data_4QXX
#
_entry.id 4QXX
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4QXX pdb_00004qxx 10.2210/pdb4qxx/pdb
RCSB RCSB086652 ? ?
WWPDB D_1000086652 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2015-03-18
2 'Structure model' 1 1 2015-04-08
3 'Structure model' 1 2 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4QXX
_pdbx_database_status.recvd_initial_deposition_date 2014-07-22
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Soriaga, A.B.' 1
'Soragni, A.' 2
'Sawaya, M.R.' 3
'Eisenberg, D.' 4
#
_citation.id primary
_citation.title
'Toxicity of Eosinophil MBP Is Repressed by Intracellular Crystallization and Promoted by Extracellular Aggregation.'
_citation.journal_abbrev Mol.Cell
_citation.journal_volume 57
_citation.page_first 1011
_citation.page_last 1021
_citation.year 2015
_citation.journal_id_ASTM MOCEFL
_citation.country US
_citation.journal_id_ISSN 1097-2765
_citation.journal_id_CSD 2168
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 25728769
_citation.pdbx_database_id_DOI 10.1016/j.molcel.2015.01.026
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Soragni, A.' 1 ?
primary 'Yousefi, S.' 2 ?
primary 'Stoeckle, C.' 3 ?
primary 'Soriaga, A.B.' 4 ?
primary 'Sawaya, M.R.' 5 ?
primary 'Kozlowski, E.' 6 ?
primary 'Schmid, I.' 7 ?
primary 'Radonjic-Hoesli, S.' 8 ?
primary 'Boutet, S.' 9 ?
primary 'Williams, G.J.' 10 ?
primary 'Messerschmidt, M.' 11 ?
primary 'Seibert, M.M.' 12 ?
primary 'Cascio, D.' 13 ?
primary 'Zatsepin, N.A.' 14 ?
primary 'Burghammer, M.' 15 ?
primary 'Riekel, C.' 16 ?
primary 'Colletier, J.P.' 17 ?
primary 'Riek, R.' 18 ?
primary 'Eisenberg, D.S.' 19 ?
primary 'Simon, H.U.' 20 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Bone marrow proteoglycan' 488.536 1 ? ? 'GNLVS peptide (UNP residues 131-135)' ?
2 water nat water 18.015 2 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'BMPG, Proteoglycan 2, Eosinophil granule major basic protein, EMBP, MBP, Pregnancy-associated major basic protein'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GNLVS
_entity_poly.pdbx_seq_one_letter_code_can GNLVS
_entity_poly.pdbx_strand_id Z
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 ASN n
1 3 LEU n
1 4 VAL n
1 5 SER n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'Homo sapiens'
_pdbx_entity_src_syn.organism_common_name human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY Z . n
A 1 2 ASN 2 2 2 ASN ASN Z . n
A 1 3 LEU 3 3 3 LEU LEU Z . n
A 1 4 VAL 4 4 4 VAL VAL Z . n
A 1 5 SER 5 5 5 SER SER Z . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH Z .
B 2 HOH 2 102 3 HOH HOH Z .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
ADSC 'data collection' Quantum ? 1
PHASER phasing . ? 2
PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3
DENZO 'data reduction' . ? 4
SCALEPACK 'data scaling' . ? 5
#
_cell.entry_id 4QXX
_cell.length_a 4.755
_cell.length_b 16.816
_cell.length_c 35.759
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4QXX
_symmetry.space_group_name_H-M 'P 2 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 18
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4QXX
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.46
_exptl_crystal.density_percent_sol 15.94
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.2
_exptl_crystal_grow.pdbx_details
'2 M ammonium sulfate, 0.1 M phosphate/citrate, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2012-06-06
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'cryogenically-cooled single crystal Si(220) side bounce'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9792
#
_reflns.entry_id 4QXX
_reflns.observed_criterion_sigma_I -3.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 100
_reflns.d_resolution_high 1.445
_reflns.number_obs 658
_reflns.number_all ?
_reflns.percent_possible_obs 98.7
_reflns.pdbx_Rmerge_I_obs 0.46
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 10.36
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 5.9
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.445
_reflns_shell.d_res_low 1.5
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.46
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 4.94
_reflns_shell.pdbx_redundancy 5.5
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 66
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4QXX
_refine.ls_number_reflns_obs 638
_refine.ls_number_reflns_all 638
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.41
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 17.879
_refine.ls_d_res_high 1.445
_refine.ls_percent_reflns_obs 98.00
_refine.ls_R_factor_obs 0.1674
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1641
_refine.ls_R_factor_R_free 0.1918
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.03
_refine.ls_number_reflns_R_free 64
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] -0.0695
_refine.aniso_B[2][2] -0.2246
_refine.aniso_B[3][3] 0.2940
_refine.aniso_B[1][2] -0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_ksol 0.375
_refine.solvent_model_param_bsol 49.587
_refine.pdbx_solvent_vdw_probe_radii 0.90
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.60
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.08
_refine.pdbx_overall_phase_error 21.28
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 34
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 2
_refine_hist.number_atoms_total 36
_refine_hist.d_res_high 1.445
_refine_hist.d_res_low 17.879
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 0.005 ? ? 33 ? 'X-RAY DIFFRACTION'
f_angle_d 1.269 ? ? 44 ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 9.426 ? ? 11 ? 'X-RAY DIFFRACTION'
f_chiral_restr 0.069 ? ? 6 ? 'X-RAY DIFFRACTION'
f_plane_restr 0.002 ? ? 6 ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used ?
_refine_ls_shell.d_res_high 1.445
_refine_ls_shell.d_res_low 17.8809
_refine_ls_shell.number_reflns_R_work 574
_refine_ls_shell.R_factor_R_work 0.1641
_refine_ls_shell.percent_reflns_obs 98.00
_refine_ls_shell.R_factor_R_free 0.1918
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 64
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 638
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 4QXX
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4QXX
_struct.title
'Structure of the amyloid forming peptide GNLVS (residues 26-30) from the eosinophil major basic protein (EMBP)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4QXX
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
_struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code PRG2_HUMAN
_struct_ref.pdbx_db_accession P13727
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code GNLVS
_struct_ref.pdbx_align_begin 131
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4QXX
_struct_ref_seq.pdbx_strand_id Z
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 5
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P13727
_struct_ref_seq.db_align_beg 131
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 135
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 5
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details hexameric
_pdbx_struct_assembly.oligomeric_count 6
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_655 x+1,y,z 1.0000000000 0.0000000000 0.0000000000 4.7550000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_755 x+2,y,z 1.0000000000 0.0000000000 0.0000000000 9.5100000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 3_555 -x,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 8.4080000000 0.0000000000 0.0000000000 -1.0000000000 17.8795000000
5 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 4.7550000000 0.0000000000
1.0000000000 0.0000000000 8.4080000000 0.0000000000 0.0000000000 -1.0000000000 17.8795000000
6 'crystal symmetry operation' 3_755 -x+2,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 9.5100000000 0.0000000000
1.0000000000 0.0000000000 8.4080000000 0.0000000000 0.0000000000 -1.0000000000 17.8795000000
#
_struct_biol.id 1
_struct_biol.details 'The biological assembly listed in REMARK 350 represents only a segment of a fibril.'
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id Z
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 102
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id B
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
GLY N N N N 18
GLY CA C N N 19
GLY C C N N 20
GLY O O N N 21
GLY OXT O N N 22
GLY H H N N 23
GLY H2 H N N 24
GLY HA2 H N N 25
GLY HA3 H N N 26
GLY HXT H N N 27
HOH O O N N 28
HOH H1 H N N 29
HOH H2 H N N 30
LEU N N N N 31
LEU CA C N S 32
LEU C C N N 33
LEU O O N N 34
LEU CB C N N 35
LEU CG C N N 36
LEU CD1 C N N 37
LEU CD2 C N N 38
LEU OXT O N N 39
LEU H H N N 40
LEU H2 H N N 41
LEU HA H N N 42
LEU HB2 H N N 43
LEU HB3 H N N 44
LEU HG H N N 45
LEU HD11 H N N 46
LEU HD12 H N N 47
LEU HD13 H N N 48
LEU HD21 H N N 49
LEU HD22 H N N 50
LEU HD23 H N N 51
LEU HXT H N N 52
SER N N N N 53
SER CA C N S 54
SER C C N N 55
SER O O N N 56
SER CB C N N 57
SER OG O N N 58
SER OXT O N N 59
SER H H N N 60
SER H2 H N N 61
SER HA H N N 62
SER HB2 H N N 63
SER HB3 H N N 64
SER HG H N N 65
SER HXT H N N 66
VAL N N N N 67
VAL CA C N S 68
VAL C C N N 69
VAL O O N N 70
VAL CB C N N 71
VAL CG1 C N N 72
VAL CG2 C N N 73
VAL OXT O N N 74
VAL H H N N 75
VAL H2 H N N 76
VAL HA H N N 77
VAL HB H N N 78
VAL HG11 H N N 79
VAL HG12 H N N 80
VAL HG13 H N N 81
VAL HG21 H N N 82
VAL HG22 H N N 83
VAL HG23 H N N 84
VAL HXT H N N 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
GLY N CA sing N N 17
GLY N H sing N N 18
GLY N H2 sing N N 19
GLY CA C sing N N 20
GLY CA HA2 sing N N 21
GLY CA HA3 sing N N 22
GLY C O doub N N 23
GLY C OXT sing N N 24
GLY OXT HXT sing N N 25
HOH O H1 sing N N 26
HOH O H2 sing N N 27
LEU N CA sing N N 28
LEU N H sing N N 29
LEU N H2 sing N N 30
LEU CA C sing N N 31
LEU CA CB sing N N 32
LEU CA HA sing N N 33
LEU C O doub N N 34
LEU C OXT sing N N 35
LEU CB CG sing N N 36
LEU CB HB2 sing N N 37
LEU CB HB3 sing N N 38
LEU CG CD1 sing N N 39
LEU CG CD2 sing N N 40
LEU CG HG sing N N 41
LEU CD1 HD11 sing N N 42
LEU CD1 HD12 sing N N 43
LEU CD1 HD13 sing N N 44
LEU CD2 HD21 sing N N 45
LEU CD2 HD22 sing N N 46
LEU CD2 HD23 sing N N 47
LEU OXT HXT sing N N 48
SER N CA sing N N 49
SER N H sing N N 50
SER N H2 sing N N 51
SER CA C sing N N 52
SER CA CB sing N N 53
SER CA HA sing N N 54
SER C O doub N N 55
SER C OXT sing N N 56
SER CB OG sing N N 57
SER CB HB2 sing N N 58
SER CB HB3 sing N N 59
SER OG HG sing N N 60
SER OXT HXT sing N N 61
VAL N CA sing N N 62
VAL N H sing N N 63
VAL N H2 sing N N 64
VAL CA C sing N N 65
VAL CA CB sing N N 66
VAL CA HA sing N N 67
VAL C O doub N N 68
VAL C OXT sing N N 69
VAL CB CG1 sing N N 70
VAL CB CG2 sing N N 71
VAL CB HB sing N N 72
VAL CG1 HG11 sing N N 73
VAL CG1 HG12 sing N N 74
VAL CG1 HG13 sing N N 75
VAL CG2 HG21 sing N N 76
VAL CG2 HG22 sing N N 77
VAL CG2 HG23 sing N N 78
VAL OXT HXT sing N N 79
#
_atom_sites.entry_id 4QXX
_atom_sites.fract_transf_matrix[1][1] 0.210305
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.059467
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.027965
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? -0.821 -2.072 16.609 1.00 9.93 ? 1 GLY Z N 1
ATOM 2 C CA . GLY A 1 1 ? -1.705 -2.345 15.487 1.00 7.38 ? 1 GLY Z CA 1
ATOM 3 C C . GLY A 1 1 ? -0.968 -3.008 14.344 1.00 4.89 ? 1 GLY Z C 1
ATOM 4 O O . GLY A 1 1 ? 0.258 -2.982 14.292 1.00 5.05 ? 1 GLY Z O 1
ATOM 5 N N . ASN A 1 2 ? -1.721 -3.603 13.425 1.00 3.53 ? 2 ASN Z N 1
ATOM 6 C CA . ASN A 1 2 ? -1.141 -4.323 12.291 1.00 1.85 ? 2 ASN Z CA 1
ATOM 7 C C . ASN A 1 2 ? -1.748 -3.900 10.968 1.00 3.00 ? 2 ASN Z C 1
ATOM 8 O O . ASN A 1 2 ? -2.955 -3.683 10.873 1.00 3.99 ? 2 ASN Z O 1
ATOM 9 C CB . ASN A 1 2 ? -1.353 -5.827 12.446 1.00 5.03 ? 2 ASN Z CB 1
ATOM 10 C CG . ASN A 1 2 ? -0.679 -6.391 13.683 1.00 5.08 ? 2 ASN Z CG 1
ATOM 11 O OD1 . ASN A 1 2 ? 0.519 -6.202 13.896 1.00 6.10 ? 2 ASN Z OD1 1
ATOM 12 N ND2 . ASN A 1 2 ? -1.448 -7.087 14.506 1.00 8.41 ? 2 ASN Z ND2 1
ATOM 13 N N . LEU A 1 3 ? -0.907 -3.803 9.944 1.00 3.47 ? 3 LEU Z N 1
ATOM 14 C CA . LEU A 1 3 ? -1.388 -3.576 8.586 1.00 3.48 ? 3 LEU Z CA 1
ATOM 15 C C . LEU A 1 3 ? -0.783 -4.660 7.709 1.00 3.29 ? 3 LEU Z C 1
ATOM 16 O O . LEU A 1 3 ? 0.437 -4.788 7.643 1.00 3.80 ? 3 LEU Z O 1
ATOM 17 C CB . LEU A 1 3 ? -0.977 -2.185 8.081 1.00 3.88 ? 3 LEU Z CB 1
ATOM 18 C CG . LEU A 1 3 ? -1.524 -1.669 6.736 1.00 8.66 ? 3 LEU Z CG 1
ATOM 19 C CD1 . LEU A 1 3 ? -1.225 -0.191 6.570 1.00 9.89 ? 3 LEU Z CD1 1
ATOM 20 C CD2 . LEU A 1 3 ? -0.962 -2.409 5.541 1.00 13.56 ? 3 LEU Z CD2 1
ATOM 21 N N . VAL A 1 4 ? -1.635 -5.424 7.029 1.00 3.17 ? 4 VAL Z N 1
ATOM 22 C CA . VAL A 1 4 ? -1.165 -6.460 6.119 1.00 3.61 ? 4 VAL Z CA 1
ATOM 23 C C . VAL A 1 4 ? -1.791 -6.230 4.755 1.00 5.31 ? 4 VAL Z C 1
ATOM 24 O O . VAL A 1 4 ? -3.014 -6.209 4.620 1.00 7.31 ? 4 VAL Z O 1
ATOM 25 C CB . VAL A 1 4 ? -1.567 -7.872 6.593 1.00 5.31 ? 4 VAL Z CB 1
ATOM 26 C CG1 . VAL A 1 4 ? -1.012 -8.934 5.633 1.00 6.73 ? 4 VAL Z CG1 1
ATOM 27 C CG2 . VAL A 1 4 ? -1.083 -8.120 8.018 1.00 5.48 ? 4 VAL Z CG2 1
ATOM 28 N N . SER A 1 5 ? -0.966 -6.052 3.736 1.00 7.53 ? 5 SER Z N 1
ATOM 29 C CA . SER A 1 5 ? -1.526 -5.888 2.407 1.00 11.48 ? 5 SER Z CA 1
ATOM 30 C C . SER A 1 5 ? -1.207 -7.085 1.529 1.00 16.35 ? 5 SER Z C 1
ATOM 31 O O . SER A 1 5 ? -0.437 -7.976 1.902 1.00 14.00 ? 5 SER Z O 1
ATOM 32 C CB . SER A 1 5 ? -1.031 -4.596 1.767 1.00 13.36 ? 5 SER Z CB 1
ATOM 33 O OG . SER A 1 5 ? 0.361 -4.652 1.540 1.00 15.80 ? 5 SER Z OG 1
ATOM 34 O OXT . SER A 1 5 ? -1.737 -7.178 0.429 1.00 17.09 ? 5 SER Z OXT 1
HETATM 35 O O . HOH B 2 . ? 0.935 -5.175 16.502 1.00 18.83 ? 101 HOH Z O 1
HETATM 36 O O A HOH B 2 . ? 0.691 -8.408 17.879 0.91 56.55 ? 102 HOH Z O 1
HETATM 37 O O B HOH B 2 . ? -0.788 -9.006 16.641 0.09 38.95 ? 102 HOH Z O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 N N . GLY A 1 ? 0.1184 0.1952 0.0638 0.0314 -0.0191 -0.0326 1 GLY Z N
2 C CA . GLY A 1 ? 0.0957 0.1374 0.0472 0.0279 -0.0124 -0.0261 1 GLY Z CA
3 C C . GLY A 1 ? 0.0899 0.0614 0.0343 0.0211 0.0112 -0.0106 1 GLY Z C
4 O O . GLY A 1 ? 0.0839 0.0595 0.0485 -0.0011 -0.0007 -0.0180 1 GLY Z O
5 N N . ASN A 2 ? 0.0747 0.0329 0.0264 -0.0226 0.0117 -0.0067 2 ASN Z N
6 C CA . ASN A 2 ? 0.0313 0.0164 0.0225 0.0076 -0.0023 0.0077 2 ASN Z CA
7 C C . ASN A 2 ? 0.0610 0.0293 0.0238 0.0197 -0.0002 -0.0042 2 ASN Z C
8 O O . ASN A 2 ? 0.0599 0.0514 0.0402 0.0199 0.0191 -0.0060 2 ASN Z O
9 C CB . ASN A 2 ? 0.1173 0.0368 0.0369 0.0170 -0.0047 0.0037 2 ASN Z CB
10 C CG . ASN A 2 ? 0.0727 0.0718 0.0484 0.0228 -0.0243 0.0090 2 ASN Z CG
11 O OD1 . ASN A 2 ? 0.0828 0.0960 0.0531 0.0477 -0.0061 0.0100 2 ASN Z OD1
12 N ND2 . ASN A 2 ? 0.1513 0.1193 0.0488 0.0040 0.0102 0.0279 2 ASN Z ND2
13 N N . LEU A 3 ? 0.0701 0.0405 0.0213 -0.0242 0.0025 -0.0026 3 LEU Z N
14 C CA . LEU A 3 ? 0.0728 0.0324 0.0271 0.0079 0.0180 -0.0005 3 LEU Z CA
15 C C . LEU A 3 ? 0.0684 0.0261 0.0306 -0.0017 0.0150 -0.0080 3 LEU Z C
16 O O . LEU A 3 ? 0.0590 0.0437 0.0415 0.0141 0.0178 -0.0122 3 LEU Z O
17 C CB . LEU A 3 ? 0.0899 0.0293 0.0282 0.0171 0.0125 0.0042 3 LEU Z CB
18 C CG . LEU A 3 ? 0.2091 0.0598 0.0600 0.0063 -0.0094 0.0066 3 LEU Z CG
19 C CD1 . LEU A 3 ? 0.2263 0.0792 0.0703 0.0132 -0.0163 0.0143 3 LEU Z CD1
20 C CD2 . LEU A 3 ? 0.3203 0.1048 0.0901 -0.0640 -0.0305 0.0094 3 LEU Z CD2
21 N N . VAL A 4 ? 0.0604 0.0266 0.0333 -0.0100 0.0104 -0.0123 4 VAL Z N
22 C CA . VAL A 4 ? 0.0607 0.0353 0.0411 0.0205 -0.0241 -0.0157 4 VAL Z CA
23 C C . VAL A 4 ? 0.0543 0.0915 0.0562 0.0395 -0.0015 -0.0039 4 VAL Z C
24 O O . VAL A 4 ? 0.0577 0.1569 0.0630 0.0045 -0.0005 -0.0227 4 VAL Z O
25 C CB . VAL A 4 ? 0.1024 0.0336 0.0657 0.0064 0.0039 -0.0167 4 VAL Z CB
26 C CG1 . VAL A 4 ? 0.1131 0.0549 0.0879 0.0220 0.0104 -0.0300 4 VAL Z CG1
27 C CG2 . VAL A 4 ? 0.0819 0.0632 0.0630 0.0015 0.0015 0.0042 4 VAL Z CG2
28 N N . SER A 5 ? 0.0810 0.1357 0.0693 0.0337 0.0048 0.0302 5 SER Z N
29 C CA . SER A 5 ? 0.1654 0.1766 0.0943 0.0560 -0.0145 0.0241 5 SER Z CA
30 C C . SER A 5 ? 0.3066 0.2118 0.1029 0.0758 -0.0523 -0.0208 5 SER Z C
31 O O . SER A 5 ? 0.2584 0.1676 0.1060 0.0878 -0.0402 -0.0452 5 SER Z O
32 C CB . SER A 5 ? 0.1565 0.2151 0.1361 0.0818 -0.0030 0.0608 5 SER Z CB
33 O OG . SER A 5 ? 0.1604 0.2812 0.1587 0.0822 0.0025 0.0763 5 SER Z OG
34 O OXT . SER A 5 ? 0.2807 0.2495 0.1192 0.0648 -0.0712 -0.0430 5 SER Z OXT
35 O O . HOH B . ? 0.3066 0.2772 0.1315 -0.1227 -0.0232 0.0339 101 HOH Z O
36 O O A HOH B . ? 0.9673 0.9234 0.2579 0.0000 0.0005 0.1219 102 HOH Z O
37 O O B HOH B . ? 0.6801 0.4266 0.3734 0.2095 -0.1531 0.0549 102 HOH Z O
#