data_4ZNN
#
_entry.id 4ZNN
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4ZNN pdb_00004znn 10.2210/pdb4znn/pdb
WWPDB D_1000209579 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-09-09
2 'Structure model' 1 1 2015-09-23
3 'Structure model' 1 2 2015-10-07
4 'Structure model' 1 3 2016-11-30
5 'Structure model' 1 4 2017-09-06
6 'Structure model' 1 5 2019-12-18
7 'Structure model' 1 6 2024-03-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Experimental preparation'
4 5 'Structure model' 'Author supporting evidence'
5 5 'Structure model' 'Data collection'
6 6 'Structure model' 'Author supporting evidence'
7 7 'Structure model' 'Data collection'
8 7 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' em_image_scans
2 5 'Structure model' pdbx_audit_support
3 6 'Structure model' pdbx_audit_support
4 7 'Structure model' chem_comp_atom
5 7 'Structure model' chem_comp_bond
6 7 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_pdbx_audit_support.funding_organization'
2 5 'Structure model' '_pdbx_audit_support.grant_number'
3 6 'Structure model' '_pdbx_audit_support.funding_organization'
4 7 'Structure model' '_database_2.pdbx_DOI'
5 7 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 4ZNN
_pdbx_database_status.recvd_initial_deposition_date 2015-05-05
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
PDB 'Another segment from alpha-synuclein' 4RIL unspecified
EMDB . EMD-3001 'associated EM volume'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Rodriguez, J.A.' 1 ?
'Ivanova, M.' 2 ?
'Sawaya, M.R.' 3 ?
'Cascio, D.' 4 ?
'Reyes, F.' 5 ?
'Shi, D.' 6 ?
'Johnson, L.' 7 ?
'Guenther, E.' 8 ?
'Sangwan, S.' 9 ?
'Hattne, J.' 10 ?
'Nannenga, B.' 11 ?
'Brewster, A.S.' 12 ?
'Messerschmidt, M.' 13 ?
'Boutet, S.' 14 ?
'Sauter, N.K.' 15 ?
'Gonen, T.' 16 ?
'Eisenberg, D.S.' 17 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country UK
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Nature
_citation.journal_id_ASTM NATUAS
_citation.journal_id_CSD 0006
_citation.journal_id_ISSN 1476-4687
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 525
_citation.language ?
_citation.page_first 486
_citation.page_last 490
_citation.title 'Structure of the toxic core of alpha-synuclein from invisible crystals.'
_citation.year 2015
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1038/nature15368
_citation.pdbx_database_id_PubMed 26352473
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Rodriguez, J.A.' 1 ?
primary 'Ivanova, M.I.' 2 ?
primary 'Sawaya, M.R.' 3 ?
primary 'Cascio, D.' 4 ?
primary 'Reyes, F.E.' 5 ?
primary 'Shi, D.' 6 ?
primary 'Sangwan, S.' 7 ?
primary 'Guenther, E.L.' 8 ?
primary 'Johnson, L.M.' 9 ?
primary 'Zhang, M.' 10 ?
primary 'Jiang, L.' 11 ?
primary 'Arbing, M.A.' 12 ?
primary 'Nannenga, B.L.' 13 ?
primary 'Hattne, J.' 14 ?
primary 'Whitelegge, J.' 15 ?
primary 'Brewster, A.S.' 16 ?
primary 'Messerschmidt, M.' 17 ?
primary 'Boutet, S.' 18 ?
primary 'Sauter, N.K.' 19 ?
primary 'Gonen, T.' 20 ?
primary 'Eisenberg, D.S.' 21 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn Alpha-synuclein 940.074 1 ? A53T ? ?
2 water nat water 18.015 4 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Non-A beta component of AD amyloid,Non-A4 component of amyloid precursor,NACP'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GVVHGVTTVA
_entity_poly.pdbx_seq_one_letter_code_can GVVHGVTTVA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 VAL n
1 3 VAL n
1 4 HIS n
1 5 GLY n
1 6 VAL n
1 7 THR n
1 8 THR n
1 9 VAL n
1 10 ALA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 10
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name Human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details 'Synthetic peptide GVVHGVTTVA corresponding to segment 47-56 of human alpha-synuclein'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 47 47 GLY GLY A . n
A 1 2 VAL 2 48 48 VAL VAL A . n
A 1 3 VAL 3 49 49 VAL VAL A . n
A 1 4 HIS 4 50 50 HIS HIS A . n
A 1 5 GLY 5 51 51 GLY GLY A . n
A 1 6 VAL 6 52 52 VAL VAL A . n
A 1 7 THR 7 53 53 THR THR A . n
A 1 8 THR 8 54 54 THR THR A . n
A 1 9 VAL 9 55 55 VAL VAL A . n
A 1 10 ALA 10 56 56 ALA ALA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 2 HOH HOH A .
B 2 HOH 3 103 3 HOH HOH A .
B 2 HOH 4 104 4 HOH HOH A .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1
? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 2
? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 3
? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5
? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 94.330
_cell.angle_beta_esd ?
_cell.angle_gamma 90.000
_cell.angle_gamma_esd ?
_cell.entry_id 4ZNN
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 17.930
_cell.length_a_esd ?
_cell.length_b 4.710
_cell.length_b_esd ?
_cell.length_c 33.030
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 2
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 4ZNN
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 4
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 4ZNN
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'ELECTRON CRYSTALLOGRAPHY'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'BATCH MODE'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 310
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;1 mg of synthetic peptide GVVHGVTTVA was dissolved in 200 microliters of 50 mM phosphate buffer pH 7.0 and 0.1% w/v DMSO and shaken overnight in an orbital mixing plate
;
_exptl_crystal_grow.pdbx_pH_range 7.0
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CMOS
_diffrn_detector.diffrn_id 1
_diffrn_detector.type ?
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2015-04-20
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type electron
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.0251
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source 'ELECTRON MICROSCOPE'
_diffrn_source.target ?
_diffrn_source.type OTHER
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.0251
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_synchrotron_site ?
#
_reflns.B_iso_Wilson_estimate 22.483
_reflns.entry_id 4ZNN
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.410
_reflns.d_resolution_low 16.5
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 1120
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3.000
_reflns.percent_possible_obs 86.900
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs 0.967
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 3.7
_reflns.pdbx_Rmerge_I_obs 0.236
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 4.620
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 0.831
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all 0.264
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all 4110
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.410 1.480 ? 1.080 ? 323 171 ? 100 58.500 ? ? 0.628 ? 0.780 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.895 ? 0 1 1 ? ?
1.480 1.560 ? 2.170 ? 523 175 ? 140 80.000 ? ? 0.664 ? 0.503 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.572 ? 0 2 1 ? ?
1.560 1.650 ? 2.370 ? 417 137 ? 125 91.200 ? ? 0.824 ? 0.417 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.480 ? 0 3 1 ? ?
1.650 1.770 ? 2.330 ? 375 121 ? 116 95.900 ? ? 0.826 ? 0.417 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.496 ? 0 4 1 ? ?
1.770 1.910 ? 3.780 ? 443 124 ? 116 93.500 ? ? 0.937 ? 0.290 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.334 ? 0 5 1 ? ?
1.910 2.090 ? 5.190 ? 530 133 ? 126 94.700 ? ? 0.975 ? 0.262 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.298 ? 0 6 1 ? ?
2.090 2.340 ? 6.270 ? 552 129 ? 122 94.600 ? ? 0.941 ? 0.269 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.303 ? 0 7 1 ? ?
2.340 2.700 ? 6.330 ? 263 85 ? 78 91.800 ? ? 0.969 ? 0.203 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.237 ? 0 8 1 ? ?
2.700 3.310 ? 8.020 ? 263 88 ? 81 92.000 ? ? 0.991 ? 0.144 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.170 ? 0 9 1 ? ?
3.310 4.680 ? 11.770 ? 337 85 ? 80 94.100 ? ? 0.949 ? 0.256 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.279 ? 0 10 1 ? ?
4.680 16.5 ? 7.180 ? 84 41 ? 36 87.800 ? ? 0.987 ? 0.078 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.100 ? 0 11 1 ? ?
#
_refine.aniso_B[1][1] 1.0800
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0100
_refine.aniso_B[2][2] -1.1300
_refine.aniso_B[2][3] -0.0000
_refine.aniso_B[3][3] 0.0500
_refine.B_iso_max 50.340
_refine.B_iso_mean 18.3710
_refine.B_iso_min 11.230
_refine.correlation_coeff_Fo_to_Fc 0.9530
_refine.correlation_coeff_Fo_to_Fc_free 0.9580
_refine.details
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 4ZNN
_refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.4100
_refine.ls_d_res_low 16.4700
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 1006
_refine.ls_number_reflns_R_free 112
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 86.7300
_refine.ls_percent_reflns_R_free 10.0000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2396
_refine.ls_R_factor_R_free 0.2817
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2347
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free 0.2879
_refine.ls_wR_factor_R_work 0.2427
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details MASK
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_starting_model 'Ideal model'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.1120
_refine.pdbx_overall_ESU_R_Free 0.1140
_refine.pdbx_solvent_vdw_probe_radii 1.2000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 3.4910
_refine.overall_SU_ML 0.1110
_refine.overall_SU_R_Cruickshank_DPI 0.1115
_refine.overall_SU_R_free 0.1137
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set 0.6203
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_hist.d_res_high 1.4100
_refine_hist.d_res_low 16.4700
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 4
_refine_hist.number_atoms_total 70
_refine_hist.pdbx_number_residues_total 10
_refine_hist.pdbx_B_iso_mean_solvent 24.58
_refine_hist.pdbx_number_atoms_protein 66
_refine_hist.pdbx_number_atoms_nucleic_acid 0
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON CRYSTALLOGRAPHY' ? 0.020 0.019 66 ? r_bond_refined_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.154 0.020 69 ? r_bond_other_d ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 1.977 1.905 91 ? r_angle_refined_deg ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 3.442 3.000 155 ? r_angle_other_deg ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 5.506 5.000 9 ? r_dihedral_angle_1_deg ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 75.764 20.000 1 ? r_dihedral_angle_2_deg ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 6.335 15.000 7 ? r_dihedral_angle_3_deg ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.065 0.200 14 ? r_chiral_restr ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.006 0.020 73 ? r_gen_planes_refined ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 0.001 0.020 13 ? r_gen_planes_other ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 3.934 1.542 39 ? r_mcbond_it ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 1.925 1.468 38 ? r_mcbond_other ? ?
'ELECTRON CRYSTALLOGRAPHY' ? 5.296 2.279 42 ? r_mcangle_it ? ?
#
_refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY'
_refine_ls_shell.d_res_high 1.4090
_refine_ls_shell.d_res_low 1.5740
_refine_ls_shell.number_reflns_all 265
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 26
_refine_ls_shell.number_reflns_R_work 239
_refine_ls_shell.percent_reflns_obs 70.6700
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.3290
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.3360
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 4ZNN
_struct.title
;MicroED structure of the segment, GVVHGVTTVA, from the A53T familial mutant of Parkinson's disease protein, alpha-synuclein residues 47-56
;
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag ?
#
_struct_keywords.entry_id 4ZNN
_struct_keywords.text
;Amyloid, alpha-synuclein, Parkinson's Disease, Toxic Core, NACore, LIPID BINDING PROTEIN
;
_struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code SYUA_HUMAN
_struct_ref.pdbx_db_accession P37840
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code GVVHGVATVA
_struct_ref.pdbx_align_begin 47
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4ZNN
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 10
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P37840
_struct_ref_seq.db_align_beg 47
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 56
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 47
_struct_ref_seq.pdbx_auth_seq_align_end 56
#
_struct_ref_seq_dif.align_id 1
_struct_ref_seq_dif.pdbx_pdb_id_code 4ZNN
_struct_ref_seq_dif.mon_id THR
_struct_ref_seq_dif.pdbx_pdb_strand_id A
_struct_ref_seq_dif.seq_num 7
_struct_ref_seq_dif.pdbx_pdb_ins_code ?
_struct_ref_seq_dif.pdbx_seq_db_name UNP
_struct_ref_seq_dif.pdbx_seq_db_accession_code P37840
_struct_ref_seq_dif.db_mon_id ALA
_struct_ref_seq_dif.pdbx_seq_db_seq_num 53
_struct_ref_seq_dif.details 'engineered mutation'
_struct_ref_seq_dif.pdbx_auth_seq_num 53
_struct_ref_seq_dif.pdbx_ordinal 1
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details decameric
_pdbx_struct_assembly.oligomeric_count 10
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B
1 2 A,B
1 3 A,B
1 4 A,B
1 5 A,B
1 6 A,B
1 7 A,B
1 8 A,B
1 9 A,B
1 10 A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.7100000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.4200000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_585 x,y+3,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 14.1300000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_595 x,y+4,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 18.8400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 2_556 -x,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.4937927927 0.0000000000
1.0000000000 0.0000000000 2.3550000000 0.0000000000 0.0000000000 -1.0000000000 32.9357237283
7 'crystal symmetry operation' 2_566 -x,y+3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.4937927927 0.0000000000
1.0000000000 0.0000000000 7.0650000000 0.0000000000 0.0000000000 -1.0000000000 32.9357237283
8 'crystal symmetry operation' 2_576 -x,y+5/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.4937927927 0.0000000000
1.0000000000 0.0000000000 11.7750000000 0.0000000000 0.0000000000 -1.0000000000 32.9357237283
9 'crystal symmetry operation' 2_586 -x,y+7/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.4937927927 0.0000000000
1.0000000000 0.0000000000 16.4850000000 0.0000000000 0.0000000000 -1.0000000000 32.9357237283
10 'crystal symmetry operation' 2_596 -x,y+9/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 -2.4937927927 0.0000000000
1.0000000000 0.0000000000 21.1950000000 0.0000000000 0.0000000000 -1.0000000000 32.9357237283
#
_pdbx_phasing_MR.entry_id 4ZNN
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation ?
_pdbx_phasing_MR.d_res_low_rotation ?
_pdbx_phasing_MR.d_res_high_translation ?
_pdbx_phasing_MR.d_res_low_translation ?
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
_em_entity_assembly.details ?
_em_entity_assembly.entity_id_list 1
_em_entity_assembly.id 1
_em_entity_assembly.name 'Human alpha-synuclein'
_em_entity_assembly.oligomeric_details ?
_em_entity_assembly.parent_id 0
_em_entity_assembly.source 'MULTIPLE SOURCES'
_em_entity_assembly.synonym ?
_em_entity_assembly.type COMPLEX
#
_em_imaging.id 1
_em_imaging.entry_id 4ZNN
_em_imaging.microscope_model 'FEI TECNAI F20'
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.nominal_defocus_min ?
_em_imaging.nominal_defocus_max ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.nominal_cs ?
_em_imaging.mode DIFFRACTION
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.nominal_magnification ?
_em_imaging.calibrated_magnification ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.accelerating_voltage 200
_em_imaging.details ?
_em_imaging.specimen_holder_type ?
_em_imaging.specimen_holder_model ?
_em_imaging.specimen_id 1
_em_imaging.calibrated_defocus_max ?
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.cryogen NITROGEN
_em_imaging.residual_tilt ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.citation_id ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
#
_em_experiment.aggregation_state '3D ARRAY'
_em_experiment.entity_assembly_id 1
_em_experiment.entry_id 4ZNN
_em_experiment.id 1
_em_experiment.reconstruction_method CRYSTALLOGRAPHY
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLY N N N N 14
GLY CA C N N 15
GLY C C N N 16
GLY O O N N 17
GLY OXT O N N 18
GLY H H N N 19
GLY H2 H N N 20
GLY HA2 H N N 21
GLY HA3 H N N 22
GLY HXT H N N 23
HIS N N N N 24
HIS CA C N S 25
HIS C C N N 26
HIS O O N N 27
HIS CB C N N 28
HIS CG C Y N 29
HIS ND1 N Y N 30
HIS CD2 C Y N 31
HIS CE1 C Y N 32
HIS NE2 N Y N 33
HIS OXT O N N 34
HIS H H N N 35
HIS H2 H N N 36
HIS HA H N N 37
HIS HB2 H N N 38
HIS HB3 H N N 39
HIS HD1 H N N 40
HIS HD2 H N N 41
HIS HE1 H N N 42
HIS HE2 H N N 43
HIS HXT H N N 44
HOH O O N N 45
HOH H1 H N N 46
HOH H2 H N N 47
THR N N N N 48
THR CA C N S 49
THR C C N N 50
THR O O N N 51
THR CB C N R 52
THR OG1 O N N 53
THR CG2 C N N 54
THR OXT O N N 55
THR H H N N 56
THR H2 H N N 57
THR HA H N N 58
THR HB H N N 59
THR HG1 H N N 60
THR HG21 H N N 61
THR HG22 H N N 62
THR HG23 H N N 63
THR HXT H N N 64
VAL N N N N 65
VAL CA C N S 66
VAL C C N N 67
VAL O O N N 68
VAL CB C N N 69
VAL CG1 C N N 70
VAL CG2 C N N 71
VAL OXT O N N 72
VAL H H N N 73
VAL H2 H N N 74
VAL HA H N N 75
VAL HB H N N 76
VAL HG11 H N N 77
VAL HG12 H N N 78
VAL HG13 H N N 79
VAL HG21 H N N 80
VAL HG22 H N N 81
VAL HG23 H N N 82
VAL HXT H N N 83
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLY N CA sing N N 13
GLY N H sing N N 14
GLY N H2 sing N N 15
GLY CA C sing N N 16
GLY CA HA2 sing N N 17
GLY CA HA3 sing N N 18
GLY C O doub N N 19
GLY C OXT sing N N 20
GLY OXT HXT sing N N 21
HIS N CA sing N N 22
HIS N H sing N N 23
HIS N H2 sing N N 24
HIS CA C sing N N 25
HIS CA CB sing N N 26
HIS CA HA sing N N 27
HIS C O doub N N 28
HIS C OXT sing N N 29
HIS CB CG sing N N 30
HIS CB HB2 sing N N 31
HIS CB HB3 sing N N 32
HIS CG ND1 sing Y N 33
HIS CG CD2 doub Y N 34
HIS ND1 CE1 doub Y N 35
HIS ND1 HD1 sing N N 36
HIS CD2 NE2 sing Y N 37
HIS CD2 HD2 sing N N 38
HIS CE1 NE2 sing Y N 39
HIS CE1 HE1 sing N N 40
HIS NE2 HE2 sing N N 41
HIS OXT HXT sing N N 42
HOH O H1 sing N N 43
HOH O H2 sing N N 44
THR N CA sing N N 45
THR N H sing N N 46
THR N H2 sing N N 47
THR CA C sing N N 48
THR CA CB sing N N 49
THR CA HA sing N N 50
THR C O doub N N 51
THR C OXT sing N N 52
THR CB OG1 sing N N 53
THR CB CG2 sing N N 54
THR CB HB sing N N 55
THR OG1 HG1 sing N N 56
THR CG2 HG21 sing N N 57
THR CG2 HG22 sing N N 58
THR CG2 HG23 sing N N 59
THR OXT HXT sing N N 60
VAL N CA sing N N 61
VAL N H sing N N 62
VAL N H2 sing N N 63
VAL CA C sing N N 64
VAL CA CB sing N N 65
VAL CA HA sing N N 66
VAL C O doub N N 67
VAL C OXT sing N N 68
VAL CB CG1 sing N N 69
VAL CB CG2 sing N N 70
VAL CB HB sing N N 71
VAL CG1 HG11 sing N N 72
VAL CG1 HG12 sing N N 73
VAL CG1 HG13 sing N N 74
VAL CG2 HG21 sing N N 75
VAL CG2 HG22 sing N N 76
VAL CG2 HG23 sing N N 77
VAL OXT HXT sing N N 78
#
_em_image_recording.average_exposure_time ?
_em_image_recording.avg_electron_dose_per_image ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model ?
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
_em_specimen.concentration ?
_em_specimen.details crystal
_em_specimen.embedding_applied NO
_em_specimen.experiment_id 1
_em_specimen.id 1
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_audit_support.funding_organization
_pdbx_audit_support.country
_pdbx_audit_support.grant_number
_pdbx_audit_support.ordinal
'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 1R01-AG029430 1
'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' AG016570 2
#
_atom_sites.entry_id 4ZNN
_atom_sites.fract_transf_matrix[1][1] 0.055772
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.004219
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.212314
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.030362
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? -6.815 -0.668 1.607 1.00 19.60 ? 47 GLY A N 1
ATOM 2 C CA . GLY A 1 1 ? -5.714 0.002 2.373 1.00 18.55 ? 47 GLY A CA 1
ATOM 3 C C . GLY A 1 1 ? -4.357 -0.673 2.588 1.00 15.73 ? 47 GLY A C 1
ATOM 4 O O . GLY A 1 1 ? -4.212 -1.870 2.492 1.00 15.28 ? 47 GLY A O 1
ATOM 5 N N . VAL A 1 2 ? -3.381 0.125 2.953 1.00 16.06 ? 48 VAL A N 1
ATOM 6 C CA . VAL A 1 2 ? -2.062 -0.390 3.274 1.00 17.19 ? 48 VAL A CA 1
ATOM 7 C C . VAL A 1 2 ? -1.636 0.175 4.600 1.00 15.56 ? 48 VAL A C 1
ATOM 8 O O . VAL A 1 2 ? -1.744 1.356 4.862 1.00 16.09 ? 48 VAL A O 1
ATOM 9 C CB . VAL A 1 2 ? -0.993 -0.045 2.197 1.00 16.98 ? 48 VAL A CB 1
ATOM 10 C CG1 . VAL A 1 2 ? 0.390 -0.488 2.640 1.00 18.97 ? 48 VAL A CG1 1
ATOM 11 C CG2 . VAL A 1 2 ? -1.378 -0.662 0.897 1.00 21.79 ? 48 VAL A CG2 1
ATOM 12 N N . VAL A 1 3 ? -1.095 -0.700 5.415 1.00 16.25 ? 49 VAL A N 1
ATOM 13 C CA . VAL A 1 3 ? -0.572 -0.311 6.669 1.00 17.10 ? 49 VAL A CA 1
ATOM 14 C C . VAL A 1 3 ? 0.840 -0.854 6.792 1.00 13.92 ? 49 VAL A C 1
ATOM 15 O O . VAL A 1 3 ? 1.027 -2.022 6.720 1.00 14.77 ? 49 VAL A O 1
ATOM 16 C CB . VAL A 1 3 ? -1.411 -0.913 7.797 1.00 18.21 ? 49 VAL A CB 1
ATOM 17 C CG1 . VAL A 1 3 ? -0.727 -0.645 9.123 1.00 24.67 ? 49 VAL A CG1 1
ATOM 18 C CG2 . VAL A 1 3 ? -2.800 -0.349 7.789 1.00 21.98 ? 49 VAL A CG2 1
ATOM 19 N N . HIS A 1 4 ? 1.810 0.002 7.023 1.00 14.97 ? 50 HIS A N 1
ATOM 20 C CA . HIS A 1 4 ? 3.191 -0.429 7.101 1.00 14.81 ? 50 HIS A CA 1
ATOM 21 C C . HIS A 1 4 ? 3.911 0.258 8.229 1.00 12.78 ? 50 HIS A C 1
ATOM 22 O O . HIS A 1 4 ? 4.064 1.478 8.228 1.00 14.27 ? 50 HIS A O 1
ATOM 23 C CB . HIS A 1 4 ? 3.871 -0.103 5.748 1.00 17.54 ? 50 HIS A CB 1
ATOM 24 C CG . HIS A 1 4 ? 5.247 -0.643 5.581 1.00 20.10 ? 50 HIS A CG 1
ATOM 25 N ND1 . HIS A 1 4 ? 5.861 -0.689 4.353 1.00 31.24 ? 50 HIS A ND1 1
ATOM 26 C CD2 . HIS A 1 4 ? 6.108 -1.197 6.448 1.00 23.34 ? 50 HIS A CD2 1
ATOM 27 C CE1 . HIS A 1 4 ? 7.059 -1.227 4.482 1.00 31.67 ? 50 HIS A CE1 1
ATOM 28 N NE2 . HIS A 1 4 ? 7.239 -1.523 5.751 1.00 27.12 ? 50 HIS A NE2 1
ATOM 29 N N . GLY A 1 5 ? 4.364 -0.527 9.189 1.00 13.20 ? 51 GLY A N 1
ATOM 30 C CA . GLY A 1 5 ? 5.067 0.020 10.326 1.00 11.38 ? 51 GLY A CA 1
ATOM 31 C C . GLY A 1 5 ? 4.271 0.817 11.296 1.00 11.23 ? 51 GLY A C 1
ATOM 32 O O . GLY A 1 5 ? 4.359 2.033 11.367 1.00 14.14 ? 51 GLY A O 1
ATOM 33 N N . VAL A 1 6 ? 3.492 0.104 12.073 1.00 13.14 ? 52 VAL A N 1
ATOM 34 C CA . VAL A 1 6 ? 2.585 0.677 13.085 1.00 12.89 ? 52 VAL A CA 1
ATOM 35 C C . VAL A 1 6 ? 3.006 0.047 14.361 1.00 12.85 ? 52 VAL A C 1
ATOM 36 O O . VAL A 1 6 ? 2.958 -1.169 14.515 1.00 14.15 ? 52 VAL A O 1
ATOM 37 C CB . VAL A 1 6 ? 1.127 0.330 12.827 1.00 15.29 ? 52 VAL A CB 1
ATOM 38 C CG1 . VAL A 1 6 ? 0.248 0.675 14.038 1.00 16.63 ? 52 VAL A CG1 1
ATOM 39 C CG2 . VAL A 1 6 ? 0.674 1.047 11.596 1.00 16.11 ? 52 VAL A CG2 1
ATOM 40 N N . THR A 1 7 ? 3.481 0.887 15.262 1.00 14.70 ? 53 THR A N 1
ATOM 41 C CA . THR A 1 7 ? 4.163 0.392 16.442 1.00 16.60 ? 53 THR A CA 1
ATOM 42 C C . THR A 1 7 ? 3.424 0.965 17.631 1.00 12.84 ? 53 THR A C 1
ATOM 43 O O . THR A 1 7 ? 3.136 2.110 17.612 1.00 13.55 ? 53 THR A O 1
ATOM 44 C CB . THR A 1 7 ? 5.688 0.750 16.389 1.00 19.42 ? 53 THR A CB 1
ATOM 45 O OG1 . THR A 1 7 ? 6.264 0.130 15.236 1.00 17.84 ? 53 THR A OG1 1
ATOM 46 C CG2 . THR A 1 7 ? 6.420 0.210 17.569 1.00 22.98 ? 53 THR A CG2 1
ATOM 47 N N . THR A 1 8 ? 3.173 0.129 18.647 1.00 13.49 ? 54 THR A N 1
ATOM 48 C CA . THR A 1 8 ? 2.559 0.516 19.903 1.00 12.98 ? 54 THR A CA 1
ATOM 49 C C . THR A 1 8 ? 3.350 -0.122 21.014 1.00 12.94 ? 54 THR A C 1
ATOM 50 O O . THR A 1 8 ? 3.366 -1.339 21.140 1.00 17.14 ? 54 THR A O 1
ATOM 51 C CB . THR A 1 8 ? 1.138 -0.021 19.983 1.00 18.49 ? 54 THR A CB 1
ATOM 52 O OG1 . THR A 1 8 ? 0.393 0.394 18.824 1.00 23.95 ? 54 THR A OG1 1
ATOM 53 C CG2 . THR A 1 8 ? 0.486 0.501 21.167 1.00 24.15 ? 54 THR A CG2 1
ATOM 54 N N . VAL A 1 9 ? 4.067 0.688 21.768 1.00 13.39 ? 55 VAL A N 1
ATOM 55 C CA . VAL A 1 9 ? 4.888 0.205 22.851 1.00 13.49 ? 55 VAL A CA 1
ATOM 56 C C . VAL A 1 9 ? 4.350 0.769 24.174 1.00 14.87 ? 55 VAL A C 1
ATOM 57 O O . VAL A 1 9 ? 4.161 1.981 24.269 1.00 12.81 ? 55 VAL A O 1
ATOM 58 C CB . VAL A 1 9 ? 6.362 0.614 22.652 1.00 15.66 ? 55 VAL A CB 1
ATOM 59 C CG1 . VAL A 1 9 ? 7.152 0.297 23.874 1.00 17.11 ? 55 VAL A CG1 1
ATOM 60 C CG2 . VAL A 1 9 ? 6.953 -0.121 21.455 1.00 18.23 ? 55 VAL A CG2 1
ATOM 61 N N . ALA A 1 10 ? 4.065 -0.120 25.151 1.00 15.89 ? 56 ALA A N 1
ATOM 62 C CA . ALA A 1 10 ? 3.720 0.313 26.515 1.00 22.36 ? 56 ALA A CA 1
ATOM 63 C C . ALA A 1 10 ? 4.941 0.140 27.420 1.00 30.33 ? 56 ALA A C 1
ATOM 64 O O . ALA A 1 10 ? 5.714 -0.809 27.287 1.00 50.34 ? 56 ALA A O 1
ATOM 65 C CB . ALA A 1 10 ? 2.499 -0.422 27.062 1.00 18.64 ? 56 ALA A CB 1
ATOM 66 O OXT . ALA A 1 10 ? 5.250 0.955 28.294 1.00 45.80 ? 56 ALA A OXT 1
HETATM 67 O O . HOH B 2 . ? 5.798 2.348 13.663 1.00 16.49 ? 101 HOH A O 1
HETATM 68 O O . HOH B 2 . ? 0.282 -1.835 17.069 1.00 19.45 ? 102 HOH A O 1
HETATM 69 O O . HOH B 2 . ? 3.490 -2.329 2.715 1.00 23.99 ? 103 HOH A O 1
HETATM 70 O O . HOH B 2 . ? 4.229 0.250 1.542 1.00 38.40 ? 104 HOH A O 1
#