18.558 18.688 13.530 1.00 33.08 ? 11 DC B C5 1
ATOM 245 C C6 . DC B 1 1 ? -19.051 17.459 13.355 1.00 33.90 ? 11 DC B C6 1
ATOM 246 P P . DC B 1 2 ? -20.658 11.241 11.327 1.00 44.88 ? 12 DC B P 1
ATOM 247 O OP1 . DC B 1 2 ? -21.768 11.020 10.366 1.00 40.57 ? 12 DC B OP1 1
ATOM 248 O OP2 . DC B 1 2 ? -20.657 10.563 12.636 1.00 49.70 ? 12 DC B OP2 1
ATOM 249 O "O5'" . DC B 1 2 ? -19.313 10.910 10.535 1.00 42.43 ? 12 DC B "O5'" 1
ATOM 250 C "C5'" . DC B 1 2 ? -19.128 11.406 9.196 1.00 41.19 ? 12 DC B "C5'" 1
ATOM 251 C "C4'" . DC B 1 2 ? -17.669 11.316 8.787 1.00 35.77 ? 12 DC B "C4'" 1
ATOM 252 O "O4'" . DC B 1 2 ? -17.006 12.572 9.064 1.00 35.53 ? 12 DC B "O4'" 1
ATOM 253 C "C3'" . DC B 1 2 ? -16.876 10.250 9.535 1.00 38.42 ? 12 DC B "C3'" 1
ATOM 254 O "O3'" . DC B 1 2 ? -15.971 9.611 8.668 1.00 46.11 ? 12 DC B "O3'" 1
ATOM 255 C "C2'" . DC B 1 2 ? -16.132 11.057 10.592 1.00 35.16 ? 12 DC B "C2'" 1
ATOM 256 C "C1'" . DC B 1 2 ? -15.851 12.333 9.832 1.00 34.41 ? 12 DC B "C1'" 1
ATOM 257 N N1 . DC B 1 2 ? -15.655 13.489 10.699 1.00 30.14 ? 12 DC B N1 1
ATOM 258 C C2 . DC B 1 2 ? -15.497 14.730 10.122 1.00 31.37 ? 12 DC B C2 1
ATOM 259 O O2 . DC B 1 2 ? -15.519 14.815 8.887 1.00 36.12 ? 12 DC B O2 1
ATOM 260 N N3 . DC B 1 2 ? -15.320 15.810 10.922 1.00 34.40 ? 12 DC B N3 1
ATOM 261 C C4 . DC B 1 2 ? -15.306 15.661 12.245 1.00 34.10 ? 12 DC B C4 1
ATOM 262 N N4 . DC B 1 2 ? -15.138 16.753 12.992 1.00 33.68 ? 12 DC B N4 1
ATOM 263 C C5 . DC B 1 2 ? -15.460 14.385 12.859 1.00 33.99 ? 12 DC B C5 1
ATOM 264 C C6 . DC B 1 2 ? -15.632 13.335 12.053 1.00 34.88 ? 12 DC B C6 1
ATOM 265 P P . DG B 1 3 ? -16.480 8.881 7.333 1.00 41.03 ? 13 DG B P 1
ATOM 266 O OP1 . DG B 1 3 ? -17.947 8.672 7.420 1.00 44.90 ? 13 DG B OP1 1
ATOM 267 O OP2 . DG B 1 3 ? -15.580 7.715 7.183 1.00 44.38 ? 13 DG B OP2 1
ATOM 268 O "O5'" . DG B 1 3 ? -16.159 9.964 6.195 1.00 37.83 ? 13 DG B "O5'" 1
ATOM 269 C "C5'" . DG B 1 3 ? -15.599 9.569 4.973 1.00 32.42 ? 13 DG B "C5'" 1
ATOM 270 C "C4'" . DG B 1 3 ? -14.379 10.405 4.629 1.00 34.29 ? 13 DG B "C4'" 1
ATOM 271 O "O4'" . DG B 1 3 ? -14.054 11.318 5.719 1.00 33.98 ? 13 DG B "O4'" 1
ATOM 272 C "C3'" . DG B 1 3 ? -13.105 9.586 4.413 1.00 34.78 ? 13 DG B "C3'" 1
ATOM 273 O "O3'" . DG B 1 3 ? -12.282 10.269 3.560 1.00 39.08 ? 13 DG B "O3'" 1
ATOM 274 C "C2'" . DG B 1 3 ? -12.501 9.590 5.804 1.00 35.85 ? 13 DG B "C2'" 1
ATOM 275 C "C1'" . DG B 1 3 ? -12.722 11.042 6.149 1.00 34.95 ? 13 DG B "C1'" 1
ATOM 276 N N9 . DG B 1 3 ? -12.614 11.314 7.564 1.00 33.98 ? 13 DG B N9 1
ATOM 277 C C8 . DG B 1 3 ? -12.680 10.404 8.589 1.00 29.48 ? 13 DG B C8 1
ATOM 278 N N7 . DG B 1 3 ? -12.548 10.949 9.769 1.00 32.30 ? 13 DG B N7 1
ATOM 279 C C5 . DG B 1 3 ? -12.385 12.303 9.504 1.00 28.36 ? 13 DG B C5 1
ATOM 280 C C6 . DG B 1 3 ? -12.208 13.383 10.389 1.00 26.97 ? 13 DG B C6 1
ATOM 281 O O6 . DG B 1 3 ? -12.157 13.358 11.624 1.00 26.60 ? 13 DG B O6 1
ATOM 282 N N1 . DG B 1 3 ? -12.084 14.595 9.708 1.00 31.02 ? 13 DG B N1 1
ATOM 283 C C2 . DG B 1 3 ? -12.131 14.735 8.338 1.00 28.00 ? 13 DG B C2 1
ATOM 284 N N2 . DG B 1 3 ? -11.985 15.974 7.861 1.00 28.44 ? 13 DG B N2 1
ATOM 285 N N3 . DG B 1 3 ? -12.299 13.726 7.497 1.00 27.35 ? 13 DG B N3 1
ATOM 286 C C4 . DG B 1 3 ? -12.420 12.543 8.152 1.00 32.13 ? 13 DG B C4 1
ATOM 287 P P . DA B 1 4 ? -12.126 9.809 2.041 1.00 38.11 ? 14 DA B P 1
ATOM 288 O OP1 . DA B 1 4 ? -13.502 9.742 1.511 1.00 37.24 ? 14 DA B OP1 1
ATOM 289 O OP2 . DA B 1 4 ? -11.239 8.618 2.030 1.00 34.97 ? 14 DA B OP2 1
ATOM 290 O "O5'" . DA B 1 4 ? -11.409 11.082 1.387 1.00 36.43 ? 14 DA B "O5'" 1
ATOM 291 C "C5'" . DA B 1 4 ? -12.067 12.329 1.482 1.00 31.54 ? 14 DA B "C5'" 1
ATOM 292 C "C4'" . DA B 1 4 ? -11.097 13.491 1.495 1.00 31.25 ? 14 DA B "C4'" 1
ATOM 293 O "O4'" . DA B 1 4 ? -10.710 13.806 2.849 1.00 36.59 ? 14 DA B "O4'" 1
ATOM 294 C "C3'" . DA B 1 4 ? -9.800 13.315 0.716 1.00 32.08 ? 14 DA B "C3'" 1
ATOM 295 O "O3'" . DA B 1 4 ? -9.437 14.583 0.218 1.00 37.54 ? 14 DA B "O3'" 1
ATOM 296 C "C2'" . DA B 1 4 ? -8.823 12.821 1.782 1.00 34.06 ? 14 DA B "C2'" 1
ATOM 297 C "C1'" . DA B 1 4 ? -9.334 13.511 3.054 1.00 36.66 ? 14 DA B "C1'" 1
ATOM 298 N N9 . DA B 1 4 ? -9.260 12.679 4.248 1.00 33.41 ? 14 DA B N9 1
ATOM 299 C C8 . DA B 1 4 ? -9.365 11.324 4.311 1.00 33.67 ? 14 DA B C8 1
ATOM 300 N N7 . DA B 1 4 ? -9.309 10.847 5.530 1.00 33.83 ? 14 DA B N7 1
ATOM 301 C C5 . DA B 1 4 ? -9.179 11.967 6.321 1.00 27.57 ? 14 DA B C5 1
ATOM 302 C C6 . DA B 1 4 ? -9.070 12.133 7.711 1.00 26.90 ? 14 DA B C6 1
ATOM 303 N N6 . DA B 1 4 ? -9.082 11.119 8.580 1.00 26.22 ? 14 DA B N6 1
ATOM 304 N N1 . DA B 1 4 ? -8.965 13.382 8.178 1.00 26.56 ? 14 DA B N1 1
ATOM 305 C C2 . DA B 1 4 ? -8.957 14.394 7.308 1.00 31.05 ? 14 DA B C2 1
ATOM 306 N N3 . DA B 1 4 ? -9.044 14.360 5.977 1.00 31.05 ? 14 DA B N3 1
ATOM 307 C C4 . DA B 1 4 ? -9.160 13.105 5.548 1.00 28.43 ? 14 DA B C4 1
ATOM 308 P P . DT B 1 5 ? -7.993 14.881 -0.419 1.00 40.17 ? 15 DT B P 1
ATOM 309 O OP1 . DT B 1 5 ? -8.218 16.114 -1.201 1.00 31.39 ? 15 DT B OP1 1
ATOM 310 O OP2 . DT B 1 5 ? -7.402 13.668 -1.005 1.00 32.04 ? 15 DT B OP2 1
ATOM 311 O "O5'" . DT B 1 5 ? -7.085 15.267 0.828 1.00 38.02 ? 15 DT B "O5'" 1
ATOM 312 C "C5'" . DT B 1 5 ? -7.356 16.433 1.568 1.00 31.51 ? 15 DT B "C5'" 1
ATOM 313 C "C4'" . DT B 1 5 ? -6.328 16.591 2.666 1.00 36.59 ? 15 DT B "C4'" 1
ATOM 314 O "O4'" . DT B 1 5 ? -6.613 15.671 3.748 1.00 38.01 ? 15 DT B "O4'" 1
ATOM 315 C "C3'" . DT B 1 5 ? -4.872 16.297 2.250 1.00 35.40 ? 15 DT B "C3'" 1
ATOM 316 O "O3'" . DT B 1 5 ? -4.074 17.353 2.660 1.00 44.64 ? 15 DT B "O3'" 1
ATOM 317 C "C2'" . DT B 1 5 ? -4.525 15.033 3.040 1.00 29.10 ? 15 DT B "C2'" 1
ATOM 318 C "C1'" . DT B 1 5 ? -5.385 15.248 4.263 1.00 31.80 ? 15 DT B "C1'" 1
ATOM 319 N N1 . DT B 1 5 ? -5.587 14.041 5.073 1.00 33.68 ? 15 DT B N1 1
ATOM 320 C C2 . DT B 1 5 ? -5.574 14.147 6.457 1.00 34.68 ? 15 DT B C2 1
ATOM 321 O O2 . DT B 1 5 ? -5.432 15.205 7.061 1.00 32.02 ? 15 DT B O2 1
ATOM 322 N N3 . DT B 1 5 ? -5.747 12.970 7.115 1.00 28.20 ? 15 DT B N3 1
ATOM 323 C C4 . DT B 1 5 ? -5.925 11.724 6.564 1.00 28.70 ? 15 DT B C4 1
ATOM 324 O O4 . DT B 1 5 ? -6.070 10.723 7.260 1.00 33.96 ? 15 DT B O4 1
ATOM 325 C C5 . DT B 1 5 ? -5.930 11.678 5.118 1.00 32.48 ? 15 DT B C5 1
ATOM 326 C C7 . DT B 1 5 ? -6.114 10.368 4.406 1.00 30.25 ? 15 DT B C7 1
ATOM 327 C C6 . DT B 1 5 ? -5.754 12.830 4.448 1.00 30.27 ? 15 DT B C6 1
HETATM 328 P P . AS B 1 6 ? -2.889 17.951 1.790 1.00 45.06 ? 16 AS B P 1
HETATM 329 O OP1 . AS B 1 6 ? -3.571 18.879 0.820 1.00 50.29 ? 16 AS B OP1 1
HETATM 330 S S2P . AS B 1 6 ? -1.650 16.522 1.286 1.00 51.36 ? 16 AS B S2P 1
HETATM 331 O "O5'" . AS B 1 6 ? -2.052 18.682 2.954 1.00 34.21 ? 16 AS B "O5'" 1
HETATM 332 C "C5'" . AS B 1 6 ? -2.740 19.466 3.927 1.00 39.22 ? 16 AS B "C5'" 1
HETATM 333 C "C4'" . AS B 1 6 ? -2.120 19.414 5.309 1.00 33.68 ? 16 AS B "C4'" 1
HETATM 334 O "O4'" . AS B 1 6 ? -2.403 18.136 5.920 1.00 34.57 ? 16 AS B "O4'" 1
HETATM 335 C "C3'" . AS B 1 6 ? -0.602 19.589 5.393 1.00 40.32 ? 16 AS B "C3'" 1
HETATM 336 O "O3'" . AS B 1 6 ? -0.252 20.392 6.531 1.00 38.17 ? 16 AS B "O3'" 1
HETATM 337 C "C2'" . AS B 1 6 ? -0.100 18.142 5.525 1.00 38.21 ? 16 AS B "C2'" 1
HETATM 338 C "C1'" . AS B 1 6 ? -1.215 17.494 6.332 1.00 36.68 ? 16 AS B "C1'" 1
HETATM 339 N N9 . AS B 1 6 ? -1.461 16.095 6.036 1.00 31.66 ? 16 AS B N9 1
HETATM 340 C C8 . AS B 1 6 ? -1.447 15.510 4.818 1.00 35.84 ? 16 AS B C8 1
HETATM 341 N N7 . AS B 1 6 ? -1.729 14.237 4.847 1.00 35.06 ? 16 AS B N7 1
HETATM 342 C C5 . AS B 1 6 ? -1.958 13.984 6.174 1.00 27.93 ? 16 AS B C5 1
HETATM 343 C C6 . AS B 1 6 ? -2.304 12.816 6.860 1.00 29.52 ? 16 AS B C6 1
HETATM 344 N N6 . AS B 1 6 ? -2.497 11.635 6.271 1.00 32.41 ? 16 AS B N6 1
HETATM 345 N N1 . AS B 1 6 ? -2.442 12.899 8.180 1.00 31.36 ? 16 AS B N1 1
HETATM 346 C C2 . AS B 1 6 ? -2.257 14.075 8.769 1.00 34.86 ? 16 AS B C2 1
HETATM 347 N N3 . AS B 1 6 ? -1.939 15.236 8.219 1.00 40.18 ? 16 AS B N3 1
HETATM 348 C C4 . AS B 1 6 ? -1.800 15.115 6.910 1.00 28.10 ? 16 AS B C4 1
HETATM 349 N N1 . BRU B 1 7 ? 1.675 15.338 8.564 1.00 38.62 ? 17 BRU B N1 1
HETATM 350 C C2 . BRU B 1 7 ? 1.255 13.994 9.005 1.00 35.99 ? 17 BRU B C2 1
HETATM 351 N N3 . BRU B 1 7 ? 1.081 12.891 8.006 1.00 30.33 ? 17 BRU B N3 1
HETATM 352 C C4 . BRU B 1 7 ? 1.323 13.176 6.607 1.00 30.23 ? 17 BRU B C4 1
HETATM 353 C C5 . BRU B 1 7 ? 1.730 14.525 6.213 1.00 26.71 ? 17 BRU B C5 1
HETATM 354 C C6 . BRU B 1 7 ? 1.900 15.617 7.164 1.00 28.00 ? 17 BRU B C6 1
HETATM 355 O O2 . BRU B 1 7 ? 1.056 13.804 10.159 1.00 41.56 ? 17 BRU B O2 1
HETATM 356 O O4 . BRU B 1 7 ? 1.204 12.360 5.773 1.00 31.58 ? 17 BRU B O4 1
HETATM 357 BR BR . BRU B 1 7 ? 2.051 14.791 4.310 1.00 52.11 ? 17 BRU B BR 1
HETATM 358 C "C1'" . BRU B 1 7 ? 1.811 16.390 9.554 1.00 36.21 ? 17 BRU B "C1'" 1
HETATM 359 C "C2'" . BRU B 1 7 ? 2.931 17.036 9.396 1.00 38.63 ? 17 BRU B "C2'" 1
HETATM 360 C "C3'" . BRU B 1 7 ? 2.621 18.559 9.906 1.00 44.29 ? 17 BRU B "C3'" 1
HETATM 361 C "C4'" . BRU B 1 7 ? 1.276 18.782 9.735 1.00 40.96 ? 17 BRU B "C4'" 1
HETATM 362 O "O3'" . BRU B 1 7 ? 2.901 18.679 11.289 1.00 41.86 ? 17 BRU B "O3'" 1
HETATM 363 O "O4'" . BRU B 1 7 ? 0.694 17.484 9.189 1.00 39.56 ? 17 BRU B "O4'" 1
HETATM 364 C "C5'" . BRU B 1 7 ? 1.029 19.929 8.756 1.00 37.59 ? 17 BRU B "C5'" 1
HETATM 365 O "O5'" . BRU B 1 7 ? 1.781 19.721 7.606 1.00 41.64 ? 17 BRU B "O5'" 1
HETATM 366 P P . BRU B 1 7 ? 1.284 20.555 6.329 1.00 45.13 ? 17 BRU B P 1
HETATM 367 O OP1 . BRU B 1 7 ? 1.274 22.018 6.713 1.00 44.99 ? 17 BRU B OP1 1
HETATM 368 O OP2 . BRU B 1 7 ? 2.157 20.273 5.114 1.00 39.45 ? 17 BRU B OP2 1
ATOM 369 P P . DC B 1 8 ? 4.398 18.503 11.837 1.00 42.64 ? 18 DC B P 1
ATOM 370 O OP1 . DC B 1 8 ? 4.597 19.584 12.830 1.00 54.90 ? 18 DC B OP1 1
ATOM 371 O OP2 . DC B 1 8 ? 5.351 18.301 10.721 1.00 44.25 ? 18 DC B OP2 1
ATOM 372 O "O5'" . DC B 1 8 ? 4.343 17.125 12.627 1.00 44.36 ? 18 DC B "O5'" 1
ATOM 373 C "C5'" . DC B 1 8 ? 3.160 16.756 13.293 1.00 41.84 ? 18 DC B "C5'" 1
ATOM 374 C "C4'" . DC B 1 8 ? 3.273 15.346 13.813 1.00 41.21 ? 18 DC B "C4'" 1
ATOM 375 O "O4'" . DC B 1 8 ? 3.069 14.392 12.730 1.00 41.68 ? 18 DC B "O4'" 1
ATOM 376 C "C3'" . DC B 1 8 ? 4.620 15.001 14.405 1.00 46.30 ? 18 DC B "C3'" 1
ATOM 377 O "O3'" . DC B 1 8 ? 4.419 14.113 15.452 1.00 45.09 ? 18 DC B "O3'" 1
ATOM 378 C "C2'" . DC B 1 8 ? 5.342 14.319 13.231 1.00 44.34 ? 18 DC B "C2'" 1
ATOM 379 C "C1'" . DC B 1 8 ? 4.189 13.530 12.641 1.00 42.17 ? 18 DC B "C1'" 1
ATOM 380 N N1 . DC B 1 8 ? 4.358 13.155 11.219 1.00 41.91 ? 18 DC B N1 1
ATOM 381 C C2 . DC B 1 8 ? 4.095 11.846 10.825 1.00 38.79 ? 18 DC B C2 1
ATOM 382 O O2 . DC B 1 8 ? 3.754 11.016 11.686 1.00 39.80 ? 18 DC B O2 1
ATOM 383 N N3 . DC B 1 8 ? 4.216 11.520 9.511 1.00 36.97 ? 18 DC B N3 1
ATOM 384 C C4 . DC B 1 8 ? 4.580 12.451 8.624 1.00 33.27 ? 18 DC B C4 1
ATOM 385 N N4 . DC B 1 8 ? 4.687 12.087 7.343 1.00 36.02 ? 18 DC B N4 1
ATOM 386 C C5 . DC B 1 8 ? 4.852 13.792 9.011 1.00 32.65 ? 18 DC B C5 1
ATOM 387 C C6 . DC B 1 8 ? 4.722 14.099 10.304 1.00 38.30 ? 18 DC B C6 1
ATOM 388 P P . DG B 1 9 ? 5.631 13.775 16.435 1.00 52.84 ? 19 DG B P 1
ATOM 389 O OP1 . DG B 1 9 ? 5.037 13.670 17.778 1.00 53.87 ? 19 DG B OP1 1
ATOM 390 O OP2 . DG B 1 9 ? 6.740 14.707 16.110 1.00 49.01 ? 19 DG B OP2 1
ATOM 391 O "O5'" . DG B 1 9 ? 6.105 12.324 16.004 1.00 40.38 ? 19 DG B "O5'" 1
ATOM 392 C "C5'" . DG B 1 9 ? 5.178 11.267 15.933 1.00 43.43 ? 19 DG B "C5'" 1
ATOM 393 C "C4'" . DG B 1 9 ? 5.895 9.985 15.572 1.00 41.69 ? 19 DG B "C4'" 1
ATOM 394 O "O4'" . DG B 1 9 ? 6.039 9.900 14.127 1.00 42.94 ? 19 DG B "O4'" 1
ATOM 395 C "C3'" . DG B 1 9 ? 7.311 9.893 16.122 1.00 48.54 ? 19 DG B "C3'" 1
ATOM 396 O "O3'" . DG B 1 9 ? 7.629 8.542 16.356 1.00 49.94 ? 19 DG B "O3'" 1
ATOM 397 C "C2'" . DG B 1 9 ? 8.137 10.460 14.970 1.00 43.41 ? 19 DG B "C2'" 1
ATOM 398 C "C1'" . DG B 1 9 ? 7.407 9.833 13.801 1.00 39.39 ? 19 DG B "C1'" 1
ATOM 399 N N9 . DG B 1 9 ? 7.619 10.509 12.539 1.00 39.15 ? 19 DG B N9 1
ATOM 400 C C8 . DG B 1 9 ? 8.062 11.794 12.344 1.00 41.06 ? 19 DG B C8 1
ATOM 401 N N7 . DG B 1 9 ? 8.162 12.117 11.083 1.00 41.32 ? 19 DG B N7 1
ATOM 402 C C5 . DG B 1 9 ? 7.764 10.966 10.404 1.00 34.38 ? 19 DG B C5 1
ATOM 403 C C6 . DG B 1 9 ? 7.660 10.710 9.021 1.00 31.48 ? 19 DG B C6 1
ATOM 404 O O6 . DG B 1 9 ? 7.900 11.466 8.079 1.00 38.10 ? 19 DG B O6 1
ATOM 405 N N1 . DG B 1 9 ? 7.220 9.421 8.769 1.00 32.38 ? 19 DG B N1 1
ATOM 406 C C2 . DG B 1 9 ? 6.918 8.494 9.727 1.00 31.55 ? 19 DG B C2 1
ATOM 407 N N2 . DG B 1 9 ? 6.507 7.300 9.286 1.00 39.76 ? 19 DG B N2 1
ATOM 408 N N3 . DG B 1 9 ? 7.001 8.718 11.023 1.00 36.95 ? 19 DG B N3 1
ATOM 409 C C4 . DG B 1 9 ? 7.430 9.973 11.287 1.00 36.80 ? 19 DG B C4 1
ATOM 410 P P . DG B 1 10 ? 7.976 8.046 17.837 1.00 49.41 ? 20 DG B P 1
ATOM 411 O OP1 . DG B 1 10 ? 6.732 8.133 18.635 1.00 42.46 ? 20 DG B OP1 1
ATOM 412 O OP2 . DG B 1 10 ? 9.230 8.724 18.255 1.00 36.94 ? 20 DG B OP2 1
ATOM 413 O "O5'" . DG B 1 10 ? 8.295 6.512 17.641 1.00 37.26 ? 20 DG B "O5'" 1
ATOM 414 C "C5'" . DG B 1 10 ? 7.294 5.631 17.202 1.00 36.78 ? 20 DG B "C5'" 1
ATOM 415 C "C4'" . DG B 1 10 ? 7.877 4.652 16.208 1.00 44.05 ? 20 DG B "C4'" 1
ATOM 416 O "O4'" . DG B 1 10 ? 8.147 5.349 14.963 1.00 43.47 ? 20 DG B "O4'" 1
ATOM 417 C "C3'" . DG B 1 10 ? 9.210 4.043 16.625 1.00 36.84 ? 20 DG B "C3'" 1
ATOM 418 O "O3'" . DG B 1 10 ? 9.328 2.759 16.080 1.00 45.85 ? 20 DG B "O3'" 1
ATOM 419 C "C2'" . DG B 1 10 ? 10.209 4.986 15.985 1.00 41.70 ? 20 DG B "C2'" 1
ATOM 420 C "C1'" . DG B 1 10 ? 9.515 5.264 14.664 1.00 41.52 ? 20 DG B "C1'" 1
ATOM 421 N N9 . DG B 1 10 ? 9.932 6.510 14.051 1.00 41.60 ? 20 DG B N9 1
ATOM 422 C C8 . DG B 1 10 ? 10.394 7.634 14.698 1.00 43.27 ? 20 DG B C8 1
ATOM 423 N N7 . DG B 1 10 ? 10.718 8.604 13.883 1.00 37.57 ? 20 DG B N7 1
ATOM 424 C C5 . DG B 1 10 ? 10.449 8.087 12.616 1.00 35.54 ? 20 DG B C5 1
ATOM 425 C C6 . DG B 1 10 ? 10.608 8.679 11.344 1.00 34.72 ? 20 DG B C6 1
ATOM 426 O O6 . DG B 1 10 ? 11.013 9.823 11.077 1.00 32.39 ? 20 DG B O6 1
ATOM 427 N N1 . DG B 1 10 ? 10.234 7.810 10.324 1.00 30.89 ? 20 DG B N1 1
ATOM 428 C C2 . DG B 1 10 ? 9.766 6.528 10.509 1.00 35.36 ? 20 DG B C2 1
ATOM 429 N N2 . DG B 1 10 ? 9.447 5.851 9.397 1.00 35.17 ? 20 DG B N2 1
ATOM 430 N N3 . DG B 1 10 ? 9.605 5.958 11.695 1.00 31.49 ? 20 DG B N3 1
ATOM 431 C C4 . DG B 1 10 ? 9.967 6.797 12.702 1.00 36.92 ? 20 DG B C4 1
HETATM 432 CA CA . CA C 2 . ? -14.957 15.063 3.967 1.00 48.92 ? 101 CA B CA 1
HETATM 433 O O . HOH D 3 . ? 0.047 13.973 12.319 1.00 30.44 ? 101 HOH A O 1
HETATM 434 O O . HOH D 3 . ? -2.320 20.014 28.048 1.00 34.72 ? 102 HOH A O 1
HETATM 435 O O . HOH D 3 . ? 3.320 11.067 4.001 1.00 38.39 ? 103 HOH A O 1
HETATM 436 O O . HOH D 3 . ? 1.880 0.257 12.117 1.00 49.25 ? 104 HOH A O 1
HETATM 437 O O . HOH D 3 . ? 2.117 16.551 29.478 1.00 42.60 ? 105 HOH A O 1
HETATM 438 O O . HOH D 3 . ? -7.180 21.559 17.491 0.50 41.33 ? 106 HOH A O 1
HETATM 439 O O . HOH D 3 . ? -9.657 23.100 24.523 1.00 36.60 ? 107 HOH A O 1
HETATM 440 O O . HOH D 3 . ? -7.074 11.043 17.965 0.47 29.02 ? 108 HOH A O 1
HETATM 441 O O . HOH D 3 . ? -6.472 25.731 24.083 1.00 42.66 ? 109 HOH A O 1
HETATM 442 O O . HOH D 3 . ? -9.685 20.469 23.881 1.00 39.92 ? 110 HOH A O 1
HETATM 443 O O . HOH D 3 . ? -0.448 17.279 30.041 1.00 33.12 ? 111 HOH A O 1
HETATM 444 O O . HOH D 3 . ? 2.550 -1.257 9.661 1.00 39.08 ? 112 HOH A O 1
HETATM 445 O O A HOH D 3 . ? -5.293 10.304 16.828 0.52 26.95 ? 113 HOH A O 1
HETATM 446 O O . HOH D 3 . ? -3.032 9.607 22.022 1.00 35.08 ? 114 HOH A O 1
HETATM 447 O O . HOH D 3 . ? 2.727 25.970 35.113 1.00 28.86 ? 115 HOH A O 1
HETATM 448 O O . HOH D 3 . ? 6.778 1.106 6.030 1.00 45.01 ? 116 HOH A O 1
HETATM 449 O O . HOH E 3 . ? -12.719 11.554 13.046 1.00 34.74 ? 201 HOH B O 1
HETATM 450 O O . HOH E 3 . ? -14.950 13.532 6.086 1.00 34.99 ? 202 HOH B O 1
HETATM 451 O O . HOH E 3 . ? -20.166 15.346 8.669 1.00 36.07 ? 203 HOH B O 1
HETATM 452 O O . HOH E 3 . ? 8.601 15.082 14.523 1.00 39.23 ? 204 HOH B O 1
HETATM 453 O O . HOH E 3 . ? -9.446 16.548 4.793 1.00 33.28 ? 205 HOH B O 1
HETATM 454 O O . HOH E 3 . ? -12.579 14.679 4.967 1.00 39.07 ? 206 HOH B O 1
HETATM 455 O O . HOH E 3 . ? -17.995 14.481 7.390 1.00 37.04 ? 207 HOH B O 1
HETATM 456 O O . HOH E 3 . ? -11.675 17.435 5.568 1.00 30.76 ? 208 HOH B O 1
HETATM 457 O O . HOH E 3 . ? 5.790 14.441 5.991 1.00 32.04 ? 209 HOH B O 1
HETATM 458 O O . HOH E 3 . ? 9.450 7.920 21.791 1.00 43.36 ? 210 HOH B O 1
HETATM 459 O O . HOH E 3 . ? -6.810 19.113 5.637 1.00 40.90 ? 211 HOH B O 1
HETATM 460 O O . HOH E 3 . ? 0.000 20.553 0.000 0.50 47.16 ? 212 HOH B O 1
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