data_4RIM
#
_entry.id 4RIM
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4RIM pdb_00004rim 10.2210/pdb4rim/pdb
NDB NA3216 ? ?
RCSB RCSB087391 ? ?
WWPDB D_1000087391 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-02-11
2 'Structure model' 1 1 2015-02-25
3 'Structure model' 1 2 2015-03-04
4 'Structure model' 1 3 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Derived calculations'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4RIM
_pdbx_database_status.recvd_initial_deposition_date 2014-10-06
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 4RIP
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Tripathi, S.K.' 1
'Zhang, D.' 2
'Paukstelis, P.' 3
#
_citation.id primary
_citation.title 'An intercalation-locked parallel-stranded DNA tetraplex.'
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_volume 43
_citation.page_first 1937
_citation.page_last 1944
_citation.year 2015
_citation.journal_id_ASTM NARHAD
_citation.country UK
_citation.journal_id_ISSN 0305-1048
_citation.journal_id_CSD 0389
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 25628357
_citation.pdbx_database_id_DOI 10.1093/nar/gkv033
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tripathi, S.' 1 ?
primary 'Zhang, D.' 2 ?
primary 'Paukstelis, P.J.' 3 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description
;DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*TP*GP*AP*T)-3')
;
_entity.formula_weight 3373.222
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DT)(DC)(DG)(DG)(DA)(DT)(DG)(DA)(DT)'
_entity_poly.pdbx_seq_one_letter_code_can ACTCGGATGAT
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DA n
1 2 DC n
1 3 DT n
1 4 DC n
1 5 DG n
1 6 DG n
1 7 DA n
1 8 DT n
1 9 DG n
1 10 DA n
1 11 DT n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DA 1 1 1 DA DA A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 DT 3 3 3 DT DT A . n
A 1 4 DC 4 4 4 DC DC A . n
A 1 5 DG 5 5 5 DG DG A . n
A 1 6 DG 6 6 6 DG DG A . n
A 1 7 DA 7 7 7 DA DA A . n
A 1 8 DT 8 8 8 DT DT A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DA 10 10 10 DA DA A . n
A 1 11 DT 11 11 11 DT DT A . n
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A DC 2 ? N1 ? A DC 2 N1
2 1 Y 1 A DC 2 ? C2 ? A DC 2 C2
3 1 Y 1 A DC 2 ? O2 ? A DC 2 O2
4 1 Y 1 A DC 2 ? N3 ? A DC 2 N3
5 1 Y 1 A DC 2 ? C4 ? A DC 2 C4
6 1 Y 1 A DC 2 ? N4 ? A DC 2 N4
7 1 Y 1 A DC 2 ? C5 ? A DC 2 C5
8 1 Y 1 A DC 2 ? C6 ? A DC 2 C6
9 1 Y 1 A DT 11 ? "O5'" ? A DT 11 "O5'"
10 1 Y 1 A DT 11 ? "C5'" ? A DT 11 "C5'"
11 1 Y 1 A DT 11 ? "C4'" ? A DT 11 "C4'"
12 1 Y 1 A DT 11 ? "O4'" ? A DT 11 "O4'"
13 1 Y 1 A DT 11 ? "C3'" ? A DT 11 "C3'"
14 1 Y 1 A DT 11 ? "O3'" ? A DT 11 "O3'"
15 1 Y 1 A DT 11 ? "C2'" ? A DT 11 "C2'"
16 1 Y 1 A DT 11 ? "C1'" ? A DT 11 "C1'"
17 1 Y 1 A DT 11 ? N1 ? A DT 11 N1
18 1 Y 1 A DT 11 ? C2 ? A DT 11 C2
19 1 Y 1 A DT 11 ? O2 ? A DT 11 O2
20 1 Y 1 A DT 11 ? N3 ? A DT 11 N3
21 1 Y 1 A DT 11 ? C4 ? A DT 11 C4
22 1 Y 1 A DT 11 ? O4 ? A DT 11 O4
23 1 Y 1 A DT 11 ? C5 ? A DT 11 C5
24 1 Y 1 A DT 11 ? C7 ? A DT 11 C7
25 1 Y 1 A DT 11 ? C6 ? A DT 11 C6
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CBF1.3 'data collection' . ? 1
PHASER phasing . ? 2
REFMAC refinement 5.8.0085 ? 3
MOSFLM 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 4RIM
_cell.length_a 25.310
_cell.length_b 25.310
_cell.length_c 167.832
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4RIM
_symmetry.space_group_name_H-M 'P 62 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 180
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4RIM
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.30
_exptl_crystal.density_percent_sol 46.53
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 300
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.5
_exptl_crystal_grow.pdbx_details '100 mM BaCl2, 20% MPD, 30 mM NaCaco pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 300K'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector PIXEL
_diffrn_detector.type 'PSI PILATUS 6M'
_diffrn_detector.pdbx_collection_date 2014-06-30
_diffrn_detector.details mirror
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9792
#
_reflns.entry_id 4RIM
_reflns.observed_criterion_sigma_I 3.0
_reflns.observed_criterion_sigma_F 2.0
_reflns.d_resolution_low 55.94
_reflns.d_resolution_high 2.30
_reflns.number_obs 1595
_reflns.percent_possible_obs 99
_reflns.pdbx_Rmerge_I_obs 0.076
_reflns.pdbx_Rsym_value 0.076
_reflns.pdbx_netI_over_sigmaI 2.2
_reflns.B_iso_Wilson_estimate 40
_reflns.pdbx_redundancy 7.7
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.number_all ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.30
_reflns_shell.d_res_low 2.36
_reflns_shell.percent_possible_all 99
_reflns_shell.Rmerge_I_obs 0.076
_reflns_shell.pdbx_Rsym_value 0.487
_reflns_shell.meanI_over_sigI_obs 1.4
_reflns_shell.pdbx_redundancy 8.2
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 378
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4RIM
_refine.ls_number_reflns_obs 1595
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 50
_refine.ls_d_res_high 2.30
_refine.ls_percent_reflns_obs 99.77
_refine.ls_R_factor_obs 0.30146
_refine.ls_R_factor_R_work 0.29906
_refine.ls_R_factor_R_free 0.30173
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 8.9
_refine.ls_number_reflns_R_free 156
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.922
_refine.correlation_coeff_Fo_to_Fc_free 0.902
_refine.B_iso_mean 59.175
_refine.aniso_B[1][1] 1.81
_refine.aniso_B[2][2] 1.81
_refine.aniso_B[3][3] -5.88
_refine.aniso_B[1][2] 0.91
_refine.aniso_B[1][3] -0.00
_refine.aniso_B[2][3] -0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.00
_refine.pdbx_solvent_ion_probe_radii 0.90
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.358
_refine.pdbx_overall_ESU_R_Free 0.251
_refine.overall_SU_ML 0.149
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 13.738
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.ls_R_factor_all ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 199
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 199
_refine_hist.d_res_high 2.30
_refine_hist.d_res_low 50
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 0.007 0.011 ? 223 ? 'X-RAY DIFFRACTION'
r_bond_other_d 0.003 0.020 ? 109 ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 1.216 1.178 ? 342 ? 'X-RAY DIFFRACTION'
r_angle_other_deg 1.853 3.000 ? 259 ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_chiral_restr 0.105 0.200 ? 29 ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 0.013 0.020 ? 110 ? 'X-RAY DIFFRACTION'
r_gen_planes_other 0.002 0.020 ? 44 ? 'X-RAY DIFFRACTION'
r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scbond_it 2.078 4.927 ? 221 ? 'X-RAY DIFFRACTION'
r_scbond_other 2.081 4.906 ? 220 ? 'X-RAY DIFFRACTION'
r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scangle_other 3.618 7.368 ? 342 ? 'X-RAY DIFFRACTION'
r_long_range_B_refined 4.284 47.820 ? 283 ? 'X-RAY DIFFRACTION'
r_long_range_B_other 4.276 47.801 ? 284 ? 'X-RAY DIFFRACTION'
r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.300
_refine_ls_shell.d_res_low 2.360
_refine_ls_shell.number_reflns_R_work 99
_refine_ls_shell.R_factor_R_work 0.315
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.439
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 7
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 4RIM
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4RIM
_struct.title 'Native structure of intercalation-locked DNA tetraplex'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4RIM
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DNA, Homo-duplex, Intercalation-locked DNA tetraplex'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4RIM
_struct_ref.pdbx_db_accession 4RIM
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4RIM
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 11
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4RIM
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 11
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 11
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
-1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038
0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -55.9440000000
4 'crystal symmetry operation' 10_554 -y,-x,-z-1/3 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038
-0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -55.9440000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DA 1 N7 ? ? A DA 1 A DA 1 4_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 A DA 1 N6 ? ? A DA 1 A DA 1 4_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog3 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DC 4 N4 ? ? A DC 4 A DC 4 4_555 ? ? ? ? ? ? TYPE_14_PAIR ? ? ?
hydrog4 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DC 4 N3 ? ? A DC 4 A DC 4 4_555 ? ? ? ? ? ? TYPE_14_PAIR ? ? ?
hydrog5 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 5 N3 ? ? A DG 5 A DG 5 4_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog6 hydrog ? ? A DG 5 N3 ? ? ? 1_555 A DG 5 N2 ? ? A DG 5 A DG 5 4_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog7 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 6 N3 ? ? A DG 6 A DG 6 4_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog8 hydrog ? ? A DG 6 N3 ? ? ? 1_555 A DG 6 N2 ? ? A DG 6 A DG 6 4_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog9 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DA 7 N7 ? ? A DA 7 A DA 7 4_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog10 hydrog ? ? A DA 7 N7 ? ? ? 1_555 A DA 7 N6 ? ? A DA 7 A DA 7 4_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog11 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DT 8 O4 ? ? A DT 8 A DT 8 4_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ?
hydrog12 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DT 8 N3 ? ? A DT 8 A DT 8 4_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ?
hydrog13 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 9 N3 ? ? A DG 9 A DG 9 4_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog14 hydrog ? ? A DG 9 N3 ? ? ? 1_555 A DG 9 N2 ? ? A DG 9 A DG 9 4_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog15 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DA 10 N7 ? ? A DA 10 A DA 10 4_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
hydrog16 hydrog ? ? A DA 10 N7 ? ? ? 1_555 A DA 10 N6 ? ? A DA 10 A DA 10 4_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls.id 1
_pdbx_refine_tls.details ?
_pdbx_refine_tls.method refined
_pdbx_refine_tls.origin_x 0.8750
_pdbx_refine_tls.origin_y -1.5990
_pdbx_refine_tls.origin_z -18.3890
_pdbx_refine_tls.T[1][1] 0.0941
_pdbx_refine_tls.T[2][2] 0.0228
_pdbx_refine_tls.T[3][3] 0.0661
_pdbx_refine_tls.T[1][2] -0.0160
_pdbx_refine_tls.T[1][3] -0.0141
_pdbx_refine_tls.T[2][3] 0.0180
_pdbx_refine_tls.L[1][1] 1.4000
_pdbx_refine_tls.L[2][2] 0.7594
_pdbx_refine_tls.L[3][3] 9.1910
_pdbx_refine_tls.L[1][2] -0.4234
_pdbx_refine_tls.L[1][3] -0.1694
_pdbx_refine_tls.L[2][3] 0.9384
_pdbx_refine_tls.S[1][1] -0.0376
_pdbx_refine_tls.S[1][2] -0.1442
_pdbx_refine_tls.S[1][3] -0.2257
_pdbx_refine_tls.S[2][1] 0.1493
_pdbx_refine_tls.S[2][2] 0.0530
_pdbx_refine_tls.S[2][3] -0.0611
_pdbx_refine_tls.S[3][1] 0.2519
_pdbx_refine_tls.S[3][2] -0.0196
_pdbx_refine_tls.S[3][3] -0.0155
#
_pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine_tls_group.id 1
_pdbx_refine_tls_group.refine_tls_id 1
_pdbx_refine_tls_group.beg_auth_asym_id A
_pdbx_refine_tls_group.beg_auth_seq_id 1
_pdbx_refine_tls_group.beg_label_asym_id ?
_pdbx_refine_tls_group.beg_label_seq_id ?
_pdbx_refine_tls_group.end_auth_asym_id A
_pdbx_refine_tls_group.end_auth_seq_id 11
_pdbx_refine_tls_group.end_label_asym_id ?
_pdbx_refine_tls_group.end_label_seq_id ?
_pdbx_refine_tls_group.selection ?
_pdbx_refine_tls_group.selection_details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
4RIM 'double helix'
4RIM 'parallel strands'
4RIM 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DA 1 1_555 A DA 1 4_555 5.748 -4.958 0.000 14.890 -23.796 180.000 1 A_DA1:DA1_A A 1 ? A 1 ? 2 7
1 A DC 4 1_555 A DC 4 4_555 2.101 1.173 0.000 -0.256 -2.575 180.000 2 A_DC4:DC4_A A 4 ? A 4 ? 14 2
1 A DG 5 1_555 A DG 5 4_555 -8.467 -0.537 0.000 -18.456 -20.315 -180.000 3 A_DG5:DG5_A A 5 ? A 5 ? 4 12
1 A DG 6 1_555 A DG 6 4_555 -7.339 -0.261 0.000 -12.111 -23.545 -180.000 4 A_DG6:DG6_A A 6 ? A 6 ? 4 12
1 A DA 7 1_555 A DA 7 4_555 -5.889 5.058 0.000 -26.287 14.455 -180.000 5 A_DA7:DA7_A A 7 ? A 7 ? 2 7
1 A DT 8 1_555 A DT 8 4_555 0.403 1.375 0.000 0.730 -7.986 -180.000 6 A_DT8:DT8_A A 8 ? A 8 ? 12 2
1 A DG 9 1_555 A DG 9 4_555 3.537 8.080 0.000 6.322 31.566 180.000 7 A_DG9:DG9_A A 9 ? A 9 ? 4 12
1 A DA 10 1_555 A DA 10 4_555 5.408 -5.151 0.000 11.307 -36.617 180.000 8 A_DA10:DA10_A A 10 ? A 10 ? 2 7
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 4 1_555 A DC 4 4_555 A DG 5 1_555 A DG 5 4_555 0.000 0.363 2.926 0.000 0.000 -59.991 0.013 0.619 2.860 6.322
10.456 -59.991 1 AA_DC4DG5:DG5DC4_AA A 4 ? A 4 ? A 5 ? A 5 ?
1 A DG 5 1_555 A DG 5 4_555 A DG 6 1_555 A DG 6 4_555 0.000 -1.185 6.945 0.000 0.000 -8.130 -32.691 -33.034 1.652 -57.333
-50.253 -8.130 2 AA_DG5DG6:DG6DG5_AA A 5 ? A 5 ? A 6 ? A 6 ?
1 A DG 6 1_555 A DG 6 4_555 A DA 7 1_555 A DA 7 4_555 0.000 -1.482 4.382 0.000 0.000 -74.621 -0.139 1.296 3.967 13.022
21.527 -74.621 3 AA_DG6DA7:DA7DG6_AA A 6 ? A 6 ? A 7 ? A 7 ?
1 A DA 7 1_555 A DA 7 4_555 A DT 8 1_555 A DT 8 4_555 0.000 -1.950 2.994 0.000 0.000 119.621 0.098 -0.801 2.649 -25.540
10.949 119.621 4 AA_DA7DT8:DT8DA7_AA A 7 ? A 7 ? A 8 ? A 8 ?
1 A DT 8 1_555 A DT 8 4_555 A DG 9 1_555 A DG 9 4_555 0.000 -2.935 3.256 0.000 0.000 -172.344 -0.006 0.445 2.958 24.616
1.996 -172.344 5 AA_DT8DG9:DG9DT8_AA A 8 ? A 8 ? A 9 ? A 9 ?
1 A DG 9 1_555 A DG 9 4_555 A DA 10 1_555 A DA 10 4_555 0.000 0.000 4.754 0.000 0.000 -7.793 0.000 0.000 4.754 0.000
0.000 -7.793 6 AA_DG9DA10:DA10DG9_AA A 9 ? A 9 ? A 10 ? A 10 ?
#
_atom_sites.entry_id 4RIM
_atom_sites.fract_transf_matrix[1][1] 0.039510
_atom_sites.fract_transf_matrix[1][2] 0.022811
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.045622
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.005958
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DA A 1 1 ? 1.404 -7.328 -33.800 1.00 66.29 ? 1 DA A "O5'" 1
ATOM 2 C "C5'" . DA A 1 1 ? 0.774 -6.358 -34.656 1.00 63.80 ? 1 DA A "C5'" 1
ATOM 3 C "C4'" . DA A 1 1 ? -0.726 -6.545 -34.691 1.00 63.44 ? 1 DA A "C4'" 1
ATOM 4 O "O4'" . DA A 1 1 ? -1.339 -5.240 -34.654 1.00 58.45 ? 1 DA A "O4'" 1
ATOM 5 C "C3'" . DA A 1 1 ? -1.287 -7.214 -35.945 1.00 66.10 ? 1 DA A "C3'" 1
ATOM 6 O "O3'" . DA A 1 1 ? -2.522 -7.882 -35.630 1.00 74.73 ? 1 DA A "O3'" 1
ATOM 7 C "C2'" . DA A 1 1 ? -1.566 -6.032 -36.854 1.00 61.49 ? 1 DA A "C2'" 1
ATOM 8 C "C1'" . DA A 1 1 ? -2.033 -4.979 -35.863 1.00 56.77 ? 1 DA A "C1'" 1
ATOM 9 N N9 . DA A 1 1 ? -1.730 -3.606 -36.239 1.00 51.18 ? 1 DA A N9 1
ATOM 10 C C8 . DA A 1 1 ? -0.487 -3.024 -36.300 1.00 49.28 ? 1 DA A C8 1
ATOM 11 N N7 . DA A 1 1 ? -0.515 -1.751 -36.610 1.00 47.19 ? 1 DA A N7 1
ATOM 12 C C5 . DA A 1 1 ? -1.868 -1.470 -36.746 1.00 46.60 ? 1 DA A C5 1
ATOM 13 C C6 . DA A 1 1 ? -2.560 -0.294 -37.071 1.00 45.81 ? 1 DA A C6 1
ATOM 14 N N6 . DA A 1 1 ? -1.965 0.874 -37.313 1.00 45.72 ? 1 DA A N6 1
ATOM 15 N N1 . DA A 1 1 ? -3.907 -0.352 -37.121 1.00 47.41 ? 1 DA A N1 1
ATOM 16 C C2 . DA A 1 1 ? -4.509 -1.519 -36.852 1.00 48.06 ? 1 DA A C2 1
ATOM 17 N N3 . DA A 1 1 ? -3.968 -2.688 -36.523 1.00 48.67 ? 1 DA A N3 1
ATOM 18 C C4 . DA A 1 1 ? -2.628 -2.599 -36.499 1.00 47.97 ? 1 DA A C4 1
ATOM 19 P P . DC A 1 2 ? -2.940 -9.275 -36.361 1.00 83.56 ? 2 DC A P 1
ATOM 20 O OP1 . DC A 1 2 ? -1.718 -9.878 -36.961 1.00 83.89 ? 2 DC A OP1 1
ATOM 21 O OP2 . DC A 1 2 ? -4.116 -9.004 -37.249 1.00 83.82 ? 2 DC A OP2 1
ATOM 22 O "O5'" . DC A 1 2 ? -3.426 -10.169 -35.131 1.00 86.72 ? 2 DC A "O5'" 1
ATOM 23 C "C5'" . DC A 1 2 ? -2.715 -11.352 -34.699 1.00 90.84 ? 2 DC A "C5'" 1
ATOM 24 C "C4'" . DC A 1 2 ? -2.213 -11.158 -33.288 1.00 90.99 ? 2 DC A "C4'" 1
ATOM 25 O "O4'" . DC A 1 2 ? -3.291 -10.655 -32.459 1.00 92.12 ? 2 DC A "O4'" 1
ATOM 26 C "C3'" . DC A 1 2 ? -1.743 -12.440 -32.602 1.00 93.96 ? 2 DC A "C3'" 1
ATOM 27 O "O3'" . DC A 1 2 ? -0.719 -12.185 -31.624 1.00 89.57 ? 2 DC A "O3'" 1
ATOM 28 C "C2'" . DC A 1 2 ? -3.018 -12.951 -31.954 1.00 96.91 ? 2 DC A "C2'" 1
ATOM 29 C "C1'" . DC A 1 2 ? -3.711 -11.659 -31.537 1.00 94.32 ? 2 DC A "C1'" 1
ATOM 30 P P . DT A 1 3 ? 0.798 -11.847 -32.085 1.00 84.98 ? 3 DT A P 1
ATOM 31 O OP1 . DT A 1 3 ? 0.917 -12.051 -33.562 1.00 85.31 ? 3 DT A OP1 1
ATOM 32 O OP2 . DT A 1 3 ? 1.727 -12.525 -31.143 1.00 87.14 ? 3 DT A OP2 1
ATOM 33 O "O5'" . DT A 1 3 ? 0.919 -10.281 -31.822 1.00 78.79 ? 3 DT A "O5'" 1
ATOM 34 C "C5'" . DT A 1 3 ? -0.054 -9.600 -31.023 1.00 72.09 ? 3 DT A "C5'" 1
ATOM 35 C "C4'" . DT A 1 3 ? 0.597 -8.437 -30.325 1.00 66.93 ? 3 DT A "C4'" 1
ATOM 36 O "O4'" . DT A 1 3 ? -0.305 -7.318 -30.422 1.00 65.13 ? 3 DT A "O4'" 1
ATOM 37 C "C3'" . DT A 1 3 ? 0.796 -8.668 -28.832 1.00 65.10 ? 3 DT A "C3'" 1
ATOM 38 O "O3'" . DT A 1 3 ? 1.815 -7.808 -28.352 1.00 56.70 ? 3 DT A "O3'" 1
ATOM 39 C "C2'" . DT A 1 3 ? -0.544 -8.269 -28.256 1.00 65.96 ? 3 DT A "C2'" 1
ATOM 40 C "C1'" . DT A 1 3 ? -0.978 -7.139 -29.182 1.00 66.05 ? 3 DT A "C1'" 1
ATOM 41 N N1 . DT A 1 3 ? -2.432 -7.031 -29.453 1.00 69.25 ? 3 DT A N1 1
ATOM 42 C C2 . DT A 1 3 ? -2.959 -5.759 -29.509 1.00 68.83 ? 3 DT A C2 1
ATOM 43 O O2 . DT A 1 3 ? -2.282 -4.755 -29.364 1.00 62.55 ? 3 DT A O2 1
ATOM 44 N N3 . DT A 1 3 ? -4.313 -5.706 -29.748 1.00 70.32 ? 3 DT A N3 1
ATOM 45 C C4 . DT A 1 3 ? -5.172 -6.778 -29.915 1.00 74.13 ? 3 DT A C4 1
ATOM 46 O O4 . DT A 1 3 ? -6.369 -6.578 -30.112 1.00 76.53 ? 3 DT A O4 1
ATOM 47 C C5 . DT A 1 3 ? -4.553 -8.085 -29.836 1.00 75.53 ? 3 DT A C5 1
ATOM 48 C C7 . DT A 1 3 ? -5.404 -9.302 -30.013 1.00 79.19 ? 3 DT A C7 1
ATOM 49 C C6 . DT A 1 3 ? -3.232 -8.146 -29.619 1.00 73.74 ? 3 DT A C6 1
ATOM 50 P P . DC A 1 4 ? 2.667 -8.185 -27.073 1.00 54.35 ? 4 DC A P 1
ATOM 51 O OP1 . DC A 1 4 ? 3.659 -9.240 -27.427 1.00 58.22 ? 4 DC A OP1 1
ATOM 52 O OP2 . DC A 1 4 ? 1.755 -8.344 -25.906 1.00 54.35 ? 4 DC A OP2 1
ATOM 53 O "O5'" . DC A 1 4 ? 3.471 -6.843 -26.828 1.00 49.68 ? 4 DC A "O5'" 1
ATOM 54 C "C5'" . DC A 1 4 ? 4.323 -6.314 -27.830 1.00 45.35 ? 4 DC A "C5'" 1
ATOM 55 C "C4'" . DC A 1 4 ? 4.744 -4.925 -27.421 1.00 42.03 ? 4 DC A "C4'" 1
ATOM 56 O "O4'" . DC A 1 4 ? 3.655 -3.996 -27.604 1.00 37.63 ? 4 DC A "O4'" 1
ATOM 57 C "C3'" . DC A 1 4 ? 5.156 -4.797 -25.959 1.00 41.73 ? 4 DC A "C3'" 1
ATOM 58 O "O3'" . DC A 1 4 ? 6.292 -3.948 -26.019 1.00 43.36 ? 4 DC A "O3'" 1
ATOM 59 C "C2'" . DC A 1 4 ? 3.934 -4.173 -25.302 1.00 39.20 ? 4 DC A "C2'" 1
ATOM 60 C "C1'" . DC A 1 4 ? 3.430 -3.284 -26.414 1.00 37.04 ? 4 DC A "C1'" 1
ATOM 61 N N1 . DC A 1 4 ? 2.011 -2.938 -26.376 1.00 36.03 ? 4 DC A N1 1
ATOM 62 C C2 . DC A 1 4 ? 1.636 -1.587 -26.336 1.00 34.41 ? 4 DC A C2 1
ATOM 63 O O2 . DC A 1 4 ? 2.518 -0.715 -26.309 1.00 35.48 ? 4 DC A O2 1
ATOM 64 N N3 . DC A 1 4 ? 0.330 -1.266 -26.324 1.00 32.70 ? 4 DC A N3 1
ATOM 65 C C4 . DC A 1 4 ? -0.592 -2.226 -26.341 1.00 34.24 ? 4 DC A C4 1
ATOM 66 N N4 . DC A 1 4 ? -1.871 -1.856 -26.337 1.00 32.80 ? 4 DC A N4 1
ATOM 67 C C5 . DC A 1 4 ? -0.241 -3.611 -26.369 1.00 34.82 ? 4 DC A C5 1
ATOM 68 C C6 . DC A 1 4 ? 1.059 -3.918 -26.384 1.00 35.13 ? 4 DC A C6 1
ATOM 69 P P . DG A 1 5 ? 7.173 -3.683 -24.737 1.00 46.00 ? 5 DG A P 1
ATOM 70 O OP1 . DG A 1 5 ? 8.320 -2.859 -25.186 1.00 48.03 ? 5 DG A OP1 1
ATOM 71 O OP2 . DG A 1 5 ? 7.432 -4.993 -24.073 1.00 45.92 ? 5 DG A OP2 1
ATOM 72 O "O5'" . DG A 1 5 ? 6.182 -2.865 -23.790 1.00 44.40 ? 5 DG A "O5'" 1
ATOM 73 C "C5'" . DG A 1 5 ? 5.885 -1.467 -23.947 1.00 43.67 ? 5 DG A "C5'" 1
ATOM 74 C "C4'" . DG A 1 5 ? 4.901 -1.071 -22.875 1.00 43.95 ? 5 DG A "C4'" 1
ATOM 75 O "O4'" . DG A 1 5 ? 3.629 -1.722 -23.124 1.00 43.11 ? 5 DG A "O4'" 1
ATOM 76 C "C3'" . DG A 1 5 ? 5.316 -1.495 -21.457 1.00 45.70 ? 5 DG A "C3'" 1
ATOM 77 O "O3'" . DG A 1 5 ? 5.092 -0.421 -20.544 1.00 49.29 ? 5 DG A "O3'" 1
ATOM 78 C "C2'" . DG A 1 5 ? 4.424 -2.692 -21.179 1.00 43.94 ? 5 DG A "C2'" 1
ATOM 79 C "C1'" . DG A 1 5 ? 3.179 -2.274 -21.912 1.00 42.14 ? 5 DG A "C1'" 1
ATOM 80 N N9 . DG A 1 5 ? 2.194 -3.298 -22.218 1.00 41.09 ? 5 DG A N9 1
ATOM 81 C C8 . DG A 1 5 ? 2.350 -4.663 -22.260 1.00 41.31 ? 5 DG A C8 1
ATOM 82 N N7 . DG A 1 5 ? 1.247 -5.292 -22.567 1.00 41.64 ? 5 DG A N7 1
ATOM 83 C C5 . DG A 1 5 ? 0.310 -4.282 -22.730 1.00 41.01 ? 5 DG A C5 1
ATOM 84 C C6 . DG A 1 5 ? -1.070 -4.345 -23.062 1.00 42.08 ? 5 DG A C6 1
ATOM 85 O O6 . DG A 1 5 ? -1.772 -5.340 -23.263 1.00 45.06 ? 5 DG A O6 1
ATOM 86 N N1 . DG A 1 5 ? -1.638 -3.074 -23.131 1.00 40.34 ? 5 DG A N1 1
ATOM 87 C C2 . DG A 1 5 ? -0.962 -1.899 -22.931 1.00 39.18 ? 5 DG A C2 1
ATOM 88 N N2 . DG A 1 5 ? -1.680 -0.768 -23.053 1.00 40.46 ? 5 DG A N2 1
ATOM 89 N N3 . DG A 1 5 ? 0.321 -1.830 -22.631 1.00 39.03 ? 5 DG A N3 1
ATOM 90 C C4 . DG A 1 5 ? 0.884 -3.047 -22.527 1.00 39.62 ? 5 DG A C4 1
ATOM 91 P P . DG A 1 6 ? 5.768 -0.450 -19.045 1.00 53.25 ? 6 DG A P 1
ATOM 92 O OP1 . DG A 1 6 ? 5.419 0.825 -18.365 1.00 53.53 ? 6 DG A OP1 1
ATOM 93 O OP2 . DG A 1 6 ? 7.189 -0.920 -19.160 1.00 52.95 ? 6 DG A OP2 1
ATOM 94 O "O5'" . DG A 1 6 ? 4.971 -1.600 -18.305 1.00 52.78 ? 6 DG A "O5'" 1
ATOM 95 C "C5'" . DG A 1 6 ? 5.492 -2.179 -17.117 1.00 54.92 ? 6 DG A "C5'" 1
ATOM 96 C "C4'" . DG A 1 6 ? 4.641 -1.724 -15.959 1.00 54.86 ? 6 DG A "C4'" 1
ATOM 97 O "O4'" . DG A 1 6 ? 3.267 -2.099 -16.216 1.00 52.23 ? 6 DG A "O4'" 1
ATOM 98 C "C3'" . DG A 1 6 ? 5.021 -2.353 -14.613 1.00 55.85 ? 6 DG A "C3'" 1
ATOM 99 O "O3'" . DG A 1 6 ? 5.103 -1.361 -13.578 1.00 59.41 ? 6 DG A "O3'" 1
ATOM 100 C "C2'" . DG A 1 6 ? 3.933 -3.382 -14.387 1.00 53.70 ? 6 DG A "C2'" 1
ATOM 101 C "C1'" . DG A 1 6 ? 2.763 -2.700 -15.041 1.00 51.66 ? 6 DG A "C1'" 1
ATOM 102 N N9 . DG A 1 6 ? 1.650 -3.551 -15.413 1.00 48.42 ? 6 DG A N9 1
ATOM 103 C C8 . DG A 1 6 ? 1.602 -4.921 -15.511 1.00 49.10 ? 6 DG A C8 1
ATOM 104 N N7 . DG A 1 6 ? 0.412 -5.369 -15.802 1.00 49.37 ? 6 DG A N7 1
ATOM 105 C C5 . DG A 1 6 ? -0.370 -4.228 -15.892 1.00 48.05 ? 6 DG A C5 1
ATOM 106 C C6 . DG A 1 6 ? -1.744 -4.078 -16.195 1.00 49.15 ? 6 DG A C6 1
ATOM 107 O O6 . DG A 1 6 ? -2.579 -4.959 -16.454 1.00 51.30 ? 6 DG A O6 1
ATOM 108 N N1 . DG A 1 6 ? -2.123 -2.736 -16.199 1.00 47.48 ? 6 DG A N1 1
ATOM 109 C C2 . DG A 1 6 ? -1.288 -1.680 -15.922 1.00 46.44 ? 6 DG A C2 1
ATOM 110 N N2 . DG A 1 6 ? -1.834 -0.457 -15.959 1.00 47.43 ? 6 DG A N2 1
ATOM 111 N N3 . DG A 1 6 ? -0.008 -1.811 -15.635 1.00 47.17 ? 6 DG A N3 1
ATOM 112 C C4 . DG A 1 6 ? 0.381 -3.101 -15.640 1.00 47.35 ? 6 DG A C4 1
ATOM 113 P P . DA A 1 7 ? 6.217 -1.500 -12.399 1.00 65.22 ? 7 DA A P 1
ATOM 114 O OP1 . DA A 1 7 ? 7.478 -2.037 -12.999 1.00 64.77 ? 7 DA A OP1 1
ATOM 115 O OP2 . DA A 1 7 ? 5.581 -2.223 -11.242 1.00 66.64 ? 7 DA A OP2 1
ATOM 116 O "O5'" . DA A 1 7 ? 6.515 0.031 -12.042 1.00 65.76 ? 7 DA A "O5'" 1
ATOM 117 C "C5'" . DA A 1 7 ? 7.241 0.899 -12.951 1.00 64.86 ? 7 DA A "C5'" 1
ATOM 118 C "C4'" . DA A 1 7 ? 6.558 2.240 -13.123 1.00 63.02 ? 7 DA A "C4'" 1
ATOM 119 O "O4'" . DA A 1 7 ? 5.269 2.061 -13.735 1.00 58.68 ? 7 DA A "O4'" 1
ATOM 120 C "C3'" . DA A 1 7 ? 6.258 3.030 -11.855 1.00 63.57 ? 7 DA A "C3'" 1
ATOM 121 O "O3'" . DA A 1 7 ? 7.328 3.882 -11.457 1.00 67.71 ? 7 DA A "O3'" 1
ATOM 122 C "C2'" . DA A 1 7 ? 5.112 3.924 -12.285 1.00 61.44 ? 7 DA A "C2'" 1
ATOM 123 C "C1'" . DA A 1 7 ? 4.389 3.106 -13.327 1.00 56.67 ? 7 DA A "C1'" 1
ATOM 124 N N9 . DA A 1 7 ? 3.141 2.495 -12.873 1.00 54.05 ? 7 DA A N9 1
ATOM 125 C C8 . DA A 1 7 ? 2.866 1.172 -12.625 1.00 52.07 ? 7 DA A C8 1
ATOM 126 N N7 . DA A 1 7 ? 1.615 0.944 -12.310 1.00 51.44 ? 7 DA A N7 1
ATOM 127 C C5 . DA A 1 7 ? 1.027 2.199 -12.349 1.00 50.58 ? 7 DA A C5 1
ATOM 128 C C6 . DA A 1 7 ? -0.282 2.636 -12.099 1.00 51.22 ? 7 DA A C6 1
ATOM 129 N N6 . DA A 1 7 ? -1.279 1.821 -11.750 1.00 52.32 ? 7 DA A N6 1
ATOM 130 N N1 . DA A 1 7 ? -0.544 3.954 -12.243 1.00 52.05 ? 7 DA A N1 1
ATOM 131 C C2 . DA A 1 7 ? 0.461 4.773 -12.586 1.00 52.92 ? 7 DA A C2 1
ATOM 132 N N3 . DA A 1 7 ? 1.740 4.482 -12.824 1.00 51.46 ? 7 DA A N3 1
ATOM 133 C C4 . DA A 1 7 ? 1.956 3.164 -12.694 1.00 51.61 ? 7 DA A C4 1
ATOM 134 P P . DT A 1 8 ? 7.590 4.133 -9.891 1.00 74.60 ? 8 DT A P 1
ATOM 135 O OP1 . DT A 1 8 ? 8.753 5.054 -9.751 1.00 77.34 ? 8 DT A OP1 1
ATOM 136 O OP2 . DT A 1 8 ? 7.607 2.803 -9.208 1.00 73.67 ? 8 DT A OP2 1
ATOM 137 O "O5'" . DT A 1 8 ? 6.247 4.841 -9.403 1.00 71.07 ? 8 DT A "O5'" 1
ATOM 138 C "C5'" . DT A 1 8 ? 5.789 6.093 -9.945 1.00 69.16 ? 8 DT A "C5'" 1
ATOM 139 C "C4'" . DT A 1 8 ? 4.364 6.328 -9.501 1.00 67.17 ? 8 DT A "C4'" 1
ATOM 140 O "O4'" . DT A 1 8 ? 3.506 5.208 -9.870 1.00 63.24 ? 8 DT A "O4'" 1
ATOM 141 C "C3'" . DT A 1 8 ? 4.219 6.480 -7.984 1.00 67.14 ? 8 DT A "C3'" 1
ATOM 142 O "O3'" . DT A 1 8 ? 3.239 7.492 -7.740 1.00 70.37 ? 8 DT A "O3'" 1
ATOM 143 C "C2'" . DT A 1 8 ? 3.749 5.104 -7.553 1.00 64.74 ? 8 DT A "C2'" 1
ATOM 144 C "C1'" . DT A 1 8 ? 2.817 4.768 -8.706 1.00 61.96 ? 8 DT A "C1'" 1
ATOM 145 N N1 . DT A 1 8 ? 2.511 3.332 -8.849 1.00 56.92 ? 8 DT A N1 1
ATOM 146 C C2 . DT A 1 8 ? 1.195 2.929 -8.847 1.00 53.87 ? 8 DT A C2 1
ATOM 147 O O2 . DT A 1 8 ? 0.257 3.705 -8.768 1.00 54.02 ? 8 DT A O2 1
ATOM 148 N N3 . DT A 1 8 ? 1.015 1.575 -8.948 1.00 52.02 ? 8 DT A N3 1
ATOM 149 C C4 . DT A 1 8 ? 1.996 0.607 -9.032 1.00 53.07 ? 8 DT A C4 1
ATOM 150 O O4 . DT A 1 8 ? 1.682 -0.576 -9.120 1.00 55.55 ? 8 DT A O4 1
ATOM 151 C C5 . DT A 1 8 ? 3.351 1.097 -8.992 1.00 53.75 ? 8 DT A C5 1
ATOM 152 C C7 . DT A 1 8 ? 4.481 0.122 -9.089 1.00 54.37 ? 8 DT A C7 1
ATOM 153 C C6 . DT A 1 8 ? 3.538 2.417 -8.902 1.00 55.86 ? 8 DT A C6 1
ATOM 154 P P . DG A 1 9 ? 2.824 7.897 -6.250 1.00 73.30 ? 9 DG A P 1
ATOM 155 O OP1 . DG A 1 9 ? 1.964 9.101 -6.341 1.00 75.40 ? 9 DG A OP1 1
ATOM 156 O OP2 . DG A 1 9 ? 4.059 7.919 -5.402 1.00 74.88 ? 9 DG A OP2 1
ATOM 157 O "O5'" . DG A 1 9 ? 1.899 6.679 -5.810 1.00 71.32 ? 9 DG A "O5'" 1
ATOM 158 C "C5'" . DG A 1 9 ? 0.550 6.494 -6.289 1.00 66.93 ? 9 DG A "C5'" 1
ATOM 159 C "C4'" . DG A 1 9 ? -0.087 5.386 -5.485 1.00 65.69 ? 9 DG A "C4'" 1
ATOM 160 O "O4'" . DG A 1 9 ? 0.650 4.154 -5.676 1.00 62.72 ? 9 DG A "O4'" 1
ATOM 161 C "C3'" . DG A 1 9 ? -0.084 5.648 -3.976 1.00 66.03 ? 9 DG A "C3'" 1
ATOM 162 O "O3'" . DG A 1 9 ? -1.321 5.268 -3.371 1.00 69.38 ? 9 DG A "O3'" 1
ATOM 163 C "C2'" . DG A 1 9 ? 1.059 4.797 -3.463 1.00 64.31 ? 9 DG A "C2'" 1
ATOM 164 C "C1'" . DG A 1 9 ? 1.054 3.624 -4.422 1.00 61.18 ? 9 DG A "C1'" 1
ATOM 165 N N9 . DG A 1 9 ? 2.346 2.962 -4.599 1.00 57.86 ? 9 DG A N9 1
ATOM 166 C C8 . DG A 1 9 ? 3.590 3.514 -4.412 1.00 57.66 ? 9 DG A C8 1
ATOM 167 N N7 . DG A 1 9 ? 4.562 2.677 -4.648 1.00 58.25 ? 9 DG A N7 1
ATOM 168 C C5 . DG A 1 9 ? 3.924 1.497 -4.999 1.00 57.37 ? 9 DG A C5 1
ATOM 169 C C6 . DG A 1 9 ? 4.464 0.230 -5.349 1.00 58.81 ? 9 DG A C6 1
ATOM 170 O O6 . DG A 1 9 ? 5.655 -0.108 -5.420 1.00 61.78 ? 9 DG A O6 1
ATOM 171 N N1 . DG A 1 9 ? 3.460 -0.697 -5.624 1.00 57.29 ? 9 DG A N1 1
ATOM 172 C C2 . DG A 1 9 ? 2.111 -0.433 -5.587 1.00 57.47 ? 9 DG A C2 1
ATOM 173 N N2 . DG A 1 9 ? 1.295 -1.458 -5.886 1.00 57.45 ? 9 DG A N2 1
ATOM 174 N N3 . DG A 1 9 ? 1.596 0.745 -5.256 1.00 57.02 ? 9 DG A N3 1
ATOM 175 C C4 . DG A 1 9 ? 2.555 1.654 -4.971 1.00 56.44 ? 9 DG A C4 1
ATOM 176 P P . DA A 1 10 ? -2.101 6.312 -2.444 1.00 74.33 ? 10 DA A P 1
ATOM 177 O OP1 . DA A 1 10 ? -2.144 7.627 -3.144 1.00 74.29 ? 10 DA A OP1 1
ATOM 178 O OP2 . DA A 1 10 ? -1.535 6.221 -1.047 1.00 77.00 ? 10 DA A OP2 1
ATOM 179 O "O5'" . DA A 1 10 ? -3.574 5.719 -2.426 1.00 72.37 ? 10 DA A "O5'" 1
ATOM 180 C "C5'" . DA A 1 10 ? -4.429 5.779 -3.576 1.00 72.05 ? 10 DA A "C5'" 1
ATOM 181 C "C4'" . DA A 1 10 ? -5.314 4.559 -3.558 1.00 71.70 ? 10 DA A "C4'" 1
ATOM 182 O "O4'" . DA A 1 10 ? -4.445 3.433 -3.736 1.00 67.54 ? 10 DA A "O4'" 1
ATOM 183 C "C3'" . DA A 1 10 ? -5.995 4.325 -2.210 1.00 74.10 ? 10 DA A "C3'" 1
ATOM 184 O "O3'" . DA A 1 10 ? -7.280 4.965 -2.063 1.00 82.86 ? 10 DA A "O3'" 1
ATOM 185 C "C2'" . DA A 1 10 ? -5.977 2.816 -2.036 1.00 71.31 ? 10 DA A "C2'" 1
ATOM 186 C "C1'" . DA A 1 10 ? -4.942 2.315 -3.028 1.00 66.12 ? 10 DA A "C1'" 1
ATOM 187 N N9 . DA A 1 10 ? -3.789 1.563 -2.528 1.00 60.11 ? 10 DA A N9 1
ATOM 188 C C8 . DA A 1 10 ? -2.470 1.950 -2.556 1.00 57.98 ? 10 DA A C8 1
ATOM 189 N N7 . DA A 1 10 ? -1.638 1.017 -2.160 1.00 56.50 ? 10 DA A N7 1
ATOM 190 C C5 . DA A 1 10 ? -2.462 -0.065 -1.879 1.00 56.75 ? 10 DA A C5 1
ATOM 191 C C6 . DA A 1 10 ? -2.191 -1.365 -1.413 1.00 56.99 ? 10 DA A C6 1
ATOM 192 N N6 . DA A 1 10 ? -0.964 -1.810 -1.131 1.00 58.03 ? 10 DA A N6 1
ATOM 193 N N1 . DA A 1 10 ? -3.238 -2.201 -1.237 1.00 58.21 ? 10 DA A N1 1
ATOM 194 C C2 . DA A 1 10 ? -4.468 -1.755 -1.524 1.00 59.06 ? 10 DA A C2 1
ATOM 195 N N3 . DA A 1 10 ? -4.847 -0.557 -1.968 1.00 58.69 ? 10 DA A N3 1
ATOM 196 C C4 . DA A 1 10 ? -3.786 0.250 -2.124 1.00 57.51 ? 10 DA A C4 1
ATOM 197 P P . DT A 1 11 ? -8.436 4.827 -3.165 1.00 86.86 ? 11 DT A P 1
ATOM 198 O OP1 . DT A 1 11 ? -8.463 6.095 -3.941 1.00 88.22 ? 11 DT A OP1 1
ATOM 199 O OP2 . DT A 1 11 ? -9.672 4.378 -2.463 1.00 88.83 ? 11 DT A OP2 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 O "O5'" . DA A 1 ? 0.8894 0.7750 0.8545 -0.0078 -0.0055 -0.0654 1 DA A "O5'"
2 C "C5'" . DA A 1 ? 0.8400 0.7625 0.8217 -0.0145 -0.0037 -0.0672 1 DA A "C5'"
3 C "C4'" . DA A 1 ? 0.8346 0.7631 0.8128 -0.0351 -0.0035 -0.0707 1 DA A "C4'"
4 O "O4'" . DA A 1 ? 0.7536 0.7205 0.7468 -0.0339 -0.0026 -0.0660 1 DA A "O4'"
5 C "C3'" . DA A 1 ? 0.8714 0.8006 0.8396 -0.0437 -0.0040 -0.0833 1 DA A "C3'"
6 O "O3'" . DA A 1 ? 0.9854 0.9120 0.9419 -0.0706 -0.0038 -0.0882 1 DA A "O3'"
7 C "C2'" . DA A 1 ? 0.7925 0.7669 0.7770 -0.0351 -0.0032 -0.0836 1 DA A "C2'"
8 C "C1'" . DA A 1 ? 0.7228 0.7172 0.7171 -0.0342 -0.0026 -0.0735 1 DA A "C1'"
9 N N9 . DA A 1 ? 0.6452 0.6564 0.6429 -0.0185 -0.0012 -0.0676 1 DA A N9
10 C C8 . DA A 1 ? 0.6251 0.6246 0.6227 -0.0092 0.0008 -0.0620 1 DA A C8
11 N N7 . DA A 1 ? 0.5993 0.6052 0.5884 -0.0016 0.0029 -0.0567 1 DA A N7
12 C C5 . DA A 1 ? 0.5869 0.6125 0.5712 0.0019 0.0011 -0.0590 1 DA A C5
13 C C6 . DA A 1 ? 0.5799 0.6148 0.5460 0.0170 0.0014 -0.0558 1 DA A C6
14 N N6 . DA A 1 ? 0.5948 0.6047 0.5375 0.0261 0.0044 -0.0483 1 DA A N6
15 N N1 . DA A 1 ? 0.5883 0.6586 0.5544 0.0225 -0.0015 -0.0610 1 DA A N1
16 C C2 . DA A 1 ? 0.5830 0.6764 0.5667 0.0048 -0.0033 -0.0689 1 DA A C2
17 N N3 . DA A 1 ? 0.5941 0.6667 0.5885 -0.0146 -0.0030 -0.0716 1 DA A N3
18 C C4 . DA A 1 ? 0.5970 0.6350 0.5908 -0.0107 -0.0012 -0.0662 1 DA A C4
19 P P . DC A 2 ? 1.1191 1.0109 1.0448 -0.0917 -0.0043 -0.1023 2 DC A P
20 O OP1 . DC A 2 ? 1.1437 0.9918 1.0520 -0.0694 -0.0056 -0.1060 2 DC A OP1
21 O OP2 . DC A 2 ? 1.1012 1.0467 1.0368 -0.1082 -0.0045 -0.1124 2 DC A OP2
22 O "O5'" . DC A 2 ? 1.1822 1.0317 1.0811 -0.1182 -0.0026 -0.0989 2 DC A "O5'"
23 C "C5'" . DC A 2 ? 1.2762 1.0432 1.1323 -0.1161 -0.0027 -0.0983 2 DC A "C5'"
24 C "C4'" . DC A 2 ? 1.2834 1.0331 1.1407 -0.1046 -0.0023 -0.0839 2 DC A "C4'"
25 O "O4'" . DC A 2 ? 1.2783 1.0692 1.1526 -0.1296 0.0003 -0.0785 2 DC A "O4'"
26 C "C3'" . DC A 2 ? 1.3696 1.0288 1.1716 -0.1044 -0.0022 -0.0815 2 DC A "C3'"
27 O "O3'" . DC A 2 ? 1.3159 0.9648 1.1224 -0.0734 -0.0041 -0.0697 2 DC A "O3'"
28 C "C2'" . DC A 2 ? 1.4196 1.0646 1.1981 -0.1513 0.0021 -0.0813 2 DC A "C2'"
29 C "C1'" . DC A 2 ? 1.3377 1.0746 1.1715 -0.1569 0.0032 -0.0756 2 DC A "C1'"
30 P P . DT A 3 ? 1.2477 0.9117 1.0694 -0.0265 -0.0080 -0.0701 3 DT A P
31 O OP1 . DT A 3 ? 1.2509 0.9201 1.0706 -0.0208 -0.0088 -0.0830 3 DT A OP1
32 O OP2 . DT A 3 ? 1.3040 0.9164 1.0908 0.0006 -0.0105 -0.0635 3 DT A OP2
33 O "O5'" . DT A 3 ? 1.1227 0.8682 1.0028 -0.0219 -0.0077 -0.0628 3 DT A "O5'"
34 C "C5'" . DT A 3 ? 1.0217 0.7963 0.9213 -0.0449 -0.0054 -0.0558 3 DT A "C5'"
35 C "C4'" . DT A 3 ? 0.9325 0.7475 0.8631 -0.0286 -0.0063 -0.0468 3 DT A "C4'"
36 O "O4'" . DT A 3 ? 0.8849 0.7476 0.8421 -0.0419 -0.0045 -0.0455 3 DT A "O4'"
37 C "C3'" . DT A 3 ? 0.9210 0.7131 0.8393 -0.0264 -0.0070 -0.0369 3 DT A "C3'"
38 O "O3'" . DT A 3 ? 0.7969 0.6205 0.7368 -0.0065 -0.0090 -0.0319 3 DT A "O3'"
39 C "C2'" . DT A 3 ? 0.9226 0.7345 0.8493 -0.0535 -0.0040 -0.0333 3 DT A "C2'"
40 C "C1'" . DT A 3 ? 0.8955 0.7614 0.8526 -0.0542 -0.0034 -0.0379 3 DT A "C1'"
41 N N1 . DT A 3 ? 0.9251 0.8203 0.8859 -0.0770 -0.0011 -0.0424 3 DT A N1
42 C C2 . DT A 3 ? 0.8962 0.8406 0.8784 -0.0708 -0.0010 -0.0410 3 DT A C2
43 O O2 . DT A 3 ? 0.8106 0.7626 0.8034 -0.0526 -0.0021 -0.0361 3 DT A O2
44 N N3 . DT A 3 ? 0.9010 0.8852 0.8858 -0.0868 0.0004 -0.0465 3 DT A N3
45 C C4 . DT A 3 ? 0.9540 0.9379 0.9247 -0.1163 0.0025 -0.0537 3 DT A C4
46 O O4 . DT A 3 ? 0.9640 1.0025 0.9413 -0.1301 0.0036 -0.0597 3 DT A O4
47 C C5 . DT A 3 ? 1.0036 0.9202 0.9460 -0.1279 0.0030 -0.0542 3 DT A C5
48 C C7 . DT A 3 ? 1.0665 0.9632 0.9794 -0.1664 0.0061 -0.0623 3 DT A C7
49 C C6 . DT A 3 ? 0.9965 0.8711 0.9343 -0.1037 0.0008 -0.0484 3 DT A C6
50 P P . DC A 4 ? 0.7786 0.5830 0.7036 0.0113 -0.0119 -0.0245 4 DC A P
51 O OP1 . DC A 4 ? 0.8478 0.6200 0.7441 0.0387 -0.0149 -0.0290 4 DC A OP1
52 O OP2 . DC A 4 ? 0.7892 0.5734 0.7026 -0.0069 -0.0101 -0.0164 4 DC A OP2
53 O "O5'" . DC A 4 ? 0.6894 0.5505 0.6477 0.0190 -0.0130 -0.0224 4 DC A "O5'"
54 C "C5'" . DC A 4 ? 0.6171 0.5142 0.5919 0.0280 -0.0129 -0.0288 4 DC A "C5'"
55 C "C4'" . DC A 4 ? 0.5539 0.4927 0.5503 0.0206 -0.0122 -0.0258 4 DC A "C4'"
56 O "O4'" . DC A 4 ? 0.4957 0.4351 0.4988 0.0020 -0.0091 -0.0236 4 DC A "O4'"
57 C "C3'" . DC A 4 ? 0.5492 0.4925 0.5438 0.0250 -0.0150 -0.0196 4 DC A "C3'"
58 O "O3'" . DC A 4 ? 0.5497 0.5395 0.5581 0.0253 -0.0153 -0.0227 4 DC A "O3'"
59 C "C2'" . DC A 4 ? 0.5211 0.4513 0.5169 0.0069 -0.0130 -0.0135 4 DC A "C2'"
60 C "C1'" . DC A 4 ? 0.4870 0.4291 0.4912 -0.0042 -0.0096 -0.0172 4 DC A "C1'"
61 N N1 . DC A 4 ? 0.4778 0.4115 0.4796 -0.0148 -0.0076 -0.0151 4 DC A N1
62 C C2 . DC A 4 ? 0.4547 0.3976 0.4552 -0.0188 -0.0062 -0.0136 4 DC A C2
63 O O2 . DC A 4 ? 0.4670 0.4160 0.4652 -0.0203 -0.0059 -0.0136 4 DC A O2
64 N N3 . DC A 4 ? 0.4337 0.3789 0.4299 -0.0208 -0.0051 -0.0130 4 DC A N3
65 C C4 . DC A 4 ? 0.4521 0.3991 0.4499 -0.0266 -0.0046 -0.0143 4 DC A C4
66 N N4 . DC A 4 ? 0.4280 0.3944 0.4237 -0.0284 -0.0035 -0.0153 4 DC A N4
67 C C5 . DC A 4 ? 0.4667 0.3945 0.4617 -0.0306 -0.0052 -0.0155 4 DC A C5
68 C C6 . DC A 4 ? 0.4740 0.3916 0.4689 -0.0206 -0.0071 -0.0156 4 DC A C6
69 P P . DG A 5 ? 0.5734 0.5908 0.5837 0.0308 -0.0189 -0.0204 5 DG A P
70 O OP1 . DG A 5 ? 0.5762 0.6494 0.5992 0.0229 -0.0178 -0.0270 5 DG A OP1
71 O OP2 . DG A 5 ? 0.5849 0.5819 0.5778 0.0575 -0.0234 -0.0182 5 DG A OP2
72 O "O5'" . DG A 5 ? 0.5609 0.5568 0.5693 0.0124 -0.0178 -0.0134 5 DG A "O5'"
73 C "C5'" . DG A 5 ? 0.5496 0.5500 0.5597 -0.0085 -0.0146 -0.0135 5 DG A "C5'"
74 C "C4'" . DG A 5 ? 0.5638 0.5405 0.5658 -0.0136 -0.0149 -0.0072 5 DG A "C4'"
75 O "O4'" . DG A 5 ? 0.5625 0.5136 0.5617 -0.0113 -0.0133 -0.0044 5 DG A "O4'"
76 C "C3'" . DG A 5 ? 0.5847 0.5672 0.5845 -0.0052 -0.0191 -0.0034 5 DG A "C3'"
77 O "O3'" . DG A 5 ? 0.6330 0.6140 0.6259 -0.0162 -0.0193 -0.0016 5 DG A "O3'"
78 C "C2'" . DG A 5 ? 0.5754 0.5267 0.5675 0.0037 -0.0191 0.0021 5 DG A "C2'"
79 C "C1'" . DG A 5 ? 0.5566 0.4950 0.5495 -0.0082 -0.0149 0.0017 5 DG A "C1'"
80 N N9 . DG A 5 ? 0.5528 0.4692 0.5393 -0.0105 -0.0130 0.0031 5 DG A N9
81 C C8 . DG A 5 ? 0.5688 0.4591 0.5417 -0.0043 -0.0137 0.0040 5 DG A C8
82 N N7 . DG A 5 ? 0.5826 0.4536 0.5459 -0.0174 -0.0105 0.0040 5 DG A N7
83 C C5 . DG A 5 ? 0.5613 0.4589 0.5379 -0.0280 -0.0082 0.0029 5 DG A C5
84 C C6 . DG A 5 ? 0.5712 0.4799 0.5475 -0.0431 -0.0048 0.0008 5 DG A C6
85 O O6 . DG A 5 ? 0.6175 0.5128 0.5817 -0.0585 -0.0023 -0.0006 5 DG A O6
86 N N1 . DG A 5 ? 0.5357 0.4752 0.5218 -0.0395 -0.0044 -0.0005 5 DG A N1
87 C C2 . DG A 5 ? 0.5192 0.4622 0.5074 -0.0279 -0.0063 0.0004 5 DG A C2
88 N N2 . DG A 5 ? 0.5318 0.4900 0.5155 -0.0220 -0.0056 -0.0010 5 DG A N2
89 N N3 . DG A 5 ? 0.5203 0.4531 0.5094 -0.0226 -0.0087 0.0017 5 DG A N3
90 C C4 . DG A 5 ? 0.5337 0.4513 0.5204 -0.0211 -0.0098 0.0028 5 DG A C4
91 P P . DG A 6 ? 0.6783 0.6765 0.6685 -0.0117 -0.0241 0.0003 6 DG A P
92 O OP1 . DG A 6 ? 0.6894 0.6777 0.6669 -0.0260 -0.0235 0.0001 6 DG A OP1
93 O OP2 . DG A 6 ? 0.6577 0.6978 0.6566 -0.0025 -0.0275 -0.0051 6 DG A OP2
94 O "O5'" . DG A 6 ? 0.6827 0.6556 0.6669 0.0023 -0.0249 0.0086 6 DG A "O5'"
95 C "C5'" . DG A 6 ? 0.7099 0.6894 0.6873 0.0155 -0.0293 0.0126 6 DG A "C5'"
96 C "C4'" . DG A 6 ? 0.7165 0.6827 0.6853 0.0091 -0.0287 0.0183 6 DG A "C4'"
97 O "O4'" . DG A 6 ? 0.6941 0.6325 0.6581 0.0033 -0.0238 0.0232 6 DG A "O4'"
98 C "C3'" . DG A 6 ? 0.7323 0.7002 0.6897 0.0232 -0.0328 0.0243 6 DG A "C3'"
99 O "O3'" . DG A 6 ? 0.7724 0.7566 0.7281 0.0162 -0.0349 0.0230 6 DG A "O3'"
100 C "C2'" . DG A 6 ? 0.7237 0.6515 0.6652 0.0244 -0.0290 0.0337 6 DG A "C2'"
101 C "C1'" . DG A 6 ? 0.6961 0.6205 0.6464 0.0065 -0.0237 0.0315 6 DG A "C1'"
102 N N9 . DG A 6 ? 0.6660 0.5661 0.6077 -0.0022 -0.0186 0.0358 6 DG A N9
103 C C8 . DG A 6 ? 0.6929 0.5584 0.6144 -0.0005 -0.0172 0.0406 6 DG A C8
104 N N7 . DG A 6 ? 0.7034 0.5552 0.6171 -0.0191 -0.0114 0.0424 6 DG A N7
105 C C5 . DG A 6 ? 0.6680 0.5561 0.6015 -0.0273 -0.0096 0.0385 6 DG A C5
106 C C6 . DG A 6 ? 0.6742 0.5818 0.6114 -0.0438 -0.0045 0.0368 6 DG A C6
107 O O6 . DG A 6 ? 0.7081 0.6074 0.6339 -0.0629 0.0004 0.0378 6 DG A O6
108 N N1 . DG A 6 ? 0.6376 0.5784 0.5882 -0.0368 -0.0053 0.0322 6 DG A N1
109 C C2 . DG A 6 ? 0.6227 0.5653 0.5767 -0.0229 -0.0098 0.0299 6 DG A C2
110 N N2 . DG A 6 ? 0.6302 0.5893 0.5828 -0.0163 -0.0097 0.0257 6 DG A N2
111 N N3 . DG A 6 ? 0.6362 0.5661 0.5898 -0.0158 -0.0140 0.0308 6 DG A N3
112 C C4 . DG A 6 ? 0.6482 0.5568 0.5942 -0.0156 -0.0140 0.0350 6 DG A C4
113 P P . DA A 7 ? 0.8373 0.8526 0.7883 0.0293 -0.0418 0.0224 7 DA A P
114 O OP1 . DA A 7 ? 0.8179 0.8668 0.7763 0.0435 -0.0456 0.0165 7 DA A OP1
115 O OP2 . DA A 7 ? 0.8694 0.8599 0.8027 0.0404 -0.0418 0.0335 7 DA A OP2
116 O "O5'" . DA A 7 ? 0.8364 0.8735 0.7888 0.0085 -0.0430 0.0136 7 DA A "O5'"
117 C "C5'" . DA A 7 ? 0.8156 0.8741 0.7747 -0.0101 -0.0423 0.0029 7 DA A "C5'"
118 C "C4'" . DA A 7 ? 0.8081 0.8349 0.7515 -0.0314 -0.0385 -0.0006 7 DA A "C4'"
119 O "O4'" . DA A 7 ? 0.7660 0.7557 0.7080 -0.0253 -0.0336 0.0056 7 DA A "O4'"
120 C "C3'" . DA A 7 ? 0.8257 0.8407 0.7491 -0.0362 -0.0407 -0.0014 7 DA A "C3'"
121 O "O3'" . DA A 7 ? 0.8735 0.9130 0.7862 -0.0568 -0.0440 -0.0119 7 DA A "O3'"
122 C "C2'" . DA A 7 ? 0.8214 0.7888 0.7242 -0.0409 -0.0358 -0.0010 7 DA A "C2'"
123 C "C1'" . DA A 7 ? 0.7579 0.7177 0.6776 -0.0301 -0.0318 0.0051 7 DA A "C1'"
124 N N9 . DA A 7 ? 0.7275 0.6772 0.6490 -0.0156 -0.0298 0.0135 7 DA A N9
125 C C8 . DA A 7 ? 0.6957 0.6528 0.6300 -0.0059 -0.0292 0.0216 7 DA A C8
126 N N7 . DA A 7 ? 0.6918 0.6412 0.6216 -0.0023 -0.0257 0.0272 7 DA A N7
127 C C5 . DA A 7 ? 0.6887 0.6296 0.6036 -0.0023 -0.0247 0.0221 7 DA A C5
128 C C6 . DA A 7 ? 0.7005 0.6419 0.6037 0.0057 -0.0217 0.0230 7 DA A C6
129 N N6 . DA A 7 ? 0.7061 0.6655 0.6163 0.0072 -0.0180 0.0293 7 DA A N6
130 N N1 . DA A 7 ? 0.7256 0.6483 0.6036 0.0121 -0.0221 0.0163 7 DA A N1
131 C C2 . DA A 7 ? 0.7498 0.6481 0.6129 0.0027 -0.0245 0.0099 7 DA A C2
132 N N3 . DA A 7 ? 0.7246 0.6296 0.6009 -0.0124 -0.0267 0.0080 7 DA A N3
133 C C4 . DA A 7 ? 0.7084 0.6394 0.6131 -0.0105 -0.0271 0.0142 7 DA A C4
134 P P . DT A 8 ? 0.9595 1.0146 0.8603 -0.0557 -0.0497 -0.0140 8 DT A P
135 O OP1 . DT A 8 ? 0.9886 1.0732 0.8769 -0.0861 -0.0523 -0.0279 8 DT A OP1
136 O OP2 . DT A 8 ? 0.9337 1.0134 0.8520 -0.0269 -0.0532 -0.0047 8 DT A OP2
137 O "O5'" . DT A 8 ? 0.9425 0.9411 0.8166 -0.0516 -0.0468 -0.0102 8 DT A "O5'"
138 C "C5'" . DT A 8 ? 0.9460 0.8948 0.7871 -0.0665 -0.0430 -0.0159 8 DT A "C5'"
139 C "C4'" . DT A 8 ? 0.9392 0.8507 0.7624 -0.0459 -0.0408 -0.0101 8 DT A "C4'"
140 O "O4'" . DT A 8 ? 0.8754 0.7999 0.7275 -0.0260 -0.0378 0.0008 8 DT A "O4'"
141 C "C3'" . DT A 8 ? 0.9413 0.8583 0.7513 -0.0381 -0.0448 -0.0103 8 DT A "C3'"
142 O "O3'" . DT A 8 ? 1.0116 0.8810 0.7812 -0.0290 -0.0430 -0.0130 8 DT A "O3'"
143 C "C2'" . DT A 8 ? 0.8895 0.8382 0.7319 -0.0176 -0.0445 0.0020 8 DT A "C2'"
144 C "C1'" . DT A 8 ? 0.8557 0.7899 0.7086 -0.0103 -0.0386 0.0074 8 DT A "C1'"
145 N N1 . DT A 8 ? 0.7756 0.7305 0.6567 -0.0008 -0.0366 0.0180 8 DT A N1
146 C C2 . DT A 8 ? 0.7373 0.6896 0.6198 0.0084 -0.0317 0.0249 8 DT A C2
147 O O2 . DT A 8 ? 0.7479 0.6909 0.6135 0.0151 -0.0295 0.0224 8 DT A O2
148 N N3 . DT A 8 ? 0.7055 0.6668 0.6042 0.0097 -0.0293 0.0341 8 DT A N3
149 C C4 . DT A 8 ? 0.7141 0.6796 0.6227 0.0108 -0.0320 0.0373 8 DT A C4
150 O O4 . DT A 8 ? 0.7478 0.7052 0.6576 0.0130 -0.0291 0.0457 8 DT A O4
151 C C5 . DT A 8 ? 0.7172 0.6972 0.6280 0.0087 -0.0380 0.0294 8 DT A C5
152 C C7 . DT A 8 ? 0.7164 0.7137 0.6359 0.0177 -0.0420 0.0308 8 DT A C7
153 C C6 . DT A 8 ? 0.7487 0.7259 0.6477 -0.0010 -0.0396 0.0200 8 DT A C6
154 P P . DG A 9 ? 1.0587 0.9227 0.8038 -0.0170 -0.0462 -0.0147 9 DG A P
155 O OP1 . DG A 9 ? 1.1219 0.9279 0.8149 -0.0053 -0.0443 -0.0204 9 DG A OP1
156 O OP2 . DG A 9 ? 1.0694 0.9599 0.8160 -0.0359 -0.0521 -0.0211 9 DG A OP2
157 O "O5'" . DG A 9 ? 1.0099 0.9112 0.7888 0.0062 -0.0438 -0.0013 9 DG A "O5'"
158 C "C5'" . DG A 9 ? 0.9541 0.8531 0.7358 0.0245 -0.0384 0.0045 9 DG A "C5'"
159 C "C4'" . DG A 9 ? 0.9179 0.8552 0.7227 0.0347 -0.0362 0.0156 9 DG A "C4'"
160 O "O4'" . DG A 9 ? 0.8631 0.8208 0.6991 0.0250 -0.0367 0.0231 9 DG A "O4'"
161 C "C3'" . DG A 9 ? 0.9257 0.8705 0.7126 0.0420 -0.0393 0.0150 9 DG A "C3'"
162 O "O3'" . DG A 9 ? 0.9599 0.9289 0.7473 0.0570 -0.0346 0.0222 9 DG A "O3'"
163 C "C2'" . DG A 9 ? 0.8903 0.8563 0.6970 0.0319 -0.0435 0.0193 9 DG A "C2'"
164 C "C1'" . DG A 9 ? 0.8374 0.8132 0.6739 0.0282 -0.0398 0.0282 9 DG A "C1'"
165 N N9 . DG A 9 ? 0.7860 0.7743 0.6383 0.0221 -0.0442 0.0287 9 DG A N9
166 C C8 . DG A 9 ? 0.7808 0.7805 0.6294 0.0133 -0.0507 0.0187 9 DG A C8
167 N N7 . DG A 9 ? 0.7745 0.7984 0.6404 0.0151 -0.0539 0.0207 9 DG A N7
168 C C5 . DG A 9 ? 0.7635 0.7770 0.6391 0.0259 -0.0491 0.0332 9 DG A C5
169 C C6 . DG A 9 ? 0.7772 0.7955 0.6616 0.0367 -0.0499 0.0402 9 DG A C6
170 O O6 . DG A 9 ? 0.8044 0.8486 0.6944 0.0445 -0.0556 0.0365 9 DG A O6
171 N N1 . DG A 9 ? 0.7683 0.7591 0.6492 0.0392 -0.0432 0.0517 9 DG A N1
172 C C2 . DG A 9 ? 0.7760 0.7544 0.6531 0.0309 -0.0365 0.0551 9 DG A C2
173 N N2 . DG A 9 ? 0.7834 0.7433 0.6561 0.0271 -0.0300 0.0649 9 DG A N2
174 N N3 . DG A 9 ? 0.7698 0.7546 0.6423 0.0274 -0.0363 0.0484 9 DG A N3
175 C C4 . DG A 9 ? 0.7604 0.7549 0.6293 0.0258 -0.0428 0.0380 9 DG A C4
176 P P . DA A 10 ? 1.0366 1.0004 0.7871 0.0775 -0.0352 0.0155 10 DA A P
177 O OP1 . DA A 10 ? 1.0637 0.9811 0.7779 0.0855 -0.0371 0.0032 10 DA A OP1
178 O OP2 . DA A 10 ? 1.0699 1.0429 0.8129 0.0761 -0.0394 0.0164 10 DA A OP2
179 O "O5'" . DA A 10 ? 0.9929 1.0008 0.7558 0.0899 -0.0275 0.0231 10 DA A "O5'"
180 C "C5'" . DA A 10 ? 0.9835 1.0016 0.7526 0.0964 -0.0232 0.0216 10 DA A "C5'"
181 C "C4'" . DA A 10 ? 0.9518 1.0230 0.7494 0.0865 -0.0156 0.0322 10 DA A "C4'"
182 O "O4'" . DA A 10 ? 0.8956 0.9540 0.7166 0.0621 -0.0156 0.0413 10 DA A "O4'"
183 C "C3'" . DA A 10 ? 0.9716 1.0825 0.7615 0.0924 -0.0122 0.0371 10 DA A "C3'"
184 O "O3'" . DA A 10 ? 1.0732 1.2274 0.8477 0.1169 -0.0089 0.0308 10 DA A "O3'"
185 C "C2'" . DA A 10 ? 0.9230 1.0511 0.7354 0.0647 -0.0064 0.0513 10 DA A "C2'"
186 C "C1'" . DA A 10 ? 0.8655 0.9529 0.6940 0.0496 -0.0096 0.0530 10 DA A "C1'"
187 N N9 . DA A 10 ? 0.7979 0.8578 0.6282 0.0397 -0.0131 0.0608 10 DA A N9
188 C C8 . DA A 10 ? 0.7809 0.8119 0.6103 0.0431 -0.0214 0.0557 10 DA A C8
189 N N7 . DA A 10 ? 0.7650 0.7855 0.5963 0.0380 -0.0234 0.0640 10 DA A N7
190 C C5 . DA A 10 ? 0.7669 0.7950 0.5943 0.0284 -0.0155 0.0766 10 DA A C5
191 C C6 . DA A 10 ? 0.7805 0.7897 0.5952 0.0215 -0.0130 0.0903 10 DA A C6
192 N N6 . DA A 10 ? 0.8034 0.7905 0.6111 0.0316 -0.0197 0.0934 10 DA A N6
193 N N1 . DA A 10 ? 0.7983 0.8121 0.6014 0.0042 -0.0031 0.1005 10 DA A N1
194 C C2 . DA A 10 ? 0.7932 0.8457 0.6052 -0.0041 0.0033 0.0958 10 DA A C2
195 N N3 . DA A 10 ? 0.7746 0.8547 0.6006 0.0089 0.0008 0.0827 10 DA A N3
196 C C4 . DA A 10 ? 0.7660 0.8235 0.5956 0.0249 -0.0086 0.0742 10 DA A C4
197 P P . DT A 11 ? 1.1034 1.3059 0.8910 0.1212 -0.0034 0.0278 11 DT A P
198 O OP1 . DT A 11 ? 1.1409 1.3099 0.9012 0.1522 -0.0088 0.0155 11 DT A OP1
199 O OP2 . DT A 11 ? 1.0997 1.3833 0.8921 0.1211 0.0045 0.0308 11 DT A OP2
#