data_5V5C
#
_entry.id 5V5C
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5V5C pdb_00005v5c 10.2210/pdb5v5c/pdb
WWPDB D_1000226898 ? ?
EMDB EMD-8635 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2018-02-07
2 'Structure model' 1 1 2018-02-14
3 'Structure model' 1 2 2018-06-06
4 'Structure model' 1 3 2019-12-18
5 'Structure model' 1 4 2024-03-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Author supporting evidence'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Refinement description'
4 4 'Structure model' 'Author supporting evidence'
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' pdbx_audit_support
2 3 'Structure model' software
3 4 'Structure model' pdbx_audit_support
4 5 'Structure model' chem_comp_atom
5 5 'Structure model' chem_comp_bond
6 5 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_pdbx_audit_support.funding_organization'
2 4 'Structure model' '_pdbx_audit_support.funding_organization'
3 5 'Structure model' '_database_2.pdbx_DOI'
4 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5V5C
_pdbx_database_status.recvd_initial_deposition_date 2017-03-14
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
EMDB 'VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2' EMD-8635 'associated EM volume'
EMDB 'KVQIINKKLD, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2' EMD-8634 'other EM volume'
PDB . 5V5B unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Seidler, P.M.' 1 ?
'Sawaya, M.R.' 2 0000-0003-0874-9043
'Rodriguez, J.A.' 3 ?
'Eisenberg, D.S.' 4 ?
'Cascio, D.' 5 0000-0002-3877-6803
'Boyer, D.R.' 6 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Nat Chem'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1755-4349
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 10
_citation.language ?
_citation.page_first 170
_citation.page_last 176
_citation.title 'Structure-based inhibitors of tau aggregation.'
_citation.year 2018
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1038/nchem.2889
_citation.pdbx_database_id_PubMed 29359764
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Seidler, P.M.' 1 ?
primary 'Boyer, D.R.' 2 ?
primary 'Rodriguez, J.A.' 3 ?
primary 'Sawaya, M.R.' 4 ?
primary 'Cascio, D.' 5 ?
primary 'Murray, K.' 6 ?
primary 'Gonen, T.' 7 ?
primary 'Eisenberg, D.S.' 8 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description 'Microtubule-associated protein tau'
_entity.formula_weight 714.873
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment 'Repeat 2 peptide (UNP residues 592-597)'
_entity.details ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code VQIINK
_entity_poly.pdbx_seq_one_letter_code_can VQIINK
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 VAL n
1 2 GLN n
1 3 ILE n
1 4 ILE n
1 5 ASN n
1 6 LYS n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 VAL 1 275 275 VAL VAL A . n
A 1 2 GLN 2 276 276 GLN GLN A . n
A 1 3 ILE 3 277 277 ILE ILE A . n
A 1 4 ILE 4 278 278 ILE ILE A . n
A 1 5 ASN 5 279 279 ASN ASN A . n
A 1 6 LYS 6 280 280 LYS LYS A . n
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ?
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1
? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ?
http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 2
? refinement ? ? 'Gerard Bricogne' buster-develop@GlobalPhasing.com ? ? ? ? ?
http://www.globalphasing.com/buster/ ? BUSTER ? ? program . 3
? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'July. 13, 2016' ? ? ? C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.22 4
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ?
. 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 5V5C
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 20.360
_cell.length_a_esd ?
_cell.length_b 43.220
_cell.length_b_esd ?
_cell.length_c 4.820
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 4
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5V5C
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5V5C
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 1.48
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 17.08
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '0.29 M lithium nitrate, 24% PEG3350'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CMOS
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'TVIPS TEMCAM-F416'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2016-08-25
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.0251
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source 'ELECTRON MICROSCOPE'
_diffrn_source.target ?
_diffrn_source.type 'TECNAI F20 TEM'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.0251
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_synchrotron_site ?
#
_reflns.B_iso_Wilson_estimate 5.870
_reflns.entry_id 5V5C
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.250
_reflns.d_resolution_low 10.180
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1226
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3.000
_reflns.percent_possible_obs 86.800
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 4.449
_reflns.pdbx_Rmerge_I_obs 0.239
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 3.580
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.821
_reflns.pdbx_scaling_rejects 5
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.265
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 5454
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.986
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.250 1.310 ? 1.590 ? 267 148 ? 106 71.600 ? ? ? ? 0.475 ? ? ? ? ? ? ? ? 2.519 ? ? ? ? 0.599 ? ? 1 1 0.554 ?
1.310 1.370 ? 1.550 ? 390 153 ? 123 80.400 ? ? ? ? 0.560 ? ? ? ? ? ? ? ? 3.171 ? ? ? ? 0.665 ? ? 2 1 ? ?
1.370 1.440 ? 1.320 ? 447 152 ? 120 78.900 ? ? ? ? 0.825 ? ? ? ? ? ? ? ? 3.725 ? ? ? ? 0.949 ? ? 3 1 ? ?
1.440 1.530 ? 2.110 ? 575 155 ? 131 84.500 ? ? ? ? 0.648 ? ? ? ? ? ? ? ? 4.389 ? ? ? ? 0.725 ? ? 4 1 0.360 ?
1.530 1.640 ? 3.080 ? 606 145 ? 128 88.300 ? ? ? ? 0.398 ? ? ? ? ? ? ? ? 4.734 ? ? ? ? 0.437 ? ? 5 1 0.892 ?
1.640 1.770 ? 2.600 ? 474 114 ? 108 94.700 ? ? ? ? 0.449 ? ? ? ? ? ? ? ? 4.389 ? ? ? ? 0.498 ? ? 6 1 0.553 ?
1.770 1.940 ? 3.280 ? 536 115 ? 109 94.800 ? ? ? ? 0.385 ? ? ? ? ? ? ? ? 4.917 ? ? ? ? 0.423 ? ? 7 1 0.808 ?
1.940 2.170 ? 5.050 ? 626 118 ? 113 95.800 ? ? ? ? 0.297 ? ? ? ? ? ? ? ? 5.540 ? ? ? ? 0.324 ? ? 8 1 0.800 ?
2.170 2.500 ? 5.840 ? 639 110 ? 110 100.000 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 5.809 ? ? ? ? 0.291 ? ? 9 1 0.995 ?
2.500 3.060 ? 5.160 ? 312 76 ? 71 93.400 ? ? ? ? 0.225 ? ? ? ? ? ? ? ? 4.394 ? ? ? ? 0.252 ? ? 10 1 0.935 ?
3.060 4.330 ? 9.400 ? 399 79 ? 71 89.900 ? ? ? ? 0.158 ? ? ? ? ? ? ? ? 5.620 ? ? ? ? 0.175 ? ? 11 1 0.978 ?
4.330 10.180 ? 8.760 ? 183 47 ? 36 76.600 ? ? ? ? 0.132 ? ? ? ? ? ? ? ? 5.083 ? ? ? ? 0.142 ? ? 12 1 0.995 ?
#
_refine.aniso_B[1][1] 0.3575
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][2] -4.8859
_refine.aniso_B[2][3] 0.0000
_refine.aniso_B[3][3] 4.5283
_refine.B_iso_max 49.960
_refine.B_iso_mean 15.3000
_refine.B_iso_min 3.000
_refine.correlation_coeff_Fo_to_Fc 0.9086
_refine.correlation_coeff_Fo_to_Fc_free 0.9428
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5V5C
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.2500
_refine.ls_d_res_low 10.1800
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 1226
_refine.ls_number_reflns_R_free 126
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 87.1400
_refine.ls_percent_reflns_R_free 10.2800
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2244
_refine.ls_R_factor_R_free 0.2664
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2194
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.0700
_refine.pdbx_overall_SU_R_free_Blow_DPI 0.0740
_refine.pdbx_overall_SU_R_Blow_DPI 0.0670
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI 0.0720
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_ls_shell.d_res_high 1.2500
_refine_ls_shell.d_res_low 1.4000
_refine_ls_shell.number_reflns_all 277
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 29
_refine_ls_shell.number_reflns_R_work 248
_refine_ls_shell.percent_reflns_obs 87.1400
_refine_ls_shell.percent_reflns_R_free 10.4700
_refine_ls_shell.R_factor_all 0.2458
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.2471
_refine_ls_shell.R_factor_R_free_error 0.0000
_refine_ls_shell.R_factor_R_work 0.2456
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5V5C
_struct.title 'VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5V5C
_struct_keywords.text
;Amyloid, tau, Alzheimer's Disease, tauopathy, MAPT, STRUCTURAL PROTEIN
;
_struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 5V5C
_struct_ref.pdbx_db_accession 5V5C
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 5V5C
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 5V5C
_struct_ref_seq.db_align_beg 275
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 280
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 275
_struct_ref_seq.pdbx_auth_seq_align_end 280
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details octadecameric
_pdbx_struct_assembly.oligomeric_count 18
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A
1 2 A
1 3 A
1 4 A
1 5 A
1 6 A
1 7 A
1 8 A
1 9 A
1 10 A
1 11 A
1 12 A
1 13 A
1 14 A
1 15 A
1 16 A
1 17 A
1 18 A
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support homology
_pdbx_struct_assembly_auth_evidence.details ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_551 x,y,z-4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -19.2800000000
3 'crystal symmetry operation' 1_552 x,y,z-3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -14.4600000000
4 'crystal symmetry operation' 1_553 x,y,z-2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -9.6400000000
5 'crystal symmetry operation' 1_554 x,y,z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -4.8200000000
6 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4.8200000000
7 'crystal symmetry operation' 1_557 x,y,z+2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 9.6400000000
8 'crystal symmetry operation' 1_558 x,y,z+3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14.4600000000
9 'crystal symmetry operation' 1_559 x,y,z+4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 19.2800000000
10 'crystal symmetry operation' 4_551 x+1/2,-y+1/2,-z-4 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -19.2800000000
11 'crystal symmetry operation' 4_552 x+1/2,-y+1/2,-z-3 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -14.4600000000
12 'crystal symmetry operation' 4_553 x+1/2,-y+1/2,-z-2 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -9.6400000000
13 'crystal symmetry operation' 4_554 x+1/2,-y+1/2,-z-1 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -4.8200000000
14 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
15 'crystal symmetry operation' 4_556 x+1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 4.8200000000
16 'crystal symmetry operation' 4_557 x+1/2,-y+1/2,-z+2 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 9.6400000000
17 'crystal symmetry operation' 4_558 x+1/2,-y+1/2,-z+3 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 14.4600000000
18 'crystal symmetry operation' 4_559 x+1/2,-y+1/2,-z+4 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000
-1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 19.2800000000
#
_phasing.method MR
#
_em_3d_fitting.id 1
_em_3d_fitting.entry_id 5V5C
_em_3d_fitting.ref_space ?
_em_3d_fitting.ref_protocol ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.method ?
_em_3d_fitting.details ?
#
_em_3d_reconstruction.entry_id 5V5C
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm ?
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.num_particles ?
_em_3d_reconstruction.resolution ?
_em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES'
_em_3d_reconstruction.symmetry_type '3D CRYSTAL'
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details ?
_em_buffer.pH 7
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details ?
_em_entity_assembly.name 'VQIINK Tau peptide'
_em_entity_assembly.source NATURAL
_em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT'
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 5V5C
_em_imaging.accelerating_voltage 200
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen ?
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TECNAI 20'
_em_imaging.mode DIFFRACTION
_em_imaging.nominal_cs ?
_em_imaging.nominal_defocus_max ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_magnification ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature ?
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.entry_id 5V5C
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 5V5C
_em_experiment.id 1
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
_em_experiment.entity_assembly_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
GLN N N N N 18
GLN CA C N S 19
GLN C C N N 20
GLN O O N N 21
GLN CB C N N 22
GLN CG C N N 23
GLN CD C N N 24
GLN OE1 O N N 25
GLN NE2 N N N 26
GLN OXT O N N 27
GLN H H N N 28
GLN H2 H N N 29
GLN HA H N N 30
GLN HB2 H N N 31
GLN HB3 H N N 32
GLN HG2 H N N 33
GLN HG3 H N N 34
GLN HE21 H N N 35
GLN HE22 H N N 36
GLN HXT H N N 37
ILE N N N N 38
ILE CA C N S 39
ILE C C N N 40
ILE O O N N 41
ILE CB C N S 42
ILE CG1 C N N 43
ILE CG2 C N N 44
ILE CD1 C N N 45
ILE OXT O N N 46
ILE H H N N 47
ILE H2 H N N 48
ILE HA H N N 49
ILE HB H N N 50
ILE HG12 H N N 51
ILE HG13 H N N 52
ILE HG21 H N N 53
ILE HG22 H N N 54
ILE HG23 H N N 55
ILE HD11 H N N 56
ILE HD12 H N N 57
ILE HD13 H N N 58
ILE HXT H N N 59
LYS N N N N 60
LYS CA C N S 61
LYS C C N N 62
LYS O O N N 63
LYS CB C N N 64
LYS CG C N N 65
LYS CD C N N 66
LYS CE C N N 67
LYS NZ N N N 68
LYS OXT O N N 69
LYS H H N N 70
LYS H2 H N N 71
LYS HA H N N 72
LYS HB2 H N N 73
LYS HB3 H N N 74
LYS HG2 H N N 75
LYS HG3 H N N 76
LYS HD2 H N N 77
LYS HD3 H N N 78
LYS HE2 H N N 79
LYS HE3 H N N 80
LYS HZ1 H N N 81
LYS HZ2 H N N 82
LYS HZ3 H N N 83
LYS HXT H N N 84
VAL N N N N 85
VAL CA C N S 86
VAL C C N N 87
VAL O O N N 88
VAL CB C N N 89
VAL CG1 C N N 90
VAL CG2 C N N 91
VAL OXT O N N 92
VAL H H N N 93
VAL H2 H N N 94
VAL HA H N N 95
VAL HB H N N 96
VAL HG11 H N N 97
VAL HG12 H N N 98
VAL HG13 H N N 99
VAL HG21 H N N 100
VAL HG22 H N N 101
VAL HG23 H N N 102
VAL HXT H N N 103
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
GLN N CA sing N N 17
GLN N H sing N N 18
GLN N H2 sing N N 19
GLN CA C sing N N 20
GLN CA CB sing N N 21
GLN CA HA sing N N 22
GLN C O doub N N 23
GLN C OXT sing N N 24
GLN CB CG sing N N 25
GLN CB HB2 sing N N 26
GLN CB HB3 sing N N 27
GLN CG CD sing N N 28
GLN CG HG2 sing N N 29
GLN CG HG3 sing N N 30
GLN CD OE1 doub N N 31
GLN CD NE2 sing N N 32
GLN NE2 HE21 sing N N 33
GLN NE2 HE22 sing N N 34
GLN OXT HXT sing N N 35
ILE N CA sing N N 36
ILE N H sing N N 37
ILE N H2 sing N N 38
ILE CA C sing N N 39
ILE CA CB sing N N 40
ILE CA HA sing N N 41
ILE C O doub N N 42
ILE C OXT sing N N 43
ILE CB CG1 sing N N 44
ILE CB CG2 sing N N 45
ILE CB HB sing N N 46
ILE CG1 CD1 sing N N 47
ILE CG1 HG12 sing N N 48
ILE CG1 HG13 sing N N 49
ILE CG2 HG21 sing N N 50
ILE CG2 HG22 sing N N 51
ILE CG2 HG23 sing N N 52
ILE CD1 HD11 sing N N 53
ILE CD1 HD12 sing N N 54
ILE CD1 HD13 sing N N 55
ILE OXT HXT sing N N 56
LYS N CA sing N N 57
LYS N H sing N N 58
LYS N H2 sing N N 59
LYS CA C sing N N 60
LYS CA CB sing N N 61
LYS CA HA sing N N 62
LYS C O doub N N 63
LYS C OXT sing N N 64
LYS CB CG sing N N 65
LYS CB HB2 sing N N 66
LYS CB HB3 sing N N 67
LYS CG CD sing N N 68
LYS CG HG2 sing N N 69
LYS CG HG3 sing N N 70
LYS CD CE sing N N 71
LYS CD HD2 sing N N 72
LYS CD HD3 sing N N 73
LYS CE NZ sing N N 74
LYS CE HE2 sing N N 75
LYS CE HE3 sing N N 76
LYS NZ HZ1 sing N N 77
LYS NZ HZ2 sing N N 78
LYS NZ HZ3 sing N N 79
LYS OXT HXT sing N N 80
VAL N CA sing N N 81
VAL N H sing N N 82
VAL N H2 sing N N 83
VAL CA C sing N N 84
VAL CA CB sing N N 85
VAL CA HA sing N N 86
VAL C O doub N N 87
VAL C OXT sing N N 88
VAL CB CG1 sing N N 89
VAL CB CG2 sing N N 90
VAL CB HB sing N N 91
VAL CG1 HG11 sing N N 92
VAL CG1 HG12 sing N N 93
VAL CG1 HG13 sing N N 94
VAL CG2 HG21 sing N N 95
VAL CG2 HG22 sing N N 96
VAL CG2 HG23 sing N N 97
VAL OXT HXT sing N N 98
#
_em_3d_crystal_entity.id 1
_em_3d_crystal_entity.image_processing_id 1
_em_3d_crystal_entity.angle_alpha 90
_em_3d_crystal_entity.angle_beta 90
_em_3d_crystal_entity.angle_gamma 90
_em_3d_crystal_entity.length_a 20.36
_em_3d_crystal_entity.length_b 43.22
_em_3d_crystal_entity.length_c 4.82
_em_3d_crystal_entity.space_group_name 'P 21 21 2'
_em_3d_crystal_entity.space_group_num 18
#
_em_crystal_formation.id 1
_em_crystal_formation.specimen_id 1
_em_crystal_formation.atmosphere ?
_em_crystal_formation.details ?
_em_crystal_formation.instrument ?
_em_crystal_formation.lipid_mixture ?
_em_crystal_formation.lipid_protein_ratio ?
_em_crystal_formation.temperature 291
_em_crystal_formation.time ?
_em_crystal_formation.time_unit ?
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type NONE
_em_ctf_correction.details ?
#
_em_diffraction.id 1
_em_diffraction.camera_length 730
_em_diffraction.imaging_id 1
_em_diffraction.tilt_angle_list ?
#
_em_diffraction_shell.id 1
_em_diffraction_shell.em_diffraction_stats_id 1
_em_diffraction_shell.fourier_space_coverage 71.6
_em_diffraction_shell.high_resolution 1.25
_em_diffraction_shell.low_resolution 1.31
_em_diffraction_shell.multiplicity 2.5
_em_diffraction_shell.num_structure_factors 106
_em_diffraction_shell.phase_residual 0.1
#
_em_diffraction_stats.id 1
_em_diffraction_stats.details 'This is a crystallography experiment. Phases were not measured.'
_em_diffraction_stats.image_processing_id 1
_em_diffraction_stats.fourier_space_coverage 86.8
_em_diffraction_stats.high_resolution 1.25
_em_diffraction_stats.num_intensities_measured 5454
_em_diffraction_stats.num_structure_factors 1226
_em_diffraction_stats.overall_phase_error 0.1
_em_diffraction_stats.overall_phase_residual 0.1
_em_diffraction_stats.phase_error_rejection_criteria 0.1
_em_diffraction_stats.r_merge 23.9
_em_diffraction_stats.r_sym 23.9
#
_em_entity_assembly_naturalsource.id 1
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.ncbi_tax_id 9606
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism 'Homo sapiens'
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 0.1
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)'
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'IMAGE ACQUISITION' ? ? ? ? ? 1
2 MASKING ? ? ? ? ? ?
3 'CTF CORRECTION' ? ? ? 1 ? ?
4 'LAYERLINE INDEXING' ? ? ? ? ? ?
5 'DIFFRACTION INDEXING' ? ? ? ? ? ?
6 'MODEL FITTING' ? Coot 0.8.2 ? 1 ?
7 OTHER ? ? ? ? ? ?
8 'MOLECULAR REPLACEMENT' ? Phaser ? 1 ? ?
9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ?
10 'SYMMETRY DETERMINATION' ? XDS ? 1 ? ?
11 'CRYSTALLOGRAPHY MERGING' ? XSCALE ? 1 ? ?
12 RECONSTRUCTION ? ? ? 1 ? ?
13 'MODEL REFINEMENT' ? BUSTER 2.10.0 ? 1 ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration ?
_em_specimen.details '3D micro-crystal'
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' 'United States'
'1F32 NS095661' 1
'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States'
'1R01 AG029430' 2
'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 'RF1 AG054022'
3
#
_atom_sites.entry_id 5V5C
_atom_sites.fract_transf_matrix[1][1] 0.049116
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023137
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.207469
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . VAL A 1 1 ? 3.292 2.709 0.799 1.00 13.25 ? 275 VAL A N 1
ATOM 2 C CA . VAL A 1 1 ? 4.334 3.587 1.309 1.00 12.17 ? 275 VAL A CA 1
ATOM 3 C C . VAL A 1 1 ? 4.140 5.001 0.779 1.00 9.47 ? 275 VAL A C 1
ATOM 4 O O . VAL A 1 1 ? 3.832 5.172 -0.409 1.00 8.59 ? 275 VAL A O 1
ATOM 5 C CB . VAL A 1 1 ? 5.731 3.028 0.925 1.00 17.45 ? 275 VAL A CB 1
ATOM 6 C CG1 . VAL A 1 1 ? 6.853 4.002 1.292 1.00 17.43 ? 275 VAL A CG1 1
ATOM 7 C CG2 . VAL A 1 1 ? 5.965 1.670 1.572 1.00 17.65 ? 275 VAL A CG2 1
ATOM 8 H H1 . VAL A 1 1 ? 3.446 2.394 -0.154 1.00 12.71 ? 275 VAL A H1 1
ATOM 9 H HA . VAL A 1 1 ? 4.257 3.607 2.395 1.00 12.99 ? 275 VAL A HA 1
ATOM 10 H HB . VAL A 1 1 ? 5.764 2.887 -0.154 1.00 18.07 ? 275 VAL A HB 1
ATOM 11 H HG11 . VAL A 1 1 ? 6.935 4.767 0.520 1.00 16.93 ? 275 VAL A HG11 1
ATOM 12 H HG12 . VAL A 1 1 ? 7.794 3.459 1.366 1.00 17.44 ? 275 VAL A HG12 1
ATOM 13 H HG13 . VAL A 1 1 ? 6.618 4.467 2.248 1.00 18.00 ? 275 VAL A HG13 1
ATOM 14 H HG21 . VAL A 1 1 ? 5.946 1.788 2.654 1.00 17.65 ? 275 VAL A HG21 1
ATOM 15 H HG22 . VAL A 1 1 ? 6.934 1.285 1.258 1.00 17.37 ? 275 VAL A HG22 1
ATOM 16 H HG23 . VAL A 1 1 ? 5.182 0.980 1.261 1.00 17.79 ? 275 VAL A HG23 1
ATOM 17 N N . GLN A 1 2 ? 4.273 6.016 1.663 1.00 4.51 ? 276 GLN A N 1
ATOM 18 C CA . GLN A 1 2 ? 4.163 7.432 1.288 1.00 4.67 ? 276 GLN A CA 1
ATOM 19 C C . GLN A 1 2 ? 5.275 8.222 1.941 1.00 3.96 ? 276 GLN A C 1
ATOM 20 O O . GLN A 1 2 ? 5.284 8.378 3.169 1.00 3.01 ? 276 GLN A O 1
ATOM 21 C CB . GLN A 1 2 ? 2.832 8.050 1.724 1.00 5.87 ? 276 GLN A CB 1
ATOM 22 C CG . GLN A 1 2 ? 1.592 7.478 1.089 1.00 8.57 ? 276 GLN A CG 1
ATOM 23 C CD . GLN A 1 2 ? 0.348 8.234 1.538 1.00 4.41 ? 276 GLN A CD 1
ATOM 24 O OE1 . GLN A 1 2 ? 0.162 8.497 2.733 1.00 12.30 ? 276 GLN A OE1 1
ATOM 25 N NE2 . GLN A 1 2 ? -0.529 8.571 0.630 1.00 5.10 ? 276 GLN A NE2 1
ATOM 26 H H . GLN A 1 2 ? 4.470 5.880 2.650 1.00 6.85 ? 276 GLN A H 1
ATOM 27 H HA . GLN A 1 2 ? 4.233 7.541 0.210 1.00 5.37 ? 276 GLN A HA 1
ATOM 28 H HB2 . GLN A 1 2 ? 2.746 7.930 2.803 1.00 5.27 ? 276 GLN A HB2 1
ATOM 29 H HB3 . GLN A 1 2 ? 2.850 9.109 1.473 1.00 5.44 ? 276 GLN A HB3 1
ATOM 30 H HG2 . GLN A 1 2 ? 1.693 7.531 0.006 1.00 9.80 ? 276 GLN A HG2 1
ATOM 31 H HG3 . GLN A 1 2 ? 1.484 6.441 1.405 1.00 9.55 ? 276 GLN A HG3 1
ATOM 32 H HE21 . GLN A 1 2 ? -1.375 9.064 0.901 1.00 4.12 ? 276 GLN A HE21 1
ATOM 33 H HE22 . GLN A 1 2 ? -0.389 8.319 -0.343 1.00 5.72 ? 276 GLN A HE22 1
ATOM 34 N N . ILE A 1 3 ? 6.195 8.741 1.106 1.00 3.00 ? 277 ILE A N 1
ATOM 35 C CA . ILE A 1 3 ? 7.302 9.618 1.486 1.00 3.00 ? 277 ILE A CA 1
ATOM 36 C C . ILE A 1 3 ? 6.986 10.984 0.873 1.00 6.45 ? 277 ILE A C 1
ATOM 37 O O . ILE A 1 3 ? 6.987 11.115 -0.358 1.00 3.19 ? 277 ILE A O 1
ATOM 38 C CB . ILE A 1 3 ? 8.641 9.040 0.982 1.00 6.55 ? 277 ILE A CB 1
ATOM 39 C CG1 . ILE A 1 3 ? 8.751 7.573 1.409 1.00 8.12 ? 277 ILE A CG1 1
ATOM 40 C CG2 . ILE A 1 3 ? 9.794 9.874 1.535 1.00 8.66 ? 277 ILE A CG2 1
ATOM 41 C CD1 . ILE A 1 3 ? 9.979 6.875 1.034 1.00 18.90 ? 277 ILE A CD1 1
ATOM 42 H H . ILE A 1 3 ? 6.195 8.541 0.111 1.00 5.10 ? 277 ILE A H 1
ATOM 43 H HA . ILE A 1 3 ? 7.360 9.697 2.569 1.00 5.84 ? 277 ILE A HA 1
ATOM 44 H HB . ILE A 1 3 ? 8.659 9.089 -0.106 1.00 5.54 ? 277 ILE A HB 1
ATOM 45 H HG12 . ILE A 1 3 ? 8.646 7.518 2.491 1.00 6.75 ? 277 ILE A HG12 1
ATOM 46 H HG13 . ILE A 1 3 ? 7.946 7.015 0.935 1.00 7.83 ? 277 ILE A HG13 1
ATOM 47 H HG21 . ILE A 1 3 ? 9.635 10.913 1.257 1.00 8.92 ? 277 ILE A HG21 1
ATOM 48 H HG22 . ILE A 1 3 ? 10.733 9.527 1.107 1.00 7.56 ? 277 ILE A HG22 1
ATOM 49 H HG23 . ILE A 1 3 ? 9.823 9.772 2.619 1.00 9.81 ? 277 ILE A HG23 1
ATOM 50 H HD11 . ILE A 1 3 ? 10.154 7.022 -0.031 1.00 18.66 ? 277 ILE A HD11 1
ATOM 51 H HD12 . ILE A 1 3 ? 9.846 5.815 1.242 1.00 19.19 ? 277 ILE A HD12 1
ATOM 52 H HD13 . ILE A 1 3 ? 10.812 7.262 1.618 1.00 18.46 ? 277 ILE A HD13 1
ATOM 53 N N . ILE A 1 4 ? 6.686 11.990 1.717 1.00 4.14 ? 278 ILE A N 1
ATOM 54 C CA . ILE A 1 4 ? 6.279 13.312 1.259 1.00 3.00 ? 278 ILE A CA 1
ATOM 55 C C . ILE A 1 4 ? 7.090 14.458 1.851 1.00 3.00 ? 278 ILE A C 1
ATOM 56 O O . ILE A 1 4 ? 7.069 14.624 3.059 1.00 3.00 ? 278 ILE A O 1
ATOM 57 C CB . ILE A 1 4 ? 4.768 13.537 1.576 1.00 8.10 ? 278 ILE A CB 1
ATOM 58 C CG1 . ILE A 1 4 ? 3.866 12.425 0.941 1.00 10.62 ? 278 ILE A CG1 1
ATOM 59 C CG2 . ILE A 1 4 ? 4.300 14.957 1.169 1.00 9.93 ? 278 ILE A CG2 1
ATOM 60 C CD1 . ILE A 1 4 ? 2.371 12.528 1.286 1.00 22.62 ? 278 ILE A CD1 1
ATOM 61 H H . ILE A 1 4 ? 6.734 11.917 2.728 1.00 5.58 ? 278 ILE A H 1
ATOM 62 H HA . ILE A 1 4 ? 6.371 13.359 0.176 1.00 7.09 ? 278 ILE A HA 1
ATOM 63 H HB . ILE A 1 4 ? 4.669 13.462 2.658 1.00 8.20 ? 278 ILE A HB 1
ATOM 64 H HG12 . ILE A 1 4 ? 3.964 12.469 -0.142 1.00 12.05 ? 278 ILE A HG12 1
ATOM 65 H HG13 . ILE A 1 4 ? 4.184 11.447 1.298 1.00 11.32 ? 278 ILE A HG13 1
ATOM 66 H HG21 . ILE A 1 4 ? 4.375 15.608 2.039 1.00 10.89 ? 278 ILE A HG21 1
ATOM 67 H HG22 . ILE A 1 4 ? 3.274 14.942 0.806 1.00 9.00 ? 278 ILE A HG22 1
ATOM 68 H HG23 . ILE A 1 4 ? 4.940 15.332 0.371 1.00 11.60 ? 278 ILE A HG23 1
ATOM 69 H HD11 . ILE A 1 4 ? 2.272 12.927 2.294 1.00 22.47 ? 278 ILE A HD11 1
ATOM 70 H HD12 . ILE A 1 4 ? 1.936 11.531 1.241 1.00 22.64 ? 278 ILE A HD12 1
ATOM 71 H HD13 . ILE A 1 4 ? 1.873 13.178 0.568 1.00 23.25 ? 278 ILE A HD13 1
ATOM 72 N N . ASN A 1 5 ? 7.624 15.346 0.998 1.00 3.00 ? 279 ASN A N 1
ATOM 73 C CA . ASN A 1 5 ? 8.324 16.563 1.416 1.00 4.12 ? 279 ASN A CA 1
ATOM 74 C C . ASN A 1 5 ? 7.635 17.790 0.784 1.00 11.78 ? 279 ASN A C 1
ATOM 75 O O . ASN A 1 5 ? 7.782 18.009 -0.418 1.00 9.41 ? 279 ASN A O 1
ATOM 76 C CB . ASN A 1 5 ? 9.797 16.495 1.058 1.00 7.78 ? 279 ASN A CB 1
ATOM 77 C CG . ASN A 1 5 ? 10.586 17.697 1.510 1.00 23.37 ? 279 ASN A CG 1
ATOM 78 O OD1 . ASN A 1 5 ? 10.990 17.786 2.675 1.00 11.46 ? 279 ASN A OD1 1
ATOM 79 N ND2 . ASN A 1 5 ? 10.856 18.632 0.603 1.00 18.33 ? 279 ASN A ND2 1
ATOM 80 H H . ASN A 1 5 ? 7.602 15.239 -0.012 1.00 3.28 ? 279 ASN A H 1
ATOM 81 H HA . ASN A 1 5 ? 8.284 16.656 2.499 1.00 5.26 ? 279 ASN A HA 1
ATOM 82 H HB2 . ASN A 1 5 ? 10.207 15.641 1.593 1.00 4.21 ? 279 ASN A HB2 1
ATOM 83 H HB3 . ASN A 1 5 ? 9.909 16.356 -0.016 1.00 8.58 ? 279 ASN A HB3 1
ATOM 84 H HD21 . ASN A 1 5 ? 11.382 19.458 0.868 1.00 18.02 ? 279 ASN A HD21 1
ATOM 85 H HD22 . ASN A 1 5 ? 10.538 18.527 -0.355 1.00 19.06 ? 279 ASN A HD22 1
ATOM 86 N N . LYS A 1 6 ? 6.925 18.790 1.523 1.00 11.28 ? 280 LYS A N 1
ATOM 87 C CA . LYS A 1 6 ? 6.180 19.952 1.020 1.00 17.28 ? 280 LYS A CA 1
ATOM 88 C C . LYS A 1 6 ? 6.727 21.288 1.548 1.00 30.71 ? 280 LYS A C 1
ATOM 89 O O . LYS A 1 6 ? 7.470 21.288 2.554 1.00 36.70 ? 280 LYS A O 1
ATOM 90 C CB . LYS A 1 6 ? 4.663 19.795 1.294 1.00 21.35 ? 280 LYS A CB 1
ATOM 91 C CG . LYS A 1 6 ? 4.262 19.708 2.773 1.00 36.04 ? 280 LYS A CG 1
ATOM 92 C CD . LYS A 1 6 ? 2.748 19.553 3.004 1.00 41.32 ? 280 LYS A CD 1
ATOM 93 C CE . LYS A 1 6 ? 2.173 18.233 2.550 1.00 48.14 ? 280 LYS A CE 1
ATOM 94 N NZ . LYS A 1 6 ? 0.706 18.143 2.799 1.00 49.96 ? 280 LYS A NZ 1
ATOM 95 O OXT . LYS A 1 6 ? 6.487 22.324 0.889 1.00 45.04 ? 280 LYS A OXT 1
ATOM 96 H H . LYS A 1 6 ? 6.910 18.707 2.534 1.00 10.89 ? 280 LYS A H 1
ATOM 97 H HA . LYS A 1 6 ? 6.285 20.004 -0.062 1.00 16.42 ? 280 LYS A HA 1
ATOM 98 H HB2 . LYS A 1 6 ? 4.148 20.649 0.858 1.00 21.36 ? 280 LYS A HB2 1
ATOM 99 H HB3 . LYS A 1 6 ? 4.326 18.879 0.810 1.00 21.68 ? 280 LYS A HB3 1
ATOM 100 H HG2 . LYS A 1 6 ? 4.759 18.851 3.226 1.00 36.27 ? 280 LYS A HG2 1
ATOM 101 H HG3 . LYS A 1 6 ? 4.561 20.628 3.272 1.00 36.13 ? 280 LYS A HG3 1
ATOM 102 H HD2 . LYS A 1 6 ? 2.552 19.638 4.071 1.00 41.41 ? 280 LYS A HD2 1
ATOM 103 H HD3 . LYS A 1 6 ? 2.225 20.346 2.471 1.00 41.31 ? 280 LYS A HD3 1
ATOM 104 H HE2 . LYS A 1 6 ? 2.345 18.114 1.480 1.00 48.48 ? 280 LYS A HE2 1
ATOM 105 H HE3 . LYS A 1 6 ? 2.657 17.427 3.099 1.00 48.21 ? 280 LYS A HE3 1
ATOM 106 H HZ2 . LYS A 1 6 ? 0.284 17.500 2.137 1.00 49.93 ? 280 LYS A HZ2 1
ATOM 107 H HZ3 . LYS A 1 6 ? 0.268 19.053 2.697 1.00 49.81 ? 280 LYS A HZ3 1
#