HEADER DNA/RNA 29-JUL-14 4U6M
TITLE CRYSTAL STRUCTURE OF DNA/RNA DUPLEX OBTAINED IN THE PRESENCE OF
TITLE 2 SPERMINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3');
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3');
COMPND 7 CHAIN: B;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 4 ORGANISM_TAXID: 32630;
SOURCE 5 MOL_ID: 2;
SOURCE 6 SYNTHETIC: YES;
SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 8 ORGANISM_TAXID: 32630
KEYWDS DNA/RNA HYBRID DUPLEX, ANTISENSE, DNA-RNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.KONDO,Y.NOMURA,Y.KITAHARA,S.OBIKA,H.TORIGOE
REVDAT 4 08-NOV-23 4U6M 1 REMARK
REVDAT 3 06-JUL-22 4U6M 1 JRNL
REVDAT 2 29-JAN-20 4U6M 1 REMARK
REVDAT 1 19-AUG-15 4U6M 0
JRNL AUTH J.KONDO,Y.NOMURA,Y.KITAHARA,S.OBIKA,H.TORIGOE
JRNL TITL THE CRYSTAL STRUCTURE OF A 2',4'-BNA(NC)[N-ME]-MODIFIED
JRNL TITL 2 ANTISENSE GAPMER IN COMPLEX WITH THE TARGET RNA.
JRNL REF CHEM.COMMUN.(CAMB.) V. 52 2354 2016
JRNL REFN ESSN 1364-548X
JRNL PMID 26731288
JRNL DOI 10.1039/C5CC08300A
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : CNS
REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-
REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,
REMARK 3 : READ,RICE,SIMONSON,WARREN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.52
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL
REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL
REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 5020
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING SET) : 0.207
REMARK 3 FREE R VALUE : 0.233
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400
REMARK 3 FREE R VALUE TEST SET COUNT : 271
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 470
REMARK 3 BIN R VALUE (WORKING SET) : 0.2823
REMARK 3 BIN FREE R VALUE : 0.3509
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 28
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 0
REMARK 3 NUCLEIC ACID ATOMS : 374
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 97
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.55
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.83600
REMARK 3 B22 (A**2) : 0.83600
REMARK 3 B33 (A**2) : -1.67200
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM SIGMAA (A) : NULL
REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL
REMARK 3
REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL
REMARK 3 ESD FROM C-V SIGMAA (A) : NULL
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.006
REMARK 3 BOND ANGLES (DEGREES) : NULL
REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL
REMARK 3 IMPROPER ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL MODEL : NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA
REMARK 3 MAIN-CHAIN BOND (A**2) : 0.000 ; 1.500
REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.000 ; 2.000
REMARK 3 SIDE-CHAIN BOND (A**2) : 1.408 ; 2.000
REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.039 ; 2.500
REMARK 3
REMARK 3 BULK SOLVENT MODELING.
REMARK 3 METHOD USED : NULL
REMARK 3 KSOL : NULL
REMARK 3 BSOL : 94.05
REMARK 3
REMARK 3 NCS MODEL : NULL
REMARK 3
REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT
REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL
REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL
REMARK 3
REMARK 3 PARAMETER FILE 1 : NCO_XPLOR.PARAM
REMARK 3 PARAMETER FILE 2 : DNA-RNA_201312.PARAM
REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM
REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM
REMARK 3 PARAMETER FILE 5 : NULL
REMARK 3 TOPOLOGY FILE 1 : NULL
REMARK 3 TOPOLOGY FILE 2 : NULL
REMARK 3 TOPOLOGY FILE 3 : NULL
REMARK 3 TOPOLOGY FILE 4 : NULL
REMARK 3 TOPOLOGY FILE 5 : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4U6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-14.
REMARK 100 THE DEPOSITION ID IS D_1000202903.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-OCT-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : BL-5A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR
REMARK 200 DATA SCALING SOFTWARE : D*TREK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5022
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 42.520
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 10.17
REMARK 200 R MERGE (I) : 0.04000
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 23.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8
REMARK 200 DATA REDUNDANCY IN SHELL : 10.25
REMARK 200 R MERGE FOR SHELL (I) : 0.35800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 5.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX, PHASER
REMARK 200 STARTING MODEL: 4U6L
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 59.66
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NA CACODYLATE, SPERMINE
REMARK 280 TETRAHYDROCHLORIDE, PH 7.0, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.33000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.66000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.99500
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.32500
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.66500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 3360 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OP2 DT B 2 O HOH B 129 1.85
REMARK 500 O HOH A 109 O HOH A 120 1.97
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 A A 2 P A A 2 OP1 0.111
REMARK 500 A A 2 P A A 2 OP2 0.116
REMARK 500 A A 3 P A A 3 OP1 0.106
REMARK 500 A A 3 P A A 3 OP2 0.121
REMARK 500 G A 4 P G A 4 OP1 0.116
REMARK 500 G A 4 P G A 4 OP2 0.122
REMARK 500 A A 5 P A A 5 OP1 0.118
REMARK 500 A A 5 P A A 5 OP2 0.126
REMARK 500 A A 6 P A A 6 OP1 0.115
REMARK 500 A A 6 P A A 6 OP2 0.124
REMARK 500 G A 7 P G A 7 OP1 0.116
REMARK 500 G A 7 P G A 7 OP2 0.118
REMARK 500 A A 8 P A A 8 OP1 0.113
REMARK 500 A A 8 P A A 8 OP2 0.106
REMARK 500 G A 9 P G A 9 OP2 0.113
REMARK 500 DT B 2 P DT B 2 OP1 0.119
REMARK 500 DT B 2 P DT B 2 OP2 0.129
REMARK 500 DC B 3 P DC B 3 OP1 0.114
REMARK 500 DC B 3 P DC B 3 OP2 0.124
REMARK 500 DT B 4 P DT B 4 OP1 0.113
REMARK 500 DT B 4 P DT B 4 OP2 0.120
REMARK 500 DT B 5 P DT B 5 OP1 0.106
REMARK 500 DT B 5 P DT B 5 OP2 0.111
REMARK 500 DC B 6 P DC B 6 OP1 0.105
REMARK 500 DC B 6 P DC B 6 OP2 0.115
REMARK 500 DT B 7 P DT B 7 OP1 0.103
REMARK 500 DT B 7 P DT B 7 OP2 0.112
REMARK 500 DT B 8 P DT B 8 OP2 0.119
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 A A 5 O5' - P - OP2 ANGL. DEV. = -5.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 141 DISTANCE = 9.47 ANGSTROMS
REMARK 525 HOH A 145 DISTANCE = 11.29 ANGSTROMS
REMARK 525 HOH B 141 DISTANCE = 6.35 ANGSTROMS
REMARK 525 HOH B 142 DISTANCE = 7.68 ANGSTROMS
REMARK 525 HOH B 143 DISTANCE = 7.28 ANGSTROMS
REMARK 525 HOH B 144 DISTANCE = 5.96 ANGSTROMS
REMARK 525 HOH B 145 DISTANCE = 11.17 ANGSTROMS
REMARK 525 HOH B 146 DISTANCE = 7.57 ANGSTROMS
REMARK 525 HOH B 147 DISTANCE = 6.19 ANGSTROMS
REMARK 525 HOH B 148 DISTANCE = 6.58 ANGSTROMS
REMARK 525 HOH B 151 DISTANCE = 6.29 ANGSTROMS
REMARK 525 HOH B 152 DISTANCE = 6.71 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for B 1 to 9
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4U6K RELATED DB: PDB
REMARK 900 RELATED ID: 4U6L RELATED DB: PDB
DBREF 4U6M A 1 9 PDB 4U6M 4U6M 1 9
DBREF 4U6M B 1 9 PDB 4U6M 4U6M 1 9
SEQRES 1 A 9 G A A G A A G A G
SEQRES 1 B 9 5CM DT DC DT DT DC DT DT 5CM
HET 5CM B 1 17
HET 5CM B 9 20
HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
FORMUL 2 5CM 2(C10 H16 N3 O7 P)
FORMUL 3 HOH *97(H2 O)
LINK O3' 5CM B 1 P DT B 2 1555 1555 1.60
LINK O3' DT B 8 P 5CM B 9 1555 1555 1.60
SITE 1 AC1 36 G A 1 A A 2 A A 3 G A 4
SITE 2 AC1 36 A A 5 A A 6 G A 7 A A 8
SITE 3 AC1 36 G A 9 HOH B 101 HOH B 102 HOH B 103
SITE 4 AC1 36 HOH B 104 HOH B 105 HOH B 106 HOH B 107
SITE 5 AC1 36 HOH B 108 HOH B 109 HOH B 110 HOH B 111
SITE 6 AC1 36 HOH B 112 HOH B 118 HOH B 119 HOH B 121
SITE 7 AC1 36 HOH B 122 HOH B 123 HOH B 124 HOH B 125
SITE 8 AC1 36 HOH B 126 HOH B 128 HOH B 129 HOH B 130
SITE 9 AC1 36 HOH B 132 HOH B 133 HOH B 140 HOH B 150
CRYST1 49.090 49.090 45.990 90.00 90.00 120.00 P 61 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020371 0.011761 0.000000 0.00000
SCALE2 0.000000 0.023522 0.000000 0.00000
SCALE3 0.000000 0.000000 0.021744 0.00000
ATOM 1 O5' G A 1 -16.741 -7.752 4.075 1.00 40.74 O
ATOM 2 C5' G A 1 -17.946 -7.149 4.545 1.00 36.92 C
ATOM 3 C4' G A 1 -19.044 -7.146 3.434 1.00 35.65 C
ATOM 4 O4' G A 1 -18.663 -6.230 2.376 1.00 37.17 O
ATOM 5 C3' G A 1 -19.273 -8.475 2.738 1.00 35.30 C
ATOM 6 O3' G A 1 -20.154 -9.296 3.390 1.00 35.98 O
ATOM 7 C2' G A 1 -19.812 -8.049 1.378 1.00 35.21 C
ATOM 8 O2' G A 1 -21.191 -7.745 1.372 1.00 36.26 O
ATOM 9 C1' G A 1 -18.994 -6.787 1.116 1.00 34.08 C
ATOM 10 N9 G A 1 -17.753 -7.059 0.399 1.00 33.68 N
ATOM 11 C8 G A 1 -16.476 -7.030 0.907 1.00 33.15 C
ATOM 12 N7 G A 1 -15.562 -7.284 0.009 1.00 33.69 N
ATOM 13 C5 G A 1 -16.279 -7.499 -1.160 1.00 31.49 C
ATOM 14 C6 G A 1 -15.829 -7.799 -2.466 1.00 31.09 C
ATOM 15 O6 G A 1 -14.662 -7.927 -2.869 1.00 30.42 O
ATOM 16 N1 G A 1 -16.894 -7.945 -3.352 1.00 29.63 N
ATOM 17 C2 G A 1 -18.223 -7.808 -3.021 1.00 29.50 C
ATOM 18 N2 G A 1 -19.108 -7.990 -4.010 1.00 27.75 N
ATOM 19 N3 G A 1 -18.652 -7.517 -1.806 1.00 29.92 N
ATOM 20 C4 G A 1 -17.633 -7.377 -0.933 1.00 31.07 C
ATOM 21 P A A 2 -19.837 -10.860 3.499 1.00 36.37 P
ATOM 22 OP1 A A 2 -20.878 -11.571 4.477 1.00 39.11 O
ATOM 23 OP2 A A 2 -18.267 -11.140 3.644 1.00 37.98 O
ATOM 24 O5' A A 2 -20.138 -11.445 1.999 1.00 35.27 O
ATOM 25 C5' A A 2 -21.436 -11.255 1.530 1.00 32.93 C
ATOM 26 C4' A A 2 -21.492 -11.451 -0.017 1.00 32.62 C
ATOM 27 O4' A A 2 -20.651 -10.461 -0.661 1.00 32.18 O
ATOM 28 C3' A A 2 -20.976 -12.770 -0.558 1.00 31.42 C
ATOM 29 O3' A A 2 -21.897 -13.787 -0.494 1.00 34.07 O
ATOM 30 C2' A A 2 -20.695 -12.399 -2.005 1.00 31.65 C
ATOM 31 O2' A A 2 -21.879 -12.271 -2.765 1.00 30.85 O
ATOM 32 C1' A A 2 -20.071 -11.019 -1.828 1.00 30.76 C
ATOM 33 N9 A A 2 -18.619 -11.058 -1.656 1.00 28.87 N
ATOM 34 C8 A A 2 -17.885 -10.964 -0.499 1.00 28.72 C
ATOM 35 N7 A A 2 -16.589 -11.021 -0.691 1.00 26.43 N
ATOM 36 C5 A A 2 -16.463 -11.163 -2.066 1.00 27.66 C
ATOM 37 C6 A A 2 -15.341 -11.274 -2.912 1.00 27.63 C
ATOM 38 N6 A A 2 -14.080 -11.243 -2.484 1.00 26.94 N
ATOM 39 N1 A A 2 -15.566 -11.415 -4.234 1.00 27.29 N
ATOM 40 C2 A A 2 -16.830 -11.428 -4.671 1.00 27.00 C
ATOM 41 N3 A A 2 -17.961 -11.322 -3.981 1.00 26.82 N
ATOM 42 C4 A A 2 -17.704 -11.193 -2.670 1.00 26.53 C
ATOM 43 P A A 3 -21.402 -15.301 -0.301 1.00 34.98 P
ATOM 44 OP1 A A 3 -22.673 -16.244 -0.139 1.00 37.08 O
ATOM 45 OP2 A A 3 -20.157 -15.429 0.705 1.00 34.98 O
ATOM 46 O5' A A 3 -20.719 -15.717 -1.735 1.00 34.59 O
ATOM 47 C5' A A 3 -21.590 -15.796 -2.820 1.00 33.09 C
ATOM 48 C4' A A 3 -20.791 -15.844 -4.159 1.00 33.64 C
ATOM 49 O4' A A 3 -19.920 -14.688 -4.233 1.00 31.70 O
ATOM 50 C3' A A 3 -19.864 -17.028 -4.367 1.00 34.04 C
ATOM 51 O3' A A 3 -20.500 -18.130 -4.886 1.00 36.63 O
ATOM 52 C2' A A 3 -18.878 -16.474 -5.384 1.00 31.75 C
ATOM 53 O2' A A 3 -19.377 -16.481 -6.703 1.00 31.71 O
ATOM 54 C1' A A 3 -18.723 -15.038 -4.895 1.00 30.28 C
ATOM 55 N9 A A 3 -17.619 -14.888 -3.955 1.00 26.63 N
ATOM 56 C8 A A 3 -17.659 -14.775 -2.588 1.00 26.40 C
ATOM 57 N7 A A 3 -16.478 -14.641 -2.038 1.00 25.26 N
ATOM 58 C5 A A 3 -15.604 -14.673 -3.117 1.00 23.65 C
ATOM 59 C6 A A 3 -14.209 -14.566 -3.203 1.00 25.90 C
ATOM 60 N6 A A 3 -13.413 -14.402 -2.141 1.00 23.24 N
ATOM 61 N1 A A 3 -13.648 -14.631 -4.430 1.00 25.50 N
ATOM 62 C2 A A 3 -14.448 -14.790 -5.495 1.00 24.86 C
ATOM 63 N3 A A 3 -15.772 -14.897 -5.542 1.00 25.68 N
ATOM 64 C4 A A 3 -16.294 -14.829 -4.301 1.00 26.56 C
ATOM 65 P G A 4 -19.852 -19.584 -4.698 1.00 40.79 P
ATOM 66 OP1 G A 4 -20.905 -20.711 -5.127 1.00 42.31 O
ATOM 67 OP2 G A 4 -19.029 -19.724 -3.325 1.00 37.79 O
ATOM 68 O5' G A 4 -18.626 -19.644 -5.786 1.00 38.89 O
ATOM 69 C5' G A 4 -18.967 -19.784 -7.132 1.00 38.24 C
ATOM 70 C4' G A 4 -17.683 -20.069 -7.989 1.00 37.51 C
ATOM 71 O4' G A 4 -16.855 -18.871 -8.059 1.00 35.26 O
ATOM 72 C3' G A 4 -16.745 -21.147 -7.463 1.00 39.07 C
ATOM 73 O3' G A 4 -17.090 -22.443 -7.789 1.00 42.15 O
ATOM 74 C2' G A 4 -15.433 -20.751 -8.119 1.00 37.03 C
ATOM 75 O2' G A 4 -15.386 -21.098 -9.490 1.00 38.42 O
ATOM 76 C1' G A 4 -15.484 -19.232 -7.956 1.00 35.05 C
ATOM 77 N9 G A 4 -14.998 -18.798 -6.649 1.00 31.88 N
ATOM 78 C8 G A 4 -15.759 -18.494 -5.545 1.00 31.32 C
ATOM 79 N7 G A 4 -15.046 -18.134 -4.512 1.00 29.42 N
ATOM 80 C5 G A 4 -13.731 -18.203 -4.960 1.00 29.83 C
ATOM 81 C6 G A 4 -12.519 -17.918 -4.283 1.00 28.27 C
ATOM 82 O6 G A 4 -12.366 -17.519 -3.125 1.00 29.14 O
ATOM 83 N1 G A 4 -11.409 -18.133 -5.102 1.00 28.26 N
ATOM 84 C2 G A 4 -11.461 -18.557 -6.411 1.00 29.56 C
ATOM 85 N2 G A 4 -10.276 -18.718 -7.033 1.00 28.67 N
ATOM 86 N3 G A 4 -12.591 -18.810 -7.060 1.00 30.17 N
ATOM 87 C4 G A 4 -13.682 -18.616 -6.275 1.00 30.75 C
ATOM 88 P A A 5 -16.960 -23.601 -6.683 1.00 42.47 P
ATOM 89 OP1 A A 5 -17.398 -25.004 -7.323 1.00 44.82 O
ATOM 90 OP2 A A 5 -17.522 -23.143 -5.244 1.00 42.05 O
ATOM 91 O5' A A 5 -15.358 -23.718 -6.333 1.00 42.20 O
ATOM 92 C5' A A 5 -14.549 -24.355 -7.264 1.00 38.81 C
ATOM 93 C4' A A 5 -13.040 -24.215 -6.863 1.00 38.31 C
ATOM 94 O4' A A 5 -12.722 -22.815 -6.638 1.00 35.88 O
ATOM 95 C3' A A 5 -12.561 -24.851 -5.569 1.00 38.48 C
ATOM 96 O3' A A 5 -12.420 -26.236 -5.591 1.00 40.74 O
ATOM 97 C2' A A 5 -11.215 -24.163 -5.418 1.00 36.54 C
ATOM 98 O2' A A 5 -10.254 -24.640 -6.333 1.00 36.50 O
ATOM 99 C1' A A 5 -11.590 -22.726 -5.787 1.00 33.88 C
ATOM 100 N9 A A 5 -11.949 -21.960 -4.594 1.00 32.67 N
ATOM 101 C8 A A 5 -13.191 -21.682 -4.077 1.00 31.48 C
ATOM 102 N7 A A 5 -13.154 -21.016 -2.945 1.00 31.51 N
ATOM 103 C5 A A 5 -11.795 -20.834 -2.711 1.00 29.87 C
ATOM 104 C6 A A 5 -11.084 -20.212 -1.666 1.00 29.24 C
ATOM 105 N6 A A 5 -11.662 -19.650 -0.599 1.00 27.61 N
ATOM 106 N1 A A 5 -9.739 -20.193 -1.750 1.00 29.47 N
ATOM 107 C2 A A 5 -9.153 -20.769 -2.809 1.00 28.87 C
ATOM 108 N3 A A 5 -9.709 -21.392 -3.841 1.00 27.61 N
ATOM 109 C4 A A 5 -11.046 -21.392 -3.729 1.00 29.62 C
ATOM 110 P A A 6 -12.585 -27.081 -4.229 1.00 41.16 P
ATOM 111 OP1 A A 6 -12.688 -28.644 -4.555 1.00 43.52 O
ATOM 112 OP2 A A 6 -13.619 -26.395 -3.204 1.00 40.75 O
ATOM 113 O5' A A 6 -11.178 -26.882 -3.432 1.00 39.55 O
ATOM 114 C5' A A 6 -10.033 -27.139 -4.165 1.00 39.64 C
ATOM 115 C4' A A 6 -8.794 -26.512 -3.465 1.00 39.37 C
ATOM 116 O4' A A 6 -8.970 -25.079 -3.349 1.00 39.21 O
ATOM 117 C3' A A 6 -8.528 -26.951 -2.040 1.00 40.10 C
ATOM 118 O3' A A 6 -7.913 -28.179 -1.945 1.00 41.99 O
ATOM 119 C2' A A 6 -7.639 -25.821 -1.538 1.00 39.34 C
ATOM 120 O2' A A 6 -6.306 -25.901 -2.002 1.00 39.10 O
ATOM 121 C1' A A 6 -8.322 -24.612 -2.176 1.00 37.06 C
ATOM 122 N9 A A 6 -9.332 -24.003 -1.312 1.00 36.19 N
ATOM 123 C8 A A 6 -10.696 -24.139 -1.385 1.00 34.66 C
ATOM 124 N7 A A 6 -11.343 -23.472 -0.460 1.00 34.24 N
ATOM 125 C5 A A 6 -10.336 -22.857 0.272 1.00 33.67 C
ATOM 126 C6 A A 6 -10.363 -22.014 1.390 1.00 31.84 C
ATOM 127 N6 A A 6 -11.485 -21.639 2.008 1.00 31.64 N
ATOM 128 N1 A A 6 -9.182 -21.566 1.867 1.00 31.75 N
ATOM 129 C2 A A 6 -8.057 -21.953 1.258 1.00 31.03 C
ATOM 130 N3 A A 6 -7.901 -22.747 0.208 1.00 33.32 N
ATOM 131 C4 A A 6 -9.094 -23.171 -0.245 1.00 33.50 C
ATOM 132 P G A 7 -8.169 -29.094 -0.653 1.00 41.60 P
ATOM 133 OP1 G A 7 -7.580 -30.564 -0.887 1.00 44.06 O
ATOM 134 OP2 G A 7 -9.650 -28.896 -0.072 1.00 41.49 O
ATOM 135 O5' G A 7 -7.267 -28.401 0.513 1.00 38.67 O
ATOM 136 C5' G A 7 -5.911 -28.272 0.234 1.00 39.75 C
ATOM 137 C4' G A 7 -5.237 -27.290 1.241 1.00 38.33 C
ATOM 138 O4' G A 7 -5.835 -25.976 1.108 1.00 39.64 O
ATOM 139 C3' G A 7 -5.357 -27.620 2.721 1.00 38.35 C
ATOM 140 O3' G A 7 -4.398 -28.511 3.160 1.00 38.23 O
ATOM 141 C2' G A 7 -5.150 -26.255 3.361 1.00 38.42 C
ATOM 142 O2' G A 7 -3.793 -25.872 3.471 1.00 40.43 O
ATOM 143 C1' G A 7 -5.881 -25.346 2.373 1.00 37.36 C
ATOM 144 N9 G A 7 -7.282 -25.147 2.724 1.00 36.39 N
ATOM 145 C8 G A 7 -8.381 -25.696 2.109 1.00 37.10 C
ATOM 146 N7 G A 7 -9.511 -25.314 2.642 1.00 35.50 N
ATOM 147 C5 G A 7 -9.130 -24.464 3.671 1.00 34.76 C
ATOM 148 C6 G A 7 -9.916 -23.743 4.601 1.00 33.79 C
ATOM 149 O6 G A 7 -11.145 -23.702 4.697 1.00 34.01 O
ATOM 150 N1 G A 7 -9.126 -23.012 5.478 1.00 32.70 N
ATOM 151 C2 G A 7 -7.754 -22.972 5.461 1.00 33.66 C
ATOM 152 N2 G A 7 -7.173 -22.196 6.383 1.00 31.67 N
ATOM 153 N3 G A 7 -7.009 -23.639 4.599 1.00 33.69 N
ATOM 154 C4 G A 7 -7.758 -24.358 3.739 1.00 34.86 C
ATOM 155 P A A 8 -4.721 -29.497 4.385 1.00 36.51 P
ATOM 156 OP1 A A 8 -3.549 -30.578 4.490 1.00 37.58 O
ATOM 157 OP2 A A 8 -6.244 -29.957 4.422 1.00 34.83 O
ATOM 158 O5' A A 8 -4.637 -28.551 5.729 1.00 34.02 O
ATOM 159 C5' A A 8 -3.359 -28.196 6.169 1.00 31.84 C
ATOM 160 C4' A A 8 -3.440 -27.390 7.510 1.00 31.87 C
ATOM 161 O4' A A 8 -3.999 -26.064 7.289 1.00 31.91 O
ATOM 162 C3' A A 8 -4.297 -27.975 8.617 1.00 31.50 C
ATOM 163 O3' A A 8 -3.704 -28.993 9.338 1.00 30.73 O
ATOM 164 C2' A A 8 -4.538 -26.743 9.470 1.00 29.48 C
ATOM 165 O2' A A 8 -3.388 -26.355 10.196 1.00 33.22 O
ATOM 166 C1' A A 8 -4.841 -25.717 8.381 1.00 30.76 C
ATOM 167 N9 A A 8 -6.230 -25.803 7.929 1.00 29.57 N
ATOM 168 C8 A A 8 -6.716 -26.495 6.853 1.00 28.57 C
ATOM 169 N7 A A 8 -8.013 -26.399 6.703 1.00 27.87 N
ATOM 170 C5 A A 8 -8.409 -25.580 7.752 1.00 28.67 C
ATOM 171 C6 A A 8 -9.667 -25.100 8.152 1.00 29.01 C
ATOM 172 N6 A A 8 -10.807 -25.386 7.516 1.00 28.50 N
ATOM 173 N1 A A 8 -9.717 -24.307 9.246 1.00 30.12 N
ATOM 174 C2 A A 8 -8.575 -24.024 9.884 1.00 29.08 C
ATOM 175 N3 A A 8 -7.334 -24.421 9.606 1.00 29.99 N
ATOM 176 C4 A A 8 -7.322 -25.205 8.515 1.00 28.67 C
ATOM 177 P G A 9 -4.611 -30.174 9.947 1.00 29.49 P
ATOM 178 OP1 G A 9 -3.668 -31.226 10.647 1.00 30.23 O
ATOM 179 OP2 G A 9 -5.754 -30.660 8.942 1.00 28.32 O
ATOM 180 O5' G A 9 -5.486 -29.474 11.134 1.00 30.10 O
ATOM 181 C5' G A 9 -4.764 -29.026 12.243 1.00 30.16 C
ATOM 182 C4' G A 9 -5.670 -28.142 13.160 1.00 28.56 C
ATOM 183 O4' G A 9 -6.252 -27.079 12.362 1.00 28.35 O
ATOM 184 C3' G A 9 -6.876 -28.829 13.772 1.00 29.08 C
ATOM 185 O3' G A 9 -6.575 -29.690 14.869 1.00 31.14 O
ATOM 186 C2' G A 9 -7.779 -27.645 14.074 1.00 29.82 C
ATOM 187 O2' G A 9 -7.389 -26.900 15.208 1.00 31.01 O
ATOM 188 C1' G A 9 -7.562 -26.800 12.821 1.00 27.90 C
ATOM 189 N9 G A 9 -8.513 -27.167 11.781 1.00 27.79 N
ATOM 190 C8 G A 9 -8.303 -27.970 10.689 1.00 27.05 C
ATOM 191 N7 G A 9 -9.380 -28.144 9.972 1.00 26.04 N
ATOM 192 C5 G A 9 -10.349 -27.399 10.626 1.00 26.89 C
ATOM 193 C6 G A 9 -11.721 -27.209 10.329 1.00 26.47 C
ATOM 194 O6 G A 9 -12.381 -27.677 9.399 1.00 27.06 O
ATOM 195 N1 G A 9 -12.335 -26.383 11.264 1.00 26.37 N
ATOM 196 C2 G A 9 -11.715 -25.820 12.347 1.00 26.46 C
ATOM 197 N2 G A 9 -12.481 -25.071 13.152 1.00 28.75 N
ATOM 198 N3 G A 9 -10.438 -25.985 12.631 1.00 27.54 N
ATOM 199 C4 G A 9 -9.823 -26.784 11.737 1.00 26.96 C
TER 200 G A 9
HETATM 201 N1 5CM B 1 -17.189 -25.137 12.131 1.00 30.18 N
HETATM 202 C2 5CM B 1 -15.808 -25.318 12.164 1.00 29.54 C
HETATM 203 N3 5CM B 1 -15.205 -26.012 11.170 1.00 29.35 N
HETATM 204 C4 5CM B 1 -15.934 -26.518 10.175 1.00 31.31 C
HETATM 205 C5 5CM B 1 -17.339 -26.338 10.111 1.00 31.00 C
HETATM 206 C5A 5CM B 1 -18.095 -26.916 8.957 1.00 33.60 C
HETATM 207 C6 5CM B 1 -17.924 -25.649 11.100 1.00 31.08 C
HETATM 208 O2 5CM B 1 -15.169 -24.837 13.105 1.00 27.41 O
HETATM 209 N4 5CM B 1 -15.306 -27.216 9.223 1.00 31.73 N
HETATM 210 C1' 5CM B 1 -17.829 -24.387 13.227 1.00 30.34 C
HETATM 211 C2' 5CM B 1 -17.570 -22.887 13.165 1.00 32.01 C
HETATM 212 C3' 5CM B 1 -18.759 -22.401 12.363 1.00 33.61 C
HETATM 213 C4' 5CM B 1 -19.873 -23.283 12.903 1.00 33.36 C
HETATM 214 O4' 5CM B 1 -19.240 -24.565 13.120 1.00 31.38 O
HETATM 215 O3' 5CM B 1 -19.039 -21.028 12.615 1.00 34.72 O
HETATM 216 C5' 5CM B 1 -21.049 -23.437 11.970 1.00 36.99 C
HETATM 217 O5' 5CM B 1 -20.600 -23.811 10.668 1.00 40.64 O
ATOM 218 P DT B 2 -18.301 -19.895 11.753 1.00 35.34 P
ATOM 219 OP1 DT B 2 -18.826 -18.444 12.191 1.00 36.67 O
ATOM 220 OP2 DT B 2 -18.184 -20.289 10.192 1.00 34.16 O
ATOM 221 O5' DT B 2 -16.739 -19.961 12.219 1.00 32.73 O
ATOM 222 C5' DT B 2 -16.364 -19.623 13.550 1.00 31.12 C
ATOM 223 C4' DT B 2 -14.878 -19.814 13.747 1.00 29.84 C
ATOM 224 O4' DT B 2 -14.500 -21.205 13.650 1.00 27.59 O
ATOM 225 C3' DT B 2 -13.988 -19.124 12.728 1.00 31.31 C
ATOM 226 O3' DT B 2 -13.849 -17.736 13.021 1.00 35.25 O
ATOM 227 C2' DT B 2 -12.682 -19.858 12.934 1.00 28.64 C
ATOM 228 C1' DT B 2 -13.171 -21.289 13.124 1.00 26.94 C
ATOM 229 N1 DT B 2 -13.231 -22.041 11.860 1.00 25.15 N
ATOM 230 C2 DT B 2 -12.063 -22.589 11.382 1.00 26.08 C
ATOM 231 O2 DT B 2 -10.983 -22.439 11.925 1.00 27.51 O
ATOM 232 N3 DT B 2 -12.205 -23.318 10.232 1.00 25.90 N
ATOM 233 C4 DT B 2 -13.365 -23.535 9.521 1.00 24.33 C
ATOM 234 O4 DT B 2 -13.342 -24.248 8.524 1.00 24.36 O
ATOM 235 C5 DT B 2 -14.544 -22.888 10.051 1.00 24.05 C
ATOM 236 C7 DT B 2 -15.835 -23.013 9.309 1.00 25.52 C
ATOM 237 C6 DT B 2 -14.422 -22.191 11.185 1.00 24.26 C
ATOM 238 P DC B 3 -13.680 -16.694 11.815 1.00 37.00 P
ATOM 239 OP1 DC B 3 -13.771 -15.199 12.374 1.00 37.99 O
ATOM 240 OP2 DC B 3 -14.535 -17.141 10.527 1.00 36.88 O
ATOM 241 O5' DC B 3 -12.138 -16.914 11.294 1.00 36.83 O
ATOM 242 C5' DC B 3 -11.037 -16.749 12.185 1.00 35.79 C
ATOM 243 C4' DC B 3 -9.793 -17.401 11.625 1.00 35.87 C
ATOM 244 O4' DC B 3 -9.981 -18.826 11.485 1.00 36.21 O
ATOM 245 C3' DC B 3 -9.352 -16.951 10.239 1.00 35.74 C
ATOM 246 O3' DC B 3 -8.595 -15.743 10.302 1.00 37.48 O
ATOM 247 C2' DC B 3 -8.462 -18.101 9.812 1.00 35.70 C
ATOM 248 C1' DC B 3 -9.190 -19.305 10.396 1.00 34.05 C
ATOM 249 N1 DC B 3 -10.083 -19.947 9.422 1.00 32.51 N
ATOM 250 C2 DC B 3 -9.530 -20.848 8.520 1.00 31.05 C
ATOM 251 O2 DC B 3 -8.311 -21.075 8.577 1.00 32.09 O
ATOM 252 N3 DC B 3 -10.326 -21.446 7.610 1.00 29.62 N
ATOM 253 C4 DC B 3 -11.628 -21.165 7.576 1.00 29.06 C
ATOM 254 N4 DC B 3 -12.368 -21.768 6.653 1.00 29.27 N
ATOM 255 C5 DC B 3 -12.224 -20.249 8.487 1.00 28.17 C
ATOM 256 C6 DC B 3 -11.421 -19.669 9.388 1.00 29.86 C
ATOM 257 P DT B 4 -8.452 -14.829 8.989 1.00 35.87 P
ATOM 258 OP1 DT B 4 -7.694 -13.470 9.354 1.00 38.64 O
ATOM 259 OP2 DT B 4 -9.809 -14.795 8.132 1.00 35.88 O
ATOM 260 O5' DT B 4 -7.472 -15.681 7.977 1.00 34.71 O
ATOM 261 C5' DT B 4 -6.122 -15.965 8.329 1.00 33.18 C
ATOM 262 C4' DT B 4 -5.451 -16.769 7.241 1.00 33.09 C
ATOM 263 O4' DT B 4 -6.011 -18.093 7.141 1.00 32.93 O
ATOM 264 C3' DT B 4 -5.584 -16.204 5.836 1.00 32.64 C
ATOM 265 O3' DT B 4 -4.628 -15.178 5.626 1.00 31.63 O
ATOM 266 C2' DT B 4 -5.279 -17.416 4.984 1.00 32.15 C
ATOM 267 C1' DT B 4 -5.956 -18.528 5.780 1.00 31.67 C
ATOM 268 N1 DT B 4 -7.331 -18.775 5.329 1.00 30.44 N
ATOM 269 C2 DT B 4 -7.500 -19.603 4.248 1.00 30.84 C
ATOM 270 O2 DT B 4 -6.567 -20.108 3.643 1.00 32.29 O
ATOM 271 N3 DT B 4 -8.805 -19.811 3.891 1.00 30.33 N
ATOM 272 C4 DT B 4 -9.931 -19.269 4.481 1.00 29.75 C
ATOM 273 O4 DT B 4 -11.038 -19.557 4.057 1.00 30.15 O
ATOM 274 C5 DT B 4 -9.679 -18.383 5.589 1.00 31.05 C
ATOM 275 C7 DT B 4 -10.838 -17.712 6.257 1.00 32.45 C
ATOM 276 C6 DT B 4 -8.406 -18.193 5.964 1.00 29.36 C
ATOM 277 P DT B 5 -4.924 -14.041 4.546 1.00 30.84 P
ATOM 278 OP1 DT B 5 -3.821 -12.902 4.681 1.00 31.82 O
ATOM 279 OP2 DT B 5 -6.473 -13.666 4.463 1.00 31.11 O
ATOM 280 O5' DT B 5 -4.649 -14.771 3.119 1.00 28.83 O
ATOM 281 C5' DT B 5 -3.314 -15.139 2.773 1.00 28.33 C
ATOM 282 C4' DT B 5 -3.301 -16.090 1.603 1.00 28.97 C
ATOM 283 O4' DT B 5 -4.049 -17.281 1.919 1.00 27.91 O
ATOM 284 C3' DT B 5 -3.926 -15.585 0.312 1.00 28.49 C
ATOM 285 O3' DT B 5 -3.008 -14.766 -0.407 1.00 29.43 O
ATOM 286 C2' DT B 5 -4.169 -16.884 -0.420 1.00 27.90 C
ATOM 287 C1' DT B 5 -4.601 -17.807 0.717 1.00 27.46 C
ATOM 288 N1 DT B 5 -6.058 -17.827 0.865 1.00 27.40 N
ATOM 289 C2 DT B 5 -6.738 -18.736 0.108 1.00 26.87 C
ATOM 290 O2 DT B 5 -6.180 -19.497 -0.662 1.00 27.66 O
ATOM 291 N3 DT B 5 -8.095 -18.718 0.275 1.00 26.08 N
ATOM 292 C4 DT B 5 -8.821 -17.890 1.102 1.00 26.11 C
ATOM 293 O4 DT B 5 -10.041 -17.996 1.148 1.00 27.04 O
ATOM 294 C5 DT B 5 -8.043 -16.944 1.862 1.00 27.10 C
ATOM 295 C7 DT B 5 -8.749 -15.984 2.764 1.00 28.92 C
ATOM 296 C6 DT B 5 -6.711 -16.965 1.715 1.00 27.40 C
ATOM 297 P DC B 6 -3.560 -13.665 -1.441 1.00 30.04 P
ATOM 298 OP1 DC B 6 -2.398 -12.652 -1.829 1.00 31.03 O
ATOM 299 OP2 DC B 6 -5.009 -13.117 -1.041 1.00 29.08 O
ATOM 300 O5' DC B 6 -3.921 -14.497 -2.786 1.00 29.01 O
ATOM 301 C5' DC B 6 -2.890 -15.112 -3.547 1.00 28.33 C
ATOM 302 C4' DC B 6 -3.495 -15.908 -4.675 1.00 28.37 C
ATOM 303 O4' DC B 6 -4.278 -16.986 -4.125 1.00 28.82 O
ATOM 304 C3' DC B 6 -4.483 -15.124 -5.520 1.00 28.23 C
ATOM 305 O3' DC B 6 -3.801 -14.391 -6.531 1.00 29.70 O
ATOM 306 C2' DC B 6 -5.330 -16.229 -6.112 1.00 28.79 C
ATOM 307 C1' DC B 6 -5.413 -17.216 -4.950 1.00 26.91 C
ATOM 308 N1 DC B 6 -6.612 -17.025 -4.130 1.00 26.66 N
ATOM 309 C2 DC B 6 -7.813 -17.543 -4.597 1.00 26.59 C
ATOM 310 O2 DC B 6 -7.813 -18.157 -5.676 1.00 27.17 O
ATOM 311 N3 DC B 6 -8.937 -17.367 -3.872 1.00 26.03 N
ATOM 312 C4 DC B 6 -8.887 -16.708 -2.712 1.00 26.33 C
ATOM 313 N4 DC B 6 -10.026 -16.562 -2.031 1.00 25.83 N
ATOM 314 C5 DC B 6 -7.668 -16.172 -2.204 1.00 25.18 C
ATOM 315 C6 DC B 6 -6.562 -16.352 -2.940 1.00 26.23 C
ATOM 316 P DT B 7 -4.335 -12.939 -6.948 1.00 29.85 P
ATOM 317 OP1 DT B 7 -3.374 -12.296 -8.036 1.00 31.47 O
ATOM 318 OP2 DT B 7 -4.844 -12.080 -5.701 1.00 29.42 O
ATOM 319 O5' DT B 7 -5.728 -13.229 -7.717 1.00 29.36 O
ATOM 320 C5' DT B 7 -5.723 -13.932 -8.950 1.00 28.17 C
ATOM 321 C4' DT B 7 -7.124 -14.358 -9.307 1.00 26.92 C
ATOM 322 O4' DT B 7 -7.646 -15.195 -8.257 1.00 26.37 O
ATOM 323 C3' DT B 7 -8.130 -13.225 -9.420 1.00 27.01 C
ATOM 324 O3' DT B 7 -8.074 -12.672 -10.731 1.00 29.06 O
ATOM 325 C2' DT B 7 -9.436 -13.959 -9.206 1.00 25.92 C
ATOM 326 C1' DT B 7 -9.055 -15.018 -8.175 1.00 25.89 C
ATOM 327 N1 DT B 7 -9.382 -14.595 -6.809 1.00 24.75 N
ATOM 328 C2 DT B 7 -10.672 -14.799 -6.398 1.00 25.77 C
ATOM 329 O2 DT B 7 -11.517 -15.306 -7.111 1.00 25.72 O
ATOM 330 N3 DT B 7 -10.943 -14.374 -5.126 1.00 24.13 N
ATOM 331 C4 DT B 7 -10.071 -13.763 -4.248 1.00 25.50 C
ATOM 332 O4 DT B 7 -10.465 -13.429 -3.135 1.00 25.32 O
ATOM 333 C5 DT B 7 -8.729 -13.570 -4.746 1.00 24.32 C
ATOM 334 C7 DT B 7 -7.721 -12.897 -3.870 1.00 27.61 C
ATOM 335 C6 DT B 7 -8.450 -14.003 -5.985 1.00 26.13 C
ATOM 336 P DT B 8 -8.539 -11.159 -10.981 1.00 31.57 P
ATOM 337 OP1 DT B 8 -8.071 -10.712 -12.429 1.00 30.47 O
ATOM 338 OP2 DT B 8 -8.307 -10.197 -9.719 1.00 29.59 O
ATOM 339 O5' DT B 8 -10.163 -11.223 -11.035 1.00 29.02 O
ATOM 340 C5' DT B 8 -10.824 -11.934 -12.076 1.00 28.96 C
ATOM 341 C4' DT B 8 -12.277 -12.141 -11.727 1.00 28.16 C
ATOM 342 O4' DT B 8 -12.379 -12.870 -10.486 1.00 29.62 O
ATOM 343 C3' DT B 8 -13.078 -10.869 -11.495 1.00 28.45 C
ATOM 344 O3' DT B 8 -13.616 -10.409 -12.731 1.00 29.58 O
ATOM 345 C2' DT B 8 -14.197 -11.349 -10.596 1.00 27.64 C
ATOM 346 C1' DT B 8 -13.538 -12.445 -9.777 1.00 27.55 C
ATOM 347 N1 DT B 8 -13.118 -11.997 -8.443 1.00 25.13 N
ATOM 348 C2 DT B 8 -14.065 -12.027 -7.456 1.00 25.88 C
ATOM 349 O2 DT B 8 -15.214 -12.381 -7.657 1.00 26.75 O
ATOM 350 N3 DT B 8 -13.627 -11.621 -6.226 1.00 25.17 N
ATOM 351 C4 DT B 8 -12.361 -11.189 -5.895 1.00 25.13 C
ATOM 352 O4 DT B 8 -12.111 -10.873 -4.738 1.00 25.13 O
ATOM 353 C5 DT B 8 -11.414 -11.160 -6.989 1.00 21.35 C
ATOM 354 C7 DT B 8 -10.024 -10.680 -6.736 1.00 23.15 C
ATOM 355 C6 DT B 8 -11.835 -11.569 -8.194 1.00 25.25 C
HETATM 356 N1 5CM B 9 -16.878 -9.023 -8.199 1.00 25.40 N
HETATM 357 C2 5CM B 9 -17.127 -8.882 -6.837 1.00 25.03 C
HETATM 358 N3 5CM B 9 -16.113 -8.566 -6.013 1.00 25.12 N
HETATM 359 C4 5CM B 9 -14.892 -8.369 -6.504 1.00 25.20 C
HETATM 360 C5 5CM B 9 -14.614 -8.475 -7.893 1.00 23.17 C
HETATM 361 C5A 5CM B 9 -13.229 -8.192 -8.389 1.00 25.39 C
HETATM 362 C6 5CM B 9 -15.624 -8.814 -8.698 1.00 24.58 C
HETATM 363 O2 5CM B 9 -18.283 -9.047 -6.417 1.00 27.31 O
HETATM 364 N4 5CM B 9 -13.926 -8.068 -5.647 1.00 25.39 N
HETATM 365 C1' 5CM B 9 -17.984 -9.398 -9.079 1.00 25.20 C
HETATM 366 C2' 5CM B 9 -18.777 -8.202 -9.601 1.00 25.07 C
HETATM 367 C3' 5CM B 9 -18.134 -7.947 -10.947 1.00 26.08 C
HETATM 368 C4' 5CM B 9 -17.811 -9.356 -11.412 1.00 26.24 C
HETATM 369 O4' 5CM B 9 -17.428 -10.057 -10.210 1.00 26.30 O
HETATM 370 O3' 5CM B 9 -19.020 -7.328 -11.870 1.00 26.99 O
HETATM 371 C5' 5CM B 9 -16.719 -9.461 -12.450 1.00 25.80 C
HETATM 372 O5' 5CM B 9 -15.524 -8.853 -11.974 1.00 27.60 O
HETATM 373 P 5CM B 9 -14.149 -8.903 -12.855 1.00 29.20 P
HETATM 374 OP1 5CM B 9 -14.580 -8.619 -14.360 1.00 30.14 O
HETATM 375 OP2 5CM B 9 -13.218 -7.866 -12.063 1.00 27.46 O
TER 376 5CM B 9
HETATM 377 O HOH A 101 -4.164 -30.010 15.401 1.00 49.50 O
HETATM 378 O HOH A 102 -3.330 -23.912 4.935 1.00 50.05 O
HETATM 379 O HOH A 103 -22.192 -13.737 4.150 1.00 56.10 O
HETATM 380 O HOH A 104 -21.479 -7.504 -1.168 1.00 40.47 O
HETATM 381 O HOH A 105 -7.671 -24.784 -6.404 1.00 40.79 O
HETATM 382 O HOH A 106 -5.573 -23.227 11.082 1.00 38.40 O
HETATM 383 O HOH A 107 -3.634 -24.791 12.320 1.00 40.38 O
HETATM 384 O HOH A 108 -17.094 -18.051 -2.612 1.00 31.99 O
HETATM 385 O HOH A 109 -21.726 -16.879 -7.972 1.00 51.26 O
HETATM 386 O HOH A 110 -1.123 -27.757 10.654 1.00 49.95 O
HETATM 387 O HOH A 111 -7.762 -22.517 -5.366 1.00 39.81 O
HETATM 388 O HOH A 112 -20.585 -11.354 -5.043 1.00 35.40 O
HETATM 389 O HOH A 113 -12.144 -7.537 -1.619 1.00 43.69 O
HETATM 390 O HOH A 114 -3.338 -33.094 6.231 1.00 50.79 O
HETATM 391 O HOH A 115 -10.727 -29.254 7.316 1.00 41.10 O
HETATM 392 O HOH A 116 -8.468 -30.857 7.290 1.00 58.15 O
HETATM 393 O HOH A 117 -5.762 -33.036 6.747 1.00 47.30 O
HETATM 394 O HOH A 118 -2.761 -32.048 13.845 1.00 52.83 O
HETATM 395 O HOH A 119 -13.307 -30.247 7.326 1.00 45.11 O
HETATM 396 O HOH A 120 -22.303 -14.995 -8.090 1.00 75.23 O
HETATM 397 O HOH A 121 -14.979 -27.753 -8.133 1.00 61.53 O
HETATM 398 O HOH A 122 -13.430 -4.435 1.445 1.00 54.49 O
HETATM 399 O HOH A 123 -4.583 -32.917 1.404 1.00 59.98 O
HETATM 400 O HOH A 124 -24.691 -17.162 -5.468 1.00 67.72 O
HETATM 401 O HOH A 125 -12.851 -10.754 -0.104 1.00 41.03 O
HETATM 402 O HOH A 126 -15.352 -10.885 1.944 1.00 49.76 O
HETATM 403 O HOH A 127 -14.215 -14.281 0.297 1.00 48.92 O
HETATM 404 O HOH A 128 -14.182 -17.642 -1.094 1.00 30.71 O
HETATM 405 O HOH A 129 -13.599 -24.440 4.073 1.00 44.74 O
HETATM 406 O HOH A 130 -15.220 -20.368 -0.872 1.00 50.29 O
HETATM 407 O HOH A 131 -22.500 -18.186 3.423 1.00 53.54 O
HETATM 408 O HOH A 132 -17.306 -13.356 2.875 1.00 50.08 O
HETATM 409 O HOH A 133 -14.265 -23.083 -0.377 1.00 50.40 O
HETATM 410 O HOH A 134 -12.550 -30.515 -0.559 1.00 57.83 O
HETATM 411 O HOH A 135 -14.308 -32.591 -2.811 1.00 70.05 O
HETATM 412 O HOH A 136 -9.976 -30.780 -3.238 1.00 52.25 O
HETATM 413 O HOH A 137 -5.447 -31.717 -2.339 1.00 71.21 O
HETATM 414 O HOH A 138 -6.247 -29.159 -4.929 1.00 63.24 O
HETATM 415 O HOH A 139 -12.558 -33.860 0.337 1.00 66.89 O
HETATM 416 O HOH A 140 -2.474 -30.320 0.345 1.00 61.31 O
HETATM 417 O HOH A 141 -17.167 -34.297 1.935 1.00 60.84 O
HETATM 418 O HOH A 142 -20.350 -19.831 -1.141 1.00 62.54 O
HETATM 419 O HOH A 143 -12.808 -26.747 -0.298 1.00 75.37 O
HETATM 420 O HOH A 144 -16.968 -17.240 0.065 1.00 61.19 O
HETATM 421 O HOH A 145 -20.204 -34.443 1.550 1.00 70.65 O
HETATM 422 O HOH B 101 -2.922 -11.094 -4.224 1.00 51.76 O
HETATM 423 O HOH B 102 -16.095 -6.765 -15.578 1.00 34.19 O
HETATM 424 O HOH B 103 -9.580 -7.953 -8.966 1.00 46.96 O
HETATM 425 O HOH B 104 -6.762 -20.423 -6.725 1.00 46.67 O
HETATM 426 O HOH B 105 -19.812 -17.640 14.629 1.00 65.71 O
HETATM 427 O HOH B 106 -18.375 -6.683 -14.480 1.00 39.85 O
HETATM 428 O HOH B 107 -4.836 -22.224 3.044 1.00 42.67 O
HETATM 429 O HOH B 108 -20.630 -16.801 10.774 1.00 45.89 O
HETATM 430 O HOH B 109 -10.904 -6.784 -10.829 1.00 44.75 O
HETATM 431 O HOH B 110 -11.180 -7.255 -5.744 1.00 35.40 O
HETATM 432 O HOH B 111 -3.663 -11.779 7.448 1.00 56.27 O
HETATM 433 O HOH B 112 -2.042 -14.592 -9.571 1.00 32.87 O
HETATM 434 O HOH B 113 -15.957 -29.869 7.644 1.00 48.58 O
HETATM 435 O HOH B 114 -21.341 -8.222 -6.557 1.00 36.91 O
HETATM 436 O HOH B 115 -1.556 -13.663 6.882 1.00 53.70 O
HETATM 437 O HOH B 116 -11.300 -9.678 -15.938 1.00 64.05 O
HETATM 438 O HOH B 117 -19.352 -14.344 13.065 1.00 71.96 O
HETATM 439 O HOH B 118 -5.996 -9.212 -8.376 1.00 45.72 O
HETATM 440 O HOH B 119 -3.751 -10.113 -9.376 1.00 52.21 O
HETATM 441 O HOH B 120 -2.537 -8.805 -7.973 1.00 56.30 O
HETATM 442 O HOH B 121 -9.594 -14.256 -0.436 1.00 36.53 O
HETATM 443 O HOH B 122 -7.093 -13.742 0.278 1.00 35.43 O
HETATM 444 O HOH B 123 -12.353 -16.858 1.780 1.00 38.65 O
HETATM 445 O HOH B 124 -9.024 -13.947 5.509 1.00 40.45 O
HETATM 446 O HOH B 125 -12.205 -14.095 8.853 1.00 65.14 O
HETATM 447 O HOH B 126 -15.890 -19.153 9.173 1.00 35.66 O
HETATM 448 O HOH B 127 -19.524 -17.507 8.217 1.00 69.52 O
HETATM 449 O HOH B 128 -14.814 -24.935 6.574 1.00 33.54 O
HETATM 450 O HOH B 129 -19.401 -21.246 9.185 1.00 45.75 O
HETATM 451 O HOH B 130 -10.299 -9.139 -3.538 1.00 41.00 O
HETATM 452 O HOH B 131 -7.479 -8.827 -3.931 1.00 55.22 O
HETATM 453 O HOH B 132 -6.000 -9.695 -6.088 1.00 45.03 O
HETATM 454 O HOH B 133 -7.271 -12.288 2.489 1.00 44.65 O
HETATM 455 O HOH B 134 -5.631 -10.235 1.895 1.00 47.43 O
HETATM 456 O HOH B 135 -6.855 -10.739 7.369 1.00 59.87 O
HETATM 457 O HOH B 136 -7.669 -9.523 5.402 1.00 58.89 O
HETATM 458 O HOH B 137 -13.950 -18.690 4.867 1.00 47.27 O
HETATM 459 O HOH B 138 -15.507 -20.857 6.356 1.00 48.10 O
HETATM 460 O HOH B 139 -20.658 -19.483 6.104 1.00 60.85 O
HETATM 461 O HOH B 140 -5.887 -10.545 -1.339 1.00 55.78 O
HETATM 462 O HOH B 141 -2.562 -7.254 1.519 1.00 65.39 O
HETATM 463 O HOH B 142 -5.544 -5.441 5.326 1.00 63.44 O
HETATM 464 O HOH B 143 -6.800 -6.564 7.216 1.00 72.11 O
HETATM 465 O HOH B 144 -3.443 -9.729 11.202 1.00 55.77 O
HETATM 466 O HOH B 145 -1.384 -8.275 16.971 1.00 57.93 O
HETATM 467 O HOH B 146 -16.959 -31.458 3.174 1.00 53.68 O
HETATM 468 O HOH B 147 -0.429 -9.539 -12.734 1.00 55.65 O
HETATM 469 O HOH B 148 -5.090 -7.858 -17.550 1.00 62.51 O
HETATM 470 O HOH B 149 -17.599 -15.706 10.778 1.00 64.02 O
HETATM 471 O HOH B 150 -19.403 -23.837 8.327 1.00 54.12 O
HETATM 472 O HOH B 151 -8.761 -7.351 8.386 1.00 63.20 O
HETATM 473 O HOH B 152 -4.647 -7.429 8.482 1.00 82.75 O
CONECT 201 202 207 210
CONECT 202 201 203 208
CONECT 203 202 204
CONECT 204 203 205 209
CONECT 205 204 206 207
CONECT 206 205
CONECT 207 201 205
CONECT 208 202
CONECT 209 204
CONECT 210 201 211 214
CONECT 211 210 212
CONECT 212 211 213 215
CONECT 213 212 214 216
CONECT 214 210 213
CONECT 215 212 218
CONECT 216 213 217
CONECT 217 216
CONECT 218 215
CONECT 344 373
CONECT 356 357 362 365
CONECT 357 356 358 363
CONECT 358 357 359
CONECT 359 358 360 364
CONECT 360 359 361 362
CONECT 361 360
CONECT 362 356 360
CONECT 363 357
CONECT 364 359
CONECT 365 356 366 369
CONECT 366 365 367
CONECT 367 366 368 370
CONECT 368 367 369 371
CONECT 369 365 368
CONECT 370 367
CONECT 371 368 372
CONECT 372 371 373
CONECT 373 344 372 374 375
CONECT 374 373
CONECT 375 373
MASTER 339 0 2 0 0 0 9 6 471 2 39 2
END