data_4NIO
#
_entry.id 4NIO
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4NIO pdb_00004nio 10.2210/pdb4nio/pdb
RCSB RCSB083251 ? ?
WWPDB D_1000083251 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2013-12-04
2 'Structure model' 1 1 2014-01-22
3 'Structure model' 1 2 2017-11-22
4 'Structure model' 1 3 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Refinement description'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
5 4 'Structure model' struct_ref_seq_dif
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_ref_seq_dif.details'
#
_pdbx_database_status.entry_id 4NIO
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2013-11-06
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 4NIN 'A different segment (residues 101-107) from the same protein, human SOD.' unspecified
PDB 4NIP . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sievers, S.A.' 1
'Sawaya, M.R.' 2
'Eisenberg, D.' 3
'Ivanova, M.I.' 4
#
_citation.id primary
_citation.title
'Aggregation-triggering segments of SOD1 fibril formation support a common pathway for familial and sporadic ALS.'
_citation.journal_abbrev Proc.Natl.Acad.Sci.USA
_citation.journal_volume 111
_citation.page_first 197
_citation.page_last 201
_citation.year 2014
_citation.journal_id_ASTM PNASA6
_citation.country US
_citation.journal_id_ISSN 0027-8424
_citation.journal_id_CSD 0040
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 24344300
_citation.pdbx_database_id_DOI 10.1073/pnas.1320786110
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ivanova, M.I.' 1 ?
primary 'Sievers, S.A.' 2 ?
primary 'Guenther, E.L.' 3 ?
primary 'Johnson, L.M.' 4 ?
primary 'Winkler, D.D.' 5 ?
primary 'Galaleldeen, A.' 6 ?
primary 'Sawaya, M.R.' 7 ?
primary 'Hart, P.J.' 8 ?
primary 'Eisenberg, D.S.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'GVTGIAQ segment from Superoxide dismutase [Cu-Zn]' 644.718 1 ? I149T 'UNP Residues 148-154' ?
2 water nat water 18.015 4 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Superoxide dismutase 1, hSod1'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GVTGIAQ
_entity_poly.pdbx_seq_one_letter_code_can GVTGIAQ
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 VAL n
1 3 THR n
1 4 GLY n
1 5 ILE n
1 6 ALA n
1 7 GLN n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'Homo Sapiens'
_pdbx_entity_src_syn.organism_common_name human
_pdbx_entity_src_syn.ncbi_taxonomy_id 9606
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 1 1 GLY GLY A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 THR 3 3 3 THR THR A . n
A 1 4 GLY 4 4 4 GLY GLY A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 GLN 7 7 7 GLN GLN A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 1 HOH HOH A .
B 2 HOH 2 102 2 HOH HOH A .
B 2 HOH 3 103 3 HOH HOH A .
B 2 HOH 4 104 4 HOH HOH A .
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ?
2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
3 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
#
_cell.length_a 47.787
_cell.length_b 4.787
_cell.length_c 17.687
_cell.angle_alpha 90.000
_cell.angle_beta 109.390
_cell.angle_gamma 90.000
_cell.entry_id 4NIO
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.entry_id 4NIO
_symmetry.Int_Tables_number 5
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 4NIO
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.48
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 16.89
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 4.5
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.pdbx_details
'0.1 M sodium acetate pH 4.5, 0.7 M hexanediol, vapor diffusion, hanging drop, temperature 298K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2011-03-03
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator 'cryogenically-cooled single crystal Si(220)'
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.pdbx_wavelength_list 0.9792
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
#
_reflns.entry_id 4NIO
_reflns.d_resolution_high 1.300
_reflns.d_resolution_low 100.000
_reflns.number_obs 1053
_reflns.pdbx_Rmerge_I_obs 0.128
_reflns.pdbx_netI_over_sigmaI 11.000
_reflns.pdbx_chi_squared 1.042
_reflns.pdbx_redundancy 4.300
_reflns.percent_possible_obs 95.700
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3.0
_reflns.number_all 1053
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 14.7
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.300 1.350 ? ? ? 0.269 ? ? 1.014 2.400 ? 84 81.600 1 1
1.350 1.400 ? ? ? 0.311 ? ? 1.058 2.700 ? 95 92.200 2 1
1.400 1.460 ? ? ? 0.285 ? ? 1.012 3.200 ? 100 96.200 3 1
1.460 1.540 ? ? ? 0.353 ? ? 1.064 3.700 ? 111 94.100 4 1
1.540 1.640 ? ? ? 0.262 ? ? 1.099 4.300 ? 107 95.500 5 1
1.640 1.760 ? ? ? 0.211 ? ? 1.029 5.200 ? 91 100.000 6 1
1.760 1.940 ? ? ? 0.176 ? ? 1.019 5.400 ? 102 99.000 7 1
1.940 2.220 ? ? ? 0.145 ? ? 1.034 5.400 ? 128 100.000 8 1
2.220 2.800 ? ? ? 0.129 ? ? 1.064 5.100 ? 102 99.000 9 1
2.800 100.000 ? ? ? 0.093 ? ? 1.023 5.000 ? 133 98.500 10 1
#
_refine.entry_id 4NIO
_refine.ls_d_res_high 1.3000
_refine.ls_d_res_low 22.5400
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 95.9000
_refine.ls_number_reflns_obs 1053
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY'
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2051
_refine.ls_R_factor_R_work 0.2018
_refine.ls_wR_factor_R_work 0.2221
_refine.ls_R_factor_R_free 0.2332
_refine.ls_wR_factor_R_free 0.2247
_refine.ls_percent_reflns_R_free 11.0000
_refine.ls_number_reflns_R_free 116
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 9.1706
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] -0.0900
_refine.aniso_B[2][2] -0.2400
_refine.aniso_B[3][3] 0.6400
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.4600
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc 0.9590
_refine.correlation_coeff_Fo_to_Fc_free 0.9480
_refine.overall_SU_R_Cruickshank_DPI 0.0712
_refine.overall_SU_R_free 0.0731
_refine.pdbx_overall_ESU_R 0.0710
_refine.pdbx_overall_ESU_R_Free 0.0730
_refine.overall_SU_ML 0.0520
_refine.overall_SU_B 1.3900
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.4000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set 0.7612
_refine.B_iso_max 31.560
_refine.B_iso_min 5.330
_refine.pdbx_overall_phase_error ?
_refine.occupancy_max 1.000
_refine.occupancy_min 1.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 45
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 4
_refine_hist.number_atoms_total 49
_refine_hist.d_res_high 1.3000
_refine_hist.d_res_low 22.5400
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 44 0.004 0.022 ? ? 'X-RAY DIFFRACTION'
r_bond_other_d 24 0.001 0.020 ? ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 59 1.064 1.986 ? ? 'X-RAY DIFFRACTION'
r_angle_other_deg 61 0.611 3.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg 6 5.920 5.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg 1 45.167 30.000 ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg 6 3.500 15.000 ? ? 'X-RAY DIFFRACTION'
r_chiral_restr 8 0.063 0.200 ? ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 50 0.002 0.020 ? ? 'X-RAY DIFFRACTION'
r_gen_planes_other 6 0.000 0.020 ? ? 'X-RAY DIFFRACTION'
r_mcbond_it 33 0.534 1.500 ? ? 'X-RAY DIFFRACTION'
r_mcbond_other 15 0.071 1.500 ? ? 'X-RAY DIFFRACTION'
r_mcangle_it 51 0.894 2.000 ? ? 'X-RAY DIFFRACTION'
r_scbond_it 11 0.640 3.000 ? ? 'X-RAY DIFFRACTION'
r_scangle_it 8 1.261 4.500 ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.d_res_high 1.3010
_refine_ls_shell.d_res_low 1.3350
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 81.6900
_refine_ls_shell.number_reflns_R_work 51
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.2360
_refine_ls_shell.R_factor_R_free 0.5390
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 7
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 58
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 4NIO
_struct.title
;GVTGIAQ segment 147-153 from Human Superoxide Dismutase with I149T mutation associated with a familial form of amyotrophic lateral sclerosis
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4NIO
_struct_keywords.text 'steric zipper, cross-beta spine, amyloid fiber, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code SODC_HUMAN
_struct_ref.pdbx_db_accession P00441
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code GVIGIAQ
_struct_ref.pdbx_align_begin 148
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4NIO
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P00441
_struct_ref_seq.db_align_beg 148
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 154
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
_struct_ref_seq_dif.align_id 1
_struct_ref_seq_dif.pdbx_pdb_id_code 4NIO
_struct_ref_seq_dif.mon_id THR
_struct_ref_seq_dif.pdbx_pdb_strand_id A
_struct_ref_seq_dif.seq_num 3
_struct_ref_seq_dif.pdbx_pdb_ins_code ?
_struct_ref_seq_dif.pdbx_seq_db_name UNP
_struct_ref_seq_dif.pdbx_seq_db_accession_code P00441
_struct_ref_seq_dif.db_mon_id ILE
_struct_ref_seq_dif.pdbx_seq_db_seq_num 150
_struct_ref_seq_dif.details 'engineered mutation'
_struct_ref_seq_dif.pdbx_auth_seq_num 3
_struct_ref_seq_dif.pdbx_ordinal 1
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details decameric
_pdbx_struct_assembly.oligomeric_count 10
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -4.7870000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.5740000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.7870000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.5740000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 4_555 -x+1/2,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 23.8935000000 0.0000000000
1.0000000000 0.0000000000 2.3935000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
7 'crystal symmetry operation' 4_545 -x+1/2,y-1/2,-z -1.0000000000 0.0000000000 0.0000000000 23.8935000000 0.0000000000
1.0000000000 0.0000000000 -2.3935000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
8 'crystal symmetry operation' 4_535 -x+1/2,y-3/2,-z -1.0000000000 0.0000000000 0.0000000000 23.8935000000 0.0000000000
1.0000000000 0.0000000000 -7.1805000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
9 'crystal symmetry operation' 4_565 -x+1/2,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 23.8935000000 0.0000000000
1.0000000000 0.0000000000 7.1805000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
10 'crystal symmetry operation' 4_575 -x+1/2,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 23.8935000000 0.0000000000
1.0000000000 0.0000000000 11.9675000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details
;biological unit is a pair of beta-sheets. One sheet is composed of symmetry operators X,Y,Z; X,Y-1,Z; X,Y+1,Z; X,Y-2,Z; X,Y+2,Z, etc.: the opposing sheet is composed of symmetry operators 1/2-x,1/2+y,-z; 1/2-x,-1/2+y,-z; 1/2-x, 3/2+y,-z; 1/2-x,-3/2+y,-z; 1/2-x, 5/2+y,-z, etc.
;
#
_pdbx_phasing_MR.entry_id 4NIO
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 1.600
_pdbx_phasing_MR.d_res_low_rotation 16.680
_pdbx_phasing_MR.d_res_high_translation 1.600
_pdbx_phasing_MR.d_res_low_translation 16.680
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
GLN N N N N 14
GLN CA C N S 15
GLN C C N N 16
GLN O O N N 17
GLN CB C N N 18
GLN CG C N N 19
GLN CD C N N 20
GLN OE1 O N N 21
GLN NE2 N N N 22
GLN OXT O N N 23
GLN H H N N 24
GLN H2 H N N 25
GLN HA H N N 26
GLN HB2 H N N 27
GLN HB3 H N N 28
GLN HG2 H N N 29
GLN HG3 H N N 30
GLN HE21 H N N 31
GLN HE22 H N N 32
GLN HXT H N N 33
GLY N N N N 34
GLY CA C N N 35
GLY C C N N 36
GLY O O N N 37
GLY OXT O N N 38
GLY H H N N 39
GLY H2 H N N 40
GLY HA2 H N N 41
GLY HA3 H N N 42
GLY HXT H N N 43
HOH O O N N 44
HOH H1 H N N 45
HOH H2 H N N 46
ILE N N N N 47
ILE CA C N S 48
ILE C C N N 49
ILE O O N N 50
ILE CB C N S 51
ILE CG1 C N N 52
ILE CG2 C N N 53
ILE CD1 C N N 54
ILE OXT O N N 55
ILE H H N N 56
ILE H2 H N N 57
ILE HA H N N 58
ILE HB H N N 59
ILE HG12 H N N 60
ILE HG13 H N N 61
ILE HG21 H N N 62
ILE HG22 H N N 63
ILE HG23 H N N 64
ILE HD11 H N N 65
ILE HD12 H N N 66
ILE HD13 H N N 67
ILE HXT H N N 68
THR N N N N 69
THR CA C N S 70
THR C C N N 71
THR O O N N 72
THR CB C N R 73
THR OG1 O N N 74
THR CG2 C N N 75
THR OXT O N N 76
THR H H N N 77
THR H2 H N N 78
THR HA H N N 79
THR HB H N N 80
THR HG1 H N N 81
THR HG21 H N N 82
THR HG22 H N N 83
THR HG23 H N N 84
THR HXT H N N 85
VAL N N N N 86
VAL CA C N S 87
VAL C C N N 88
VAL O O N N 89
VAL CB C N N 90
VAL CG1 C N N 91
VAL CG2 C N N 92
VAL OXT O N N 93
VAL H H N N 94
VAL H2 H N N 95
VAL HA H N N 96
VAL HB H N N 97
VAL HG11 H N N 98
VAL HG12 H N N 99
VAL HG13 H N N 100
VAL HG21 H N N 101
VAL HG22 H N N 102
VAL HG23 H N N 103
VAL HXT H N N 104
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
GLN N CA sing N N 13
GLN N H sing N N 14
GLN N H2 sing N N 15
GLN CA C sing N N 16
GLN CA CB sing N N 17
GLN CA HA sing N N 18
GLN C O doub N N 19
GLN C OXT sing N N 20
GLN CB CG sing N N 21
GLN CB HB2 sing N N 22
GLN CB HB3 sing N N 23
GLN CG CD sing N N 24
GLN CG HG2 sing N N 25
GLN CG HG3 sing N N 26
GLN CD OE1 doub N N 27
GLN CD NE2 sing N N 28
GLN NE2 HE21 sing N N 29
GLN NE2 HE22 sing N N 30
GLN OXT HXT sing N N 31
GLY N CA sing N N 32
GLY N H sing N N 33
GLY N H2 sing N N 34
GLY CA C sing N N 35
GLY CA HA2 sing N N 36
GLY CA HA3 sing N N 37
GLY C O doub N N 38
GLY C OXT sing N N 39
GLY OXT HXT sing N N 40
HOH O H1 sing N N 41
HOH O H2 sing N N 42
ILE N CA sing N N 43
ILE N H sing N N 44
ILE N H2 sing N N 45
ILE CA C sing N N 46
ILE CA CB sing N N 47
ILE CA HA sing N N 48
ILE C O doub N N 49
ILE C OXT sing N N 50
ILE CB CG1 sing N N 51
ILE CB CG2 sing N N 52
ILE CB HB sing N N 53
ILE CG1 CD1 sing N N 54
ILE CG1 HG12 sing N N 55
ILE CG1 HG13 sing N N 56
ILE CG2 HG21 sing N N 57
ILE CG2 HG22 sing N N 58
ILE CG2 HG23 sing N N 59
ILE CD1 HD11 sing N N 60
ILE CD1 HD12 sing N N 61
ILE CD1 HD13 sing N N 62
ILE OXT HXT sing N N 63
THR N CA sing N N 64
THR N H sing N N 65
THR N H2 sing N N 66
THR CA C sing N N 67
THR CA CB sing N N 68
THR CA HA sing N N 69
THR C O doub N N 70
THR C OXT sing N N 71
THR CB OG1 sing N N 72
THR CB CG2 sing N N 73
THR CB HB sing N N 74
THR OG1 HG1 sing N N 75
THR CG2 HG21 sing N N 76
THR CG2 HG22 sing N N 77
THR CG2 HG23 sing N N 78
THR OXT HXT sing N N 79
VAL N CA sing N N 80
VAL N H sing N N 81
VAL N H2 sing N N 82
VAL CA C sing N N 83
VAL CA CB sing N N 84
VAL CA HA sing N N 85
VAL C O doub N N 86
VAL C OXT sing N N 87
VAL CB CG1 sing N N 88
VAL CB CG2 sing N N 89
VAL CB HB sing N N 90
VAL CG1 HG11 sing N N 91
VAL CG1 HG12 sing N N 92
VAL CG1 HG13 sing N N 93
VAL CG2 HG21 sing N N 94
VAL CG2 HG22 sing N N 95
VAL CG2 HG23 sing N N 96
VAL OXT HXT sing N N 97
#
_atom_sites.entry_id 4NIO
_atom_sites.fract_transf_matrix[1][1] 0.020926
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.007366
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.208899
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.059939
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . GLY A 1 1 ? -0.048 1.354 6.437 1.00 7.31 ? 1 GLY A N 1
ATOM 2 C CA . GLY A 1 1 ? 1.013 0.382 6.828 1.00 6.60 ? 1 GLY A CA 1
ATOM 3 C C . GLY A 1 1 ? 2.360 1.060 6.991 1.00 6.39 ? 1 GLY A C 1
ATOM 4 O O . GLY A 1 1 ? 2.458 2.285 6.909 1.00 6.51 ? 1 GLY A O 1
ATOM 5 N N . VAL A 1 2 ? 3.394 0.255 7.234 1.00 6.00 ? 2 VAL A N 1
ATOM 6 C CA . VAL A 1 2 ? 4.760 0.745 7.386 1.00 6.00 ? 2 VAL A CA 1
ATOM 7 C C . VAL A 1 2 ? 5.621 0.126 6.298 1.00 6.05 ? 2 VAL A C 1
ATOM 8 O O . VAL A 1 2 ? 5.647 -1.091 6.149 1.00 6.45 ? 2 VAL A O 1
ATOM 9 C CB . VAL A 1 2 ? 5.339 0.387 8.769 1.00 5.98 ? 2 VAL A CB 1
ATOM 10 C CG1 . VAL A 1 2 ? 6.790 0.841 8.880 1.00 6.21 ? 2 VAL A CG1 1
ATOM 11 C CG2 . VAL A 1 2 ? 4.492 1.011 9.871 1.00 6.01 ? 2 VAL A CG2 1
ATOM 12 N N . THR A 1 3 ? 6.311 0.967 5.533 1.00 6.09 ? 3 THR A N 1
ATOM 13 C CA . THR A 1 3 ? 7.126 0.507 4.415 1.00 6.14 ? 3 THR A CA 1
ATOM 14 C C . THR A 1 3 ? 8.478 1.185 4.483 1.00 5.82 ? 3 THR A C 1
ATOM 15 O O . THR A 1 3 ? 8.548 2.409 4.555 1.00 6.12 ? 3 THR A O 1
ATOM 16 C CB . THR A 1 3 ? 6.467 0.847 3.067 1.00 6.29 ? 3 THR A CB 1
ATOM 17 O OG1 . THR A 1 3 ? 5.121 0.361 3.053 1.00 7.13 ? 3 THR A OG1 1
ATOM 18 C CG2 . THR A 1 3 ? 7.245 0.226 1.913 1.00 6.31 ? 3 THR A CG2 1
ATOM 19 N N . GLY A 1 4 ? 9.553 0.405 4.452 1.00 5.67 ? 4 GLY A N 1
ATOM 20 C CA . GLY A 1 4 ? 10.879 0.984 4.574 1.00 5.68 ? 4 GLY A CA 1
ATOM 21 C C . GLY A 1 4 ? 11.996 0.261 3.857 1.00 5.62 ? 4 GLY A C 1
ATOM 22 O O . GLY A 1 4 ? 11.978 -0.958 3.718 1.00 5.33 ? 4 GLY A O 1
ATOM 23 N N . ILE A 1 5 ? 12.971 1.041 3.398 1.00 5.78 ? 5 ILE A N 1
ATOM 24 C CA . ILE A 1 5 ? 14.254 0.521 2.943 1.00 6.07 ? 5 ILE A CA 1
ATOM 25 C C . ILE A 1 5 ? 15.335 1.158 3.815 1.00 6.46 ? 5 ILE A C 1
ATOM 26 O O . ILE A 1 5 ? 15.420 2.384 3.912 1.00 6.03 ? 5 ILE A O 1
ATOM 27 C CB . ILE A 1 5 ? 14.531 0.847 1.460 1.00 6.09 ? 5 ILE A CB 1
ATOM 28 C CG1 . ILE A 1 5 ? 13.425 0.276 0.572 1.00 6.40 ? 5 ILE A CG1 1
ATOM 29 C CG2 . ILE A 1 5 ? 15.888 0.285 1.035 1.00 5.96 ? 5 ILE A CG2 1
ATOM 30 C CD1 . ILE A 1 5 ? 13.605 0.568 -0.913 1.00 6.47 ? 5 ILE A CD1 1
ATOM 31 N N . ALA A 1 6 ? 16.136 0.316 4.461 1.00 7.05 ? 6 ALA A N 1
ATOM 32 C CA . ALA A 1 6 ? 17.240 0.770 5.294 1.00 8.07 ? 6 ALA A CA 1
ATOM 33 C C . ALA A 1 6 ? 18.544 0.243 4.713 1.00 9.05 ? 6 ALA A C 1
ATOM 34 O O . ALA A 1 6 ? 18.709 -0.966 4.557 1.00 9.53 ? 6 ALA A O 1
ATOM 35 C CB . ALA A 1 6 ? 17.056 0.277 6.716 1.00 7.94 ? 6 ALA A CB 1
ATOM 36 N N . GLN A 1 7 ? 19.457 1.157 4.384 1.00 10.42 ? 7 GLN A N 1
ATOM 37 C CA . GLN A 1 7 ? 20.748 0.810 3.788 1.00 11.49 ? 7 GLN A CA 1
ATOM 38 C C . GLN A 1 7 ? 21.888 1.404 4.599 1.00 12.21 ? 7 GLN A C 1
ATOM 39 O O . GLN A 1 7 ? 22.989 0.851 4.624 1.00 13.18 ? 7 GLN A O 1
ATOM 40 C CB . GLN A 1 7 ? 20.826 1.330 2.355 1.00 11.50 ? 7 GLN A CB 1
ATOM 41 C CG . GLN A 1 7 ? 19.796 0.714 1.438 1.00 12.17 ? 7 GLN A CG 1
ATOM 42 C CD . GLN A 1 7 ? 19.797 1.317 0.050 1.00 13.21 ? 7 GLN A CD 1
ATOM 43 O OE1 . GLN A 1 7 ? 19.834 2.537 -0.116 1.00 14.51 ? 7 GLN A OE1 1
ATOM 44 N NE2 . GLN A 1 7 ? 19.740 0.460 -0.960 1.00 13.85 ? 7 GLN A NE2 1
ATOM 45 O OXT . GLN A 1 7 ? 21.738 2.451 5.232 1.00 13.04 ? 7 GLN A OXT 1
HETATM 46 O O . HOH B 2 . ? 3.686 2.543 3.929 1.00 13.42 ? 101 HOH A O 1
HETATM 47 O O . HOH B 2 . ? 24.991 4.112 3.939 1.00 31.56 ? 102 HOH A O 1
HETATM 48 O O . HOH B 2 . ? 24.426 3.148 1.611 1.00 22.81 ? 103 HOH A O 1
HETATM 49 O O . HOH B 2 . ? 19.747 2.651 7.306 1.00 29.38 ? 104 HOH A O 1
#