data_4NIP
#
_entry.id 4NIP
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4NIP pdb_00004nip 10.2210/pdb4nip/pdb
RCSB RCSB083252 ? ?
WWPDB D_1000083252 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2013-12-04
2 'Structure model' 1 1 2014-01-22
3 'Structure model' 1 2 2017-11-22
4 'Structure model' 1 3 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Refinement description'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 4NIP
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2013-11-06
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1NIN 'A different amyloidogenic segment (residues 101-107) from the same protein.' unspecified
PDB 1NIO
'The same amyloidogenic segment from the same protein with a mutation related to familial form of amyotrophic lateral sclerosis'
unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sievers, S.A.' 1
'Sawaya, M.R.' 2
'Eisenberg, D.' 3
'Ivanova, M.I.' 4
#
_citation.id primary
_citation.title
'Aggregation-triggering segments of SOD1 fibril formation support a common pathway for familial and sporadic ALS.'
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_volume 111
_citation.page_first 197
_citation.page_last 201
_citation.year 2014
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 24344300
_citation.pdbx_database_id_DOI 10.1073/pnas.1320786110
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ivanova, M.I.' 1 ?
primary 'Sievers, S.A.' 2 ?
primary 'Guenther, E.L.' 3 ?
primary 'Johnson, L.M.' 4 ?
primary 'Winkler, D.D.' 5 ?
primary 'Galaleldeen, A.' 6 ?
primary 'Sawaya, M.R.' 7 ?
primary 'Hart, P.J.' 8 ?
primary 'Eisenberg, D.S.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'GVTGIAQ segment from Superoxide dismutase [Cu-Zn]' 656.772 1 ? ? 'UNP Residues 148-154' ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Superoxide dismutase 1, hSod1'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GVIGIAQ
_entity_poly.pdbx_seq_one_letter_code_can GVIGIAQ
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 VAL n
1 3 ILE n
1 4 GLY n
1 5 ILE n
1 6 ALA n
1 7 GLN n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'Homo Sapiens'
_pdbx_entity_src_syn.organism_common_name human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 ILE 3 3 3 ILE ILE A . n
A 1 4 GLY 4 4 4 GLY GLY A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 GLN 7 7 7 GLN GLN A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 2 HOH HOH A .
B 2 HOH 3 103 3 HOH HOH A .
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ?
2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
3 PHASER 1.3.2 'Wed Feb 15 11:59:26 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
#
_cell.length_a 50.128
_cell.length_b 4.843
_cell.length_c 18.142
_cell.angle_alpha 90.000
_cell.angle_beta 99.500
_cell.angle_gamma 90.000
_cell.entry_id 4NIP
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.entry_id 4NIP
_symmetry.Int_Tables_number 5
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 4NIP
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.65
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 25.61
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 4.5
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.pdbx_details
'1 M sodium acetate pH 4.5, 1.75 M ammonium sulfate, vapor diffusion, hanging drop, temperature 298K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.pdbx_collection_date 2007-07-13
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator 'cryogenically-cooled single crystal Si(111)'
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.895432
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ESRF BEAMLINE ID13'
_diffrn_source.pdbx_wavelength_list 0.895432
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site ESRF
_diffrn_source.pdbx_synchrotron_beamline ID13
#
_reflns.entry_id 4NIP
_reflns.d_resolution_high 1.900
_reflns.d_resolution_low 90.000
_reflns.number_obs 415
_reflns.pdbx_Rmerge_I_obs 0.144
_reflns.pdbx_netI_over_sigmaI 8.500
_reflns.pdbx_chi_squared 1.515
_reflns.pdbx_redundancy 2.400
_reflns.percent_possible_obs 95.200
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3.0
_reflns.number_all 415
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 20.8
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.900 2.050 ? ? ? 0.206 ? ? 1.865 2.400 ? 74 89.200 1 1
2.050 2.250 ? ? ? 0.228 ? ? 1.872 2.500 ? 90 96.800 2 1
2.250 2.580 ? ? ? 0.204 ? ? 1.056 2.400 ? 77 91.700 3 1
2.580 3.250 ? ? ? 0.196 ? ? 1.582 2.500 ? 70 97.200 4 1
3.250 90.000 ? ? ? 0.111 ? ? 1.196 2.300 ? 104 100.000 5 1
#
_refine.entry_id 4NIP
_refine.ls_d_res_high 1.9000
_refine.ls_d_res_low 24.8500
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 96.1200
_refine.ls_number_reflns_obs 378
_refine.ls_number_reflns_all 378
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2339
_refine.ls_R_factor_R_work 0.2321
_refine.ls_wR_factor_R_work 0.2410
_refine.ls_R_factor_R_free 0.2485
_refine.ls_wR_factor_R_free 0.2872
_refine.ls_percent_reflns_R_free 10.2000
_refine.ls_number_reflns_R_free 43
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 17.1302
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] 2.3500
_refine.aniso_B[2][2] -2.3300
_refine.aniso_B[3][3] -0.2700
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] -0.7400
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc 0.9310
_refine.correlation_coeff_Fo_to_Fc_free 0.9420
_refine.overall_SU_R_Cruickshank_DPI 0.2405
_refine.overall_SU_R_free 0.1787
_refine.pdbx_overall_ESU_R 0.2410
_refine.pdbx_overall_ESU_R_Free 0.1790
_refine.overall_SU_ML 0.1040
_refine.overall_SU_B 3.4360
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.4000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set 0.8529
_refine.B_iso_max 40.820
_refine.B_iso_min 2.670
_refine.pdbx_overall_phase_error ?
_refine.occupancy_max 1.000
_refine.occupancy_min 1.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 46
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 49
_refine_hist.d_res_high 1.9000
_refine_hist.d_res_low 24.8500
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 45 0.010 0.022 ? ? 'X-RAY DIFFRACTION'
r_bond_other_d 26 0.001 0.020 ? ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 60 1.316 2.008 ? ? 'X-RAY DIFFRACTION'
r_angle_other_deg 66 0.734 3.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg 6 3.286 5.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg 1 0.639 30.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg 7 11.609 15.000 ? ? 'X-RAY DIFFRACTION'
r_chiral_restr 8 0.090 0.200 ? ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 50 0.004 0.020 ? ? 'X-RAY DIFFRACTION'
r_gen_planes_other 6 0.000 0.020 ? ? 'X-RAY DIFFRACTION'
r_nbd_refined 2 0.085 0.200 ? ? 'X-RAY DIFFRACTION'
r_nbd_other 17 0.186 0.200 ? ? 'X-RAY DIFFRACTION'
r_nbtor_refined 19 0.142 0.200 ? ? 'X-RAY DIFFRACTION'
r_nbtor_other 24 0.068 0.200 ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_refined 1 0.198 0.200 ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_other 6 0.213 0.200 ? ? 'X-RAY DIFFRACTION'
r_mcbond_it 44 6.377 2.000 ? ? 'X-RAY DIFFRACTION'
r_mcbond_other 15 2.278 2.000 ? ? 'X-RAY DIFFRACTION'
r_mcangle_it 51 5.949 3.000 ? ? 'X-RAY DIFFRACTION'
r_scbond_it 13 4.287 2.000 ? ? 'X-RAY DIFFRACTION'
r_scangle_it 9 3.158 3.000 ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.d_res_high 1.9020
_refine_ls_shell.d_res_low 1.9510
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 96.5500
_refine_ls_shell.number_reflns_R_work 26
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.2640
_refine_ls_shell.R_factor_R_free 0.5090
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 2
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 28
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 4NIP
_struct.title 'GVIGIAQ segment 147-153 from Human Superoxide Dismutase'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4NIP
_struct_keywords.text 'steric zipper, cross-beta spine, amyloid fiber, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code SODC_HUMAN
_struct_ref.pdbx_db_accession P00441
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code GVIGIAQ
_struct_ref.pdbx_align_begin 148
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4NIP
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P00441
_struct_ref_seq.db_align_beg 148
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 154
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details decameric
_pdbx_struct_assembly.oligomeric_count 10
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -4.8430000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.6860000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.8430000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.6860000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 4_555 -x+1/2,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 25.0640000000 0.0000000000
1.0000000000 0.0000000000 2.4215000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
7 'crystal symmetry operation' 4_545 -x+1/2,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 25.0640000000 0.0000000000
1.0000000000 0.0000000000 -2.4215000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
8 'crystal symmetry operation' 4_535 -x+1/2,y-3/2,-z -1.0000000000 0.0000000000 0.0000000000 25.0640000000 0.0000000000
1.0000000000 0.0000000000 -7.2645000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
9 'crystal symmetry operation' 4_565 -x+1/2,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 25.0640000000 0.0000000000
1.0000000000 0.0000000000 7.2645000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
10 'crystal symmetry operation' 4_575 -x+1/2,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 25.0640000000 0.0000000000
1.0000000000 0.0000000000 12.1075000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details
;biological unit is a pair of beta-sheets. One sheet is composed of symmetry operators X,Y,Z; X,Y-1,Z; X,Y+1,Z; X,Y-2,Z; X,Y+2,Z, etc.: the opposing sheet is composed of symmetry operators 1/2-x,1/2+y,-z; 1/2-x,-1/2+y,-z; 1/2-x, 3/2+y,-z; 1/2-x,-3/2+y,-z; 1/2-x, 5/2+y,-z, etc.
;
#
_pdbx_phasing_MR.entry_id 4NIP
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 2.300
_pdbx_phasing_MR.d_res_low_rotation 24.860
_pdbx_phasing_MR.d_res_high_translation 2.300
_pdbx_phasing_MR.d_res_low_translation 24.860
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLN N N N N 14
GLN CA C N S 15
GLN C C N N 16
GLN O O N N 17
GLN CB C N N 18
GLN CG C N N 19
GLN CD C N N 20
GLN OE1 O N N 21
GLN NE2 N N N 22
GLN OXT O N N 23
GLN H H N N 24
GLN H2 H N N 25
GLN HA H N N 26
GLN HB2 H N N 27
GLN HB3 H N N 28
GLN HG2 H N N 29
GLN HG3 H N N 30
GLN HE21 H N N 31
GLN HE22 H N N 32
GLN HXT H N N 33
GLY N N N N 34
GLY CA C N N 35
GLY C C N N 36
GLY O O N N 37
GLY OXT O N N 38
GLY H H N N 39
GLY H2 H N N 40
GLY HA2 H N N 41
GLY HA3 H N N 42
GLY HXT H N N 43
HOH O O N N 44
HOH H1 H N N 45
HOH H2 H N N 46
ILE N N N N 47
ILE CA C N S 48
ILE C C N N 49
ILE O O N N 50
ILE CB C N S 51
ILE CG1 C N N 52
ILE CG2 C N N 53
ILE CD1 C N N 54
ILE OXT O N N 55
ILE H H N N 56
ILE H2 H N N 57
ILE HA H N N 58
ILE HB H N N 59
ILE HG12 H N N 60
ILE HG13 H N N 61
ILE HG21 H N N 62
ILE HG22 H N N 63
ILE HG23 H N N 64
ILE HD11 H N N 65
ILE HD12 H N N 66
ILE HD13 H N N 67
ILE HXT H N N 68
VAL N N N N 69
VAL CA C N S 70
VAL C C N N 71
VAL O O N N 72
VAL CB C N N 73
VAL CG1 C N N 74
VAL CG2 C N N 75
VAL OXT O N N 76
VAL H H N N 77
VAL H2 H N N 78
VAL HA H N N 79
VAL HB H N N 80
VAL HG11 H N N 81
VAL HG12 H N N 82
VAL HG13 H N N 83
VAL HG21 H N N 84
VAL HG22 H N N 85
VAL HG23 H N N 86
VAL HXT H N N 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLN N CA sing N N 13
GLN N H sing N N 14
GLN N H2 sing N N 15
GLN CA C sing N N 16
GLN CA CB sing N N 17
GLN CA HA sing N N 18
GLN C O doub N N 19
GLN C OXT sing N N 20
GLN CB CG sing N N 21
GLN CB HB2 sing N N 22
GLN CB HB3 sing N N 23
GLN CG CD sing N N 24
GLN CG HG2 sing N N 25
GLN CG HG3 sing N N 26
GLN CD OE1 doub N N 27
GLN CD NE2 sing N N 28
GLN NE2 HE21 sing N N 29
GLN NE2 HE22 sing N N 30
GLN OXT HXT sing N N 31
GLY N CA sing N N 32
GLY N H sing N N 33
GLY N H2 sing N N 34
GLY CA C sing N N 35
GLY CA HA2 sing N N 36
GLY CA HA3 sing N N 37
GLY C O doub N N 38
GLY C OXT sing N N 39
GLY OXT HXT sing N N 40
HOH O H1 sing N N 41
HOH O H2 sing N N 42
ILE N CA sing N N 43
ILE N H sing N N 44
ILE N H2 sing N N 45
ILE CA C sing N N 46
ILE CA CB sing N N 47
ILE CA HA sing N N 48
ILE C O doub N N 49
ILE C OXT sing N N 50
ILE CB CG1 sing N N 51
ILE CB CG2 sing N N 52
ILE CB HB sing N N 53
ILE CG1 CD1 sing N N 54
ILE CG1 HG12 sing N N 55
ILE CG1 HG13 sing N N 56
ILE CG2 HG21 sing N N 57
ILE CG2 HG22 sing N N 58
ILE CG2 HG23 sing N N 59
ILE CD1 HD11 sing N N 60
ILE CD1 HD12 sing N N 61
ILE CD1 HD13 sing N N 62
ILE OXT HXT sing N N 63
VAL N CA sing N N 64
VAL N H sing N N 65
VAL N H2 sing N N 66
VAL CA C sing N N 67
VAL CA CB sing N N 68
VAL CA HA sing N N 69
VAL C O doub N N 70
VAL C OXT sing N N 71
VAL CB CG1 sing N N 72
VAL CB CG2 sing N N 73
VAL CB HB sing N N 74
VAL CG1 HG11 sing N N 75
VAL CG1 HG12 sing N N 76
VAL CG1 HG13 sing N N 77
VAL CG2 HG21 sing N N 78
VAL CG2 HG22 sing N N 79
VAL CG2 HG23 sing N N 80
VAL OXT HXT sing N N 81
#
_atom_sites.entry_id 4NIP
_atom_sites.fract_transf_matrix[1][1] 0.019949
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.003338
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.206484
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.055887
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? 1.168 1.048 6.389 1.00 21.86 ? 1 GLY A N 1
ATOM 2 C CA . GLY A 1 1 ? 2.290 0.073 6.443 1.00 17.75 ? 1 GLY A CA 1
ATOM 3 C C . GLY A 1 1 ? 3.614 0.763 6.711 1.00 9.91 ? 1 GLY A C 1
ATOM 4 O O . GLY A 1 1 ? 3.654 1.991 6.823 1.00 18.03 ? 1 GLY A O 1
ATOM 5 N N . VAL A 1 2 ? 4.682 -0.035 6.765 1.00 13.05 ? 2 VAL A N 1
ATOM 6 C CA . VAL A 1 2 ? 6.056 0.421 7.044 1.00 8.35 ? 2 VAL A CA 1
ATOM 7 C C . VAL A 1 2 ? 7.129 -0.176 6.098 1.00 14.86 ? 2 VAL A C 1
ATOM 8 O O . VAL A 1 2 ? 7.225 -1.398 5.915 1.00 7.62 ? 2 VAL A O 1
ATOM 9 C CB . VAL A 1 2 ? 6.451 0.108 8.505 1.00 9.82 ? 2 VAL A CB 1
ATOM 10 C CG1 . VAL A 1 2 ? 7.862 0.659 8.813 1.00 9.29 ? 2 VAL A CG1 1
ATOM 11 C CG2 . VAL A 1 2 ? 5.443 0.690 9.492 1.00 13.18 ? 2 VAL A CG2 1
ATOM 12 N N . ILE A 1 3 ? 7.936 0.710 5.505 1.00 14.81 ? 3 ILE A N 1
ATOM 13 C CA . ILE A 1 3 ? 9.096 0.339 4.685 1.00 8.26 ? 3 ILE A CA 1
ATOM 14 C C . ILE A 1 3 ? 10.300 1.028 5.312 1.00 7.02 ? 3 ILE A C 1
ATOM 15 O O . ILE A 1 3 ? 10.257 2.236 5.544 1.00 7.63 ? 3 ILE A O 1
ATOM 16 C CB . ILE A 1 3 ? 8.942 0.803 3.212 1.00 10.68 ? 3 ILE A CB 1
ATOM 17 C CG1 . ILE A 1 3 ? 7.671 0.217 2.580 1.00 6.87 ? 3 ILE A CG1 1
ATOM 18 C CG2 . ILE A 1 3 ? 10.137 0.388 2.378 1.00 3.50 ? 3 ILE A CG2 1
ATOM 19 C CD1 . ILE A 1 3 ? 7.407 0.718 1.161 1.00 11.27 ? 3 ILE A CD1 1
ATOM 20 N N . GLY A 1 4 ? 11.327 0.243 5.632 1.00 7.85 ? 4 GLY A N 1
ATOM 21 C CA . GLY A 1 4 ? 12.579 0.761 6.199 1.00 13.63 ? 4 GLY A CA 1
ATOM 22 C C . GLY A 1 4 ? 13.765 0.103 5.523 1.00 2.67 ? 4 GLY A C 1
ATOM 23 O O . GLY A 1 4 ? 13.794 -1.122 5.389 1.00 9.43 ? 4 GLY A O 1
ATOM 24 N N . ILE A 1 5 ? 14.761 0.901 5.119 1.00 14.37 ? 5 ILE A N 1
ATOM 25 C CA . ILE A 1 5 ? 15.934 0.420 4.378 1.00 7.08 ? 5 ILE A CA 1
ATOM 26 C C . ILE A 1 5 ? 17.247 0.993 4.949 1.00 5.80 ? 5 ILE A C 1
ATOM 27 O O . ILE A 1 5 ? 17.417 2.212 4.964 1.00 9.24 ? 5 ILE A O 1
ATOM 28 C CB . ILE A 1 5 ? 15.852 0.839 2.885 1.00 10.98 ? 5 ILE A CB 1
ATOM 29 C CG1 . ILE A 1 5 ? 14.632 0.205 2.197 1.00 4.63 ? 5 ILE A CG1 1
ATOM 30 C CG2 . ILE A 1 5 ? 17.106 0.414 2.143 1.00 6.84 ? 5 ILE A CG2 1
ATOM 31 C CD1 . ILE A 1 5 ? 14.402 0.707 0.778 1.00 11.07 ? 5 ILE A CD1 1
ATOM 32 N N . ALA A 1 6 ? 18.142 0.117 5.426 1.00 8.87 ? 6 ALA A N 1
ATOM 33 C CA . ALA A 1 6 ? 19.455 0.517 5.982 1.00 15.58 ? 6 ALA A CA 1
ATOM 34 C C . ALA A 1 6 ? 20.621 0.063 5.102 1.00 20.91 ? 6 ALA A C 1
ATOM 35 O O . ALA A 1 6 ? 20.786 -1.127 4.854 1.00 26.18 ? 6 ALA A O 1
ATOM 36 C CB . ALA A 1 6 ? 19.643 -0.045 7.391 1.00 15.37 ? 6 ALA A CB 1
ATOM 37 N N . GLN A 1 7 ? 21.433 1.018 4.647 1.00 22.23 ? 7 GLN A N 1
ATOM 38 C CA . GLN A 1 7 ? 22.600 0.746 3.811 1.00 32.18 ? 7 GLN A CA 1
ATOM 39 C C . GLN A 1 7 ? 23.852 1.332 4.472 1.00 31.59 ? 7 GLN A C 1
ATOM 40 O O . GLN A 1 7 ? 24.965 1.283 3.939 1.00 37.97 ? 7 GLN A O 1
ATOM 41 C CB . GLN A 1 7 ? 22.407 1.351 2.411 1.00 35.92 ? 7 GLN A CB 1
ATOM 42 C CG . GLN A 1 7 ? 21.637 0.465 1.431 1.00 40.08 ? 7 GLN A CG 1
ATOM 43 C CD . GLN A 1 7 ? 21.152 1.202 0.176 1.00 40.07 ? 7 GLN A CD 1
ATOM 44 O OE1 . GLN A 1 7 ? 21.367 2.405 0.008 1.00 39.12 ? 7 GLN A OE1 1
ATOM 45 N NE2 . GLN A 1 7 ? 20.490 0.468 -0.711 1.00 35.16 ? 7 GLN A NE2 1
ATOM 46 O OXT . GLN A 1 7 ? 23.781 1.882 5.568 1.00 32.09 ? 7 GLN A OXT 1
HETATM 47 O O . HOH B 2 . ? 11.496 0.410 9.475 1.00 19.25 ? 101 HOH A O 1
HETATM 48 O O . HOH B 2 . ? 20.206 -0.213 -3.694 1.00 28.64 ? 102 HOH A O 1
HETATM 49 O O . HOH B 2 . ? 22.228 -1.696 -3.280 1.00 40.82 ? 103 HOH A O 1
#