data_5BZ7
#
_entry.id 5BZ7
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5BZ7 pdb_00005bz7 10.2210/pdb5bz7/pdb
WWPDB D_1000210742 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
PDB '5BXW is a related sequence forming an isomorphous structure.' 5BXW unspecified
PDB . 5BZ9 unspecified
PDB . 5BZY unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5BZ7
_pdbx_database_status.recvd_initial_deposition_date 2015-06-11
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Saoji, M.' 1
'Paukstelis, P.J.' 2
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Acta Crystallogr.,Sect.D'
_citation.journal_id_ASTM ABCRE6
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1399-0047
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 71
_citation.language ?
_citation.page_first 2471
_citation.page_last 2478
_citation.title 'Sequence-dependent structural changes in a self-assembling DNA oligonucleotide.'
_citation.year 2015
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1107/S1399004715019598
_citation.pdbx_database_id_PubMed 26627654
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Saoji, M.' 1 ?
primary 'Paukstelis, P.J.' 2 ?
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 120.00
_cell.angle_gamma_esd ?
_cell.entry_id 5BZ7
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 26.013
_cell.length_a_esd ?
_cell.length_b 26.013
_cell.length_b_esd ?
_cell.length_c 122.022
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 6
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5BZ7
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 152
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 31 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*GP*AP*GP*A)-3')
;
4392.891 1 ? ? ? ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ?
3 water nat water 18.015 13 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DA)(DA)(DA)(DA)(DT)(DT)(DT)(DG)(DG)(DA)(DG)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can GGAAAATTTGGAGA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DG n
1 3 DA n
1 4 DA n
1 5 DA n
1 6 DA n
1 7 DT n
1 8 DT n
1 9 DT n
1 10 DG n
1 11 DG n
1 12 DA n
1 13 DG n
1 14 DA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 14
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 5BZ7
_struct_ref.pdbx_db_accession 5BZ7
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 5BZ7
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 13
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 5BZ7
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 13
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 13
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5BZ7
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.66
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 53.78
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 296.15
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;120mM Magnesium Formate
50mM Lithium Chloride
10% MPD
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 77.15
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector PIXEL
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'PSI PILATUS 6M'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2014-06-29
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator 'Si(111)'
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.979200
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'APS BEAMLINE 24-ID-C'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.979200
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline 24-ID-C
_diffrn_source.pdbx_synchrotron_site APS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 5BZ7
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 2.03
_reflns.d_resolution_low 22.53
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 3436
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 99.4
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 10.3
_reflns.pdbx_Rmerge_I_obs 0.111
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 13.9
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 2.03
_reflns_shell.d_res_low 2.09
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 1.0
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all 97.3
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs 0.979
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy 6.9
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] -0.00
_refine.aniso_B[1][2] -0.00
_refine.aniso_B[1][3] -0.00
_refine.aniso_B[2][2] -0.00
_refine.aniso_B[2][3] 0.00
_refine.aniso_B[3][3] 0.00
_refine.B_iso_max ?
_refine.B_iso_mean 57.957
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.961
_refine.correlation_coeff_Fo_to_Fc_free 0.950
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5BZ7
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 2.03
_refine.ls_d_res_low 22.53
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 3092
_refine.ls_number_reflns_R_free 344
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 97.78
_refine.ls_percent_reflns_R_free 10.0
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.23875
_refine.ls_R_factor_R_free 0.29340
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.23352
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details MASK
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 5BXW
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.201
_refine.pdbx_overall_ESU_R_Free 0.196
_refine.pdbx_solvent_vdw_probe_radii 1.00
_refine.pdbx_solvent_ion_probe_radii 0.70
_refine.pdbx_solvent_shrinkage_radii 0.70
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 7.263
_refine.overall_SU_ML 0.174
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id 1
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 293
_refine_hist.pdbx_number_atoms_ligand 2
_refine_hist.number_atoms_solvent 13
_refine_hist.number_atoms_total 308
_refine_hist.d_res_high 2.03
_refine_hist.d_res_low 22.53
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.007 0.011 331 ? r_bond_refined_d ? ?
'X-RAY DIFFRACTION' ? 0.001 0.020 158 ? r_bond_other_d ? ?
'X-RAY DIFFRACTION' ? 1.567 1.150 511 ? r_angle_refined_deg ? ?
'X-RAY DIFFRACTION' ? 3.377 3.000 374 ? r_angle_other_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ?
'X-RAY DIFFRACTION' ? 0.163 0.200 42 ? r_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.016 0.020 176 ? r_gen_planes_refined ? ?
'X-RAY DIFFRACTION' ? 0.002 0.020 70 ? r_gen_planes_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ?
'X-RAY DIFFRACTION' ? 7.673 5.896 331 ? r_scbond_it ? ?
'X-RAY DIFFRACTION' ? 7.662 5.892 332 ? r_scbond_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ?
'X-RAY DIFFRACTION' ? 11.343 8.885 511 ? r_scangle_other ? ?
'X-RAY DIFFRACTION' ? 11.111 54.806 483 ? r_long_range_B_refined ? ?
'X-RAY DIFFRACTION' ? 11.106 54.773 483 ? r_long_range_B_other ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ?
'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.d_res_high 2.03
_refine_ls_shell.d_res_low 2.077
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 22
_refine_ls_shell.number_reflns_R_work 206
_refine_ls_shell.percent_reflns_obs 91.20
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.538
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.502
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 5BZ7
_struct.title 'X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice.'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag ?
#
_struct_keywords.entry_id 5BZ7
_struct_keywords.text '3D DNA lattice, 14mer DNA, Self assembly, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 204 5_564 ? ? ? ? ? ? ? 2.136 ? ?
metalc2 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 213 1_555 ? ? ? ? ? ? ? 2.083 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 11 N7 ? ? A DG 1 A DG 11 4_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 11 O6 ? ? A DG 1 A DG 11 4_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog3 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DG 10 N3 ? ? A DA 3 A DG 10 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog4 hydrog ? ? A DA 3 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DA 3 A DG 10 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog5 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 9 N3 ? ? A DA 4 A DT 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 9 O4 ? ? A DA 4 A DT 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 5 A DT 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 5 A DT 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 6 A DT 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 6 A DT 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 7 A DA 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 7 A DA 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 8 A DA 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 8 A DA 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DT 9 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 9 A DA 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DT 9 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 9 A DA 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DA 3 N7 ? ? A DG 10 A DA 3 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog18 hydrog ? ? A DG 10 N3 ? ? ? 1_555 A DA 3 N6 ? ? A DG 10 A DA 3 4_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ?
hydrog19 hydrog ? ? A DG 11 N7 ? ? ? 1_555 A DG 1 N1 ? ? A DG 11 A DG 1 4_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
hydrog20 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DG 1 N2 ? ? A DG 11 A DG 1 4_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id MG
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 3
_struct_site.details 'binding site for residue MG A 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 3 DG A 1 ? DG A 1 . ? 4_565 ?
2 AC1 3 HOH D . ? HOH A 204 . ? 5_564 ?
3 AC1 3 HOH D . ? HOH A 213 . ? 1_555 ?
#
_atom_sites.entry_id 5BZ7
_atom_sites.fract_transf_matrix[1][1] 0.038442
_atom_sites.fract_transf_matrix[1][2] 0.022195
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.044389
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.008195
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MG
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -4.719 -3.414 20.868 1.00 61.33 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -4.923 -2.015 21.241 1.00 60.86 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -4.127 -1.090 20.346 1.00 57.06 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -2.694 -1.318 20.269 1.00 53.93 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -4.588 -0.750 18.937 1.00 52.01 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -4.464 0.654 18.678 1.00 65.03 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -3.587 -1.524 18.099 1.00 48.87 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -2.295 -1.399 18.905 1.00 45.80 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -1.366 -2.521 18.771 1.00 41.63 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -1.708 -3.853 18.745 1.00 40.46 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -0.675 -4.645 18.622 1.00 43.74 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 0.418 -3.789 18.600 1.00 38.86 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 1.796 -4.074 18.485 1.00 42.68 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 2.348 -5.179 18.375 1.00 46.01 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 2.560 -2.909 18.475 1.00 39.13 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 2.057 -1.637 18.602 1.00 38.73 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 2.954 -0.649 18.599 1.00 47.33 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 0.772 -1.358 18.722 1.00 41.76 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 0.012 -2.474 18.713 1.00 39.01 ? 1 DG A C4 1
ATOM 20 P P . DG A 1 2 ? -5.103 1.329 17.323 1.00 75.92 ? 2 DG A P 1
ATOM 21 O OP1 . DG A 1 2 ? -5.333 2.760 17.626 1.00 77.41 ? 2 DG A OP1 1
ATOM 22 O OP2 . DG A 1 2 ? -6.189 0.423 16.806 1.00 77.41 ? 2 DG A OP2 1
ATOM 23 O "O5'" . DG A 1 2 ? -3.961 1.280 16.208 1.00 60.97 ? 2 DG A "O5'" 1
ATOM 24 C "C5'" . DG A 1 2 ? -2.666 1.829 16.457 1.00 57.36 ? 2 DG A "C5'" 1
ATOM 25 C "C4'" . DG A 1 2 ? -1.687 1.361 15.406 1.00 62.06 ? 2 DG A "C4'" 1
ATOM 26 O "O4'" . DG A 1 2 ? -1.390 -0.047 15.564 1.00 57.50 ? 2 DG A "O4'" 1
ATOM 27 C "C3'" . DG A 1 2 ? -2.165 1.504 13.963 1.00 59.63 ? 2 DG A "C3'" 1
ATOM 28 O "O3'" . DG A 1 2 ? -1.033 1.706 13.112 1.00 62.85 ? 2 DG A "O3'" 1
ATOM 29 C "C2'" . DG A 1 2 ? -2.737 0.133 13.663 1.00 58.40 ? 2 DG A "C2'" 1
ATOM 30 C "C1'" . DG A 1 2 ? -1.708 -0.735 14.350 1.00 57.51 ? 2 DG A "C1'" 1
ATOM 31 N N9 . DG A 1 2 ? -2.116 -2.092 14.700 1.00 41.68 ? 2 DG A N9 1
ATOM 32 C C8 . DG A 1 2 ? -3.379 -2.587 14.944 1.00 43.01 ? 2 DG A C8 1
ATOM 33 N N7 . DG A 1 2 ? -3.376 -3.848 15.286 1.00 45.56 ? 2 DG A N7 1
ATOM 34 C C5 . DG A 1 2 ? -2.031 -4.200 15.274 1.00 40.50 ? 2 DG A C5 1
ATOM 35 C C6 . DG A 1 2 ? -1.398 -5.427 15.595 1.00 51.55 ? 2 DG A C6 1
ATOM 36 O O6 . DG A 1 2 ? -1.923 -6.505 15.927 1.00 52.28 ? 2 DG A O6 1
ATOM 37 N N1 . DG A 1 2 ? -0.011 -5.335 15.473 1.00 45.09 ? 2 DG A N1 1
ATOM 38 C C2 . DG A 1 2 ? 0.674 -4.199 15.115 1.00 42.52 ? 2 DG A C2 1
ATOM 39 N N2 . DG A 1 2 ? 2.017 -4.300 15.050 1.00 43.26 ? 2 DG A N2 1
ATOM 40 N N3 . DG A 1 2 ? 0.091 -3.051 14.819 1.00 37.26 ? 2 DG A N3 1
ATOM 41 C C4 . DG A 1 2 ? -1.246 -3.122 14.920 1.00 38.12 ? 2 DG A C4 1
ATOM 42 P P . DA A 1 3 ? -0.825 3.115 12.403 1.00 70.02 ? 3 DA A P 1
ATOM 43 O OP1 . DA A 1 3 ? -1.168 4.145 13.419 1.00 77.41 ? 3 DA A OP1 1
ATOM 44 O OP2 . DA A 1 3 ? -1.582 3.088 11.114 1.00 75.78 ? 3 DA A OP2 1
ATOM 45 O "O5'" . DA A 1 3 ? 0.740 3.111 12.100 1.00 63.76 ? 3 DA A "O5'" 1
ATOM 46 C "C5'" . DA A 1 3 ? 1.655 3.494 13.137 1.00 57.48 ? 3 DA A "C5'" 1
ATOM 47 C "C4'" . DA A 1 3 ? 3.060 3.107 12.757 1.00 61.05 ? 3 DA A "C4'" 1
ATOM 48 O "O4'" . DA A 1 3 ? 3.158 1.677 12.854 1.00 56.92 ? 3 DA A "O4'" 1
ATOM 49 C "C3'" . DA A 1 3 ? 3.483 3.437 11.329 1.00 63.97 ? 3 DA A "C3'" 1
ATOM 50 O "O3'" . DA A 1 3 ? 4.898 3.641 11.282 1.00 69.40 ? 3 DA A "O3'" 1
ATOM 51 C "C2'" . DA A 1 3 ? 3.152 2.164 10.572 1.00 60.13 ? 3 DA A "C2'" 1
ATOM 52 C "C1'" . DA A 1 3 ? 3.491 1.111 11.600 1.00 54.00 ? 3 DA A "C1'" 1
ATOM 53 N N9 . DA A 1 3 ? 2.741 -0.138 11.475 1.00 44.41 ? 3 DA A N9 1
ATOM 54 C C8 . DA A 1 3 ? 1.408 -0.358 11.724 1.00 40.33 ? 3 DA A C8 1
ATOM 55 N N7 . DA A 1 3 ? 1.044 -1.611 11.569 1.00 48.40 ? 3 DA A N7 1
ATOM 56 C C5 . DA A 1 3 ? 2.227 -2.265 11.237 1.00 38.46 ? 3 DA A C5 1
ATOM 57 C C6 . DA A 1 3 ? 2.515 -3.607 10.918 1.00 43.16 ? 3 DA A C6 1
ATOM 58 N N6 . DA A 1 3 ? 1.604 -4.582 10.902 1.00 47.87 ? 3 DA A N6 1
ATOM 59 N N1 . DA A 1 3 ? 3.793 -3.919 10.616 1.00 44.10 ? 3 DA A N1 1
ATOM 60 C C2 . DA A 1 3 ? 4.712 -2.945 10.621 1.00 48.48 ? 3 DA A C2 1
ATOM 61 N N3 . DA A 1 3 ? 4.563 -1.649 10.898 1.00 48.02 ? 3 DA A N3 1
ATOM 62 C C4 . DA A 1 3 ? 3.284 -1.372 11.206 1.00 40.25 ? 3 DA A C4 1
ATOM 63 P P . DA A 1 4 ? 5.548 4.328 9.993 1.00 80.87 ? 4 DA A P 1
ATOM 64 O OP1 . DA A 1 4 ? 6.883 4.855 10.389 1.00 81.77 ? 4 DA A OP1 1
ATOM 65 O OP2 . DA A 1 4 ? 4.514 5.257 9.427 1.00 68.78 ? 4 DA A OP2 1
ATOM 66 O "O5'" . DA A 1 4 ? 5.753 3.087 9.001 1.00 73.11 ? 4 DA A "O5'" 1
ATOM 67 C "C5'" . DA A 1 4 ? 6.876 2.165 9.070 1.00 62.19 ? 4 DA A "C5'" 1
ATOM 68 C "C4'" . DA A 1 4 ? 6.726 1.059 8.041 1.00 68.06 ? 4 DA A "C4'" 1
ATOM 69 O "O4'" . DA A 1 4 ? 5.473 0.356 8.245 1.00 63.45 ? 4 DA A "O4'" 1
ATOM 70 C "C3'" . DA A 1 4 ? 6.704 1.480 6.563 1.00 69.40 ? 4 DA A "C3'" 1
ATOM 71 O "O3'" . DA A 1 4 ? 7.182 0.434 5.704 1.00 77.77 ? 4 DA A "O3'" 1
ATOM 72 C "C2'" . DA A 1 4 ? 5.223 1.549 6.246 1.00 62.71 ? 4 DA A "C2'" 1
ATOM 73 C "C1'" . DA A 1 4 ? 4.742 0.339 7.017 1.00 53.42 ? 4 DA A "C1'" 1
ATOM 74 N N9 . DA A 1 4 ? 3.315 0.312 7.338 1.00 48.66 ? 4 DA A N9 1
ATOM 75 C C8 . DA A 1 4 ? 2.424 1.346 7.494 1.00 46.06 ? 4 DA A C8 1
ATOM 76 N N7 . DA A 1 4 ? 1.202 0.953 7.771 1.00 45.68 ? 4 DA A N7 1
ATOM 77 C C5 . DA A 1 4 ? 1.300 -0.432 7.820 1.00 42.42 ? 4 DA A C5 1
ATOM 78 C C6 . DA A 1 4 ? 0.358 -1.436 8.085 1.00 43.68 ? 4 DA A C6 1
ATOM 79 N N6 . DA A 1 4 ? -0.918 -1.191 8.387 1.00 52.26 ? 4 DA A N6 1
ATOM 80 N N1 . DA A 1 4 ? 0.777 -2.719 8.038 1.00 45.54 ? 4 DA A N1 1
ATOM 81 C C2 . DA A 1 4 ? 2.064 -2.966 7.758 1.00 49.77 ? 4 DA A C2 1
ATOM 82 N N3 . DA A 1 4 ? 3.047 -2.107 7.500 1.00 50.01 ? 4 DA A N3 1
ATOM 83 C C4 . DA A 1 4 ? 2.590 -0.842 7.539 1.00 44.71 ? 4 DA A C4 1
ATOM 84 P P . DA A 1 5 ? 8.336 0.728 4.637 1.00 78.15 ? 5 DA A P 1
ATOM 85 O OP1 . DA A 1 5 ? 9.435 1.430 5.345 1.00 102.49 ? 5 DA A OP1 1
ATOM 86 O OP2 . DA A 1 5 ? 7.720 1.334 3.427 1.00 69.51 ? 5 DA A OP2 1
ATOM 87 O "O5'" . DA A 1 5 ? 8.882 -0.718 4.241 1.00 83.33 ? 5 DA A "O5'" 1
ATOM 88 C "C5'" . DA A 1 5 ? 8.714 -1.886 5.062 1.00 78.84 ? 5 DA A "C5'" 1
ATOM 89 C "C4'" . DA A 1 5 ? 7.857 -2.921 4.361 1.00 80.88 ? 5 DA A "C4'" 1
ATOM 90 O "O4'" . DA A 1 5 ? 6.448 -2.716 4.632 1.00 74.51 ? 5 DA A "O4'" 1
ATOM 91 C "C3'" . DA A 1 5 ? 7.979 -3.015 2.835 1.00 76.70 ? 5 DA A "C3'" 1
ATOM 92 O "O3'" . DA A 1 5 ? 8.294 -4.386 2.573 1.00 89.20 ? 5 DA A "O3'" 1
ATOM 93 C "C2'" . DA A 1 5 ? 6.629 -2.526 2.325 1.00 59.51 ? 5 DA A "C2'" 1
ATOM 94 C "C1'" . DA A 1 5 ? 5.704 -2.936 3.448 1.00 62.52 ? 5 DA A "C1'" 1
ATOM 95 N N9 . DA A 1 5 ? 4.444 -2.209 3.595 1.00 50.29 ? 5 DA A N9 1
ATOM 96 C C8 . DA A 1 5 ? 4.196 -0.858 3.529 1.00 53.35 ? 5 DA A C8 1
ATOM 97 N N7 . DA A 1 5 ? 2.957 -0.533 3.817 1.00 44.00 ? 5 DA A N7 1
ATOM 98 C C5 . DA A 1 5 ? 2.363 -1.748 4.142 1.00 42.73 ? 5 DA A C5 1
ATOM 99 C C6 . DA A 1 5 ? 1.052 -2.089 4.525 1.00 41.47 ? 5 DA A C6 1
ATOM 100 N N6 . DA A 1 5 ? 0.067 -1.197 4.694 1.00 48.25 ? 5 DA A N6 1
ATOM 101 N N1 . DA A 1 5 ? 0.787 -3.390 4.760 1.00 49.90 ? 5 DA A N1 1
ATOM 102 C C2 . DA A 1 5 ? 1.780 -4.286 4.611 1.00 55.76 ? 5 DA A C2 1
ATOM 103 N N3 . DA A 1 5 ? 3.049 -4.088 4.259 1.00 50.14 ? 5 DA A N3 1
ATOM 104 C C4 . DA A 1 5 ? 3.276 -2.784 4.030 1.00 47.87 ? 5 DA A C4 1
ATOM 105 P P . DA A 1 6 ? 8.230 -4.980 1.100 1.00 98.12 ? 6 DA A P 1
ATOM 106 O OP1 . DA A 1 6 ? 9.366 -5.922 0.954 1.00 84.57 ? 6 DA A OP1 1
ATOM 107 O OP2 . DA A 1 6 ? 8.047 -3.859 0.138 1.00 94.38 ? 6 DA A OP2 1
ATOM 108 O "O5'" . DA A 1 6 ? 6.882 -5.827 1.122 1.00 92.84 ? 6 DA A "O5'" 1
ATOM 109 C "C5'" . DA A 1 6 ? 6.788 -7.043 1.881 1.00 82.95 ? 6 DA A "C5'" 1
ATOM 110 C "C4'" . DA A 1 6 ? 5.499 -7.749 1.536 1.00 77.83 ? 6 DA A "C4'" 1
ATOM 111 O "O4'" . DA A 1 6 ? 4.380 -6.874 1.806 1.00 77.25 ? 6 DA A "O4'" 1
ATOM 112 C "C3'" . DA A 1 6 ? 5.377 -8.128 0.066 1.00 77.74 ? 6 DA A "C3'" 1
ATOM 113 O "O3'" . DA A 1 6 ? 4.760 -9.417 -0.014 1.00 90.36 ? 6 DA A "O3'" 1
ATOM 114 C "C2'" . DA A 1 6 ? 4.582 -6.975 -0.521 1.00 72.08 ? 6 DA A "C2'" 1
ATOM 115 C "C1'" . DA A 1 6 ? 3.645 -6.630 0.618 1.00 67.25 ? 6 DA A "C1'" 1
ATOM 116 N N9 . DA A 1 6 ? 3.145 -5.251 0.665 1.00 53.37 ? 6 DA A N9 1
ATOM 117 C C8 . DA A 1 6 ? 3.796 -4.075 0.385 1.00 51.38 ? 6 DA A C8 1
ATOM 118 N N7 . DA A 1 6 ? 3.046 -3.007 0.540 1.00 51.00 ? 6 DA A N7 1
ATOM 119 C C5 . DA A 1 6 ? 1.824 -3.515 0.954 1.00 42.67 ? 6 DA A C5 1
ATOM 120 C C6 . DA A 1 6 ? 0.601 -2.905 1.251 1.00 40.74 ? 6 DA A C6 1
ATOM 121 N N6 . DA A 1 6 ? 0.400 -1.592 1.217 1.00 52.40 ? 6 DA A N6 1
ATOM 122 N N1 . DA A 1 6 ? -0.432 -3.701 1.586 1.00 45.61 ? 6 DA A N1 1
ATOM 123 C C2 . DA A 1 6 ? -0.241 -5.021 1.609 1.00 41.51 ? 6 DA A C2 1
ATOM 124 N N3 . DA A 1 6 ? 0.857 -5.715 1.344 1.00 46.32 ? 6 DA A N3 1
ATOM 125 C C4 . DA A 1 6 ? 1.862 -4.896 1.007 1.00 47.26 ? 6 DA A C4 1
ATOM 126 P P . DT A 1 7 ? 4.378 -10.058 -1.438 1.00 107.50 ? 7 DT A P 1
ATOM 127 O OP1 . DT A 1 7 ? 4.421 -11.535 -1.311 1.00 85.69 ? 7 DT A OP1 1
ATOM 128 O OP2 . DT A 1 7 ? 5.167 -9.370 -2.501 1.00 108.17 ? 7 DT A OP2 1
ATOM 129 O "O5'" . DT A 1 7 ? 2.845 -9.677 -1.553 1.00 76.94 ? 7 DT A "O5'" 1
ATOM 130 C "C5'" . DT A 1 7 ? 2.020 -9.875 -0.410 1.00 76.78 ? 7 DT A "C5'" 1
ATOM 131 C "C4'" . DT A 1 7 ? 0.592 -9.625 -0.809 1.00 83.19 ? 7 DT A "C4'" 1
ATOM 132 O "O4'" . DT A 1 7 ? 0.305 -8.210 -0.722 1.00 76.44 ? 7 DT A "O4'" 1
ATOM 133 C "C3'" . DT A 1 7 ? 0.289 -10.030 -2.253 1.00 92.00 ? 7 DT A "C3'" 1
ATOM 134 O "O3'" . DT A 1 7 ? -0.987 -10.683 -2.220 1.00 100.06 ? 7 DT A "O3'" 1
ATOM 135 C "C2'" . DT A 1 7 ? 0.329 -8.707 -3.001 1.00 81.55 ? 7 DT A "C2'" 1
ATOM 136 C "C1'" . DT A 1 7 ? -0.268 -7.786 -1.951 1.00 76.16 ? 7 DT A "C1'" 1
ATOM 137 N N1 . DT A 1 7 ? 0.006 -6.351 -2.096 1.00 55.49 ? 7 DT A N1 1
ATOM 138 C C2 . DT A 1 7 ? -1.006 -5.462 -1.816 1.00 50.25 ? 7 DT A C2 1
ATOM 139 O O2 . DT A 1 7 ? -2.127 -5.807 -1.486 1.00 57.99 ? 7 DT A O2 1
ATOM 140 N N3 . DT A 1 7 ? -0.655 -4.141 -1.931 1.00 53.83 ? 7 DT A N3 1
ATOM 141 C C4 . DT A 1 7 ? 0.587 -3.634 -2.256 1.00 50.74 ? 7 DT A C4 1
ATOM 142 O O4 . DT A 1 7 ? 0.755 -2.417 -2.307 1.00 54.53 ? 7 DT A O4 1
ATOM 143 C C5 . DT A 1 7 ? 1.611 -4.624 -2.513 1.00 54.35 ? 7 DT A C5 1
ATOM 144 C C7 . DT A 1 7 ? 2.982 -4.169 -2.902 1.00 55.22 ? 7 DT A C7 1
ATOM 145 C C6 . DT A 1 7 ? 1.275 -5.916 -2.415 1.00 58.96 ? 7 DT A C6 1
ATOM 146 P P . DT A 1 8 ? -1.602 -11.373 -3.530 1.00 87.95 ? 8 DT A P 1
ATOM 147 O OP1 . DT A 1 8 ? -2.142 -12.693 -3.098 1.00 112.91 ? 8 DT A OP1 1
ATOM 148 O OP2 . DT A 1 8 ? -0.568 -11.321 -4.618 1.00 74.02 ? 8 DT A OP2 1
ATOM 149 O "O5'" . DT A 1 8 ? -2.828 -10.402 -3.874 1.00 80.92 ? 8 DT A "O5'" 1
ATOM 150 C "C5'" . DT A 1 8 ? -3.746 -9.965 -2.841 1.00 68.85 ? 8 DT A "C5'" 1
ATOM 151 C "C4'" . DT A 1 8 ? -4.793 -9.027 -3.399 1.00 72.70 ? 8 DT A "C4'" 1
ATOM 152 O "O4'" . DT A 1 8 ? -4.299 -7.668 -3.365 1.00 72.58 ? 8 DT A "O4'" 1
ATOM 153 C "C3'" . DT A 1 8 ? -5.219 -9.296 -4.848 1.00 75.64 ? 8 DT A "C3'" 1
ATOM 154 O "O3'" . DT A 1 8 ? -6.655 -9.341 -4.970 1.00 76.77 ? 8 DT A "O3'" 1
ATOM 155 C "C2'" . DT A 1 8 ? -4.590 -8.155 -5.631 1.00 65.92 ? 8 DT A "C2'" 1
ATOM 156 C "C1'" . DT A 1 8 ? -4.529 -7.031 -4.609 1.00 63.80 ? 8 DT A "C1'" 1
ATOM 157 N N1 . DT A 1 8 ? -3.427 -6.071 -4.835 1.00 51.81 ? 8 DT A N1 1
ATOM 158 C C2 . DT A 1 8 ? -3.669 -4.717 -4.766 1.00 46.27 ? 8 DT A C2 1
ATOM 159 O O2 . DT A 1 8 ? -4.760 -4.244 -4.491 1.00 54.78 ? 8 DT A O2 1
ATOM 160 N N3 . DT A 1 8 ? -2.571 -3.930 -5.012 1.00 44.65 ? 8 DT A N3 1
ATOM 161 C C4 . DT A 1 8 ? -1.297 -4.355 -5.329 1.00 44.40 ? 8 DT A C4 1
ATOM 162 O O4 . DT A 1 8 ? -0.411 -3.538 -5.524 1.00 49.34 ? 8 DT A O4 1
ATOM 163 C C5 . DT A 1 8 ? -1.131 -5.784 -5.433 1.00 48.07 ? 8 DT A C5 1
ATOM 164 C C7 . DT A 1 8 ? 0.206 -6.333 -5.816 1.00 53.76 ? 8 DT A C7 1
ATOM 165 C C6 . DT A 1 8 ? -2.189 -6.558 -5.185 1.00 51.06 ? 8 DT A C6 1
ATOM 166 P P . DT A 1 9 ? -7.356 -9.786 -6.365 1.00 79.19 ? 9 DT A P 1
ATOM 167 O OP1 . DT A 1 9 ? -8.703 -10.338 -6.059 1.00 78.99 ? 9 DT A OP1 1
ATOM 168 O OP2 . DT A 1 9 ? -6.357 -10.550 -7.198 1.00 67.77 ? 9 DT A OP2 1
ATOM 169 O "O5'" . DT A 1 9 ? -7.680 -8.388 -7.064 1.00 84.46 ? 9 DT A "O5'" 1
ATOM 170 C "C5'" . DT A 1 9 ? -8.536 -7.415 -6.410 1.00 84.27 ? 9 DT A "C5'" 1
ATOM 171 C "C4'" . DT A 1 9 ? -8.522 -6.100 -7.159 1.00 70.27 ? 9 DT A "C4'" 1
ATOM 172 O "O4'" . DT A 1 9 ? -7.204 -5.495 -7.068 1.00 65.02 ? 9 DT A "O4'" 1
ATOM 173 C "C3'" . DT A 1 9 ? -8.834 -6.206 -8.661 1.00 54.46 ? 9 DT A "C3'" 1
ATOM 174 O "O3'" . DT A 1 9 ? -9.754 -5.141 -8.955 1.00 57.43 ? 9 DT A "O3'" 1
ATOM 175 C "C2'" . DT A 1 9 ? -7.460 -6.071 -9.296 1.00 51.86 ? 9 DT A "C2'" 1
ATOM 176 C "C1'" . DT A 1 9 ? -6.865 -5.037 -8.364 1.00 57.16 ? 9 DT A "C1'" 1
ATOM 177 N N1 . DT A 1 9 ? -5.414 -4.826 -8.414 1.00 50.31 ? 9 DT A N1 1
ATOM 178 C C2 . DT A 1 9 ? -4.944 -3.538 -8.261 1.00 44.23 ? 9 DT A C2 1
ATOM 179 O O2 . DT A 1 9 ? -5.671 -2.577 -8.069 1.00 49.20 ? 9 DT A O2 1
ATOM 180 N N3 . DT A 1 9 ? -3.584 -3.416 -8.333 1.00 42.49 ? 9 DT A N3 1
ATOM 181 C C4 . DT A 1 9 ? -2.666 -4.427 -8.517 1.00 41.11 ? 9 DT A C4 1
ATOM 182 O O4 . DT A 1 9 ? -1.466 -4.164 -8.546 1.00 47.58 ? 9 DT A O4 1
ATOM 183 C C5 . DT A 1 9 ? -3.225 -5.747 -8.666 1.00 42.69 ? 9 DT A C5 1
ATOM 184 C C7 . DT A 1 9 ? -2.302 -6.904 -8.875 1.00 51.58 ? 9 DT A C7 1
ATOM 185 C C6 . DT A 1 9 ? -4.556 -5.876 -8.632 1.00 48.87 ? 9 DT A C6 1
ATOM 186 P P . DG A 1 10 ? -10.636 -5.131 -10.314 1.00 63.99 ? 10 DG A P 1
ATOM 187 O OP1 . DG A 1 10 ? -11.985 -4.627 -9.965 1.00 55.39 ? 10 DG A OP1 1
ATOM 188 O OP2 . DG A 1 10 ? -10.426 -6.417 -11.030 1.00 60.47 ? 10 DG A OP2 1
ATOM 189 O "O5'" . DG A 1 10 ? -9.920 -4.039 -11.229 1.00 69.77 ? 10 DG A "O5'" 1
ATOM 190 C "C5'" . DG A 1 10 ? -9.410 -2.816 -10.657 1.00 60.52 ? 10 DG A "C5'" 1
ATOM 191 C "C4'" . DG A 1 10 ? -8.247 -2.310 -11.473 1.00 44.80 ? 10 DG A "C4'" 1
ATOM 192 O "O4'" . DG A 1 10 ? -7.086 -3.139 -11.262 1.00 48.31 ? 10 DG A "O4'" 1
ATOM 193 C "C3'" . DG A 1 10 ? -8.479 -2.298 -12.986 1.00 51.66 ? 10 DG A "C3'" 1
ATOM 194 O "O3'" . DG A 1 10 ? -7.980 -1.036 -13.436 1.00 58.77 ? 10 DG A "O3'" 1
ATOM 195 C "C2'" . DG A 1 10 ? -7.609 -3.440 -13.471 1.00 41.47 ? 10 DG A "C2'" 1
ATOM 196 C "C1'" . DG A 1 10 ? -6.465 -3.315 -12.503 1.00 43.87 ? 10 DG A "C1'" 1
ATOM 197 N N9 . DG A 1 10 ? -5.596 -4.482 -12.443 1.00 44.10 ? 10 DG A N9 1
ATOM 198 C C8 . DG A 1 10 ? -5.960 -5.767 -12.760 1.00 43.62 ? 10 DG A C8 1
ATOM 199 N N7 . DG A 1 10 ? -4.956 -6.599 -12.758 1.00 41.24 ? 10 DG A N7 1
ATOM 200 C C5 . DG A 1 10 ? -3.871 -5.833 -12.367 1.00 42.56 ? 10 DG A C5 1
ATOM 201 C C6 . DG A 1 10 ? -2.514 -6.198 -12.189 1.00 48.34 ? 10 DG A C6 1
ATOM 202 O O6 . DG A 1 10 ? -1.997 -7.313 -12.304 1.00 57.03 ? 10 DG A O6 1
ATOM 203 N N1 . DG A 1 10 ? -1.729 -5.101 -11.846 1.00 51.58 ? 10 DG A N1 1
ATOM 204 C C2 . DG A 1 10 ? -2.192 -3.817 -11.688 1.00 45.77 ? 10 DG A C2 1
ATOM 205 N N2 . DG A 1 10 ? -1.274 -2.902 -11.349 1.00 48.94 ? 10 DG A N2 1
ATOM 206 N N3 . DG A 1 10 ? -3.463 -3.463 -11.843 1.00 48.46 ? 10 DG A N3 1
ATOM 207 C C4 . DG A 1 10 ? -4.240 -4.516 -12.189 1.00 41.57 ? 10 DG A C4 1
ATOM 208 P P . DG A 1 11 ? -8.591 -0.252 -14.699 1.00 49.89 ? 11 DG A P 1
ATOM 209 O OP1 . DG A 1 11 ? -10.043 -0.088 -14.512 1.00 47.62 ? 11 DG A OP1 1
ATOM 210 O OP2 . DG A 1 11 ? -8.020 -0.880 -15.920 1.00 50.96 ? 11 DG A OP2 1
ATOM 211 O "O5'" . DG A 1 11 ? -7.947 1.188 -14.484 1.00 57.11 ? 11 DG A "O5'" 1
ATOM 212 C "C5'" . DG A 1 11 ? -8.093 1.863 -13.221 1.00 56.02 ? 11 DG A "C5'" 1
ATOM 213 C "C4'" . DG A 1 11 ? -8.554 3.275 -13.482 1.00 63.20 ? 11 DG A "C4'" 1
ATOM 214 O "O4'" . DG A 1 11 ? -7.516 3.963 -14.208 1.00 53.98 ? 11 DG A "O4'" 1
ATOM 215 C "C3'" . DG A 1 11 ? -9.800 3.389 -14.358 1.00 66.09 ? 11 DG A "C3'" 1
ATOM 216 O "O3'" . DG A 1 11 ? -10.558 4.533 -13.960 1.00 68.81 ? 11 DG A "O3'" 1
ATOM 217 C "C2'" . DG A 1 11 ? -9.239 3.546 -15.765 1.00 54.19 ? 11 DG A "C2'" 1
ATOM 218 C "C1'" . DG A 1 11 ? -7.987 4.345 -15.502 1.00 48.75 ? 11 DG A "C1'" 1
ATOM 219 N N9 . DG A 1 11 ? -6.887 4.146 -16.425 1.00 43.53 ? 11 DG A N9 1
ATOM 220 C C8 . DG A 1 11 ? -6.393 2.963 -16.917 1.00 44.68 ? 11 DG A C8 1
ATOM 221 N N7 . DG A 1 11 ? -5.295 3.116 -17.608 1.00 48.13 ? 11 DG A N7 1
ATOM 222 C C5 . DG A 1 11 ? -5.070 4.485 -17.592 1.00 46.10 ? 11 DG A C5 1
ATOM 223 C C6 . DG A 1 11 ? -4.047 5.262 -18.204 1.00 45.98 ? 11 DG A C6 1
ATOM 224 O O6 . DG A 1 11 ? -3.110 4.886 -18.916 1.00 49.04 ? 11 DG A O6 1
ATOM 225 N N1 . DG A 1 11 ? -4.180 6.611 -17.899 1.00 51.70 ? 11 DG A N1 1
ATOM 226 C C2 . DG A 1 11 ? -5.169 7.147 -17.113 1.00 53.97 ? 11 DG A C2 1
ATOM 227 N N2 . DG A 1 11 ? -5.127 8.471 -16.935 1.00 61.81 ? 11 DG A N2 1
ATOM 228 N N3 . DG A 1 11 ? -6.116 6.435 -16.526 1.00 48.39 ? 11 DG A N3 1
ATOM 229 C C4 . DG A 1 11 ? -6.017 5.125 -16.823 1.00 47.61 ? 11 DG A C4 1
ATOM 230 P P . DA A 1 12 ? -11.896 4.881 -14.739 1.00 79.31 ? 12 DA A P 1
ATOM 231 O OP1 . DA A 1 12 ? -12.945 5.186 -13.718 1.00 73.17 ? 12 DA A OP1 1
ATOM 232 O OP2 . DA A 1 12 ? -12.135 3.817 -15.755 1.00 85.58 ? 12 DA A OP2 1
ATOM 233 O "O5'" . DA A 1 12 ? -11.492 6.162 -15.599 1.00 88.75 ? 12 DA A "O5'" 1
ATOM 234 C "C5'" . DA A 1 12 ? -10.864 7.326 -15.014 1.00 83.97 ? 12 DA A "C5'" 1
ATOM 235 C "C4'" . DA A 1 12 ? -10.653 8.380 -16.078 1.00 77.13 ? 12 DA A "C4'" 1
ATOM 236 O "O4'" . DA A 1 12 ? -9.586 7.955 -16.957 1.00 65.22 ? 12 DA A "O4'" 1
ATOM 237 C "C3'" . DA A 1 12 ? -11.845 8.658 -17.000 1.00 78.96 ? 12 DA A "C3'" 1
ATOM 238 O "O3'" . DA A 1 12 ? -11.700 10.026 -17.419 1.00 90.83 ? 12 DA A "O3'" 1
ATOM 239 C "C2'" . DA A 1 12 ? -11.606 7.711 -18.166 1.00 68.15 ? 12 DA A "C2'" 1
ATOM 240 C "C1'" . DA A 1 12 ? -10.083 7.784 -18.286 1.00 61.39 ? 12 DA A "C1'" 1
ATOM 241 N N9 . DA A 1 12 ? -9.403 6.622 -18.852 1.00 59.46 ? 12 DA A N9 1
ATOM 242 C C8 . DA A 1 12 ? -9.764 5.296 -18.781 1.00 55.42 ? 12 DA A C8 1
ATOM 243 N N7 . DA A 1 12 ? -8.899 4.483 -19.338 1.00 55.59 ? 12 DA A N7 1
ATOM 244 C C5 . DA A 1 12 ? -7.901 5.330 -19.806 1.00 45.83 ? 12 DA A C5 1
ATOM 245 C C6 . DA A 1 12 ? -6.718 5.087 -20.510 1.00 47.74 ? 12 DA A C6 1
ATOM 246 N N6 . DA A 1 12 ? -6.307 3.863 -20.848 1.00 50.44 ? 12 DA A N6 1
ATOM 247 N N1 . DA A 1 12 ? -5.924 6.147 -20.797 1.00 43.26 ? 12 DA A N1 1
ATOM 248 C C2 . DA A 1 12 ? -6.343 7.371 -20.455 1.00 48.27 ? 12 DA A C2 1
ATOM 249 N N3 . DA A 1 12 ? -7.453 7.728 -19.809 1.00 47.18 ? 12 DA A N3 1
ATOM 250 C C4 . DA A 1 12 ? -8.202 6.649 -19.519 1.00 51.18 ? 12 DA A C4 1
ATOM 251 P P . DG A 1 13 ? -12.919 10.860 -18.080 1.00 80.66 ? 13 DG A P 1
ATOM 252 O OP1 . DG A 1 13 ? -13.093 12.117 -17.286 1.00 89.55 ? 13 DG A OP1 1
ATOM 253 O OP2 . DG A 1 13 ? -14.066 9.923 -18.388 1.00 60.81 ? 13 DG A OP2 1
ATOM 254 O "O5'" . DG A 1 13 ? -12.363 11.304 -19.506 1.00 73.35 ? 13 DG A "O5'" 1
ATOM 255 C "C5'" . DG A 1 13 ? -10.955 11.485 -19.805 1.00 73.60 ? 13 DG A "C5'" 1
ATOM 256 C "C4'" . DG A 1 13 ? -10.724 11.193 -21.272 1.00 72.81 ? 13 DG A "C4'" 1
ATOM 257 O "O4'" . DG A 1 13 ? -10.221 9.839 -21.399 1.00 59.41 ? 13 DG A "O4'" 1
ATOM 258 C "C3'" . DG A 1 13 ? -12.013 11.264 -22.107 1.00 70.56 ? 13 DG A "C3'" 1
ATOM 259 O "O3'" . DG A 1 13 ? -12.364 12.581 -22.644 1.00 85.53 ? 13 DG A "O3'" 1
ATOM 260 C "C2'" . DG A 1 13 ? -11.975 10.024 -22.992 1.00 60.11 ? 13 DG A "C2'" 1
ATOM 261 C "C1'" . DG A 1 13 ? -10.727 9.247 -22.572 1.00 57.23 ? 13 DG A "C1'" 1
ATOM 262 N N9 . DG A 1 13 ? -10.918 7.826 -22.311 1.00 55.88 ? 13 DG A N9 1
ATOM 263 C C8 . DG A 1 13 ? -11.994 7.192 -21.735 1.00 62.67 ? 13 DG A C8 1
ATOM 264 N N7 . DG A 1 13 ? -11.859 5.892 -21.688 1.00 49.83 ? 13 DG A N7 1
ATOM 265 C C5 . DG A 1 13 ? -10.619 5.656 -22.270 1.00 58.34 ? 13 DG A C5 1
ATOM 266 C C6 . DG A 1 13 ? -9.920 4.433 -22.500 1.00 60.33 ? 13 DG A C6 1
ATOM 267 O O6 . DG A 1 13 ? -10.274 3.271 -22.233 1.00 60.37 ? 13 DG A O6 1
ATOM 268 N N1 . DG A 1 13 ? -8.709 4.655 -23.147 1.00 42.48 ? 13 DG A N1 1
ATOM 269 C C2 . DG A 1 13 ? -8.208 5.884 -23.486 1.00 47.83 ? 13 DG A C2 1
ATOM 270 N N2 . DG A 1 13 ? -6.991 5.885 -24.037 1.00 44.26 ? 13 DG A N2 1
ATOM 271 N N3 . DG A 1 13 ? -8.837 7.030 -23.267 1.00 40.62 ? 13 DG A N3 1
ATOM 272 C C4 . DG A 1 13 ? -10.026 6.841 -22.657 1.00 47.21 ? 13 DG A C4 1
ATOM 273 P P . DA A 1 14 ? -11.436 13.414 -23.686 1.00 80.05 ? 14 DA A P 1
ATOM 274 O OP1 . DA A 1 14 ? -10.452 12.493 -24.318 1.00 108.35 ? 14 DA A OP1 1
ATOM 275 O OP2 . DA A 1 14 ? -10.930 14.608 -23.004 1.00 58.35 ? 14 DA A OP2 1
ATOM 276 O "O5'" . DA A 1 14 ? -12.468 13.747 -24.848 1.00 82.57 ? 14 DA A "O5'" 1
ATOM 277 C "C5'" . DA A 1 14 ? -13.402 12.753 -25.309 1.00 72.54 ? 14 DA A "C5'" 1
ATOM 278 C "C4'" . DA A 1 14 ? -14.603 13.437 -25.912 1.00 82.01 ? 14 DA A "C4'" 1
ATOM 279 O "O4'" . DA A 1 14 ? -15.020 14.506 -25.031 1.00 79.71 ? 14 DA A "O4'" 1
ATOM 280 C "C3'" . DA A 1 14 ? -14.331 14.130 -27.242 1.00 89.67 ? 14 DA A "C3'" 1
ATOM 281 O "O3'" . DA A 1 14 ? -14.412 13.239 -28.360 1.00 112.07 ? 14 DA A "O3'" 1
ATOM 282 C "C2'" . DA A 1 14 ? -15.426 15.181 -27.281 1.00 82.68 ? 14 DA A "C2'" 1
ATOM 283 C "C1'" . DA A 1 14 ? -15.632 15.535 -25.803 1.00 67.68 ? 14 DA A "C1'" 1
ATOM 284 N N9 . DA A 1 14 ? -15.039 16.822 -25.433 1.00 50.61 ? 14 DA A N9 1
ATOM 285 C C8 . DA A 1 14 ? -13.827 17.140 -24.864 1.00 48.74 ? 14 DA A C8 1
ATOM 286 N N7 . DA A 1 14 ? -13.611 18.434 -24.768 1.00 45.98 ? 14 DA A N7 1
ATOM 287 C C5 . DA A 1 14 ? -14.754 19.005 -25.323 1.00 44.69 ? 14 DA A C5 1
ATOM 288 C C6 . DA A 1 14 ? -15.157 20.347 -25.509 1.00 43.51 ? 14 DA A C6 1
ATOM 289 N N6 . DA A 1 14 ? -14.425 21.400 -25.135 1.00 46.73 ? 14 DA A N6 1
ATOM 290 N N1 . DA A 1 14 ? -16.359 20.568 -26.086 1.00 42.22 ? 14 DA A N1 1
ATOM 291 C C2 . DA A 1 14 ? -17.102 19.510 -26.453 1.00 43.50 ? 14 DA A C2 1
ATOM 292 N N3 . DA A 1 14 ? -16.823 18.208 -26.351 1.00 41.94 ? 14 DA A N3 1
ATOM 293 C C4 . DA A 1 14 ? -15.648 18.023 -25.719 1.00 40.11 ? 14 DA A C4 1
HETATM 294 MG MG . MG B 2 . ? -15.220 14.943 -18.424 1.00 75.18 ? 101 MG A MG 1
HETATM 295 MG MG . MG C 2 . ? -11.824 4.673 -25.712 1.00 69.01 ? 102 MG A MG 1
HETATM 296 O O . HOH D 3 . ? -6.801 -2.675 -16.847 1.00 44.87 ? 201 HOH A O 1
HETATM 297 O O . HOH D 3 . ? -11.844 19.938 -23.943 1.00 55.11 ? 202 HOH A O 1
HETATM 298 O O . HOH D 3 . ? 4.638 -5.996 9.570 1.00 59.15 ? 203 HOH A O 1
HETATM 299 O O . HOH D 3 . ? -4.039 6.484 -22.391 1.00 56.04 ? 204 HOH A O 1
HETATM 300 O O . HOH D 3 . ? -9.166 0.987 -22.146 1.00 53.74 ? 205 HOH A O 1
HETATM 301 O O . HOH D 3 . ? -4.038 -6.993 -0.000 0.50 64.71 ? 206 HOH A O 1
HETATM 302 O O . HOH D 3 . ? -2.389 8.445 -19.229 1.00 61.11 ? 207 HOH A O 1
HETATM 303 O O . HOH D 3 . ? -0.013 1.423 18.576 1.00 58.64 ? 208 HOH A O 1
HETATM 304 O O . HOH D 3 . ? -7.365 -3.913 -3.038 1.00 72.92 ? 209 HOH A O 1
HETATM 305 O O . HOH D 3 . ? 9.317 -8.724 -0.122 1.00 74.40 ? 210 HOH A O 1
HETATM 306 O O . HOH D 3 . ? 7.828 -1.979 8.807 1.00 66.02 ? 211 HOH A O 1
HETATM 307 O O . HOH D 3 . ? -11.005 1.797 -18.476 1.00 67.96 ? 212 HOH A O 1
HETATM 308 O O . HOH D 3 . ? -16.407 13.812 -17.139 1.00 64.61 ? 213 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DA 4 4 4 DA DA A . n
A 1 5 DA 5 5 5 DA DA A . n
A 1 6 DA 6 6 6 DA DA A . n
A 1 7 DT 7 7 7 DT DT A . n
A 1 8 DT 8 8 8 DT DT A . n
A 1 9 DT 9 9 9 DT DT A . n
A 1 10 DG 10 10 10 DG DG A . n
A 1 11 DG 11 11 11 DG DG A . n
A 1 12 DA 12 12 12 DA DA A . n
A 1 13 DG 13 13 13 DG DG A . n
A 1 14 DA 14 14 14 DA DA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG 1 101 1 MG MG A .
C 2 MG 1 102 2 MG MG A .
D 3 HOH 1 201 9 HOH HOH A .
D 3 HOH 2 202 8 HOH HOH A .
D 3 HOH 3 203 16 HOH HOH A .
D 3 HOH 4 204 6 HOH HOH A .
D 3 HOH 5 205 5 HOH HOH A .
D 3 HOH 6 206 14 HOH HOH A .
D 3 HOH 7 207 12 HOH HOH A .
D 3 HOH 8 208 20 HOH HOH A .
D 3 HOH 9 209 13 HOH HOH A .
D 3 HOH 10 210 18 HOH HOH A .
D 3 HOH 11 211 19 HOH HOH A .
D 3 HOH 12 212 21 HOH HOH A .
D 3 HOH 13 213 7 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1520 ?
1 MORE -15 ?
1 'SSA (A^2)' 5950 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 206
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id D
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
_pdbx_struct_conn_angle.id 1
_pdbx_struct_conn_angle.ptnr1_label_atom_id O
_pdbx_struct_conn_angle.ptnr1_label_alt_id ?
_pdbx_struct_conn_angle.ptnr1_label_asym_id D
_pdbx_struct_conn_angle.ptnr1_label_comp_id HOH
_pdbx_struct_conn_angle.ptnr1_label_seq_id .
_pdbx_struct_conn_angle.ptnr1_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr1_auth_asym_id A
_pdbx_struct_conn_angle.ptnr1_auth_comp_id HOH
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 204
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr1_symmetry 5_564
_pdbx_struct_conn_angle.ptnr2_label_atom_id MG
_pdbx_struct_conn_angle.ptnr2_label_alt_id ?
_pdbx_struct_conn_angle.ptnr2_label_asym_id B
_pdbx_struct_conn_angle.ptnr2_label_comp_id MG
_pdbx_struct_conn_angle.ptnr2_label_seq_id .
_pdbx_struct_conn_angle.ptnr2_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr2_auth_asym_id A
_pdbx_struct_conn_angle.ptnr2_auth_comp_id MG
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 101
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr2_symmetry 1_555
_pdbx_struct_conn_angle.ptnr3_label_atom_id O
_pdbx_struct_conn_angle.ptnr3_label_alt_id ?
_pdbx_struct_conn_angle.ptnr3_label_asym_id D
_pdbx_struct_conn_angle.ptnr3_label_comp_id HOH
_pdbx_struct_conn_angle.ptnr3_label_seq_id .
_pdbx_struct_conn_angle.ptnr3_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr3_auth_asym_id A
_pdbx_struct_conn_angle.ptnr3_auth_comp_id HOH
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 213
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr3_symmetry 1_555
_pdbx_struct_conn_angle.value 75.7
_pdbx_struct_conn_angle.value_esd ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-11-11
2 'Structure model' 1 1 2015-12-16
3 'Structure model' 1 2 2016-07-20
4 'Structure model' 1 3 2017-11-22
5 'Structure model' 1 4 2023-09-27
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 4 'Structure model' 'Derived calculations'
4 4 'Structure model' 'Refinement description'
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Database references'
7 5 'Structure model' 'Derived calculations'
8 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' pdbx_struct_oper_list
2 4 'Structure model' software
3 5 'Structure model' chem_comp_atom
4 5 'Structure model' chem_comp_bond
5 5 'Structure model' database_2
6 5 'Structure model' pdbx_initial_refinement_model
7 5 'Structure model' pdbx_struct_conn_angle
8 5 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation'
2 4 'Structure model' '_software.classification'
3 5 'Structure model' '_database_2.pdbx_DOI'
4 5 'Structure model' '_database_2.pdbx_database_accession'
5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'
7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'
9 5 'Structure model' '_struct_conn.pdbx_dist_value'
10 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
11 5 'Structure model' '_struct_conn.ptnr2_symmetry'
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'"
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 DG
_pdbx_validate_rmsd_angle.auth_seq_id_1 1
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'"
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 DG
_pdbx_validate_rmsd_angle.auth_seq_id_2 1
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'"
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 DG
_pdbx_validate_rmsd_angle.auth_seq_id_3 1
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 117.01
_pdbx_validate_rmsd_angle.angle_target_value 109.80
_pdbx_validate_rmsd_angle.angle_deviation 7.21
_pdbx_validate_rmsd_angle.angle_standard_deviation 1.10
_pdbx_validate_rmsd_angle.linker_flag N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DG OP3 O N N 37
DG P P N N 38
DG OP1 O N N 39
DG OP2 O N N 40
DG "O5'" O N N 41
DG "C5'" C N N 42
DG "C4'" C N R 43
DG "O4'" O N N 44
DG "C3'" C N S 45
DG "O3'" O N N 46
DG "C2'" C N N 47
DG "C1'" C N R 48
DG N9 N Y N 49
DG C8 C Y N 50
DG N7 N Y N 51
DG C5 C Y N 52
DG C6 C N N 53
DG O6 O N N 54
DG N1 N N N 55
DG C2 C N N 56
DG N2 N N N 57
DG N3 N N N 58
DG C4 C Y N 59
DG HOP3 H N N 60
DG HOP2 H N N 61
DG "H5'" H N N 62
DG "H5''" H N N 63
DG "H4'" H N N 64
DG "H3'" H N N 65
DG "HO3'" H N N 66
DG "H2'" H N N 67
DG "H2''" H N N 68
DG "H1'" H N N 69
DG H8 H N N 70
DG H1 H N N 71
DG H21 H N N 72
DG H22 H N N 73
DT OP3 O N N 74
DT P P N N 75
DT OP1 O N N 76
DT OP2 O N N 77
DT "O5'" O N N 78
DT "C5'" C N N 79
DT "C4'" C N R 80
DT "O4'" O N N 81
DT "C3'" C N S 82
DT "O3'" O N N 83
DT "C2'" C N N 84
DT "C1'" C N R 85
DT N1 N N N 86
DT C2 C N N 87
DT O2 O N N 88
DT N3 N N N 89
DT C4 C N N 90
DT O4 O N N 91
DT C5 C N N 92
DT C7 C N N 93
DT C6 C N N 94
DT HOP3 H N N 95
DT HOP2 H N N 96
DT "H5'" H N N 97
DT "H5''" H N N 98
DT "H4'" H N N 99
DT "H3'" H N N 100
DT "HO3'" H N N 101
DT "H2'" H N N 102
DT "H2''" H N N 103
DT "H1'" H N N 104
DT H3 H N N 105
DT H71 H N N 106
DT H72 H N N 107
DT H73 H N N 108
DT H6 H N N 109
HOH O O N N 110
HOH H1 H N N 111
HOH H2 H N N 112
MG MG MG N N 113
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DG OP3 P sing N N 39
DG OP3 HOP3 sing N N 40
DG P OP1 doub N N 41
DG P OP2 sing N N 42
DG P "O5'" sing N N 43
DG OP2 HOP2 sing N N 44
DG "O5'" "C5'" sing N N 45
DG "C5'" "C4'" sing N N 46
DG "C5'" "H5'" sing N N 47
DG "C5'" "H5''" sing N N 48
DG "C4'" "O4'" sing N N 49
DG "C4'" "C3'" sing N N 50
DG "C4'" "H4'" sing N N 51
DG "O4'" "C1'" sing N N 52
DG "C3'" "O3'" sing N N 53
DG "C3'" "C2'" sing N N 54
DG "C3'" "H3'" sing N N 55
DG "O3'" "HO3'" sing N N 56
DG "C2'" "C1'" sing N N 57
DG "C2'" "H2'" sing N N 58
DG "C2'" "H2''" sing N N 59
DG "C1'" N9 sing N N 60
DG "C1'" "H1'" sing N N 61
DG N9 C8 sing Y N 62
DG N9 C4 sing Y N 63
DG C8 N7 doub Y N 64
DG C8 H8 sing N N 65
DG N7 C5 sing Y N 66
DG C5 C6 sing N N 67
DG C5 C4 doub Y N 68
DG C6 O6 doub N N 69
DG C6 N1 sing N N 70
DG N1 C2 sing N N 71
DG N1 H1 sing N N 72
DG C2 N2 sing N N 73
DG C2 N3 doub N N 74
DG N2 H21 sing N N 75
DG N2 H22 sing N N 76
DG N3 C4 sing N N 77
DT OP3 P sing N N 78
DT OP3 HOP3 sing N N 79
DT P OP1 doub N N 80
DT P OP2 sing N N 81
DT P "O5'" sing N N 82
DT OP2 HOP2 sing N N 83
DT "O5'" "C5'" sing N N 84
DT "C5'" "C4'" sing N N 85
DT "C5'" "H5'" sing N N 86
DT "C5'" "H5''" sing N N 87
DT "C4'" "O4'" sing N N 88
DT "C4'" "C3'" sing N N 89
DT "C4'" "H4'" sing N N 90
DT "O4'" "C1'" sing N N 91
DT "C3'" "O3'" sing N N 92
DT "C3'" "C2'" sing N N 93
DT "C3'" "H3'" sing N N 94
DT "O3'" "HO3'" sing N N 95
DT "C2'" "C1'" sing N N 96
DT "C2'" "H2'" sing N N 97
DT "C2'" "H2''" sing N N 98
DT "C1'" N1 sing N N 99
DT "C1'" "H1'" sing N N 100
DT N1 C2 sing N N 101
DT N1 C6 sing N N 102
DT C2 O2 doub N N 103
DT C2 N3 sing N N 104
DT N3 C4 sing N N 105
DT N3 H3 sing N N 106
DT C4 O4 doub N N 107
DT C4 C5 sing N N 108
DT C5 C7 sing N N 109
DT C5 C6 doub N N 110
DT C7 H71 sing N N 111
DT C7 H72 sing N N 112
DT C7 H73 sing N N 113
DT C6 H6 sing N N 114
HOH O H1 sing N N 115
HOH O H2 sing N N 116
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
5BZ7 'double helix'
5BZ7 'b-form double helix'
5BZ7 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DG 11 4_555 5.732 -0.466 0.038 30.305 -1.317 -107.957 1 A_DG1:DG11_A A 1 ? A 11 ? 7 4
1 A DG 1 1_555 A DG 11 1_555 5.732 -0.466 0.038 30.305 -1.317 -107.957 2 A_DG1:DG11_A A 1 ? A 11 ? 7 4
1 A DA 3 1_555 A DG 10 4_555 -6.716 -4.403 0.271 -24.748 -5.553 2.595 3 A_DA3:DG10_A A 3 ? A 10 ? 11 9
1 A DA 4 1_555 A DT 9 4_555 -0.149 -0.133 -0.117 3.235 2.832 -1.127 4 A_DA4:DT9_A A 4 ? A 9 ? 20 1
1 A DA 5 1_555 A DT 8 4_555 -0.258 0.046 0.020 14.349 -13.369 2.038 5 A_DA5:DT8_A A 5 ? A 8 ? 20 1
1 A DA 6 1_555 A DT 7 4_555 -0.079 0.079 -0.086 5.158 -17.685 3.029 6 A_DA6:DT7_A A 6 ? A 7 ? 20 1
1 A DT 7 1_555 A DA 6 4_555 0.079 0.079 -0.086 -5.158 -17.684 3.029 7 A_DT7:DA6_A A 7 ? A 6 ? 20 1
1 A DT 8 1_555 A DA 5 4_555 0.258 0.046 0.020 -14.349 -13.369 2.038 8 A_DT8:DA5_A A 8 ? A 5 ? 20 1
1 A DT 9 1_555 A DA 4 4_555 0.149 -0.133 -0.117 -3.235 2.832 -1.127 9 A_DT9:DA4_A A 9 ? A 4 ? 20 1
1 A DG 10 1_555 A DA 3 4_555 6.716 -4.403 0.271 24.748 -5.553 2.595 10 A_DG10:DA3_A A 10 ? A 3 ? 11 9
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DA 3 1_555 A DG 10 4_555 A DA 4 1_555 A DT 9 4_555 -0.845 1.677 2.868 -0.263 3.070 59.642 1.548 0.837 2.947 3.084 0.264
59.714 1 AA_DA3DA4:DT9DG10_AA A 3 ? A 10 ? A 4 ? A 9 ?
1 A DA 4 1_555 A DT 9 4_555 A DA 5 1_555 A DT 8 4_555 -0.613 0.354 3.145 -1.830 3.844 30.098 -0.075 0.813 3.195 7.355 3.501
30.390 2 AA_DA4DA5:DT8DT9_AA A 4 ? A 9 ? A 5 ? A 8 ?
1 A DA 5 1_555 A DT 8 4_555 A DA 6 1_555 A DT 7 4_555 -0.141 -0.110 3.428 -0.575 2.492 39.823 -0.462 0.137 3.417 3.654 0.843
39.902 3 AA_DA5DA6:DT7DT8_AA A 5 ? A 8 ? A 6 ? A 7 ?
1 A DA 6 1_555 A DT 7 4_555 A DT 7 1_555 A DA 6 4_555 0.000 -0.707 3.468 0.000 3.297 33.862 -1.760 0.000 3.386 5.645 0.000
34.017 4 AA_DA6DT7:DA6DT7_AA A 6 ? A 7 ? A 7 ? A 6 ?
1 A DT 7 1_555 A DA 6 4_555 A DT 8 1_555 A DA 5 4_555 0.141 -0.110 3.428 0.575 2.492 39.823 -0.462 -0.137 3.417 3.654 -0.843
39.902 5 AA_DT7DT8:DA5DA6_AA A 7 ? A 6 ? A 8 ? A 5 ?
1 A DT 8 1_555 A DA 5 4_555 A DT 9 1_555 A DA 4 4_555 0.613 0.354 3.145 1.830 3.844 30.098 -0.075 -0.813 3.195 7.355 -3.501
30.390 6 AA_DT8DT9:DA4DA5_AA A 8 ? A 5 ? A 9 ? A 4 ?
1 A DT 9 1_555 A DA 4 4_555 A DG 10 1_555 A DA 3 4_555 0.845 1.677 2.868 0.263 3.070 59.642 1.548 -0.837 2.947 3.084 -0.264
59.714 7 AA_DT9DG10:DA3DA4_AA A 9 ? A 4 ? A 10 ? A 3 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 5BXW
_pdbx_initial_refinement_model.details ?
#