data_4R0U
#
_entry.id 4R0U
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4R0U pdb_00004r0u 10.2210/pdb4r0u/pdb
RCSB RCSB086757 ? ?
WWPDB D_1000086757 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2014-12-17
2 'Structure model' 1 1 2015-01-14
3 'Structure model' 1 2 2024-02-28
4 'Structure model' 1 3 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 4R0U
_pdbx_database_status.status_code REL
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2014-08-01
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Ivanova, M.I.' 1
'Eisenberg, D.S.' 2
'Sawaya, M.R.' 3
#
_citation.id primary
_citation.title 'Structure-based design of functional amyloid materials.'
_citation.journal_abbrev J.Am.Chem.Soc.
_citation.journal_volume 136
_citation.page_first 18044
_citation.page_last 18051
_citation.year 2014
_citation.journal_id_ASTM JACSAT
_citation.country US
_citation.journal_id_ISSN 0002-7863
_citation.journal_id_CSD 0004
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 25474758
_citation.pdbx_database_id_DOI 10.1021/ja509648u
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Li, D.' 1 ?
primary 'Jones, E.M.' 2 ?
primary 'Sawaya, M.R.' 3 ?
primary 'Furukawa, H.' 4 ?
primary 'Luo, F.' 5 ?
primary 'Ivanova, M.' 6 ?
primary 'Sievers, S.A.' 7 ?
primary 'Wang, W.' 8 ?
primary 'Yaghi, O.M.' 9 ?
primary 'Liu, C.' 10 ?
primary 'Eisenberg, D.S.' 11 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn Alpha-synuclein 617.692 1 ? ? 'UNP RESIDUES 72-78' ?
2 water nat water 18.015 7 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Non-A beta component of AD amyloid, Non-A4 component of amyloid precursor, NACP'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code TGVTAVA
_entity_poly.pdbx_seq_one_letter_code_can TGVTAVA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 GLY n
1 3 VAL n
1 4 THR n
1 5 ALA n
1 6 VAL n
1 7 ALA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details 'TGVTAVA (residues 72-78) from Human alpha-synuclein, synthesized'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR A . n
A 1 2 GLY 2 2 2 GLY GLY A . n
A 1 3 VAL 3 3 3 VAL VAL A . n
A 1 4 THR 4 4 4 THR THR A . n
A 1 5 ALA 5 5 5 ALA ALA A . n
A 1 6 VAL 6 6 6 VAL VAL A . n
A 1 7 ALA 7 7 7 ALA ALA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 2 HOH HOH A .
B 2 HOH 3 103 3 HOH HOH A .
B 2 HOH 4 104 4 HOH HOH A .
B 2 HOH 5 105 5 HOH HOH A .
B 2 HOH 6 106 6 HOH HOH A .
B 2 HOH 7 107 7 HOH HOH A .
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ?
2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
3 PHASER 1.3.2 'Wed Feb 15 11:59:26 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
4 REFMAC 5.8.0073 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
5 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
#
_cell.length_a 15.584
_cell.length_b 4.742
_cell.length_c 25.806
_cell.angle_alpha 90.000
_cell.angle_beta 98.960
_cell.angle_gamma 90.000
_cell.entry_id 4R0U
_cell.pdbx_unique_axis ?
_cell.Z_PDB 2
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 1 21 1'
_symmetry.entry_id 4R0U
_symmetry.Int_Tables_number 4
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 4R0U
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.pdbx_mosaicity 0.600
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.density_Matthews 1.52
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_percent_sol 19.34
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.pdbx_details '0.2M magnesium formate, vapor diffusion, hanging drop, temperature 298K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2007-07-13
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.895432
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_wavelength_list 0.895432
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
#
_reflns.entry_id 4R0U
_reflns.d_resolution_high 1.38
_reflns.d_resolution_low 90.000
_reflns.number_obs 798
_reflns.pdbx_Rmerge_I_obs 0.151
_reflns.pdbx_netI_over_sigmaI 8.400
_reflns.pdbx_chi_squared 1.125
_reflns.pdbx_redundancy 3.400
_reflns.percent_possible_obs 83.800
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3.0
_reflns.number_all 798
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 18.5
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.pdbx_rejects
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.meanI_over_sigI_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.400 1.510 ? ? ? 0 0.229 ? ? 1.017 1.800 ? ? ? 115 ? ? ? ? 61.200 ? ? 1 1
1.510 1.660 ? ? ? 0 0.329 ? ? 1.107 2.400 ? ? ? 136 ? ? ? ? 71.200 ? ? 2 1
1.660 1.900 ? ? ? 0 0.262 ? ? 1.123 3.600 ? ? ? 155 ? ? ? ? 94.500 ? ? 3 1
1.900 2.390 ? ? ? 0 0.205 ? ? 1.091 4.300 ? ? ? 197 ? ? ? ? 96.600 ? ? 4 1
2.390 90.000 ? ? ? 0 0.130 ? ? 1.185 4.100 ? ? ? 195 ? ? ? ? 95.100 ? ? 5 1
#
_refine.entry_id 4R0U
_refine.ls_d_res_high 1.3800
_refine.ls_d_res_low 25.4900
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 86.1800
_refine.ls_number_reflns_obs 798
_refine.ls_number_reflns_all 798
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY'
_refine.ls_R_factor_all 0.2045
_refine.ls_R_factor_obs 0.2045
_refine.ls_R_factor_R_work 0.2027
_refine.ls_wR_factor_R_work 0.2378
_refine.ls_R_factor_R_free 0.2175
_refine.ls_wR_factor_R_free 0.2528
_refine.ls_percent_reflns_R_free 11.3000
_refine.ls_number_reflns_R_free 90
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 16.6240
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] 0.3400
_refine.aniso_B[2][2] -0.2100
_refine.aniso_B[3][3] -0.1900
_refine.aniso_B[1][2] -0.0000
_refine.aniso_B[1][3] 0.2200
_refine.aniso_B[2][3] -0.0000
_refine.correlation_coeff_Fo_to_Fc 0.9650
_refine.correlation_coeff_Fo_to_Fc_free 0.9670
_refine.overall_SU_R_Cruickshank_DPI 0.0960
_refine.overall_SU_R_free 0.0873
_refine.pdbx_overall_ESU_R 0.0960
_refine.pdbx_overall_ESU_R_Free 0.0870
_refine.overall_SU_ML 0.0770
_refine.overall_SU_B 2.3360
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.4000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model 'ideal beta strand'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set 0.7067
_refine.B_iso_max 41.770
_refine.B_iso_min 8.240
_refine.pdbx_overall_phase_error ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 43
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 7
_refine_hist.number_atoms_total 50
_refine_hist.d_res_high 1.3800
_refine_hist.d_res_low 25.4900
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 42 0.010 0.020 ? ? 'X-RAY DIFFRACTION'
r_bond_other_d 45 0.002 0.020 ? ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 58 1.312 1.974 ? ? 'X-RAY DIFFRACTION'
r_angle_other_deg 101 0.544 3.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg 6 4.887 5.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg 4 3.831 15.000 ? ? 'X-RAY DIFFRACTION'
r_chiral_restr 10 0.060 0.200 ? ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 46 0.002 0.020 ? ? 'X-RAY DIFFRACTION'
r_gen_planes_other 6 0.000 0.020 ? ? 'X-RAY DIFFRACTION'
r_mcbond_it 27 3.692 2.027 ? ? 'X-RAY DIFFRACTION'
r_mcbond_other 26 2.327 1.911 ? ? 'X-RAY DIFFRACTION'
r_mcangle_it 31 5.827 3.254 ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.d_res_high 1.3800
_refine_ls_shell.d_res_low 1.5420
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.percent_reflns_obs 68.9400
_refine_ls_shell.number_reflns_R_work 163
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.3230
_refine_ls_shell.R_factor_R_free 0.3460
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 19
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 182
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.redundancy_reflns_obs ?
#
_struct.entry_id 4R0U
_struct.title 'Tgvtava, an amyloid forming segment from alpha synuclein, residues 72-78'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4R0U
_struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code SYUA_HUMAN
_struct_ref.pdbx_db_accession P37840
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code TGVTAVA
_struct_ref.pdbx_align_begin 72
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4R0U
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P37840
_struct_ref_seq.db_align_beg 72
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 78
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details decameric
_pdbx_struct_assembly.oligomeric_count 10
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.4840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -4.7420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.7420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.4840000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000
1.0000000000 0.0000000000 2.3710000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271
7 'crystal symmetry operation' 2_636 -x+1,y-3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000
1.0000000000 0.0000000000 -7.1130000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271
8 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000
1.0000000000 0.0000000000 -2.3710000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271
9 'crystal symmetry operation' 2_666 -x+1,y+3/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000
1.0000000000 0.0000000000 7.1130000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271
10 'crystal symmetry operation' 2_676 -x+1,y+5/2,-z+1 -1.0000000000 0.0000000000 0.0000000000 11.5648473575 0.0000000000
1.0000000000 0.0000000000 11.8550000000 0.0000000000 0.0000000000 -1.0000000000 25.4910974271
#
_struct_biol.id 1
_struct_biol.details
;There are two choices of the biological unit. The first choice is a pair of indefinitely long beta sheets constructed from chain A and unit cell translations along the b direction (that is, the b direction corresponds to the fiber axis) (i.e. X,Y,Z; X,Y+1,Z; X,Y+2,Z; etc.) together with a symmetry related sheet formed from 1-X,Y+1/2,1-Z and its unit cell translations along the b direction (i.e. 1-x,y+3/2,1-z; 1-x,y+5/2,1-z, etc.). The second choice of biological unit is a pair of beta sheets constructed from chain A and unit cell translations along the b direction (i.e. X,Y,Z; X,Y+1,Z; X,Y+2,Z; etc.) together with a symmetry related sheet formed from -X,1/2+Y,1-Z and its unit cell translations along the b direction (i.e. -x,y+3/2,1-z; -x,y+5/2,1-z; etc.). REMARK 350 displays 5 strands from both sheets for the first choice.
;
#
_pdbx_phasing_MR.entry_id 4R0U
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 1.600
_pdbx_phasing_MR.d_res_low_rotation 25.490
_pdbx_phasing_MR.d_res_high_translation 1.600
_pdbx_phasing_MR.d_res_low_translation 25.490
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLY N N N N 14
GLY CA C N N 15
GLY C C N N 16
GLY O O N N 17
GLY OXT O N N 18
GLY H H N N 19
GLY H2 H N N 20
GLY HA2 H N N 21
GLY HA3 H N N 22
GLY HXT H N N 23
HOH O O N N 24
HOH H1 H N N 25
HOH H2 H N N 26
THR N N N N 27
THR CA C N S 28
THR C C N N 29
THR O O N N 30
THR CB C N R 31
THR OG1 O N N 32
THR CG2 C N N 33
THR OXT O N N 34
THR H H N N 35
THR H2 H N N 36
THR HA H N N 37
THR HB H N N 38
THR HG1 H N N 39
THR HG21 H N N 40
THR HG22 H N N 41
THR HG23 H N N 42
THR HXT H N N 43
VAL N N N N 44
VAL CA C N S 45
VAL C C N N 46
VAL O O N N 47
VAL CB C N N 48
VAL CG1 C N N 49
VAL CG2 C N N 50
VAL OXT O N N 51
VAL H H N N 52
VAL H2 H N N 53
VAL HA H N N 54
VAL HB H N N 55
VAL HG11 H N N 56
VAL HG12 H N N 57
VAL HG13 H N N 58
VAL HG21 H N N 59
VAL HG22 H N N 60
VAL HG23 H N N 61
VAL HXT H N N 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLY N CA sing N N 13
GLY N H sing N N 14
GLY N H2 sing N N 15
GLY CA C sing N N 16
GLY CA HA2 sing N N 17
GLY CA HA3 sing N N 18
GLY C O doub N N 19
GLY C OXT sing N N 20
GLY OXT HXT sing N N 21
HOH O H1 sing N N 22
HOH O H2 sing N N 23
THR N CA sing N N 24
THR N H sing N N 25
THR N H2 sing N N 26
THR CA C sing N N 27
THR CA CB sing N N 28
THR CA HA sing N N 29
THR C O doub N N 30
THR C OXT sing N N 31
THR CB OG1 sing N N 32
THR CB CG2 sing N N 33
THR CB HB sing N N 34
THR OG1 HG1 sing N N 35
THR CG2 HG21 sing N N 36
THR CG2 HG22 sing N N 37
THR CG2 HG23 sing N N 38
THR OXT HXT sing N N 39
VAL N CA sing N N 40
VAL N H sing N N 41
VAL N H2 sing N N 42
VAL CA C sing N N 43
VAL CA CB sing N N 44
VAL CA HA sing N N 45
VAL C O doub N N 46
VAL C OXT sing N N 47
VAL CB CG1 sing N N 48
VAL CB CG2 sing N N 49
VAL CB HB sing N N 50
VAL CG1 HG11 sing N N 51
VAL CG1 HG12 sing N N 52
VAL CG1 HG13 sing N N 53
VAL CG2 HG21 sing N N 54
VAL CG2 HG22 sing N N 55
VAL CG2 HG23 sing N N 56
VAL OXT HXT sing N N 57
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'ideal beta strand'
#
_atom_sites.entry_id 4R0U
_atom_sites.fract_transf_matrix[1][1] 0.064168
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.010112
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.210881
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.039229
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . THR A 1 1 ? -1.175 -1.984 5.065 1.00 31.90 ? 1 THR A N 1
ATOM 2 C CA . THR A 1 1 ? -0.442 -1.664 3.800 1.00 28.55 ? 1 THR A CA 1
ATOM 3 C C . THR A 1 1 ? 0.725 -0.766 4.131 1.00 25.57 ? 1 THR A C 1
ATOM 4 O O . THR A 1 1 ? 0.606 0.129 4.975 1.00 26.52 ? 1 THR A O 1
ATOM 5 C CB . THR A 1 1 ? -1.323 -0.912 2.785 1.00 30.97 ? 1 THR A CB 1
ATOM 6 O OG1 . THR A 1 1 ? -2.489 -1.691 2.472 1.00 25.85 ? 1 THR A OG1 1
ATOM 7 C CG2 . THR A 1 1 ? -0.535 -0.613 1.506 1.00 31.78 ? 1 THR A CG2 1
ATOM 8 N N . GLY A 1 2 ? 1.839 -0.990 3.446 1.00 18.47 ? 2 GLY A N 1
ATOM 9 C CA . GLY A 1 2 ? 3.065 -0.303 3.768 1.00 17.82 ? 2 GLY A CA 1
ATOM 10 C C . GLY A 1 2 ? 3.651 -0.916 5.018 1.00 14.98 ? 2 GLY A C 1
ATOM 11 O O . GLY A 1 2 ? 3.602 -2.132 5.204 1.00 17.04 ? 2 GLY A O 1
ATOM 12 N N . VAL A 1 3 ? 4.191 -0.072 5.884 1.00 12.34 ? 3 VAL A N 1
ATOM 13 C CA . VAL A 1 3 ? 4.831 -0.535 7.104 1.00 10.85 ? 3 VAL A CA 1
ATOM 14 C C . VAL A 1 3 ? 4.083 0.069 8.266 1.00 10.31 ? 3 VAL A C 1
ATOM 15 O O . VAL A 1 3 ? 3.989 1.288 8.375 1.00 10.77 ? 3 VAL A O 1
ATOM 16 C CB . VAL A 1 3 ? 6.300 -0.119 7.123 1.00 11.88 ? 3 VAL A CB 1
ATOM 17 C CG1 . VAL A 1 3 ? 6.995 -0.639 8.358 1.00 12.70 ? 3 VAL A CG1 1
ATOM 18 C CG2 . VAL A 1 3 ? 6.981 -0.641 5.872 1.00 12.94 ? 3 VAL A CG2 1
ATOM 19 N N . THR A 1 4 ? 3.545 -0.784 9.122 1.00 8.78 ? 4 THR A N 1
ATOM 20 C CA . THR A 1 4 ? 2.661 -0.345 10.163 1.00 9.30 ? 4 THR A CA 1
ATOM 21 C C . THR A 1 4 ? 3.038 -0.997 11.461 1.00 8.80 ? 4 THR A C 1
ATOM 22 O O . THR A 1 4 ? 3.188 -2.210 11.534 1.00 9.31 ? 4 THR A O 1
ATOM 23 C CB . THR A 1 4 ? 1.210 -0.709 9.820 1.00 10.28 ? 4 THR A CB 1
ATOM 24 O OG1 . THR A 1 4 ? 0.885 -0.143 8.550 1.00 15.19 ? 4 THR A OG1 1
ATOM 25 C CG2 . THR A 1 4 ? 0.250 -0.180 10.854 1.00 11.88 ? 4 THR A CG2 1
ATOM 26 N N . ALA A 1 5 ? 3.197 -0.180 12.485 1.00 8.24 ? 5 ALA A N 1
ATOM 27 C CA . ALA A 1 5 ? 3.483 -0.681 13.804 1.00 8.70 ? 5 ALA A CA 1
ATOM 28 C C . ALA A 1 5 ? 2.476 -0.036 14.733 1.00 8.82 ? 5 ALA A C 1
ATOM 29 O O . ALA A 1 5 ? 2.330 1.179 14.740 1.00 8.97 ? 5 ALA A O 1
ATOM 30 C CB . ALA A 1 5 ? 4.914 -0.337 14.200 1.00 9.63 ? 5 ALA A CB 1
ATOM 31 N N . VAL A 1 6 ? 1.779 -0.860 15.500 1.00 9.67 ? 6 VAL A N 1
ATOM 32 C CA . VAL A 1 6 ? 0.747 -0.403 16.419 1.00 10.56 ? 6 VAL A CA 1
ATOM 33 C C . VAL A 1 6 ? 0.972 -1.064 17.762 1.00 13.04 ? 6 VAL A C 1
ATOM 34 O O . VAL A 1 6 ? 1.025 -2.274 17.841 1.00 13.74 ? 6 VAL A O 1
ATOM 35 C CB . VAL A 1 6 ? -0.651 -0.798 15.921 1.00 11.93 ? 6 VAL A CB 1
ATOM 36 C CG1 . VAL A 1 6 ? -1.725 -0.264 16.861 1.00 14.13 ? 6 VAL A CG1 1
ATOM 37 C CG2 . VAL A 1 6 ? -0.874 -0.291 14.511 1.00 11.70 ? 6 VAL A CG2 1
ATOM 38 N N . ALA A 1 7 ? 1.111 -0.286 18.825 1.00 16.98 ? 7 ALA A N 1
ATOM 39 C CA . ALA A 1 7 ? 1.355 -0.884 20.153 1.00 21.40 ? 7 ALA A CA 1
ATOM 40 C C . ALA A 1 7 ? 0.088 -1.484 20.771 1.00 28.45 ? 7 ALA A C 1
ATOM 41 O O . ALA A 1 7 ? 0.126 -2.064 21.867 1.00 41.77 ? 7 ALA A O 1
ATOM 42 C CB . ALA A 1 7 ? 2.002 0.114 21.100 1.00 28.04 ? 7 ALA A CB 1
ATOM 43 O OXT . ALA A 1 7 ? -0.998 -1.446 20.187 1.00 26.66 ? 7 ALA A OXT 1
HETATM 44 O O . HOH B 2 . ? 1.096 2.123 6.990 1.00 15.46 ? 101 HOH A O 1
HETATM 45 O O . HOH B 2 . ? 2.890 -2.582 1.283 1.00 19.26 ? 102 HOH A O 1
HETATM 46 O O . HOH B 2 . ? 5.705 -2.678 2.820 1.00 19.31 ? 103 HOH A O 1
HETATM 47 O O . HOH B 2 . ? 6.840 -0.231 2.170 1.00 26.87 ? 104 HOH A O 1
HETATM 48 O O . HOH B 2 . ? -6.061 -2.599 0.408 1.00 22.68 ? 105 HOH A O 1
HETATM 49 O O . HOH B 2 . ? -6.146 -0.237 1.896 1.00 21.37 ? 106 HOH A O 1
HETATM 50 O O . HOH B 2 . ? -3.213 -2.550 0.041 1.00 25.75 ? 107 HOH A O 1
#