data_5TGP
#
_entry.id 5TGP
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5TGP pdb_00005tgp 10.2210/pdb5tgp/pdb
WWPDB D_1000224227 ? ?
#
_pdbx_database_related.content_type unspecified
_pdbx_database_related.db_id 5TGR
_pdbx_database_related.db_name PDB
_pdbx_database_related.details .
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5TGP
_pdbx_database_status.recvd_initial_deposition_date 2016-09-28
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Zhang, W.' 1
'Huang, Z.' 2
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country ?
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'To Be Published'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD 0353
_citation.journal_id_ISSN ?
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume ?
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title 'DNA 8mer containing two 2SeT modifications'
_citation.year ?
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI ?
_citation.pdbx_database_id_PubMed ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Zhang, W.' 1 ?
primary 'Huang, Z.' 2 ?
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 120.00
_cell.angle_gamma_esd ?
_cell.entry_id 5TGP
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 44.861
_cell.length_a_esd ?
_cell.length_b 44.861
_cell.length_b_esd ?
_cell.length_c 41.736
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 12
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5TGP
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 169
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 61'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA/RNA (5'-R(*G)-D(P*(2ST))-R(P*G)-D(P*(2ST))-R(P*AP*CP*AP*C)-3')
;
2648.537 2 ? ? ? ?
2 water nat water 18.015 25 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code 'G(US3)G(US3)ACAC'
_entity_poly.pdbx_seq_one_letter_code_can GTGTACAC
_entity_poly.pdbx_strand_id A,C
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 G n
1 2 US3 n
1 3 G n
1 4 US3 n
1 5 A n
1 6 C n
1 7 A n
1 8 C n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 8
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 5TGP
_struct_ref.pdbx_db_accession 5TGP
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 5TGP A 1 ? 8 ? 5TGP 1 ? 8 ? 1 8
2 1 5TGP C 1 ? 8 ? 5TGP 1 ? 8 ? 1 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O8 P' 323.197
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O8 P' 363.221
HOH non-polymer . WATER ? 'H2 O'
18.015
US3 'DNA linking' n '1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5-methyl-2-selanylpyrimidin-4(1H)-one'
"2-Se-Thymidine-5'-phosphate" 'C10 H15 N2 O7 P Se' 385.169
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5TGP
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.29
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 46.26
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 294
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;10% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.040 M Sodium cacodylate trihydrate, 0.012 M Spermine tetrahydrochloride, 0.080 M Sodium chloride, 0.020 M Magnesium chloride hexahydrate
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'MAR CCD 130 mm'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2015-10-01
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.98
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'ALS BEAMLINE 8.2.1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.98
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 8.2.1
_diffrn_source.pdbx_synchrotron_site ALS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 5TGP
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.60
_reflns.d_resolution_low 38.85
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 6189
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 97.1
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 6.5
_reflns.pdbx_Rmerge_I_obs 0.057
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 30.9
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half 0.788
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 1.6
_reflns_shell.d_res_low 1.66
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 2.13
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all 92.7
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.351
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 2.6
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] 0.00
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][2] 0.00
_refine.aniso_B[2][3] 0.00
_refine.aniso_B[3][3] -0.01
_refine.B_iso_max ?
_refine.B_iso_mean 24.167
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.969
_refine.correlation_coeff_Fo_to_Fc_free 0.954
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5TGP
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.60
_refine.ls_d_res_low 38.85
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 5882
_refine.ls_number_reflns_R_free 307
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 97.36
_refine.ls_percent_reflns_R_free 5.0
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.18948
_refine.ls_R_factor_R_free 0.20811
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.18848
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 1dns
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.086
_refine.pdbx_overall_ESU_R_Free 0.083
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 1.930
_refine.overall_SU_ML 0.065
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id 1
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 322
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 25
_refine_hist.number_atoms_total 347
_refine_hist.d_res_high 1.60
_refine_hist.d_res_low 38.85
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.026 0.013 352 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.002 0.020 174 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 3.505 1.576 520 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 2.950 3.000 406 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ?
'X-RAY DIFFRACTION' ? 0.623 0.200 56 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.024 0.020 184 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.003 0.020 76 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ?
'X-RAY DIFFRACTION' ? 2.165 2.527 352 ? r_scbond_it ? ?
'X-RAY DIFFRACTION' ? 2.167 2.527 351 ? r_scbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ?
'X-RAY DIFFRACTION' ? 2.944 3.780 520 ? r_scangle_other ? ?
'X-RAY DIFFRACTION' ? 3.603 25.908 527 ? r_long_range_B_refined ? ?
'X-RAY DIFFRACTION' ? 3.530 25.822 516 ? r_long_range_B_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 1.601
_refine_ls_shell.d_res_low 1.643
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 19
_refine_ls_shell.number_reflns_R_work 381
_refine_ls_shell.percent_reflns_obs 89.89
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.292
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.254
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5TGP
_struct.title 'DNA 8mer containing two 2SeT modifications'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5TGP
_struct_keywords.text 'DNA, selenium, modification'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A G 1 "O3'" ? ? ? 1_555 A US3 2 P ? ? A G 1 A US3 2 1_555 ? ? ? ? ? ? ? 1.547 ? ?
covale2 covale one ? A US3 2 "O3'" ? ? ? 1_555 A G 3 P ? ? A US3 2 A G 3 1_555 ? ? ? ? ? ? ? 1.702 ? ?
covale3 covale both ? A G 3 "O3'" ? ? ? 1_555 A US3 4 P ? ? A G 3 A US3 4 1_555 ? ? ? ? ? ? ? 1.589 ? ?
covale4 covale one ? A US3 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A US3 4 A A 5 1_555 ? ? ? ? ? ? ? 1.681 ? ?
covale5 covale both ? B G 1 "O3'" ? ? ? 1_555 B US3 2 P ? ? C G 1 C US3 2 1_555 ? ? ? ? ? ? ? 1.675 ? ?
covale6 covale one ? B US3 2 "O3'" ? ? ? 1_555 B G 3 P ? ? C US3 2 C G 3 1_555 ? ? ? ? ? ? ? 1.638 ? ?
covale7 covale both ? B G 3 "O3'" ? ? ? 1_555 B US3 4 P ? ? C G 3 C US3 4 1_555 ? ? ? ? ? ? ? 1.446 ? ?
covale8 covale one ? B US3 4 "O3'" ? ? ? 1_555 B A 5 P ? ? C US3 4 C A 5 1_555 ? ? ? ? ? ? ? 1.595 ? ?
hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 C C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A US3 2 N3 ? ? ? 1_555 B A 7 N1 ? ? A US3 2 C A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A US3 2 O4 ? ? ? 1_555 B A 7 N6 ? ? A US3 2 C A 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 3 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 3 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 3 C C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A US3 4 N3 ? ? ? 1_555 B A 5 N1 ? ? A US3 4 C A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A US3 4 O4 ? ? ? 1_555 B A 5 N6 ? ? A US3 4 C A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 B US3 4 N3 ? ? A A 5 C US3 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 B US3 4 O4 ? ? A A 5 C US3 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 6 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 6 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 6 C G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A A 7 N1 ? ? ? 1_555 B US3 2 N3 ? ? A A 7 C US3 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A A 7 N6 ? ? ? 1_555 B US3 2 O4 ? ? A A 7 C US3 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 C G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_atom_sites.entry_id 5TGP
_atom_sites.fract_transf_matrix[1][1] 0.022291
_atom_sites.fract_transf_matrix[1][2] 0.012870
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.025740
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023960
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
SE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . G A 1 1 ? 14.534 -13.712 -1.397 1.00 44.97 ? 1 G A "O5'" 1
ATOM 2 C "C5'" . G A 1 1 ? 15.943 -13.968 -1.444 1.00 34.07 ? 1 G A "C5'" 1
ATOM 3 C "C4'" . G A 1 1 ? 16.360 -14.581 -2.778 1.00 29.30 ? 1 G A "C4'" 1
ATOM 4 O "O4'" . G A 1 1 ? 15.232 -14.710 -3.695 1.00 28.68 ? 1 G A "O4'" 1
ATOM 5 C "C3'" . G A 1 1 ? 17.355 -13.743 -3.548 1.00 24.57 ? 1 G A "C3'" 1
ATOM 6 O "O3'" . G A 1 1 ? 18.677 -13.644 -2.994 1.00 27.75 ? 1 G A "O3'" 1
ATOM 7 C "C2'" . G A 1 1 ? 17.179 -14.313 -4.964 1.00 24.59 ? 1 G A "C2'" 1
ATOM 8 C "C1'" . G A 1 1 ? 15.647 -14.385 -5.023 1.00 24.59 ? 1 G A "C1'" 1
ATOM 9 N N9 . G A 1 1 ? 15.054 -13.110 -5.424 1.00 25.14 ? 1 G A N9 1
ATOM 10 C C8 . G A 1 1 ? 14.296 -12.266 -4.647 1.00 25.52 ? 1 G A C8 1
ATOM 11 N N7 . G A 1 1 ? 13.933 -11.176 -5.271 1.00 22.18 ? 1 G A N7 1
ATOM 12 C C5 . G A 1 1 ? 14.492 -11.305 -6.539 1.00 23.20 ? 1 G A C5 1
ATOM 13 C C6 . G A 1 1 ? 14.500 -10.399 -7.651 1.00 23.02 ? 1 G A C6 1
ATOM 14 O O6 . G A 1 1 ? 13.945 -9.295 -7.761 1.00 23.54 ? 1 G A O6 1
ATOM 15 N N1 . G A 1 1 ? 15.160 -10.947 -8.748 1.00 21.88 ? 1 G A N1 1
ATOM 16 C C2 . G A 1 1 ? 15.785 -12.156 -8.758 1.00 20.78 ? 1 G A C2 1
ATOM 17 N N2 . G A 1 1 ? 16.389 -12.483 -9.908 1.00 22.94 ? 1 G A N2 1
ATOM 18 N N3 . G A 1 1 ? 15.824 -12.992 -7.728 1.00 24.35 ? 1 G A N3 1
ATOM 19 C C4 . G A 1 1 ? 15.194 -12.487 -6.645 1.00 24.98 ? 1 G A C4 1
HETATM 20 P P . US3 A 1 2 ? 19.866 -12.682 -3.229 1.00 28.34 ? 2 US3 A P 1
HETATM 21 N N1 . US3 A 1 2 ? 18.953 -11.040 -8.198 1.00 23.93 ? 2 US3 A N1 1
HETATM 22 C C2 . US3 A 1 2 ? 18.749 -10.010 -9.189 1.00 23.25 ? 2 US3 A C2 1
HETATM 23 SE SE2 . US3 A 1 2 ? 19.342 -10.161 -10.791 1.00 26.33 ? 2 US3 A SE2 1
HETATM 24 N N3 . US3 A 1 2 ? 18.006 -8.968 -8.683 1.00 23.08 ? 2 US3 A N3 1
HETATM 25 C C4 . US3 A 1 2 ? 17.527 -8.740 -7.460 1.00 23.56 ? 2 US3 A C4 1
HETATM 26 O O4 . US3 A 1 2 ? 16.856 -7.723 -7.153 1.00 24.45 ? 2 US3 A O4 1
HETATM 27 C C5 . US3 A 1 2 ? 17.765 -9.736 -6.418 1.00 24.69 ? 2 US3 A C5 1
HETATM 28 C C6 . US3 A 1 2 ? 18.531 -10.768 -6.854 1.00 22.97 ? 2 US3 A C6 1
HETATM 29 C "C1'" . US3 A 1 2 ? 19.932 -12.108 -8.445 1.00 23.24 ? 2 US3 A "C1'" 1
HETATM 30 C "C2'" . US3 A 1 2 ? 21.346 -11.642 -8.349 1.00 22.57 ? 2 US3 A "C2'" 1
HETATM 31 O OP2 . US3 A 1 2 ? 18.876 -11.482 -2.779 1.00 32.68 ? 2 US3 A OP2 1
HETATM 32 C "C3'" . US3 A 1 2 ? 21.759 -12.101 -6.949 1.00 25.01 ? 2 US3 A "C3'" 1
HETATM 33 O "O3'" . US3 A 1 2 ? 23.173 -12.324 -6.964 1.00 27.43 ? 2 US3 A "O3'" 1
HETATM 34 C "C4'" . US3 A 1 2 ? 21.021 -13.383 -6.872 1.00 26.27 ? 2 US3 A "C4'" 1
HETATM 35 O "O4'" . US3 A 1 2 ? 19.702 -13.125 -7.463 1.00 23.72 ? 2 US3 A "O4'" 1
HETATM 36 C "C5'" . US3 A 1 2 ? 20.935 -13.779 -5.442 1.00 25.70 ? 2 US3 A "C5'" 1
HETATM 37 O "O5'" . US3 A 1 2 ? 20.157 -12.770 -4.839 1.00 26.30 ? 2 US3 A "O5'" 1
HETATM 38 C C5A . US3 A 1 2 ? 17.271 -9.566 -4.997 1.00 26.22 ? 2 US3 A C5A 1
HETATM 39 O OP1 . US3 A 1 2 ? 20.931 -13.418 -2.259 1.00 31.59 ? 2 US3 A OP1 1
ATOM 40 P P . G A 1 3 ? 23.956 -10.965 -6.302 1.00 33.35 ? 3 G A P 1
ATOM 41 O OP1 . G A 1 3 ? 25.278 -11.653 -6.270 1.00 30.24 ? 3 G A OP1 1
ATOM 42 O OP2 . G A 1 3 ? 23.396 -10.203 -5.225 1.00 29.02 ? 3 G A OP2 1
ATOM 43 O "O5'" . G A 1 3 ? 24.058 -10.017 -7.581 1.00 27.40 ? 3 G A "O5'" 1
ATOM 44 C "C5'" . G A 1 3 ? 24.793 -10.341 -8.757 1.00 29.45 ? 3 G A "C5'" 1
ATOM 45 C "C4'" . G A 1 3 ? 24.398 -9.405 -9.861 1.00 27.04 ? 3 G A "C4'" 1
ATOM 46 O "O4'" . G A 1 3 ? 22.953 -9.347 -9.949 1.00 24.46 ? 3 G A "O4'" 1
ATOM 47 C "C3'" . G A 1 3 ? 24.770 -7.945 -9.659 1.00 24.39 ? 3 G A "C3'" 1
ATOM 48 O "O3'" . G A 1 3 ? 26.168 -7.773 -9.842 1.00 24.78 ? 3 G A "O3'" 1
ATOM 49 C "C2'" . G A 1 3 ? 23.853 -7.268 -10.671 1.00 23.69 ? 3 G A "C2'" 1
ATOM 50 C "C1'" . G A 1 3 ? 22.558 -8.055 -10.435 1.00 24.91 ? 3 G A "C1'" 1
ATOM 51 N N9 . G A 1 3 ? 21.648 -7.437 -9.471 1.00 20.47 ? 3 G A N9 1
ATOM 52 C C8 . G A 1 3 ? 21.364 -7.840 -8.187 1.00 22.12 ? 3 G A C8 1
ATOM 53 N N7 . G A 1 3 ? 20.457 -7.108 -7.611 1.00 21.87 ? 3 G A N7 1
ATOM 54 C C5 . G A 1 3 ? 20.148 -6.142 -8.559 1.00 22.81 ? 3 G A C5 1
ATOM 55 C C6 . G A 1 3 ? 19.217 -5.063 -8.504 1.00 22.91 ? 3 G A C6 1
ATOM 56 O O6 . G A 1 3 ? 18.477 -4.725 -7.554 1.00 22.97 ? 3 G A O6 1
ATOM 57 N N1 . G A 1 3 ? 19.207 -4.340 -9.691 1.00 21.67 ? 3 G A N1 1
ATOM 58 C C2 . G A 1 3 ? 19.970 -4.627 -10.798 1.00 20.75 ? 3 G A C2 1
ATOM 59 N N2 . G A 1 3 ? 19.818 -3.811 -11.848 1.00 21.16 ? 3 G A N2 1
ATOM 60 N N3 . G A 1 3 ? 20.837 -5.636 -10.861 1.00 19.50 ? 3 G A N3 1
ATOM 61 C C4 . G A 1 3 ? 20.871 -6.339 -9.712 1.00 19.99 ? 3 G A C4 1
HETATM 62 P P . US3 A 1 4 ? 27.046 -6.524 -9.401 1.00 25.40 ? 4 US3 A P 1
HETATM 63 N N1 . US3 A 1 4 ? 23.326 -2.710 -10.670 1.00 20.32 ? 4 US3 A N1 1
HETATM 64 C C2 . US3 A 1 4 ? 22.369 -1.706 -10.381 1.00 18.88 ? 4 US3 A C2 1
HETATM 65 SE SE2 . US3 A 1 4 ? 22.001 -0.567 -11.574 1.00 24.18 ? 4 US3 A SE2 1
HETATM 66 N N3 . US3 A 1 4 ? 21.646 -1.879 -9.237 1.00 19.57 ? 4 US3 A N3 1
HETATM 67 C C4 . US3 A 1 4 ? 21.913 -2.787 -8.288 1.00 19.39 ? 4 US3 A C4 1
HETATM 68 O O4 . US3 A 1 4 ? 21.296 -2.859 -7.221 1.00 20.33 ? 4 US3 A O4 1
HETATM 69 C C5 . US3 A 1 4 ? 23.048 -3.755 -8.504 1.00 18.66 ? 4 US3 A C5 1
HETATM 70 C C6 . US3 A 1 4 ? 23.738 -3.642 -9.679 1.00 18.72 ? 4 US3 A C6 1
HETATM 71 C "C1'" . US3 A 1 4 ? 24.136 -2.679 -11.912 1.00 19.38 ? 4 US3 A "C1'" 1
HETATM 72 C "C2'" . US3 A 1 4 ? 25.291 -1.750 -11.842 1.00 20.22 ? 4 US3 A "C2'" 1
HETATM 73 O OP2 . US3 A 1 4 ? 26.620 -6.280 -7.921 1.00 24.72 ? 4 US3 A OP2 1
HETATM 74 C "C3'" . US3 A 1 4 ? 26.451 -2.632 -11.438 1.00 23.53 ? 4 US3 A "C3'" 1
HETATM 75 O "O3'" . US3 A 1 4 ? 27.770 -2.091 -11.795 1.00 27.50 ? 4 US3 A "O3'" 1
HETATM 76 C "C4'" . US3 A 1 4 ? 26.117 -3.908 -12.191 1.00 23.18 ? 4 US3 A "C4'" 1
HETATM 77 O "O4'" . US3 A 1 4 ? 24.653 -4.013 -12.134 1.00 21.41 ? 4 US3 A "O4'" 1
HETATM 78 C "C5'" . US3 A 1 4 ? 26.838 -5.153 -11.709 1.00 24.35 ? 4 US3 A "C5'" 1
HETATM 79 O "O5'" . US3 A 1 4 ? 26.490 -5.265 -10.357 1.00 23.65 ? 4 US3 A "O5'" 1
HETATM 80 C C5A . US3 A 1 4 ? 23.359 -4.800 -7.437 1.00 20.26 ? 4 US3 A C5A 1
HETATM 81 O OP1 . US3 A 1 4 ? 28.464 -7.077 -9.928 1.00 30.44 ? 4 US3 A OP1 1
ATOM 82 P P . A A 1 5 ? 28.475 -1.227 -10.537 1.00 27.72 ? 5 A A P 1
ATOM 83 O OP1 . A A 1 5 ? 29.768 -1.020 -11.183 1.00 29.82 ? 5 A A OP1 1
ATOM 84 O OP2 . A A 1 5 ? 28.333 -1.784 -9.137 1.00 28.28 ? 5 A A OP2 1
ATOM 85 O "O5'" . A A 1 5 ? 27.713 0.163 -10.417 1.00 25.75 ? 5 A A "O5'" 1
ATOM 86 C "C5'" . A A 1 5 ? 27.651 1.077 -11.507 1.00 24.85 ? 5 A A "C5'" 1
ATOM 87 C "C4'" . A A 1 5 ? 26.624 2.136 -11.234 1.00 24.18 ? 5 A A "C4'" 1
ATOM 88 O "O4'" . A A 1 5 ? 25.307 1.533 -11.137 1.00 23.19 ? 5 A A "O4'" 1
ATOM 89 C "C3'" . A A 1 5 ? 26.756 2.944 -9.957 1.00 24.21 ? 5 A A "C3'" 1
ATOM 90 O "O3'" . A A 1 5 ? 27.718 3.992 -10.075 1.00 25.61 ? 5 A A "O3'" 1
ATOM 91 C "C2'" . A A 1 5 ? 25.344 3.499 -9.800 1.00 21.68 ? 5 A A "C2'" 1
ATOM 92 C "C1'" . A A 1 5 ? 24.519 2.304 -10.240 1.00 20.28 ? 5 A A "C1'" 1
ATOM 93 N N9 . A A 1 5 ? 24.155 1.459 -9.106 1.00 19.29 ? 5 A A N9 1
ATOM 94 C C8 . A A 1 5 ? 24.745 0.300 -8.669 1.00 20.63 ? 5 A A C8 1
ATOM 95 N N7 . A A 1 5 ? 24.209 -0.186 -7.582 1.00 21.02 ? 5 A A N7 1
ATOM 96 C C5 . A A 1 5 ? 23.143 0.665 -7.333 1.00 20.28 ? 5 A A C5 1
ATOM 97 C C6 . A A 1 5 ? 22.171 0.683 -6.328 1.00 18.94 ? 5 A A C6 1
ATOM 98 N N6 . A A 1 5 ? 22.083 -0.254 -5.392 1.00 20.75 ? 5 A A N6 1
ATOM 99 N N1 . A A 1 5 ? 21.289 1.709 -6.320 1.00 18.84 ? 5 A A N1 1
ATOM 100 C C2 . A A 1 5 ? 21.387 2.636 -7.263 1.00 19.78 ? 5 A A C2 1
ATOM 101 N N3 . A A 1 5 ? 22.265 2.732 -8.257 1.00 20.29 ? 5 A A N3 1
ATOM 102 C C4 . A A 1 5 ? 23.144 1.722 -8.216 1.00 19.75 ? 5 A A C4 1
ATOM 103 P P . C A 1 6 ? 28.572 4.473 -8.783 1.00 27.78 ? 6 C A P 1
ATOM 104 O OP1 . C A 1 6 ? 29.597 5.404 -9.284 1.00 32.84 ? 6 C A OP1 1
ATOM 105 O OP2 . C A 1 6 ? 28.943 3.312 -7.974 1.00 27.19 ? 6 C A OP2 1
ATOM 106 O "O5'" . C A 1 6 ? 27.541 5.392 -8.008 1.00 28.80 ? 6 C A "O5'" 1
ATOM 107 C "C5'" . C A 1 6 ? 26.831 6.451 -8.664 1.00 28.21 ? 6 C A "C5'" 1
ATOM 108 C "C4'" . C A 1 6 ? 25.685 6.980 -7.818 1.00 27.84 ? 6 C A "C4'" 1
ATOM 109 O "O4'" . C A 1 6 ? 24.625 5.980 -7.736 1.00 27.77 ? 6 C A "O4'" 1
ATOM 110 C "C3'" . C A 1 6 ? 25.998 7.312 -6.376 1.00 32.66 ? 6 C A "C3'" 1
ATOM 111 O "O3'" . C A 1 6 ? 26.525 8.640 -6.196 1.00 37.57 ? 6 C A "O3'" 1
ATOM 112 C "C2'" . C A 1 6 ? 24.632 7.210 -5.721 1.00 26.52 ? 6 C A "C2'" 1
ATOM 113 C "C1'" . C A 1 6 ? 24.040 6.011 -6.438 1.00 26.98 ? 6 C A "C1'" 1
ATOM 114 N N1 . C A 1 6 ? 24.305 4.740 -5.747 1.00 23.02 ? 6 C A N1 1
ATOM 115 C C2 . C A 1 6 ? 23.430 4.374 -4.738 1.00 22.20 ? 6 C A C2 1
ATOM 116 O O2 . C A 1 6 ? 22.543 5.175 -4.417 1.00 23.26 ? 6 C A O2 1
ATOM 117 N N3 . C A 1 6 ? 23.613 3.200 -4.096 1.00 22.47 ? 6 C A N3 1
ATOM 118 C C4 . C A 1 6 ? 24.610 2.391 -4.456 1.00 21.85 ? 6 C A C4 1
ATOM 119 N N4 . C A 1 6 ? 24.713 1.207 -3.857 1.00 22.58 ? 6 C A N4 1
ATOM 120 C C5 . C A 1 6 ? 25.505 2.730 -5.501 1.00 21.28 ? 6 C A C5 1
ATOM 121 C C6 . C A 1 6 ? 25.303 3.893 -6.132 1.00 23.29 ? 6 C A C6 1
ATOM 122 P P . A A 1 7 ? 27.594 8.922 -5.016 1.00 37.37 ? 7 A A P 1
ATOM 123 O OP1 . A A 1 7 ? 28.181 10.225 -5.275 1.00 40.39 ? 7 A A OP1 1
ATOM 124 O OP2 . A A 1 7 ? 28.364 7.691 -4.712 1.00 36.13 ? 7 A A OP2 1
ATOM 125 O "O5'" . A A 1 7 ? 26.740 8.895 -3.668 1.00 31.92 ? 7 A A "O5'" 1
ATOM 126 C "C5'" . A A 1 7 ? 25.814 9.927 -3.379 1.00 30.49 ? 7 A A "C5'" 1
ATOM 127 C "C4'" . A A 1 7 ? 24.856 9.478 -2.299 1.00 28.47 ? 7 A A "C4'" 1
ATOM 128 O "O4'" . A A 1 7 ? 24.178 8.251 -2.687 1.00 31.33 ? 7 A A "O4'" 1
ATOM 129 C "C3'" . A A 1 7 ? 25.424 9.165 -0.921 1.00 28.57 ? 7 A A "C3'" 1
ATOM 130 O "O3'" . A A 1 7 ? 25.516 10.440 -0.284 1.00 24.70 ? 7 A A "O3'" 1
ATOM 131 C "C2'" . A A 1 7 ? 24.312 8.319 -0.311 1.00 28.06 ? 7 A A "C2'" 1
ATOM 132 C "C1'" . A A 1 7 ? 23.863 7.510 -1.518 1.00 28.55 ? 7 A A "C1'" 1
ATOM 133 N N9 . A A 1 7 ? 24.548 6.223 -1.571 1.00 28.12 ? 7 A A N9 1
ATOM 134 C C8 . A A 1 7 ? 25.557 5.736 -2.360 1.00 28.62 ? 7 A A C8 1
ATOM 135 N N7 . A A 1 7 ? 25.876 4.487 -2.101 1.00 25.93 ? 7 A A N7 1
ATOM 136 C C5 . A A 1 7 ? 25.019 4.135 -1.071 1.00 23.98 ? 7 A A C5 1
ATOM 137 C C6 . A A 1 7 ? 24.826 2.938 -0.365 1.00 23.78 ? 7 A A C6 1
ATOM 138 N N6 . A A 1 7 ? 25.542 1.836 -0.570 1.00 25.05 ? 7 A A N6 1
ATOM 139 N N1 . A A 1 7 ? 23.927 2.942 0.635 1.00 26.33 ? 7 A A N1 1
ATOM 140 C C2 . A A 1 7 ? 23.219 4.056 0.865 1.00 26.98 ? 7 A A C2 1
ATOM 141 N N3 . A A 1 7 ? 23.301 5.236 0.268 1.00 29.17 ? 7 A A N3 1
ATOM 142 C C4 . A A 1 7 ? 24.213 5.202 -0.717 1.00 28.54 ? 7 A A C4 1
ATOM 143 P P . C A 1 8 ? 26.311 10.587 1.067 1.00 32.31 ? 8 C A P 1
ATOM 144 O OP1 . C A 1 8 ? 26.065 11.932 1.568 1.00 30.42 ? 8 C A OP1 1
ATOM 145 O OP2 . C A 1 8 ? 27.583 9.946 0.928 1.00 30.08 ? 8 C A OP2 1
ATOM 146 O "O5'" . C A 1 8 ? 25.403 9.795 2.109 1.00 27.18 ? 8 C A "O5'" 1
ATOM 147 C "C5'" . C A 1 8 ? 25.860 9.574 3.440 1.00 26.06 ? 8 C A "C5'" 1
ATOM 148 C "C4'" . C A 1 8 ? 24.748 8.954 4.204 1.00 24.98 ? 8 C A "C4'" 1
ATOM 149 O "O4'" . C A 1 8 ? 24.412 7.716 3.520 1.00 22.66 ? 8 C A "O4'" 1
ATOM 150 C "C3'" . C A 1 8 ? 25.080 8.578 5.648 1.00 25.41 ? 8 C A "C3'" 1
ATOM 151 O "O3'" . C A 1 8 ? 23.935 8.662 6.545 1.00 26.24 ? 8 C A "O3'" 1
ATOM 152 C "C2'" . C A 1 8 ? 25.623 7.165 5.485 1.00 23.81 ? 8 C A "C2'" 1
ATOM 153 C "C1'" . C A 1 8 ? 24.779 6.626 4.330 1.00 23.60 ? 8 C A "C1'" 1
ATOM 154 N N1 . C A 1 8 ? 25.522 5.660 3.506 1.00 25.30 ? 8 C A N1 1
ATOM 155 C C2 . C A 1 8 ? 25.674 4.369 4.022 1.00 24.76 ? 8 C A C2 1
ATOM 156 O O2 . C A 1 8 ? 25.151 4.101 5.113 1.00 26.72 ? 8 C A O2 1
ATOM 157 N N3 . C A 1 8 ? 26.376 3.450 3.313 1.00 23.68 ? 8 C A N3 1
ATOM 158 C C4 . C A 1 8 ? 26.955 3.797 2.164 1.00 23.19 ? 8 C A C4 1
ATOM 159 N N4 . C A 1 8 ? 27.665 2.864 1.518 1.00 24.71 ? 8 C A N4 1
ATOM 160 C C5 . C A 1 8 ? 26.880 5.127 1.651 1.00 23.28 ? 8 C A C5 1
ATOM 161 C C6 . C A 1 8 ? 26.144 6.015 2.339 1.00 23.79 ? 8 C A C6 1
ATOM 162 O "O5'" . G B 1 1 ? 26.684 -6.735 4.735 1.00 34.92 ? 1 G C "O5'" 1
ATOM 163 C "C5'" . G B 1 1 ? 26.609 -6.959 6.177 1.00 33.49 ? 1 G C "C5'" 1
ATOM 164 C "C4'" . G B 1 1 ? 26.041 -5.764 6.946 1.00 29.43 ? 1 G C "C4'" 1
ATOM 165 O "O4'" . G B 1 1 ? 27.083 -4.784 7.137 1.00 31.78 ? 1 G C "O4'" 1
ATOM 166 C "C3'" . G B 1 1 ? 24.872 -4.976 6.367 1.00 27.48 ? 1 G C "C3'" 1
ATOM 167 O "O3'" . G B 1 1 ? 23.617 -5.578 6.670 1.00 26.34 ? 1 G C "O3'" 1
ATOM 168 C "C2'" . G B 1 1 ? 25.023 -3.600 7.008 1.00 27.52 ? 1 G C "C2'" 1
ATOM 169 C "C1'" . G B 1 1 ? 26.538 -3.475 7.056 1.00 30.53 ? 1 G C "C1'" 1
ATOM 170 N N9 . G B 1 1 ? 27.025 -2.837 5.835 1.00 30.59 ? 1 G C N9 1
ATOM 171 C C8 . G B 1 1 ? 27.818 -3.354 4.830 1.00 33.35 ? 1 G C C8 1
ATOM 172 N N7 . G B 1 1 ? 28.056 -2.496 3.875 1.00 29.11 ? 1 G C N7 1
ATOM 173 C C5 . G B 1 1 ? 27.383 -1.344 4.273 1.00 29.69 ? 1 G C C5 1
ATOM 174 C C6 . G B 1 1 ? 27.301 -0.081 3.663 1.00 28.48 ? 1 G C C6 1
ATOM 175 O O6 . G B 1 1 ? 27.795 0.288 2.586 1.00 29.01 ? 1 G C O6 1
ATOM 176 N N1 . G B 1 1 ? 26.524 0.802 4.414 1.00 28.00 ? 1 G C N1 1
ATOM 177 C C2 . G B 1 1 ? 25.896 0.496 5.597 1.00 27.45 ? 1 G C C2 1
ATOM 178 N N2 . G B 1 1 ? 25.197 1.484 6.186 1.00 29.25 ? 1 G C N2 1
ATOM 179 N N3 . G B 1 1 ? 25.981 -0.681 6.185 1.00 29.11 ? 1 G C N3 1
ATOM 180 C C4 . G B 1 1 ? 26.749 -1.539 5.483 1.00 29.80 ? 1 G C C4 1
HETATM 181 P P . US3 B 1 2 ? 22.221 -5.356 5.772 1.00 30.00 ? 2 US3 C P 1
HETATM 182 N N1 . US3 B 1 2 ? 22.823 -0.120 4.381 1.00 27.63 ? 2 US3 C N1 1
HETATM 183 C C2 . US3 B 1 2 ? 22.833 0.971 3.469 1.00 29.27 ? 2 US3 C C2 1
HETATM 184 SE SE2 . US3 B 1 2 ? 22.176 2.518 3.881 1.00 32.52 ? 2 US3 C SE2 1
HETATM 185 N N3 . US3 B 1 2 ? 23.581 0.770 2.336 1.00 30.07 ? 2 US3 C N3 1
HETATM 186 C C4 . US3 B 1 2 ? 24.158 -0.381 1.963 1.00 27.08 ? 2 US3 C C4 1
HETATM 187 O O4 . US3 B 1 2 ? 24.855 -0.455 0.934 1.00 30.18 ? 2 US3 C O4 1
HETATM 188 C C5 . US3 B 1 2 ? 24.045 -1.549 2.831 1.00 22.99 ? 2 US3 C C5 1
HETATM 189 C C6 . US3 B 1 2 ? 23.288 -1.395 3.990 1.00 25.96 ? 2 US3 C C6 1
HETATM 190 C "C1'" . US3 B 1 2 ? 22.005 -0.045 5.582 1.00 27.64 ? 2 US3 C "C1'" 1
HETATM 191 C "C2'" . US3 B 1 2 ? 20.532 -0.027 5.281 1.00 26.55 ? 2 US3 C "C2'" 1
HETATM 192 O OP2 . US3 B 1 2 ? 22.882 -5.590 4.336 1.00 28.52 ? 2 US3 C OP2 1
HETATM 193 C "C3'" . US3 B 1 2 ? 20.332 -1.444 5.761 1.00 25.43 ? 2 US3 C "C3'" 1
HETATM 194 O "O3'" . US3 B 1 2 ? 19.018 -1.644 6.065 1.00 26.13 ? 2 US3 C "O3'" 1
HETATM 195 C "C4'" . US3 B 1 2 ? 21.189 -1.789 6.949 1.00 28.44 ? 2 US3 C "C4'" 1
HETATM 196 O "O4'" . US3 B 1 2 ? 22.412 -1.160 6.496 1.00 27.90 ? 2 US3 C "O4'" 1
HETATM 197 C "C5'" . US3 B 1 2 ? 21.243 -3.272 7.275 1.00 29.40 ? 2 US3 C "C5'" 1
HETATM 198 O "O5'" . US3 B 1 2 ? 22.039 -3.760 6.225 1.00 30.30 ? 2 US3 C "O5'" 1
HETATM 199 C C5A . US3 B 1 2 ? 24.670 -2.860 2.448 1.00 25.83 ? 2 US3 C C5A 1
HETATM 200 O OP1 . US3 B 1 2 ? 21.044 -6.143 6.453 1.00 31.39 ? 2 US3 C OP1 1
ATOM 201 P P . G B 1 3 ? 17.676 -1.889 5.159 1.00 34.94 ? 3 G C P 1
ATOM 202 O OP1 . G B 1 3 ? 16.428 -2.203 5.894 1.00 36.54 ? 3 G C OP1 1
ATOM 203 O OP2 . G B 1 3 ? 18.175 -2.816 4.071 1.00 34.53 ? 3 G C OP2 1
ATOM 204 O "O5'" . G B 1 3 ? 17.727 -0.413 4.574 1.00 36.33 ? 3 G C "O5'" 1
ATOM 205 C "C5'" . G B 1 3 ? 16.735 0.015 3.662 1.00 38.32 ? 3 G C "C5'" 1
ATOM 206 C "C4'" . G B 1 3 ? 16.977 1.441 3.272 1.00 32.59 ? 3 G C "C4'" 1
ATOM 207 O "O4'" . G B 1 3 ? 18.400 1.712 3.242 1.00 32.32 ? 3 G C "O4'" 1
ATOM 208 C "C3'" . G B 1 3 ? 16.506 1.674 1.867 1.00 28.73 ? 3 G C "C3'" 1
ATOM 209 O "O3'" . G B 1 3 ? 15.085 1.794 1.692 1.00 25.57 ? 3 G C "O3'" 1
ATOM 210 C "C2'" . G B 1 3 ? 17.407 2.800 1.380 1.00 25.00 ? 3 G C "C2'" 1
ATOM 211 C "C1'" . G B 1 3 ? 18.708 2.465 2.073 1.00 29.99 ? 3 G C "C1'" 1
ATOM 212 N N9 . G B 1 3 ? 19.614 1.686 1.243 1.00 26.21 ? 3 G C N9 1
ATOM 213 C C8 . G B 1 3 ? 20.055 0.398 1.436 1.00 24.59 ? 3 G C C8 1
ATOM 214 N N7 . G B 1 3 ? 20.935 0.023 0.551 1.00 26.80 ? 3 G C N7 1
ATOM 215 C C5 . G B 1 3 ? 21.096 1.137 -0.267 1.00 23.71 ? 3 G C C5 1
ATOM 216 C C6 . G B 1 3 ? 21.876 1.306 -1.433 1.00 22.12 ? 3 G C C6 1
ATOM 217 O O6 . G B 1 3 ? 22.682 0.513 -1.925 1.00 23.42 ? 3 G C O6 1
ATOM 218 N N1 . G B 1 3 ? 21.738 2.590 -1.961 1.00 21.50 ? 3 G C N1 1
ATOM 219 C C2 . G B 1 3 ? 20.890 3.562 -1.470 1.00 22.55 ? 3 G C C2 1
ATOM 220 N N2 . G B 1 3 ? 20.885 4.753 -2.105 1.00 23.11 ? 3 G C N2 1
ATOM 221 N N3 . G B 1 3 ? 20.157 3.409 -0.378 1.00 23.47 ? 3 G C N3 1
ATOM 222 C C4 . G B 1 3 ? 20.289 2.171 0.149 1.00 25.35 ? 3 G C C4 1
HETATM 223 P P . US3 B 1 4 ? 14.198 1.414 0.615 1.00 34.71 ? 4 US3 C P 1
HETATM 224 N N1 . US3 B 1 4 ? 17.550 3.286 -3.249 1.00 27.05 ? 4 US3 C N1 1
HETATM 225 C C2 . US3 B 1 4 ? 18.425 3.235 -4.361 1.00 25.21 ? 4 US3 C C2 1
HETATM 226 SE SE2 . US3 B 1 4 ? 18.694 4.551 -5.405 1.00 28.20 ? 4 US3 C SE2 1
HETATM 227 N N3 . US3 B 1 4 ? 19.205 2.136 -4.335 1.00 22.04 ? 4 US3 C N3 1
HETATM 228 C C4 . US3 B 1 4 ? 19.054 1.027 -3.552 1.00 22.35 ? 4 US3 C C4 1
HETATM 229 O O4 . US3 B 1 4 ? 19.779 0.013 -3.577 1.00 23.54 ? 4 US3 C O4 1
HETATM 230 C C5 . US3 B 1 4 ? 18.047 1.029 -2.479 1.00 24.87 ? 4 US3 C C5 1
HETATM 231 C C6 . US3 B 1 4 ? 17.250 2.128 -2.464 1.00 24.97 ? 4 US3 C C6 1
HETATM 232 C "C1'" . US3 B 1 4 ? 16.587 4.410 -3.165 1.00 24.80 ? 4 US3 C "C1'" 1
HETATM 233 C "C2'" . US3 B 1 4 ? 15.410 4.389 -4.073 1.00 25.45 ? 4 US3 C "C2'" 1
HETATM 234 O OP2 . US3 B 1 4 ? 14.549 -0.068 0.071 1.00 34.33 ? 4 US3 C OP2 1
HETATM 235 C "C3'" . US3 B 1 4 ? 14.403 3.755 -3.142 1.00 24.71 ? 4 US3 C "C3'" 1
HETATM 236 O "O3'" . US3 B 1 4 ? 13.049 3.876 -3.521 1.00 22.07 ? 4 US3 C "O3'" 1
HETATM 237 C "C4'" . US3 B 1 4 ? 14.715 4.455 -1.869 1.00 27.85 ? 4 US3 C "C4'" 1
HETATM 238 O "O4'" . US3 B 1 4 ? 16.146 4.393 -1.789 1.00 28.95 ? 4 US3 C "O4'" 1
HETATM 239 C "C5'" . US3 B 1 4 ? 14.105 3.788 -0.663 1.00 29.66 ? 4 US3 C "C5'" 1
HETATM 240 O "O5'" . US3 B 1 4 ? 14.689 2.503 -0.569 1.00 29.09 ? 4 US3 C "O5'" 1
HETATM 241 C C5A . US3 B 1 4 ? 17.879 -0.144 -1.591 1.00 23.97 ? 4 US3 C C5A 1
HETATM 242 O OP1 . US3 B 1 4 ? 13.077 1.876 1.697 1.00 38.77 ? 4 US3 C OP1 1
ATOM 243 P P . A B 1 5 ? 12.323 2.953 -4.601 1.00 28.14 ? 5 A C P 1
ATOM 244 O OP1 . A B 1 5 ? 10.986 3.569 -4.613 1.00 30.74 ? 5 A C OP1 1
ATOM 245 O OP2 . A B 1 5 ? 12.499 1.574 -4.222 1.00 29.28 ? 5 A C OP2 1
ATOM 246 O "O5'" . A B 1 5 ? 13.050 3.225 -5.985 1.00 28.03 ? 5 A C "O5'" 1
ATOM 247 C "C5'" . A B 1 5 ? 13.002 4.480 -6.662 1.00 24.00 ? 5 A C "C5'" 1
ATOM 248 C "C4'" . A B 1 5 ? 13.920 4.491 -7.857 1.00 24.06 ? 5 A C "C4'" 1
ATOM 249 O "O4'" . A B 1 5 ? 15.299 4.379 -7.420 1.00 23.59 ? 5 A C "O4'" 1
ATOM 250 C "C3'" . A B 1 5 ? 13.786 3.329 -8.828 1.00 25.90 ? 5 A C "C3'" 1
ATOM 251 O "O3'" . A B 1 5 ? 12.688 3.547 -9.680 1.00 25.20 ? 5 A C "O3'" 1
ATOM 252 C "C2'" . A B 1 5 ? 15.115 3.390 -9.558 1.00 26.00 ? 5 A C "C2'" 1
ATOM 253 C "C1'" . A B 1 5 ? 16.042 3.635 -8.381 1.00 23.45 ? 5 A C "C1'" 1
ATOM 254 N N9 . A B 1 5 ? 16.519 2.420 -7.736 1.00 21.33 ? 5 A C N9 1
ATOM 255 C C8 . A B 1 5 ? 16.033 1.770 -6.630 1.00 21.07 ? 5 A C C8 1
ATOM 256 N N7 . A B 1 5 ? 16.743 0.721 -6.280 1.00 21.40 ? 5 A C N7 1
ATOM 257 C C5 . A B 1 5 ? 17.758 0.680 -7.222 1.00 19.45 ? 5 A C C5 1
ATOM 258 C C6 . A B 1 5 ? 18.800 -0.232 -7.448 1.00 19.89 ? 5 A C C6 1
ATOM 259 N N6 . A B 1 5 ? 19.020 -1.304 -6.672 1.00 19.77 ? 5 A C N6 1
ATOM 260 N N1 . A B 1 5 ? 19.596 -0.027 -8.528 1.00 19.36 ? 5 A C N1 1
ATOM 261 C C2 . A B 1 5 ? 19.352 1.028 -9.313 1.00 21.81 ? 5 A C C2 1
ATOM 262 N N3 . A B 1 5 ? 18.442 1.985 -9.168 1.00 20.56 ? 5 A C N3 1
ATOM 263 C C4 . A B 1 5 ? 17.633 1.717 -8.125 1.00 20.01 ? 5 A C C4 1
ATOM 264 P P . C B 1 6 ? 11.919 2.298 -10.343 1.00 27.42 ? 6 C C P 1
ATOM 265 O OP1 . C B 1 6 ? 10.806 2.850 -11.163 1.00 29.26 ? 6 C C OP1 1
ATOM 266 O OP2 . C B 1 6 ? 11.685 1.310 -9.306 1.00 25.12 ? 6 C C OP2 1
ATOM 267 O "O5'" . C B 1 6 ? 12.932 1.747 -11.426 1.00 25.06 ? 6 C C "O5'" 1
ATOM 268 C "C5'" . C B 1 6 ? 13.462 2.462 -12.544 1.00 27.57 ? 6 C C "C5'" 1
ATOM 269 C "C4'" . C B 1 6 ? 14.600 1.684 -13.145 1.00 25.01 ? 6 C C "C4'" 1
ATOM 270 O "O4'" . C B 1 6 ? 15.687 1.556 -12.186 1.00 24.20 ? 6 C C "O4'" 1
ATOM 271 C "C3'" . C B 1 6 ? 14.315 0.236 -13.524 1.00 26.30 ? 6 C C "C3'" 1
ATOM 272 O "O3'" . C B 1 6 ? 13.606 0.239 -14.735 1.00 26.31 ? 6 C C "O3'" 1
ATOM 273 C "C2'" . C B 1 6 ? 15.713 -0.335 -13.630 1.00 22.43 ? 6 C C "C2'" 1
ATOM 274 C "C1'" . C B 1 6 ? 16.373 0.320 -12.424 1.00 23.33 ? 6 C C "C1'" 1
ATOM 275 N N1 . C B 1 6 ? 16.293 -0.505 -11.211 1.00 22.60 ? 6 C C N1 1
ATOM 276 C C2 . C B 1 6 ? 17.252 -1.506 -11.044 1.00 20.75 ? 6 C C C2 1
ATOM 277 O O2 . C B 1 6 ? 18.080 -1.670 -11.923 1.00 23.54 ? 6 C C O2 1
ATOM 278 N N3 . C B 1 6 ? 17.248 -2.246 -9.920 1.00 19.66 ? 6 C C N3 1
ATOM 279 C C4 . C B 1 6 ? 16.305 -2.050 -8.998 1.00 19.77 ? 6 C C C4 1
ATOM 280 N N4 . C B 1 6 ? 16.330 -2.811 -7.905 1.00 21.76 ? 6 C C N4 1
ATOM 281 C C5 . C B 1 6 ? 15.290 -1.059 -9.158 1.00 21.74 ? 6 C C C5 1
ATOM 282 C C6 . C B 1 6 ? 15.310 -0.331 -10.276 1.00 21.31 ? 6 C C C6 1
ATOM 283 P P . A B 1 7 ? 12.473 -0.833 -14.990 1.00 29.94 ? 7 A C P 1
ATOM 284 O OP1 . A B 1 7 ? 11.845 -0.467 -16.246 1.00 32.12 ? 7 A C OP1 1
ATOM 285 O OP2 . A B 1 7 ? 11.808 -1.291 -13.791 1.00 30.03 ? 7 A C OP2 1
ATOM 286 O "O5'" . A B 1 7 ? 13.318 -2.135 -15.389 1.00 25.77 ? 7 A C "O5'" 1
ATOM 287 C "C5'" . A B 1 7 ? 14.079 -2.187 -16.571 1.00 22.40 ? 7 A C "C5'" 1
ATOM 288 C "C4'" . A B 1 7 ? 15.098 -3.299 -16.473 1.00 22.44 ? 7 A C "C4'" 1
ATOM 289 O "O4'" . A B 1 7 ? 15.978 -3.078 -15.344 1.00 23.01 ? 7 A C "O4'" 1
ATOM 290 C "C3'" . A B 1 7 ? 14.566 -4.713 -16.270 1.00 21.59 ? 7 A C "C3'" 1
ATOM 291 O "O3'" . A B 1 7 ? 14.030 -5.260 -17.458 1.00 22.58 ? 7 A C "O3'" 1
ATOM 292 C "C2'" . A B 1 7 ? 15.773 -5.422 -15.659 1.00 19.78 ? 7 A C "C2'" 1
ATOM 293 C "C1'" . A B 1 7 ? 16.396 -4.320 -14.818 1.00 20.25 ? 7 A C "C1'" 1
ATOM 294 N N9 . A B 1 7 ? 15.973 -4.430 -13.432 1.00 20.90 ? 7 A C N9 1
ATOM 295 C C8 . A B 1 7 ? 15.000 -3.784 -12.721 1.00 19.56 ? 7 A C C8 1
ATOM 296 N N7 . A B 1 7 ? 14.887 -4.200 -11.484 1.00 22.04 ? 7 A C N7 1
ATOM 297 C C5 . A B 1 7 ? 15.866 -5.174 -11.371 1.00 21.23 ? 7 A C C5 1
ATOM 298 C C6 . A B 1 7 ? 16.271 -6.003 -10.297 1.00 21.31 ? 7 A C C6 1
ATOM 299 N N6 . A B 1 7 ? 15.729 -5.952 -9.080 1.00 22.18 ? 7 A C N6 1
ATOM 300 N N1 . A B 1 7 ? 17.251 -6.900 -10.536 1.00 20.08 ? 7 A C N1 1
ATOM 301 C C2 . A B 1 7 ? 17.799 -6.943 -11.760 1.00 19.91 ? 7 A C C2 1
ATOM 302 N N3 . A B 1 7 ? 17.521 -6.205 -12.832 1.00 20.59 ? 7 A C N3 1
ATOM 303 C C4 . A B 1 7 ? 16.536 -5.332 -12.565 1.00 20.23 ? 7 A C C4 1
ATOM 304 P P . C B 1 8 ? 12.977 -6.444 -17.396 1.00 25.52 ? 8 C C P 1
ATOM 305 O OP1 . C B 1 8 ? 12.564 -6.723 -18.778 1.00 27.46 ? 8 C C OP1 1
ATOM 306 O OP2 . C B 1 8 ? 11.961 -6.132 -16.323 1.00 26.50 ? 8 C C OP2 1
ATOM 307 O "O5'" . C B 1 8 ? 13.813 -7.692 -16.894 1.00 22.16 ? 8 C C "O5'" 1
ATOM 308 C "C5'" . C B 1 8 ? 14.802 -8.344 -17.711 1.00 22.85 ? 8 C C "C5'" 1
ATOM 309 C "C4'" . C B 1 8 ? 15.326 -9.522 -16.977 1.00 22.89 ? 8 C C "C4'" 1
ATOM 310 O "O4'" . C B 1 8 ? 15.979 -9.061 -15.763 1.00 22.36 ? 8 C C "O4'" 1
ATOM 311 C "C3'" . C B 1 8 ? 14.297 -10.535 -16.493 1.00 23.51 ? 8 C C "C3'" 1
ATOM 312 O "O3'" . C B 1 8 ? 13.978 -11.528 -17.501 1.00 24.14 ? 8 C C "O3'" 1
ATOM 313 C "C2'" . C B 1 8 ? 14.987 -11.185 -15.303 1.00 21.47 ? 8 C C "C2'" 1
ATOM 314 C "C1'" . C B 1 8 ? 15.851 -10.048 -14.762 1.00 23.87 ? 8 C C "C1'" 1
ATOM 315 N N1 . C B 1 8 ? 15.228 -9.429 -13.583 1.00 23.50 ? 8 C C N1 1
ATOM 316 C C2 . C B 1 8 ? 15.405 -10.024 -12.340 1.00 23.63 ? 8 C C C2 1
ATOM 317 O O2 . C B 1 8 ? 16.091 -11.056 -12.257 1.00 23.82 ? 8 C C O2 1
ATOM 318 N N3 . C B 1 8 ? 14.805 -9.479 -11.258 1.00 25.25 ? 8 C C N3 1
ATOM 319 C C4 . C B 1 8 ? 14.071 -8.375 -11.390 1.00 24.92 ? 8 C C C4 1
ATOM 320 N N4 . C B 1 8 ? 13.485 -7.885 -10.293 1.00 23.13 ? 8 C C N4 1
ATOM 321 C C5 . C B 1 8 ? 13.822 -7.787 -12.660 1.00 22.88 ? 8 C C C5 1
ATOM 322 C C6 . C B 1 8 ? 14.431 -8.324 -13.715 1.00 23.34 ? 8 C C C6 1
HETATM 323 O O . HOH C 2 . ? 12.604 -12.890 -1.643 1.00 38.58 ? 101 HOH A O 1
HETATM 324 O O . HOH C 2 . ? 26.234 -7.201 -5.507 1.00 40.64 ? 102 HOH A O 1
HETATM 325 O O . HOH C 2 . ? 17.305 -5.713 -5.358 1.00 18.53 ? 103 HOH A O 1
HETATM 326 O O . HOH C 2 . ? 22.793 6.465 7.606 1.00 25.56 ? 104 HOH A O 1
HETATM 327 O O . HOH C 2 . ? 25.400 -2.006 -5.970 1.00 25.56 ? 105 HOH A O 1
HETATM 328 O O . HOH C 2 . ? 27.243 -3.547 -7.388 1.00 27.86 ? 106 HOH A O 1
HETATM 329 O O . HOH C 2 . ? 20.924 -4.282 -4.914 1.00 27.52 ? 107 HOH A O 1
HETATM 330 O O . HOH C 2 . ? 17.664 -14.726 -10.959 1.00 34.81 ? 108 HOH A O 1
HETATM 331 O O . HOH C 2 . ? 28.473 13.073 2.732 1.00 29.99 ? 109 HOH A O 1
HETATM 332 O O . HOH C 2 . ? 29.434 3.727 -0.654 1.00 33.00 ? 110 HOH A O 1
HETATM 333 O O . HOH C 2 . ? 21.801 4.786 -10.427 1.00 31.05 ? 111 HOH A O 1
HETATM 334 O O . HOH C 2 . ? 23.548 -2.826 -4.062 1.00 31.95 ? 112 HOH A O 1
HETATM 335 O O . HOH C 2 . ? 22.622 10.622 -4.584 1.00 34.10 ? 113 HOH A O 1
HETATM 336 O O . HOH D 2 . ? 17.334 -13.093 -13.229 1.00 31.38 ? 101 HOH C O 1
HETATM 337 O O . HOH D 2 . ? 19.959 -2.566 -2.879 1.00 31.45 ? 102 HOH C O 1
HETATM 338 O O . HOH D 2 . ? 12.980 -3.482 -9.735 1.00 31.13 ? 103 HOH C O 1
HETATM 339 O O . HOH D 2 . ? 15.666 -1.080 -4.520 1.00 27.75 ? 104 HOH C O 1
HETATM 340 O O . HOH D 2 . ? 23.916 -1.883 -1.435 1.00 26.20 ? 105 HOH C O 1
HETATM 341 O O . HOH D 2 . ? 12.609 -10.374 -19.578 1.00 32.29 ? 106 HOH C O 1
HETATM 342 O O . HOH D 2 . ? 14.259 -0.366 -2.649 1.00 31.85 ? 107 HOH C O 1
HETATM 343 O O . HOH D 2 . ? 13.364 -14.285 -17.408 1.00 23.36 ? 108 HOH C O 1
HETATM 344 O O . HOH D 2 . ? 11.451 -5.931 -10.723 1.00 34.14 ? 109 HOH C O 1
HETATM 345 O O . HOH D 2 . ? 12.702 0.046 -6.696 1.00 32.30 ? 110 HOH C O 1
HETATM 346 O O . HOH D 2 . ? 11.419 -1.393 -10.596 1.00 36.82 ? 111 HOH C O 1
HETATM 347 O O . HOH D 2 . ? 17.522 -3.225 -4.352 1.00 31.90 ? 112 HOH C O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 G 1 1 1 G G A . n
A 1 2 US3 2 2 2 US3 2ST A . n
A 1 3 G 3 3 3 G G A . n
A 1 4 US3 4 4 4 US3 2ST A . n
A 1 5 A 5 5 5 A A A . n
A 1 6 C 6 6 6 C C A . n
A 1 7 A 7 7 7 A A A . n
A 1 8 C 8 8 8 C C A . n
B 1 1 G 1 1 1 G G C . n
B 1 2 US3 2 2 2 US3 2ST C . n
B 1 3 G 3 3 3 G G C . n
B 1 4 US3 4 4 4 US3 2ST C . n
B 1 5 A 5 5 5 A A C . n
B 1 6 C 6 6 6 C C C . n
B 1 7 A 7 7 7 A A C . n
B 1 8 C 8 8 8 C C C . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HOH 1 101 23 HOH HOH A .
C 2 HOH 2 102 18 HOH HOH A .
C 2 HOH 3 103 4 HOH HOH A .
C 2 HOH 4 104 22 HOH HOH A .
C 2 HOH 5 105 1 HOH HOH A .
C 2 HOH 6 106 8 HOH HOH A .
C 2 HOH 7 107 3 HOH HOH A .
C 2 HOH 8 108 6 HOH HOH A .
C 2 HOH 9 109 20 HOH HOH A .
C 2 HOH 10 110 9 HOH HOH A .
C 2 HOH 11 111 12 HOH HOH A .
C 2 HOH 12 112 2 HOH HOH A .
C 2 HOH 13 113 21 HOH HOH A .
D 2 HOH 1 101 7 HOH HOH C .
D 2 HOH 2 102 14 HOH HOH C .
D 2 HOH 3 103 17 HOH HOH C .
D 2 HOH 4 104 5 HOH HOH C .
D 2 HOH 5 105 13 HOH HOH C .
D 2 HOH 6 106 10 HOH HOH C .
D 2 HOH 7 107 25 HOH HOH C .
D 2 HOH 8 108 11 HOH HOH C .
D 2 HOH 9 109 16 HOH HOH C .
D 2 HOH 10 110 24 HOH HOH C .
D 2 HOH 11 111 26 HOH HOH C .
D 2 HOH 12 112 15 HOH HOH C .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 780 ?
1 MORE -0 ?
1 'SSA (A^2)' 3080 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2017-10-18
2 'Structure model' 1 1 2023-10-04
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
4 2 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0069 1
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? 1.0 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? 1.0 3
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 1.0 4
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 "O5'"
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 G
_pdbx_validate_close_contact.auth_seq_id_1 1
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 HOH
_pdbx_validate_close_contact.auth_seq_id_2 101
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.11
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" A US3 2 ? ? P A G 3 ? ? 1.702 1.607 0.095 0.012 Y
2 1 "O3'" A US3 4 ? ? P A A 5 ? ? 1.681 1.607 0.074 0.012 Y
3 1 "O3'" C G 3 ? ? P C US3 4 ? ? 1.446 1.607 -0.161 0.012 Y
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C3'" A G 1 ? ? "O3'" A G 1 ? ? P A US3 2 ? ? 133.73 119.70 14.03 1.20 Y
2 1 "O3'" A G 1 ? ? P A US3 2 ? ? OP2 A US3 2 ? ? 87.06 105.20 -18.14 2.20 Y
3 1 "C3'" A US3 2 ? ? "O3'" A US3 2 ? ? P A G 3 ? ? 109.02 119.70 -10.68 1.20 Y
4 1 "O3'" A US3 2 ? ? P A G 3 ? ? OP2 A G 3 ? ? 122.47 110.50 11.97 1.10 Y
5 1 "C3'" A G 3 ? ? "O3'" A G 3 ? ? P A US3 4 ? ? 127.10 119.70 7.40 1.20 Y
6 1 "O3'" A US3 4 ? ? P A A 5 ? ? OP2 A A 5 ? ? 117.63 110.50 7.13 1.10 Y
7 1 "O5'" A A 7 ? ? P A A 7 ? ? OP2 A A 7 ? ? 95.20 105.70 -10.50 0.90 N
8 1 "O5'" A C 8 ? ? P A C 8 ? ? OP1 A C 8 ? ? 97.93 105.70 -7.77 0.90 N
9 1 "C3'" C US3 2 ? ? "O3'" C US3 2 ? ? P C G 3 ? ? 133.50 119.70 13.80 1.20 Y
10 1 "O3'" C US3 2 ? ? P C G 3 ? ? "O5'" C G 3 ? ? 92.20 104.00 -11.80 1.90 Y
11 1 "C3'" C G 3 ? ? "O3'" C G 3 ? ? P C US3 4 ? ? 132.49 119.70 12.79 1.20 Y
12 1 "O3'" C G 3 ? ? P C US3 4 ? ? OP1 C US3 4 ? ? 81.52 105.20 -23.68 2.20 Y
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A G 1 ? "O2'" ? A G 1 "O2'"
2 1 Y 1 A G 3 ? "O2'" ? A G 3 "O2'"
3 1 Y 1 A A 5 ? "O2'" ? A A 5 "O2'"
4 1 Y 1 A C 6 ? "O2'" ? A C 6 "O2'"
5 1 Y 1 A A 7 ? "O2'" ? A A 7 "O2'"
6 1 Y 1 A C 8 ? "O2'" ? A C 8 "O2'"
7 1 Y 1 C G 1 ? "O2'" ? B G 1 "O2'"
8 1 Y 1 C G 3 ? "O2'" ? B G 3 "O2'"
9 1 Y 1 C A 5 ? "O2'" ? B A 5 "O2'"
10 1 Y 1 C C 6 ? "O2'" ? B C 6 "O2'"
11 1 Y 1 C A 7 ? "O2'" ? B A 7 "O2'"
12 1 Y 1 C C 8 ? "O2'" ? B C 8 "O2'"
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A OP3 O N N 1
A P P N N 2
A OP1 O N N 3
A OP2 O N N 4
A "O5'" O N N 5
A "C5'" C N N 6
A "C4'" C N R 7
A "O4'" O N N 8
A "C3'" C N S 9
A "O3'" O N N 10
A "C2'" C N R 11
A "O2'" O N N 12
A "C1'" C N R 13
A N9 N Y N 14
A C8 C Y N 15
A N7 N Y N 16
A C5 C Y N 17
A C6 C Y N 18
A N6 N N N 19
A N1 N Y N 20
A C2 C Y N 21
A N3 N Y N 22
A C4 C Y N 23
A HOP3 H N N 24
A HOP2 H N N 25
A "H5'" H N N 26
A "H5''" H N N 27
A "H4'" H N N 28
A "H3'" H N N 29
A "HO3'" H N N 30
A "H2'" H N N 31
A "HO2'" H N N 32
A "H1'" H N N 33
A H8 H N N 34
A H61 H N N 35
A H62 H N N 36
A H2 H N N 37
C OP3 O N N 38
C P P N N 39
C OP1 O N N 40
C OP2 O N N 41
C "O5'" O N N 42
C "C5'" C N N 43
C "C4'" C N R 44
C "O4'" O N N 45
C "C3'" C N S 46
C "O3'" O N N 47
C "C2'" C N R 48
C "O2'" O N N 49
C "C1'" C N R 50
C N1 N N N 51
C C2 C N N 52
C O2 O N N 53
C N3 N N N 54
C C4 C N N 55
C N4 N N N 56
C C5 C N N 57
C C6 C N N 58
C HOP3 H N N 59
C HOP2 H N N 60
C "H5'" H N N 61
C "H5''" H N N 62
C "H4'" H N N 63
C "H3'" H N N 64
C "HO3'" H N N 65
C "H2'" H N N 66
C "HO2'" H N N 67
C "H1'" H N N 68
C H41 H N N 69
C H42 H N N 70
C H5 H N N 71
C H6 H N N 72
G OP3 O N N 73
G P P N N 74
G OP1 O N N 75
G OP2 O N N 76
G "O5'" O N N 77
G "C5'" C N N 78
G "C4'" C N R 79
G "O4'" O N N 80
G "C3'" C N S 81
G "O3'" O N N 82
G "C2'" C N R 83
G "O2'" O N N 84
G "C1'" C N R 85
G N9 N Y N 86
G C8 C Y N 87
G N7 N Y N 88
G C5 C Y N 89
G C6 C N N 90
G O6 O N N 91
G N1 N N N 92
G C2 C N N 93
G N2 N N N 94
G N3 N N N 95
G C4 C Y N 96
G HOP3 H N N 97
G HOP2 H N N 98
G "H5'" H N N 99
G "H5''" H N N 100
G "H4'" H N N 101
G "H3'" H N N 102
G "HO3'" H N N 103
G "H2'" H N N 104
G "HO2'" H N N 105
G "H1'" H N N 106
G H8 H N N 107
G H1 H N N 108
G H21 H N N 109
G H22 H N N 110
HOH O O N N 111
HOH H1 H N N 112
HOH H2 H N N 113
US3 P P N N 114
US3 N1 N N N 115
US3 C2 C N N 116
US3 SE2 SE N N 117
US3 N3 N N N 118
US3 C4 C N N 119
US3 O4 O N N 120
US3 C5 C N N 121
US3 C6 C N N 122
US3 "C1'" C N R 123
US3 OP3 O N N 124
US3 "C2'" C N N 125
US3 OP2 O N N 126
US3 "C3'" C N S 127
US3 "O3'" O N N 128
US3 "C4'" C N R 129
US3 "O4'" O N N 130
US3 "C5'" C N N 131
US3 "O5'" O N N 132
US3 C5A C N N 133
US3 H6 H N N 134
US3 "H1'" H N N 135
US3 HOP3 H N N 136
US3 "H2'" H N N 137
US3 "H2'A" H N N 138
US3 HOP2 H N N 139
US3 "H3'" H N N 140
US3 "HO3'" H N N 141
US3 "H4'" H N N 142
US3 "H5'" H N N 143
US3 "H5'A" H N N 144
US3 H5A H N N 145
US3 H5AA H N N 146
US3 H5AB H N N 147
US3 HSE2 H N N 148
US3 OP1 O N N 149
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A OP3 P sing N N 1
A OP3 HOP3 sing N N 2
A P OP1 doub N N 3
A P OP2 sing N N 4
A P "O5'" sing N N 5
A OP2 HOP2 sing N N 6
A "O5'" "C5'" sing N N 7
A "C5'" "C4'" sing N N 8
A "C5'" "H5'" sing N N 9
A "C5'" "H5''" sing N N 10
A "C4'" "O4'" sing N N 11
A "C4'" "C3'" sing N N 12
A "C4'" "H4'" sing N N 13
A "O4'" "C1'" sing N N 14
A "C3'" "O3'" sing N N 15
A "C3'" "C2'" sing N N 16
A "C3'" "H3'" sing N N 17
A "O3'" "HO3'" sing N N 18
A "C2'" "O2'" sing N N 19
A "C2'" "C1'" sing N N 20
A "C2'" "H2'" sing N N 21
A "O2'" "HO2'" sing N N 22
A "C1'" N9 sing N N 23
A "C1'" "H1'" sing N N 24
A N9 C8 sing Y N 25
A N9 C4 sing Y N 26
A C8 N7 doub Y N 27
A C8 H8 sing N N 28
A N7 C5 sing Y N 29
A C5 C6 sing Y N 30
A C5 C4 doub Y N 31
A C6 N6 sing N N 32
A C6 N1 doub Y N 33
A N6 H61 sing N N 34
A N6 H62 sing N N 35
A N1 C2 sing Y N 36
A C2 N3 doub Y N 37
A C2 H2 sing N N 38
A N3 C4 sing Y N 39
C OP3 P sing N N 40
C OP3 HOP3 sing N N 41
C P OP1 doub N N 42
C P OP2 sing N N 43
C P "O5'" sing N N 44
C OP2 HOP2 sing N N 45
C "O5'" "C5'" sing N N 46
C "C5'" "C4'" sing N N 47
C "C5'" "H5'" sing N N 48
C "C5'" "H5''" sing N N 49
C "C4'" "O4'" sing N N 50
C "C4'" "C3'" sing N N 51
C "C4'" "H4'" sing N N 52
C "O4'" "C1'" sing N N 53
C "C3'" "O3'" sing N N 54
C "C3'" "C2'" sing N N 55
C "C3'" "H3'" sing N N 56
C "O3'" "HO3'" sing N N 57
C "C2'" "O2'" sing N N 58
C "C2'" "C1'" sing N N 59
C "C2'" "H2'" sing N N 60
C "O2'" "HO2'" sing N N 61
C "C1'" N1 sing N N 62
C "C1'" "H1'" sing N N 63
C N1 C2 sing N N 64
C N1 C6 sing N N 65
C C2 O2 doub N N 66
C C2 N3 sing N N 67
C N3 C4 doub N N 68
C C4 N4 sing N N 69
C C4 C5 sing N N 70
C N4 H41 sing N N 71
C N4 H42 sing N N 72
C C5 C6 doub N N 73
C C5 H5 sing N N 74
C C6 H6 sing N N 75
G OP3 P sing N N 76
G OP3 HOP3 sing N N 77
G P OP1 doub N N 78
G P OP2 sing N N 79
G P "O5'" sing N N 80
G OP2 HOP2 sing N N 81
G "O5'" "C5'" sing N N 82
G "C5'" "C4'" sing N N 83
G "C5'" "H5'" sing N N 84
G "C5'" "H5''" sing N N 85
G "C4'" "O4'" sing N N 86
G "C4'" "C3'" sing N N 87
G "C4'" "H4'" sing N N 88
G "O4'" "C1'" sing N N 89
G "C3'" "O3'" sing N N 90
G "C3'" "C2'" sing N N 91
G "C3'" "H3'" sing N N 92
G "O3'" "HO3'" sing N N 93
G "C2'" "O2'" sing N N 94
G "C2'" "C1'" sing N N 95
G "C2'" "H2'" sing N N 96
G "O2'" "HO2'" sing N N 97
G "C1'" N9 sing N N 98
G "C1'" "H1'" sing N N 99
G N9 C8 sing Y N 100
G N9 C4 sing Y N 101
G C8 N7 doub Y N 102
G C8 H8 sing N N 103
G N7 C5 sing Y N 104
G C5 C6 sing N N 105
G C5 C4 doub Y N 106
G C6 O6 doub N N 107
G C6 N1 sing N N 108
G N1 C2 sing N N 109
G N1 H1 sing N N 110
G C2 N2 sing N N 111
G C2 N3 doub N N 112
G N2 H21 sing N N 113
G N2 H22 sing N N 114
G N3 C4 sing N N 115
HOH O H1 sing N N 116
HOH O H2 sing N N 117
US3 P OP2 sing N N 118
US3 N1 "C1'" sing N N 119
US3 N1 C6 sing N N 120
US3 C2 N1 sing N N 121
US3 C2 N3 doub N N 122
US3 SE2 C2 sing N N 123
US3 SE2 HSE2 sing N N 124
US3 N3 C4 sing N N 125
US3 C4 O4 doub N N 126
US3 C4 C5 sing N N 127
US3 C5 C5A sing N N 128
US3 C6 C5 doub N N 129
US3 C6 H6 sing N N 130
US3 "C1'" "O4'" sing N N 131
US3 "C1'" "H1'" sing N N 132
US3 OP3 P sing N N 133
US3 OP3 HOP3 sing N N 134
US3 "C2'" "C1'" sing N N 135
US3 "C2'" "C3'" sing N N 136
US3 "C2'" "H2'" sing N N 137
US3 "C2'" "H2'A" sing N N 138
US3 OP2 HOP2 sing N N 139
US3 "C3'" "C4'" sing N N 140
US3 "C3'" "H3'" sing N N 141
US3 "O3'" "C3'" sing N N 142
US3 "O3'" "HO3'" sing N N 143
US3 "C4'" "O4'" sing N N 144
US3 "C4'" "C5'" sing N N 145
US3 "C4'" "H4'" sing N N 146
US3 "C5'" "O5'" sing N N 147
US3 "C5'" "H5'" sing N N 148
US3 "C5'" "H5'A" sing N N 149
US3 "O5'" P sing N N 150
US3 C5A H5A sing N N 151
US3 C5A H5AA sing N N 152
US3 C5A H5AB sing N N 153
US3 P OP1 doub N N 154
#
_ndb_struct_conf_na.entry_id 5TGP
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A G 1 1_555 B C 8 1_555 -0.265 -0.087 -0.018 -12.200 -4.682 0.502 1 A_G1:C8_C A 1 ? C 8 ? 19 1
1 A US3 2 1_555 B A 7 1_555 -0.294 -0.115 0.126 -10.780 -12.192 -3.841 2 A_US32:A7_C A 2 ? C 7 ? 20 1
1 A G 3 1_555 B C 6 1_555 -0.168 -0.140 0.029 -6.652 -8.494 0.156 3 A_G3:C6_C A 3 ? C 6 ? 19 1
1 A US3 4 1_555 B A 5 1_555 -0.214 -0.109 -0.082 -2.719 -9.800 -5.796 4 A_US34:A5_C A 4 ? C 5 ? 20 1
1 A A 5 1_555 B US3 4 1_555 0.359 -0.076 0.025 1.288 -8.919 -5.229 5 A_A5:US34_C A 5 ? C 4 ? 20 1
1 A C 6 1_555 B G 3 1_555 0.249 -0.165 0.192 5.304 -9.978 -1.985 6 A_C6:G3_C A 6 ? C 3 ? 19 1
1 A A 7 1_555 B US3 2 1_555 0.154 -0.172 0.143 7.673 -12.070 -2.550 7 A_A7:US32_C A 7 ? C 2 ? 20 1
1 A C 8 1_555 B G 1 1_555 0.212 -0.192 0.072 2.324 -0.128 -1.937 8 A_C8:G1_C A 8 ? C 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A G 1 1_555 B C 8 1_555 A US3 2 1_555 B A 7 1_555 -0.054 -2.055 3.340 1.401 5.194 33.554 -4.328 0.312 2.993 8.926
-2.408 33.970 1 AA_G1US32:A7C8_CC A 1 ? C 8 ? A 2 ? C 7 ?
1 A US3 2 1_555 B A 7 1_555 A G 3 1_555 B C 6 1_555 0.360 -1.443 3.129 1.960 10.659 28.072 -4.714 -0.339 2.448 21.010
-3.863 30.052 2 AA_US32G3:C6A7_CC A 2 ? C 7 ? A 3 ? C 6 ?
1 A G 3 1_555 B C 6 1_555 A US3 4 1_555 B A 5 1_555 -0.819 -1.396 3.266 0.123 6.378 33.421 -3.363 1.419 2.954 10.965
-0.211 34.007 3 AA_G3US34:A5C6_CC A 3 ? C 6 ? A 4 ? C 5 ?
1 A US3 4 1_555 B A 5 1_555 A A 5 1_555 B US3 4 1_555 0.163 -1.200 3.216 -0.441 9.945 31.580 -3.670 -0.356 2.720 17.731
0.786 33.073 4 AA_US34A5:US34A5_CC A 4 ? C 5 ? A 5 ? C 4 ?
1 A A 5 1_555 B US3 4 1_555 A C 6 1_555 B G 3 1_555 0.614 -1.492 3.308 -0.715 4.683 34.004 -3.247 -1.150 3.068 7.960
1.215 34.322 5 AA_A5C6:G3US34_CC A 5 ? C 4 ? A 6 ? C 3 ?
1 A C 6 1_555 B G 3 1_555 A A 7 1_555 B US3 2 1_555 0.026 -1.642 3.084 -1.131 8.929 28.719 -4.755 -0.252 2.470 17.467
2.212 30.068 6 AA_C6A7:US32G3_CC A 6 ? C 3 ? A 7 ? C 2 ?
1 A A 7 1_555 B US3 2 1_555 A C 8 1_555 B G 1 1_555 -0.089 -2.275 3.486 -1.826 4.098 35.292 -4.338 -0.127 3.210 6.726
2.997 35.567 7 AA_A7C8:G1US32_CC A 7 ? C 2 ? A 8 ? C 1 ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1DNS
_pdbx_initial_refinement_model.details ?
#