data_4RIP
#
_entry.id 4RIP
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4RIP pdb_00004rip 10.2210/pdb4rip/pdb
NDB NA3217 ? ?
RCSB RCSB087394 ? ?
WWPDB D_1000087394 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-02-11
2 'Structure model' 1 1 2015-02-25
3 'Structure model' 1 2 2015-03-04
4 'Structure model' 1 3 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Derived calculations'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4RIP
_pdbx_database_status.recvd_initial_deposition_date 2014-10-07
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 4RIM
_pdbx_database_related.details 'Native structure of intercalation-locked DNA tetraplex'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Tripathi, S.K.' 1
'Zhang, D.' 2
'Paukstelis, P.' 3
#
_citation.id primary
_citation.title 'An intercalation-locked parallel-stranded DNA tetraplex.'
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_volume 43
_citation.page_first 1937
_citation.page_last 1944
_citation.year 2015
_citation.journal_id_ASTM NARHAD
_citation.country UK
_citation.journal_id_ISSN 0305-1048
_citation.journal_id_CSD 0389
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 25628357
_citation.pdbx_database_id_DOI 10.1093/nar/gkv033
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tripathi, S.' 1 ?
primary 'Zhang, D.' 2 ?
primary 'Paukstelis, P.J.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*AP*CP*(BRU)P*CP*GP*GP*AP*(BRU)P*GP*AP*T)-3')
;
3502.962 1 ? ? ? ?
2 water nat water 18.015 25 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(BRU)(DC)(DG)(DG)(DA)(BRU)(DG)(DA)(DT)'
_entity_poly.pdbx_seq_one_letter_code_can ACUCGGAUGAT
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DA n
1 2 DC n
1 3 BRU n
1 4 DC n
1 5 DG n
1 6 DG n
1 7 DA n
1 8 BRU n
1 9 DG n
1 10 DA n
1 11 DT n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DA 1 1 1 DA DA A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 BRU 3 3 3 BRU BRU A . n
A 1 4 DC 4 4 4 DC DC A . n
A 1 5 DG 5 5 5 DG DG A . n
A 1 6 DG 6 6 6 DG DG A . n
A 1 7 DA 7 7 7 DA DA A . n
A 1 8 BRU 8 8 8 BRU BRU A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DA 10 10 10 DA DA A . n
A 1 11 DT 11 11 11 DT DT A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 2 HOH HOH A .
B 2 HOH 3 103 3 HOH HOH A .
B 2 HOH 4 104 4 HOH HOH A .
B 2 HOH 5 105 5 HOH HOH A .
B 2 HOH 6 106 6 HOH HOH A .
B 2 HOH 7 107 7 HOH HOH A .
B 2 HOH 8 108 8 HOH HOH A .
B 2 HOH 9 109 9 HOH HOH A .
B 2 HOH 10 110 10 HOH HOH A .
B 2 HOH 11 111 11 HOH HOH A .
B 2 HOH 12 112 12 HOH HOH A .
B 2 HOH 13 113 13 HOH HOH A .
B 2 HOH 14 114 14 HOH HOH A .
B 2 HOH 15 115 15 HOH HOH A .
B 2 HOH 16 116 16 HOH HOH A .
B 2 HOH 17 117 17 HOH HOH A .
B 2 HOH 18 118 18 HOH HOH A .
B 2 HOH 19 119 19 HOH HOH A .
B 2 HOH 20 120 20 HOH HOH A .
B 2 HOH 21 121 21 HOH HOH A .
B 2 HOH 22 122 22 HOH HOH A .
B 2 HOH 23 123 23 HOH HOH A .
B 2 HOH 24 124 24 HOH HOH A .
B 2 HOH 25 125 25 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A DT 11 ? "O5'" ? A DT 11 "O5'"
2 1 Y 1 A DT 11 ? "C5'" ? A DT 11 "C5'"
3 1 Y 1 A DT 11 ? "C4'" ? A DT 11 "C4'"
4 1 Y 1 A DT 11 ? "O4'" ? A DT 11 "O4'"
5 1 Y 1 A DT 11 ? "C3'" ? A DT 11 "C3'"
6 1 Y 1 A DT 11 ? "O3'" ? A DT 11 "O3'"
7 1 Y 1 A DT 11 ? "C2'" ? A DT 11 "C2'"
8 1 Y 1 A DT 11 ? "C1'" ? A DT 11 "C1'"
9 1 Y 1 A DT 11 ? N1 ? A DT 11 N1
10 1 Y 1 A DT 11 ? C2 ? A DT 11 C2
11 1 Y 1 A DT 11 ? O2 ? A DT 11 O2
12 1 Y 1 A DT 11 ? N3 ? A DT 11 N3
13 1 Y 1 A DT 11 ? C4 ? A DT 11 C4
14 1 Y 1 A DT 11 ? O4 ? A DT 11 O4
15 1 Y 1 A DT 11 ? C5 ? A DT 11 C5
16 1 Y 1 A DT 11 ? C7 ? A DT 11 C7
17 1 Y 1 A DT 11 ? C6 ? A DT 11 C6
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CBF1.3 'data collection' . ? 1
SHELXS phasing . ? 2
PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3
MOSFLM 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 4RIP
_cell.length_a 26.400
_cell.length_b 26.400
_cell.length_c 166.452
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4RIP
_symmetry.space_group_name_H-M 'P 62 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 180
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4RIP
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.39
_exptl_crystal.density_percent_sol 48.54
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 300
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.4
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
'100 mM MgCl2, 5% PEG400, 30 mM sodium cacodylate, pH 7.4, 8mM cobalt hexamine, VAPOR DIFFUSION, SITTING DROP, temperature 300K'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector PIXEL
_diffrn_detector.type 'DECTRIS PILATUS 6M-F'
_diffrn_detector.pdbx_collection_date 2014-06-12
_diffrn_detector.details mirror
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator Silicon
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9198
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9198
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 4RIP
_reflns.observed_criterion_sigma_I 3.0
_reflns.observed_criterion_sigma_F 2.0
_reflns.d_resolution_low 55.484
_reflns.d_resolution_high 2.03
_reflns.number_obs 2699
_reflns.number_all ?
_reflns.percent_possible_obs 99
_reflns.pdbx_Rmerge_I_obs 0.063
_reflns.pdbx_Rsym_value 0.063
_reflns.pdbx_netI_over_sigmaI 2.9
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 9.5
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 2.03
_reflns_shell.d_res_low 2.14
_reflns_shell.percent_possible_all 99.8
_reflns_shell.Rmerge_I_obs 0.196
_reflns_shell.pdbx_Rsym_value 0.196
_reflns_shell.meanI_over_sigI_obs 3.6
_reflns_shell.pdbx_redundancy 9.8
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 4RIP
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 2422
_refine.ls_number_reflns_all 3804
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.46
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 55
_refine.ls_d_res_high 2.100
_refine.ls_percent_reflns_obs 99.63
_refine.ls_R_factor_obs 0.2328
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.2324
_refine.ls_R_factor_R_free 0.2385
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 5.10
_refine.ls_number_reflns_R_free 194
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] 1.2078
_refine.aniso_B[2][2] 1.2078
_refine.aniso_B[3][3] -2.4155
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] -0.0000
_refine.aniso_B[2][3] -0.0000
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_ksol 0.400
_refine.solvent_model_param_bsol 30.030
_refine.pdbx_solvent_vdw_probe_radii 1.00
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.73
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct SAD
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.00
_refine.pdbx_overall_phase_error 24.26
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 207
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 25
_refine_hist.number_atoms_total 232
_refine_hist.d_res_high 2.100
_refine_hist.d_res_low 55
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
f_bond_d 0.007 ? ? 232 'X-RAY DIFFRACTION' ?
f_angle_d 1.659 ? ? 356 'X-RAY DIFFRACTION' ?
f_dihedral_angle_d 39.746 ? ? 99 'X-RAY DIFFRACTION' ?
f_chiral_restr 0.098 ? ? 37 'X-RAY DIFFRACTION' ?
f_plane_restr 0.004 ? ? 10 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.d_res_high 2.1000
_refine_ls_shell.d_res_low 2.14
_refine_ls_shell.number_reflns_R_work 3610
_refine_ls_shell.R_factor_R_work 0.2324
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.2385
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 194
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_database_PDB_matrix.entry_id 4RIP
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4RIP
_struct.title 'BromoUracil substituted structure of intercalation-locked DNA tetraplex'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4RIP
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'BromoUracil, homoduplex, intercalation-locked DNA tetraplex, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4RIP
_struct_ref.pdbx_db_accession 4RIP
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4RIP
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 11
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4RIP
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 11
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 11
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_775 -x+2,-y+2,z -1.0000000000 0.0000000000 0.0000000000 26.4000000000 0.0000000000
-1.0000000000 0.0000000000 45.7261413198 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 9_765 -x+2,-x+y+1,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 39.6000000000 -0.8660254038
0.5000000000 0.0000000000 22.8630706599 0.0000000000 0.0000000000 -1.0000000000 55.4840000000
4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/3 0.5000000000 0.8660254038 0.0000000000 -13.2000000000 0.8660254038
-0.5000000000 0.0000000000 22.8630706599 0.0000000000 0.0000000000 -1.0000000000 55.4840000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DC 2 "O3'" ? ? ? 1_555 A BRU 3 P ? ? A DC 2 A BRU 3 1_555 ? ? ? ? ? ? ? 1.610 ? ?
covale2 covale both ? A BRU 3 "O3'" ? ? ? 1_555 A DC 4 P ? ? A BRU 3 A DC 4 1_555 ? ? ? ? ? ? ? 1.608 ? ?
covale3 covale both ? A DA 7 "O3'" ? ? ? 1_555 A BRU 8 P ? ? A DA 7 A BRU 8 1_555 ? ? ? ? ? ? ? 1.622 ? ?
covale4 covale both ? A BRU 8 "O3'" ? ? ? 1_555 A DG 9 P ? ? A BRU 8 A DG 9 1_555 ? ? ? ? ? ? ? 1.611 ? ?
hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DA 1 N7 ? ? A DA 1 A DA 1 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 A DA 1 N6 ? ? A DA 1 A DA 1 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog3 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DC 4 O2 ? ? A DC 4 A DC 4 4_775 ? ? ? ? ? ? TYPE_15_PAIR ? ? ?
hydrog4 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DC 4 N4 ? ? A DC 4 A DC 4 4_775 ? ? ? ? ? ? TYPE_15_PAIR ? ? ?
hydrog5 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 5 N3 ? ? A DG 5 A DG 5 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog6 hydrog ? ? A DG 5 N3 ? ? ? 1_555 A DG 5 N2 ? ? A DG 5 A DG 5 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog7 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 6 N3 ? ? A DG 6 A DG 6 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog8 hydrog ? ? A DG 6 N3 ? ? ? 1_555 A DG 6 N2 ? ? A DG 6 A DG 6 4_775 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog9 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DA 7 N7 ? ? A DA 7 A DA 7 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog10 hydrog ? ? A DA 7 N7 ? ? ? 1_555 A DA 7 N6 ? ? A DA 7 A DA 7 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog11 hydrog ? ? A BRU 8 N3 ? ? ? 1_555 A BRU 8 O4 ? ? A BRU 8 A BRU 8 4_775 ? ? ? ? ? ? TYPE_12_PAIR ? ? ?
hydrog12 hydrog ? ? A BRU 8 O4 ? ? ? 1_555 A BRU 8 N3 ? ? A BRU 8 A BRU 8 4_775 ? ? ? ? ? ? TYPE_12_PAIR ? ? ?
hydrog13 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DA 10 N7 ? ? A DA 10 A DA 10 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog14 hydrog ? ? A DA 10 N7 ? ? ? 1_555 A DA 10 N6 ? ? A DA 10 A DA 10 4_775 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 HOH
_pdbx_validate_symm_contact.auth_seq_id_1 125
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 125
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 4_765
_pdbx_validate_symm_contact.dist 1.96
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A BRU 3 A BRU 3 ? DU ?
2 A BRU 8 A BRU 8 ? DU ?
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 115 ? B HOH .
2 1 A HOH 121 ? B HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BRU N1 N N N 1
BRU C2 C N N 2
BRU N3 N N N 3
BRU C4 C N N 4
BRU C5 C N N 5
BRU C6 C N N 6
BRU O2 O N N 7
BRU O4 O N N 8
BRU BR BR N N 9
BRU "C1'" C N R 10
BRU "C2'" C N N 11
BRU "C3'" C N S 12
BRU "C4'" C N R 13
BRU "O3'" O N N 14
BRU "O4'" O N N 15
BRU "C5'" C N N 16
BRU "O5'" O N N 17
BRU P P N N 18
BRU OP1 O N N 19
BRU OP2 O N N 20
BRU OP3 O N N 21
BRU HN3 H N N 22
BRU H6 H N N 23
BRU "H1'" H N N 24
BRU "H2'" H N N 25
BRU "H2''" H N N 26
BRU "H3'" H N N 27
BRU "H4'" H N N 28
BRU "HO3'" H N N 29
BRU "H5'" H N N 30
BRU "H5''" H N N 31
BRU HOP2 H N N 32
BRU HOP3 H N N 33
DA OP3 O N N 34
DA P P N N 35
DA OP1 O N N 36
DA OP2 O N N 37
DA "O5'" O N N 38
DA "C5'" C N N 39
DA "C4'" C N R 40
DA "O4'" O N N 41
DA "C3'" C N S 42
DA "O3'" O N N 43
DA "C2'" C N N 44
DA "C1'" C N R 45
DA N9 N Y N 46
DA C8 C Y N 47
DA N7 N Y N 48
DA C5 C Y N 49
DA C6 C Y N 50
DA N6 N N N 51
DA N1 N Y N 52
DA C2 C Y N 53
DA N3 N Y N 54
DA C4 C Y N 55
DA HOP3 H N N 56
DA HOP2 H N N 57
DA "H5'" H N N 58
DA "H5''" H N N 59
DA "H4'" H N N 60
DA "H3'" H N N 61
DA "HO3'" H N N 62
DA "H2'" H N N 63
DA "H2''" H N N 64
DA "H1'" H N N 65
DA H8 H N N 66
DA H61 H N N 67
DA H62 H N N 68
DA H2 H N N 69
DC OP3 O N N 70
DC P P N N 71
DC OP1 O N N 72
DC OP2 O N N 73
DC "O5'" O N N 74
DC "C5'" C N N 75
DC "C4'" C N R 76
DC "O4'" O N N 77
DC "C3'" C N S 78
DC "O3'" O N N 79
DC "C2'" C N N 80
DC "C1'" C N R 81
DC N1 N N N 82
DC C2 C N N 83
DC O2 O N N 84
DC N3 N N N 85
DC C4 C N N 86
DC N4 N N N 87
DC C5 C N N 88
DC C6 C N N 89
DC HOP3 H N N 90
DC HOP2 H N N 91
DC "H5'" H N N 92
DC "H5''" H N N 93
DC "H4'" H N N 94
DC "H3'" H N N 95
DC "HO3'" H N N 96
DC "H2'" H N N 97
DC "H2''" H N N 98
DC "H1'" H N N 99
DC H41 H N N 100
DC H42 H N N 101
DC H5 H N N 102
DC H6 H N N 103
DG OP3 O N N 104
DG P P N N 105
DG OP1 O N N 106
DG OP2 O N N 107
DG "O5'" O N N 108
DG "C5'" C N N 109
DG "C4'" C N R 110
DG "O4'" O N N 111
DG "C3'" C N S 112
DG "O3'" O N N 113
DG "C2'" C N N 114
DG "C1'" C N R 115
DG N9 N Y N 116
DG C8 C Y N 117
DG N7 N Y N 118
DG C5 C Y N 119
DG C6 C N N 120
DG O6 O N N 121
DG N1 N N N 122
DG C2 C N N 123
DG N2 N N N 124
DG N3 N N N 125
DG C4 C Y N 126
DG HOP3 H N N 127
DG HOP2 H N N 128
DG "H5'" H N N 129
DG "H5''" H N N 130
DG "H4'" H N N 131
DG "H3'" H N N 132
DG "HO3'" H N N 133
DG "H2'" H N N 134
DG "H2''" H N N 135
DG "H1'" H N N 136
DG H8 H N N 137
DG H1 H N N 138
DG H21 H N N 139
DG H22 H N N 140
DT OP3 O N N 141
DT P P N N 142
DT OP1 O N N 143
DT OP2 O N N 144
DT "O5'" O N N 145
DT "C5'" C N N 146
DT "C4'" C N R 147
DT "O4'" O N N 148
DT "C3'" C N S 149
DT "O3'" O N N 150
DT "C2'" C N N 151
DT "C1'" C N R 152
DT N1 N N N 153
DT C2 C N N 154
DT O2 O N N 155
DT N3 N N N 156
DT C4 C N N 157
DT O4 O N N 158
DT C5 C N N 159
DT C7 C N N 160
DT C6 C N N 161
DT HOP3 H N N 162
DT HOP2 H N N 163
DT "H5'" H N N 164
DT "H5''" H N N 165
DT "H4'" H N N 166
DT "H3'" H N N 167
DT "HO3'" H N N 168
DT "H2'" H N N 169
DT "H2''" H N N 170
DT "H1'" H N N 171
DT H3 H N N 172
DT H71 H N N 173
DT H72 H N N 174
DT H73 H N N 175
DT H6 H N N 176
HOH O O N N 177
HOH H1 H N N 178
HOH H2 H N N 179
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BRU N1 C2 sing N N 1
BRU N1 C6 sing N N 2
BRU N1 "C1'" sing N N 3
BRU C2 N3 sing N N 4
BRU C2 O2 doub N N 5
BRU N3 C4 sing N N 6
BRU N3 HN3 sing N N 7
BRU C4 C5 sing N N 8
BRU C4 O4 doub N N 9
BRU C5 C6 doub N N 10
BRU C5 BR sing N N 11
BRU C6 H6 sing N N 12
BRU "C1'" "C2'" sing N N 13
BRU "C1'" "O4'" sing N N 14
BRU "C1'" "H1'" sing N N 15
BRU "C2'" "C3'" sing N N 16
BRU "C2'" "H2'" sing N N 17
BRU "C2'" "H2''" sing N N 18
BRU "C3'" "C4'" sing N N 19
BRU "C3'" "O3'" sing N N 20
BRU "C3'" "H3'" sing N N 21
BRU "C4'" "O4'" sing N N 22
BRU "C4'" "C5'" sing N N 23
BRU "C4'" "H4'" sing N N 24
BRU "O3'" "HO3'" sing N N 25
BRU "C5'" "O5'" sing N N 26
BRU "C5'" "H5'" sing N N 27
BRU "C5'" "H5''" sing N N 28
BRU "O5'" P sing N N 29
BRU P OP1 doub N N 30
BRU P OP2 sing N N 31
BRU P OP3 sing N N 32
BRU OP2 HOP2 sing N N 33
BRU OP3 HOP3 sing N N 34
DA OP3 P sing N N 35
DA OP3 HOP3 sing N N 36
DA P OP1 doub N N 37
DA P OP2 sing N N 38
DA P "O5'" sing N N 39
DA OP2 HOP2 sing N N 40
DA "O5'" "C5'" sing N N 41
DA "C5'" "C4'" sing N N 42
DA "C5'" "H5'" sing N N 43
DA "C5'" "H5''" sing N N 44
DA "C4'" "O4'" sing N N 45
DA "C4'" "C3'" sing N N 46
DA "C4'" "H4'" sing N N 47
DA "O4'" "C1'" sing N N 48
DA "C3'" "O3'" sing N N 49
DA "C3'" "C2'" sing N N 50
DA "C3'" "H3'" sing N N 51
DA "O3'" "HO3'" sing N N 52
DA "C2'" "C1'" sing N N 53
DA "C2'" "H2'" sing N N 54
DA "C2'" "H2''" sing N N 55
DA "C1'" N9 sing N N 56
DA "C1'" "H1'" sing N N 57
DA N9 C8 sing Y N 58
DA N9 C4 sing Y N 59
DA C8 N7 doub Y N 60
DA C8 H8 sing N N 61
DA N7 C5 sing Y N 62
DA C5 C6 sing Y N 63
DA C5 C4 doub Y N 64
DA C6 N6 sing N N 65
DA C6 N1 doub Y N 66
DA N6 H61 sing N N 67
DA N6 H62 sing N N 68
DA N1 C2 sing Y N 69
DA C2 N3 doub Y N 70
DA C2 H2 sing N N 71
DA N3 C4 sing Y N 72
DC OP3 P sing N N 73
DC OP3 HOP3 sing N N 74
DC P OP1 doub N N 75
DC P OP2 sing N N 76
DC P "O5'" sing N N 77
DC OP2 HOP2 sing N N 78
DC "O5'" "C5'" sing N N 79
DC "C5'" "C4'" sing N N 80
DC "C5'" "H5'" sing N N 81
DC "C5'" "H5''" sing N N 82
DC "C4'" "O4'" sing N N 83
DC "C4'" "C3'" sing N N 84
DC "C4'" "H4'" sing N N 85
DC "O4'" "C1'" sing N N 86
DC "C3'" "O3'" sing N N 87
DC "C3'" "C2'" sing N N 88
DC "C3'" "H3'" sing N N 89
DC "O3'" "HO3'" sing N N 90
DC "C2'" "C1'" sing N N 91
DC "C2'" "H2'" sing N N 92
DC "C2'" "H2''" sing N N 93
DC "C1'" N1 sing N N 94
DC "C1'" "H1'" sing N N 95
DC N1 C2 sing N N 96
DC N1 C6 sing N N 97
DC C2 O2 doub N N 98
DC C2 N3 sing N N 99
DC N3 C4 doub N N 100
DC C4 N4 sing N N 101
DC C4 C5 sing N N 102
DC N4 H41 sing N N 103
DC N4 H42 sing N N 104
DC C5 C6 doub N N 105
DC C5 H5 sing N N 106
DC C6 H6 sing N N 107
DG OP3 P sing N N 108
DG OP3 HOP3 sing N N 109
DG P OP1 doub N N 110
DG P OP2 sing N N 111
DG P "O5'" sing N N 112
DG OP2 HOP2 sing N N 113
DG "O5'" "C5'" sing N N 114
DG "C5'" "C4'" sing N N 115
DG "C5'" "H5'" sing N N 116
DG "C5'" "H5''" sing N N 117
DG "C4'" "O4'" sing N N 118
DG "C4'" "C3'" sing N N 119
DG "C4'" "H4'" sing N N 120
DG "O4'" "C1'" sing N N 121
DG "C3'" "O3'" sing N N 122
DG "C3'" "C2'" sing N N 123
DG "C3'" "H3'" sing N N 124
DG "O3'" "HO3'" sing N N 125
DG "C2'" "C1'" sing N N 126
DG "C2'" "H2'" sing N N 127
DG "C2'" "H2''" sing N N 128
DG "C1'" N9 sing N N 129
DG "C1'" "H1'" sing N N 130
DG N9 C8 sing Y N 131
DG N9 C4 sing Y N 132
DG C8 N7 doub Y N 133
DG C8 H8 sing N N 134
DG N7 C5 sing Y N 135
DG C5 C6 sing N N 136
DG C5 C4 doub Y N 137
DG C6 O6 doub N N 138
DG C6 N1 sing N N 139
DG N1 C2 sing N N 140
DG N1 H1 sing N N 141
DG C2 N2 sing N N 142
DG C2 N3 doub N N 143
DG N2 H21 sing N N 144
DG N2 H22 sing N N 145
DG N3 C4 sing N N 146
DT OP3 P sing N N 147
DT OP3 HOP3 sing N N 148
DT P OP1 doub N N 149
DT P OP2 sing N N 150
DT P "O5'" sing N N 151
DT OP2 HOP2 sing N N 152
DT "O5'" "C5'" sing N N 153
DT "C5'" "C4'" sing N N 154
DT "C5'" "H5'" sing N N 155
DT "C5'" "H5''" sing N N 156
DT "C4'" "O4'" sing N N 157
DT "C4'" "C3'" sing N N 158
DT "C4'" "H4'" sing N N 159
DT "O4'" "C1'" sing N N 160
DT "C3'" "O3'" sing N N 161
DT "C3'" "C2'" sing N N 162
DT "C3'" "H3'" sing N N 163
DT "O3'" "HO3'" sing N N 164
DT "C2'" "C1'" sing N N 165
DT "C2'" "H2'" sing N N 166
DT "C2'" "H2''" sing N N 167
DT "C1'" N1 sing N N 168
DT "C1'" "H1'" sing N N 169
DT N1 C2 sing N N 170
DT N1 C6 sing N N 171
DT C2 O2 doub N N 172
DT C2 N3 sing N N 173
DT N3 C4 sing N N 174
DT N3 H3 sing N N 175
DT C4 O4 doub N N 176
DT C4 C5 sing N N 177
DT C5 C7 sing N N 178
DT C5 C6 doub N N 179
DT C7 H71 sing N N 180
DT C7 H72 sing N N 181
DT C7 H73 sing N N 182
DT C6 H6 sing N N 183
HOH O H1 sing N N 184
HOH O H2 sing N N 185
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
4RIP 'double helix'
4RIP 'parallel strands'
4RIP 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DA 1 1_555 A DA 1 4_775 5.647 -5.121 0.000 8.518 -26.168 180.000 1 A_DA1:DA1_A A 1 ? A 1 ? 2 8
1 A DC 4 1_555 A DC 4 4_775 -1.833 -1.439 0.000 -0.422 4.449 -180.000 2 A_DC4:DC4_A A 4 ? A 4 ? 15 2
1 A DG 5 1_555 A DG 5 4_775 0.474 -6.955 0.000 22.991 -23.511 -180.000 3 A_DG5:DG5_A A 5 ? A 5 ? 4 12
1 A DG 6 1_555 A DG 6 4_775 3.176 8.064 0.000 -17.247 23.660 180.000 4 A_DG6:DG6_A A 6 ? A 6 ? 4 12
1 A DA 7 1_555 A DA 7 4_775 5.827 -5.288 0.000 31.485 -18.428 180.000 5 A_DA7:DA7_A A 7 ? A 7 ? 2 7
1 A BRU 8 1_555 A BRU 8 4_775 1.573 -2.307 0.000 9.571 -14.863 180.000 6 A_BRU8:BRU8_A A 8 ? A 8 ? 12 2
1 A DA 10 1_555 A DA 10 4_775 5.343 -5.560 0.000 14.878 -36.747 180.000 7 A_DA10:DA10_A A 10 ? A 10 ? 2 7
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 4 1_555 A DC 4 4_775 A DG 5 1_555 A DG 5 4_775 0.000 -0.895 2.715 0.000 0.000 31.980 1.354 -3.440 1.795 -29.571
38.573 31.980 1 AA_DC4DG5:DG5DC4_AA A 4 ? A 4 ? A 5 ? A 5 ?
1 A DG 5 1_555 A DG 5 4_775 A DG 6 1_555 A DG 6 4_775 0.000 -6.023 7.074 0.000 0.000 -159.900 -0.018 0.924 6.695 18.471
3.656 -159.900 2 AA_DG5DG6:DG6DG5_AA A 5 ? A 5 ? A 6 ? A 6 ?
1 A DG 6 1_555 A DG 6 4_775 A DA 7 1_555 A DA 7 4_775 0.000 0.000 4.429 0.000 0.000 -13.233 0.000 0.000 4.429 0.000
0.000 -13.233 3 AA_DG6DA7:DA7DG6_AA A 6 ? A 6 ? A 7 ? A 7 ?
1 A DA 7 1_555 A DA 7 4_775 A BRU 8 1_555 A BRU 8 4_775 0.000 0.000 3.422 0.000 0.000 51.986 0.000 0.000 3.422 0.000
0.000 51.986 4 AA_DA7BRU8:BRU8DA7_AA A 7 ? A 7 ? A 8 ? A 8 ?
1 A BRU 8 1_555 A BRU 8 4_775 A DA 10 1_555 A DA 10 4_775 0.000 0.000 7.448 0.000 0.000 66.151 0.000 0.000 7.448 0.000
0.000 66.151 5 AA_BRU8DA10:DA10BRU8_AA A 8 ? A 8 ? A 10 ? A 10 ?
#
_atom_sites.entry_id 4RIP
_atom_sites.fract_transf_matrix[1][1] 0.037879
_atom_sites.fract_transf_matrix[1][2] 0.021869
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.043739
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.006008
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BR
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DA A 1 1 ? 9.677 16.544 22.443 1.00 20.70 ? 1 DA A "O5'" 1
ATOM 2 C "C5'" . DA A 1 1 ? 9.474 16.733 21.056 1.00 21.55 ? 1 DA A "C5'" 1
ATOM 3 C "C4'" . DA A 1 1 ? 8.343 17.714 20.834 1.00 21.48 ? 1 DA A "C4'" 1
ATOM 4 O "O4'" . DA A 1 1 ? 8.834 19.076 21.002 1.00 19.32 ? 1 DA A "O4'" 1
ATOM 5 C "C3'" . DA A 1 1 ? 7.731 17.669 19.437 1.00 24.38 ? 1 DA A "C3'" 1
ATOM 6 O "O3'" . DA A 1 1 ? 6.373 18.042 19.539 1.00 26.14 ? 1 DA A "O3'" 1
ATOM 7 C "C2'" . DA A 1 1 ? 8.490 18.775 18.719 1.00 23.50 ? 1 DA A "C2'" 1
ATOM 8 C "C1'" . DA A 1 1 ? 8.553 19.823 19.836 1.00 21.09 ? 1 DA A "C1'" 1
ATOM 9 N N9 . DA A 1 1 ? 9.629 20.787 19.594 1.00 20.57 ? 1 DA A N9 1
ATOM 10 C C8 . DA A 1 1 ? 10.980 20.548 19.563 1.00 19.28 ? 1 DA A C8 1
ATOM 11 N N7 . DA A 1 1 ? 11.701 21.616 19.291 1.00 19.38 ? 1 DA A N7 1
ATOM 12 C C5 . DA A 1 1 ? 10.755 22.627 19.130 1.00 19.75 ? 1 DA A C5 1
ATOM 13 C C6 . DA A 1 1 ? 10.858 24.013 18.825 1.00 20.36 ? 1 DA A C6 1
ATOM 14 N N6 . DA A 1 1 ? 12.010 24.676 18.613 1.00 19.79 ? 1 DA A N6 1
ATOM 15 N N1 . DA A 1 1 ? 9.715 24.721 18.737 1.00 20.75 ? 1 DA A N1 1
ATOM 16 C C2 . DA A 1 1 ? 8.548 24.084 18.935 1.00 19.77 ? 1 DA A C2 1
ATOM 17 N N3 . DA A 1 1 ? 8.326 22.798 19.227 1.00 18.69 ? 1 DA A N3 1
ATOM 18 C C4 . DA A 1 1 ? 9.479 22.124 19.309 1.00 19.06 ? 1 DA A C4 1
ATOM 19 P P . DC A 1 2 ? 5.211 16.948 19.334 1.00 27.36 ? 2 DC A P 1
ATOM 20 O OP1 . DC A 1 2 ? 5.719 15.900 18.404 1.00 28.99 ? 2 DC A OP1 1
ATOM 21 O OP2 . DC A 1 2 ? 3.938 17.681 19.045 1.00 27.63 ? 2 DC A OP2 1
ATOM 22 O "O5'" . DC A 1 2 ? 5.120 16.228 20.766 1.00 26.06 ? 2 DC A "O5'" 1
ATOM 23 C "C5'" . DC A 1 2 ? 4.697 16.923 21.933 1.00 26.52 ? 2 DC A "C5'" 1
ATOM 24 C "C4'" . DC A 1 2 ? 4.403 15.847 22.964 1.00 27.98 ? 2 DC A "C4'" 1
ATOM 25 O "O4'" . DC A 1 2 ? 3.170 15.181 22.608 1.00 28.73 ? 2 DC A "O4'" 1
ATOM 26 C "C3'" . DC A 1 2 ? 5.441 14.720 23.067 1.00 26.70 ? 2 DC A "C3'" 1
ATOM 27 O "O3'" . DC A 1 2 ? 5.773 14.550 24.441 1.00 26.57 ? 2 DC A "O3'" 1
ATOM 28 C "C2'" . DC A 1 2 ? 4.774 13.476 22.482 1.00 25.45 ? 2 DC A "C2'" 1
ATOM 29 C "C1'" . DC A 1 2 ? 3.333 13.793 22.823 1.00 26.26 ? 2 DC A "C1'" 1
ATOM 30 N N1 . DC A 1 2 ? 2.326 13.129 21.962 1.00 27.29 ? 2 DC A N1 1
ATOM 31 C C2 . DC A 1 2 ? 1.128 12.785 22.600 1.00 25.76 ? 2 DC A C2 1
ATOM 32 O O2 . DC A 1 2 ? 1.010 13.049 23.810 1.00 25.20 ? 2 DC A O2 1
ATOM 33 N N3 . DC A 1 2 ? 0.153 12.183 21.877 1.00 26.23 ? 2 DC A N3 1
ATOM 34 C C4 . DC A 1 2 ? 0.361 11.940 20.575 1.00 25.38 ? 2 DC A C4 1
ATOM 35 N N4 . DC A 1 2 ? -0.642 11.336 19.919 1.00 26.21 ? 2 DC A N4 1
ATOM 36 C C5 . DC A 1 2 ? 1.576 12.290 19.900 1.00 23.09 ? 2 DC A C5 1
ATOM 37 C C6 . DC A 1 2 ? 2.535 12.886 20.625 1.00 24.82 ? 2 DC A C6 1
HETATM 38 N N1 . BRU A 1 3 ? 10.982 13.334 22.909 1.00 24.56 ? 3 BRU A N1 1
HETATM 39 C C2 . BRU A 1 3 ? 12.029 13.796 22.083 1.00 23.13 ? 3 BRU A C2 1
HETATM 40 N N3 . BRU A 1 3 ? 11.848 13.986 20.763 1.00 25.43 ? 3 BRU A N3 1
HETATM 41 C C4 . BRU A 1 3 ? 10.658 13.731 20.187 1.00 24.76 ? 3 BRU A C4 1
HETATM 42 C C5 . BRU A 1 3 ? 9.545 13.231 21.041 1.00 25.45 ? 3 BRU A C5 1
HETATM 43 C C6 . BRU A 1 3 ? 9.770 13.049 22.403 1.00 24.14 ? 3 BRU A C6 1
HETATM 44 O O2 . BRU A 1 3 ? 13.145 14.038 22.603 1.00 23.93 ? 3 BRU A O2 1
HETATM 45 O O4 . BRU A 1 3 ? 10.472 13.910 18.950 1.00 22.59 ? 3 BRU A O4 1
HETATM 46 BR BR . BRU A 1 3 ? 7.840 12.874 20.278 0.75 31.36 ? 3 BRU A BR 1
HETATM 47 C "C1'" . BRU A 1 3 ? 11.224 13.112 24.340 1.00 24.11 ? 3 BRU A "C1'" 1
HETATM 48 C "C2'" . BRU A 1 3 ? 11.129 14.385 25.174 1.00 23.17 ? 3 BRU A "C2'" 1
HETATM 49 C "C3'" . BRU A 1 3 ? 10.533 13.859 26.468 1.00 25.62 ? 3 BRU A "C3'" 1
HETATM 50 C "C4'" . BRU A 1 3 ? 9.710 12.641 26.084 1.00 25.78 ? 3 BRU A "C4'" 1
HETATM 51 O "O3'" . BRU A 1 3 ? 11.612 13.303 27.225 1.00 27.11 ? 3 BRU A "O3'" 1
HETATM 52 O "O4'" . BRU A 1 3 ? 10.197 12.226 24.810 1.00 23.50 ? 3 BRU A "O4'" 1
HETATM 53 C "C5'" . BRU A 1 3 ? 8.235 12.964 25.952 1.00 25.13 ? 3 BRU A "C5'" 1
HETATM 54 O "O5'" . BRU A 1 3 ? 8.184 13.961 24.932 1.00 27.59 ? 3 BRU A "O5'" 1
HETATM 55 P P . BRU A 1 3 ? 7.135 15.185 25.018 1.00 26.65 ? 3 BRU A P 1
HETATM 56 O OP1 . BRU A 1 3 ? 6.939 15.491 26.491 1.00 28.26 ? 3 BRU A OP1 1
HETATM 57 O OP2 . BRU A 1 3 ? 7.585 16.282 24.060 1.00 25.61 ? 3 BRU A OP2 1
ATOM 58 P P . DC A 1 4 ? 11.942 13.830 28.708 1.00 25.99 ? 4 DC A P 1
ATOM 59 O OP1 . DC A 1 4 ? 12.862 12.839 29.335 1.00 25.69 ? 4 DC A OP1 1
ATOM 60 O OP2 . DC A 1 4 ? 10.661 14.235 29.364 1.00 25.68 ? 4 DC A OP2 1
ATOM 61 O "O5'" . DC A 1 4 ? 12.764 15.178 28.451 1.00 22.62 ? 4 DC A "O5'" 1
ATOM 62 C "C5'" . DC A 1 4 ? 13.923 15.109 27.619 1.00 22.03 ? 4 DC A "C5'" 1
ATOM 63 C "C4'" . DC A 1 4 ? 14.923 16.126 28.133 1.00 21.58 ? 4 DC A "C4'" 1
ATOM 64 O "O4'" . DC A 1 4 ? 14.356 17.457 27.968 1.00 20.22 ? 4 DC A "O4'" 1
ATOM 65 C "C3'" . DC A 1 4 ? 15.295 16.024 29.610 1.00 21.20 ? 4 DC A "C3'" 1
ATOM 66 O "O3'" . DC A 1 4 ? 16.669 16.358 29.669 1.00 23.14 ? 4 DC A "O3'" 1
ATOM 67 C "C2'" . DC A 1 4 ? 14.434 17.110 30.251 1.00 19.60 ? 4 DC A "C2'" 1
ATOM 68 C "C1'" . DC A 1 4 ? 14.519 18.189 29.172 1.00 19.21 ? 4 DC A "C1'" 1
ATOM 69 N N1 . DC A 1 4 ? 13.436 19.217 29.219 1.00 18.03 ? 4 DC A N1 1
ATOM 70 C C2 . DC A 1 4 ? 13.766 20.568 29.287 1.00 17.42 ? 4 DC A C2 1
ATOM 71 O O2 . DC A 1 4 ? 14.955 20.922 29.316 1.00 18.20 ? 4 DC A O2 1
ATOM 72 N N3 . DC A 1 4 ? 12.763 21.474 29.323 1.00 19.38 ? 4 DC A N3 1
ATOM 73 C C4 . DC A 1 4 ? 11.478 21.091 29.300 1.00 19.80 ? 4 DC A C4 1
ATOM 74 N N4 . DC A 1 4 ? 10.547 22.067 29.353 1.00 17.47 ? 4 DC A N4 1
ATOM 75 C C5 . DC A 1 4 ? 11.115 19.705 29.237 1.00 18.15 ? 4 DC A C5 1
ATOM 76 C C6 . DC A 1 4 ? 12.120 18.821 29.195 1.00 18.65 ? 4 DC A C6 1
ATOM 77 P P . DG A 1 5 ? 17.557 15.963 30.951 1.00 21.70 ? 5 DG A P 1
ATOM 78 O OP1 . DG A 1 5 ? 18.992 16.008 30.546 1.00 22.69 ? 5 DG A OP1 1
ATOM 79 O OP2 . DG A 1 5 ? 16.989 14.717 31.539 1.00 23.85 ? 5 DG A OP2 1
ATOM 80 O "O5'" . DG A 1 5 ? 17.289 17.173 31.965 1.00 21.68 ? 5 DG A "O5'" 1
ATOM 81 C "C5'" . DG A 1 5 ? 17.660 18.524 31.612 1.00 19.61 ? 5 DG A "C5'" 1
ATOM 82 C "C4'" . DG A 1 5 ? 17.137 19.459 32.688 1.00 19.76 ? 5 DG A "C4'" 1
ATOM 83 O "O4'" . DG A 1 5 ? 15.708 19.642 32.506 1.00 20.35 ? 5 DG A "O4'" 1
ATOM 84 C "C3'" . DG A 1 5 ? 17.287 18.970 34.126 1.00 20.35 ? 5 DG A "C3'" 1
ATOM 85 O "O3'" . DG A 1 5 ? 17.581 20.112 34.933 1.00 22.38 ? 5 DG A "O3'" 1
ATOM 86 C "C2'" . DG A 1 5 ? 15.905 18.388 34.444 1.00 19.95 ? 5 DG A "C2'" 1
ATOM 87 C "C1'" . DG A 1 5 ? 15.037 19.423 33.736 1.00 19.95 ? 5 DG A "C1'" 1
ATOM 88 N N9 . DG A 1 5 ? 13.667 18.991 33.426 1.00 20.12 ? 5 DG A N9 1
ATOM 89 C C8 . DG A 1 5 ? 13.186 17.698 33.397 1.00 18.48 ? 5 DG A C8 1
ATOM 90 N N7 . DG A 1 5 ? 11.915 17.621 33.076 1.00 17.93 ? 5 DG A N7 1
ATOM 91 C C5 . DG A 1 5 ? 11.525 18.943 32.879 1.00 18.78 ? 5 DG A C5 1
ATOM 92 C C6 . DG A 1 5 ? 10.267 19.483 32.510 1.00 19.10 ? 5 DG A C6 1
ATOM 93 O O6 . DG A 1 5 ? 9.207 18.868 32.284 1.00 19.12 ? 5 DG A O6 1
ATOM 94 N N1 . DG A 1 5 ? 10.300 20.882 32.408 1.00 17.85 ? 5 DG A N1 1
ATOM 95 C C2 . DG A 1 5 ? 11.426 21.652 32.636 1.00 18.47 ? 5 DG A C2 1
ATOM 96 N N2 . DG A 1 5 ? 11.295 22.986 32.501 1.00 18.60 ? 5 DG A N2 1
ATOM 97 N N3 . DG A 1 5 ? 12.614 21.152 32.977 1.00 19.19 ? 5 DG A N3 1
ATOM 98 C C4 . DG A 1 5 ? 12.592 19.800 33.082 1.00 18.72 ? 5 DG A C4 1
ATOM 99 P P . DG A 1 6 ? 18.249 19.930 36.395 1.00 22.00 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 18.487 21.285 36.958 1.00 21.28 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 19.364 18.950 36.276 1.00 20.37 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 17.084 19.230 37.244 1.00 24.59 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 17.354 18.411 38.365 1.00 23.74 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 16.851 19.137 39.602 1.00 27.01 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 15.449 19.485 39.458 1.00 26.83 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 16.936 18.315 40.876 1.00 28.44 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 17.420 19.165 41.901 1.00 35.28 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 15.493 17.872 41.122 1.00 26.31 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 14.748 19.107 40.631 1.00 25.84 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 13.346 18.851 40.291 1.00 23.90 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 12.758 17.609 40.175 1.00 22.28 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 11.490 17.672 39.862 1.00 22.67 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 11.218 19.044 39.768 1.00 22.87 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 10.015 19.733 39.455 1.00 22.25 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 8.893 19.271 39.187 1.00 22.32 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 10.188 21.115 39.463 1.00 22.92 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 11.369 21.764 39.742 1.00 22.93 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 11.332 23.114 39.702 1.00 24.47 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 12.502 21.133 40.038 1.00 21.73 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 12.354 19.783 40.032 1.00 22.82 ? 6 DG A C4 1
ATOM 121 P P . DA A 1 7 ? 18.502 18.619 42.967 1.00 38.11 ? 7 DA A P 1
ATOM 122 O OP1 . DA A 1 7 ? 19.336 17.583 42.283 1.00 32.99 ? 7 DA A OP1 1
ATOM 123 O OP2 . DA A 1 7 ? 17.774 18.249 44.210 1.00 36.38 ? 7 DA A OP2 1
ATOM 124 O "O5'" . DA A 1 7 ? 19.369 19.925 43.314 1.00 36.07 ? 7 DA A "O5'" 1
ATOM 125 C "C5'" . DA A 1 7 ? 20.352 20.377 42.389 1.00 34.56 ? 7 DA A "C5'" 1
ATOM 126 C "C4'" . DA A 1 7 ? 20.217 21.873 42.237 1.00 35.20 ? 7 DA A "C4'" 1
ATOM 127 O "O4'" . DA A 1 7 ? 18.879 22.166 41.789 1.00 33.00 ? 7 DA A "O4'" 1
ATOM 128 C "C3'" . DA A 1 7 ? 20.372 22.719 43.498 1.00 38.35 ? 7 DA A "C3'" 1
ATOM 129 O "O3'" . DA A 1 7 ? 21.782 22.912 43.666 1.00 43.22 ? 7 DA A "O3'" 1
ATOM 130 C "C2'" . DA A 1 7 ? 19.682 24.012 43.062 1.00 37.17 ? 7 DA A "C2'" 1
ATOM 131 C "C1'" . DA A 1 7 ? 18.631 23.530 42.076 1.00 31.76 ? 7 DA A "C1'" 1
ATOM 132 N N9 . DA A 1 7 ? 17.253 23.666 42.542 1.00 31.51 ? 7 DA A N9 1
ATOM 133 C C8 . DA A 1 7 ? 16.340 22.678 42.819 1.00 30.91 ? 7 DA A C8 1
ATOM 134 N N7 . DA A 1 7 ? 15.166 23.139 43.198 1.00 29.95 ? 7 DA A N7 1
ATOM 135 C C5 . DA A 1 7 ? 15.333 24.517 43.161 1.00 28.29 ? 7 DA A C5 1
ATOM 136 C C6 . DA A 1 7 ? 14.470 25.583 43.447 1.00 28.18 ? 7 DA A C6 1
ATOM 137 N N6 . DA A 1 7 ? 13.203 25.398 43.843 1.00 29.06 ? 7 DA A N6 1
ATOM 138 N N1 . DA A 1 7 ? 14.952 26.838 43.307 1.00 27.35 ? 7 DA A N1 1
ATOM 139 C C2 . DA A 1 7 ? 16.218 27.010 42.907 1.00 26.01 ? 7 DA A C2 1
ATOM 140 N N3 . DA A 1 7 ? 17.123 26.083 42.608 1.00 29.04 ? 7 DA A N3 1
ATOM 141 C C4 . DA A 1 7 ? 16.607 24.857 42.760 1.00 28.49 ? 7 DA A C4 1
HETATM 142 N N1 . BRU A 1 8 ? 17.034 24.656 46.675 1.00 37.45 ? 8 BRU A N1 1
HETATM 143 C C2 . BRU A 1 8 ? 15.641 24.882 46.699 1.00 34.88 ? 8 BRU A C2 1
HETATM 144 N N3 . BRU A 1 8 ? 14.773 23.867 46.713 1.00 35.32 ? 8 BRU A N3 1
HETATM 145 C C4 . BRU A 1 8 ? 15.217 22.604 46.701 1.00 36.65 ? 8 BRU A C4 1
HETATM 146 C C5 . BRU A 1 8 ? 16.681 22.348 46.677 1.00 37.05 ? 8 BRU A C5 1
HETATM 147 C C6 . BRU A 1 8 ? 17.552 23.422 46.666 1.00 38.04 ? 8 BRU A C6 1
HETATM 148 O O2 . BRU A 1 8 ? 15.214 26.059 46.707 1.00 35.12 ? 8 BRU A O2 1
HETATM 149 O O4 . BRU A 1 8 ? 14.408 21.645 46.711 1.00 37.37 ? 8 BRU A O4 1
HETATM 150 BR BR . BRU A 1 8 ? 17.351 20.586 46.666 0.50 39.26 ? 8 BRU A BR 1
HETATM 151 C "C1'" . BRU A 1 8 ? 17.916 25.819 46.667 1.00 39.17 ? 8 BRU A "C1'" 1
HETATM 152 C "C2'" . BRU A 1 8 ? 18.745 25.893 47.945 1.00 42.58 ? 8 BRU A "C2'" 1
HETATM 153 C "C3'" . BRU A 1 8 ? 19.896 26.778 47.505 1.00 44.30 ? 8 BRU A "C3'" 1
HETATM 154 C "C4'" . BRU A 1 8 ? 19.999 26.563 45.999 1.00 41.47 ? 8 BRU A "C4'" 1
HETATM 155 O "O3'" . BRU A 1 8 ? 19.539 28.153 47.685 1.00 47.73 ? 8 BRU A "O3'" 1
HETATM 156 O "O4'" . BRU A 1 8 ? 18.879 25.755 45.613 1.00 37.92 ? 8 BRU A "O4'" 1
HETATM 157 C "C5'" . BRU A 1 8 ? 21.303 25.900 45.592 1.00 39.85 ? 8 BRU A "C5'" 1
HETATM 158 O "O5'" . BRU A 1 8 ? 21.144 24.483 45.582 1.00 40.02 ? 8 BRU A "O5'" 1
HETATM 159 P P . BRU A 1 8 ? 22.377 23.624 44.996 1.00 49.42 ? 8 BRU A P 1
HETATM 160 O OP1 . BRU A 1 8 ? 23.437 24.624 44.548 1.00 49.01 ? 8 BRU A OP1 1
HETATM 161 O OP2 . BRU A 1 8 ? 22.700 22.539 46.015 1.00 45.27 ? 8 BRU A OP2 1
ATOM 162 P P . DG A 1 9 ? 19.604 28.833 49.144 1.00 53.46 ? 9 DG A P 1
ATOM 163 O OP1 . DG A 1 9 ? 19.405 30.297 48.970 1.00 48.50 ? 9 DG A OP1 1
ATOM 164 O OP2 . DG A 1 9 ? 20.820 28.317 49.832 1.00 48.56 ? 9 DG A OP2 1
ATOM 165 O "O5'" . DG A 1 9 ? 18.314 28.240 49.901 1.00 45.42 ? 9 DG A "O5'" 1
ATOM 166 C "C5'" . DG A 1 9 ? 16.998 28.514 49.395 1.00 44.57 ? 9 DG A "C5'" 1
ATOM 167 C "C4'" . DG A 1 9 ? 15.946 27.708 50.141 1.00 45.21 ? 9 DG A "C4'" 1
ATOM 168 O "O4'" . DG A 1 9 ? 16.084 26.301 49.848 1.00 44.09 ? 9 DG A "O4'" 1
ATOM 169 C "C3'" . DG A 1 9 ? 16.012 27.829 51.664 1.00 49.00 ? 9 DG A "C3'" 1
ATOM 170 O "O3'" . DG A 1 9 ? 14.734 28.129 52.195 1.00 51.11 ? 9 DG A "O3'" 1
ATOM 171 C "C2'" . DG A 1 9 ? 16.499 26.484 52.171 1.00 45.18 ? 9 DG A "C2'" 1
ATOM 172 C "C1'" . DG A 1 9 ? 16.019 25.574 51.055 1.00 45.92 ? 9 DG A "C1'" 1
ATOM 173 N N9 . DG A 1 9 ? 16.907 24.438 50.938 1.00 46.18 ? 9 DG A N9 1
ATOM 174 C C8 . DG A 1 9 ? 18.273 24.426 51.134 1.00 47.87 ? 9 DG A C8 1
ATOM 175 N N7 . DG A 1 9 ? 18.802 23.242 50.964 1.00 48.31 ? 9 DG A N7 1
ATOM 176 C C5 . DG A 1 9 ? 17.708 22.435 50.640 1.00 46.48 ? 9 DG A C5 1
ATOM 177 C C6 . DG A 1 9 ? 17.647 21.053 50.343 1.00 48.06 ? 9 DG A C6 1
ATOM 178 O O6 . DG A 1 9 ? 18.595 20.243 50.313 1.00 51.27 ? 9 DG A O6 1
ATOM 179 N N1 . DG A 1 9 ? 16.330 20.642 50.067 1.00 45.79 ? 9 DG A N1 1
ATOM 180 C C2 . DG A 1 9 ? 15.209 21.456 50.074 1.00 42.55 ? 9 DG A C2 1
ATOM 181 N N2 . DG A 1 9 ? 14.025 20.878 49.788 1.00 40.13 ? 9 DG A N2 1
ATOM 182 N N3 . DG A 1 9 ? 15.259 22.754 50.350 1.00 43.09 ? 9 DG A N3 1
ATOM 183 C C4 . DG A 1 9 ? 16.531 23.159 50.619 1.00 44.68 ? 9 DG A C4 1
ATOM 184 P P . DA A 1 10 ? 14.523 29.481 53.036 1.00 57.52 ? 10 DA A P 1
ATOM 185 O OP1 . DA A 1 10 ? 15.557 30.462 52.596 1.00 51.66 ? 10 DA A OP1 1
ATOM 186 O OP2 . DA A 1 10 ? 14.408 29.107 54.471 1.00 53.50 ? 10 DA A OP2 1
ATOM 187 O "O5'" . DA A 1 10 ? 13.129 30.038 52.499 1.00 53.53 ? 10 DA A "O5'" 1
ATOM 188 C "C5'" . DA A 1 10 ? 11.992 29.775 53.264 1.00 53.87 ? 10 DA A "C5'" 1
ATOM 189 C "C4'" . DA A 1 10 ? 10.835 29.572 52.327 1.00 53.06 ? 10 DA A "C4'" 1
ATOM 190 O "O4'" . DA A 1 10 ? 10.917 28.233 51.792 1.00 48.11 ? 10 DA A "O4'" 1
ATOM 191 C "C3'" . DA A 1 10 ? 9.496 29.663 53.034 1.00 54.03 ? 10 DA A "C3'" 1
ATOM 192 O "O3'" . DA A 1 10 ? 8.514 30.118 52.114 1.00 55.74 ? 10 DA A "O3'" 1
ATOM 193 C "C2'" . DA A 1 10 ? 9.274 28.235 53.526 1.00 51.80 ? 10 DA A "C2'" 1
ATOM 194 C "C1'" . DA A 1 10 ? 9.932 27.430 52.413 1.00 47.93 ? 10 DA A "C1'" 1
ATOM 195 N N9 . DA A 1 10 ? 10.585 26.197 52.838 1.00 48.81 ? 10 DA A N9 1
ATOM 196 C C8 . DA A 1 10 ? 11.926 25.909 52.810 1.00 47.93 ? 10 DA A C8 1
ATOM 197 N N7 . DA A 1 10 ? 12.205 24.692 53.233 1.00 45.83 ? 10 DA A N7 1
ATOM 198 C C5 . DA A 1 10 ? 10.967 24.147 53.559 1.00 45.24 ? 10 DA A C5 1
ATOM 199 C C6 . DA A 1 10 ? 10.556 22.889 54.067 1.00 45.76 ? 10 DA A C6 1
ATOM 200 N N6 . DA A 1 10 ? 11.392 21.886 54.355 1.00 46.09 ? 10 DA A N6 1
ATOM 201 N N1 . DA A 1 10 ? 9.232 22.685 54.274 1.00 47.02 ? 10 DA A N1 1
ATOM 202 C C2 . DA A 1 10 ? 8.379 23.681 53.991 1.00 48.42 ? 10 DA A C2 1
ATOM 203 N N3 . DA A 1 10 ? 8.641 24.903 53.510 1.00 48.56 ? 10 DA A N3 1
ATOM 204 C C4 . DA A 1 10 ? 9.961 25.069 53.316 1.00 47.18 ? 10 DA A C4 1
ATOM 205 P P . DT A 1 11 ? 7.768 31.516 52.367 1.00 61.40 ? 11 DT A P 1
ATOM 206 O OP1 . DT A 1 11 ? 8.786 32.505 52.840 1.00 53.67 ? 11 DT A OP1 1
ATOM 207 O OP2 . DT A 1 11 ? 6.549 31.239 53.173 1.00 60.16 ? 11 DT A OP2 1
HETATM 208 O O . HOH B 2 . ? 12.110 17.705 26.115 1.00 17.34 ? 101 HOH A O 1
HETATM 209 O O . HOH B 2 . ? 10.946 18.806 23.740 1.00 17.30 ? 102 HOH A O 1
HETATM 210 O O . HOH B 2 . ? 6.885 19.550 31.140 1.00 18.84 ? 103 HOH A O 1
HETATM 211 O O . HOH B 2 . ? 18.000 22.549 38.935 1.00 24.64 ? 104 HOH A O 1
HETATM 212 O O . HOH B 2 . ? 8.018 20.739 28.857 1.00 20.40 ? 105 HOH A O 1
HETATM 213 O O . HOH B 2 . ? 21.895 15.782 31.282 1.00 26.31 ? 106 HOH A O 1
HETATM 214 O O . HOH B 2 . ? 8.437 27.114 17.873 1.00 21.89 ? 107 HOH A O 1
HETATM 215 O O . HOH B 2 . ? 19.416 14.877 28.423 1.00 24.94 ? 108 HOH A O 1
HETATM 216 O O . HOH B 2 . ? 4.644 13.125 18.495 1.00 28.25 ? 109 HOH A O 1
HETATM 217 O O . HOH B 2 . ? 9.671 16.500 30.174 1.00 26.13 ? 110 HOH A O 1
HETATM 218 O O . HOH B 2 . ? 15.380 18.687 48.281 1.00 43.12 ? 111 HOH A O 1
HETATM 219 O O . HOH B 2 . ? 0.880 16.128 21.639 1.00 32.28 ? 112 HOH A O 1
HETATM 220 O O . HOH B 2 . ? 7.635 15.674 16.343 1.00 32.96 ? 113 HOH A O 1
HETATM 221 O O . HOH B 2 . ? 10.306 15.739 16.755 1.00 31.10 ? 114 HOH A O 1
HETATM 222 O O . HOH B 2 . ? 6.600 11.431 17.515 0.50 29.96 ? 115 HOH A O 1
HETATM 223 O O . HOH B 2 . ? 8.141 29.290 19.559 1.00 27.10 ? 116 HOH A O 1
HETATM 224 O O . HOH B 2 . ? 10.017 16.902 27.660 1.00 25.47 ? 117 HOH A O 1
HETATM 225 O O . HOH B 2 . ? 22.657 13.770 31.720 1.00 32.11 ? 118 HOH A O 1
HETATM 226 O O . HOH B 2 . ? 5.955 16.839 30.470 1.00 35.01 ? 119 HOH A O 1
HETATM 227 O O . HOH B 2 . ? 19.179 16.287 36.272 1.00 27.84 ? 120 HOH A O 1
HETATM 228 O O . HOH B 2 . ? 15.400 26.673 55.484 0.50 48.25 ? 121 HOH A O 1
HETATM 229 O O . HOH B 2 . ? 15.204 14.668 33.374 1.00 26.49 ? 122 HOH A O 1
HETATM 230 O O . HOH B 2 . ? 15.206 18.915 44.748 1.00 36.85 ? 123 HOH A O 1
HETATM 231 O O . HOH B 2 . ? 8.875 12.844 29.550 1.00 35.30 ? 124 HOH A O 1
HETATM 232 O O . HOH B 2 . ? 20.289 12.278 29.283 1.00 34.03 ? 125 HOH A O 1
#