HEADER ANTIMICROBIAL PROTEIN 28-AUG-13 4MGP
TITLE STRUCTURE OF RACEMIC ALA-(8,13,18) MAGAININ 2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MAGAININ 2 DERIVATIVE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 83-105;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 SYNTHETIC: YES;
SOURCE 3 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS;
SOURCE 4 ORGANISM_COMMON: CLAWED FROG,COMMON PLATANNA,PLATANNA;
SOURCE 5 ORGANISM_TAXID: 8355
KEYWDS PHENYLALANINE ZIPPER, ANTIMICROBIAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Z.HAYOUKA,D.E.MORTENSON,D.F.KREITLER,B.WEISBLUM,S.H.GELLMAN,
AUTHOR 2 K.T.FOREST
REVDAT 4 20-SEP-23 4MGP 1 REMARK
REVDAT 3 06-NOV-13 4MGP 1 JRNL
REVDAT 2 23-OCT-13 4MGP 1 JRNL
REVDAT 1 16-OCT-13 4MGP 0
JRNL AUTH Z.HAYOUKA,D.E.MORTENSON,D.F.KREITLER,B.WEISBLUM,K.T.FOREST,
JRNL AUTH 2 S.H.GELLMAN
JRNL TITL EVIDENCE FOR PHENYLALANINE ZIPPER-MEDIATED DIMERIZATION IN
JRNL TITL 2 THE X-RAY CRYSTAL STRUCTURE OF A MAGAININ 2 ANALOGUE.
JRNL REF J.AM.CHEM.SOC. V. 135 15738 2013
JRNL REFN ISSN 0002-7863
JRNL PMID 24102563
JRNL DOI 10.1021/JA409082W
REMARK 2
REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.69
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4
REMARK 3 NUMBER OF REFLECTIONS : 2169
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.198
REMARK 3 R VALUE (WORKING SET) : 0.197
REMARK 3 FREE R VALUE : 0.233
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400
REMARK 3 FREE R VALUE TEST SET COUNT : 95
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 10
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84
REMARK 3 REFLECTION IN BIN (WORKING SET) : 228
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.37
REMARK 3 BIN R VALUE (WORKING SET) : 0.3380
REMARK 3 BIN FREE R VALUE SET COUNT : 9
REMARK 3 BIN FREE R VALUE : 0.3650
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 163
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 0
REMARK 3 SOLVENT ATOMS : 5
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 26.40
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.59
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.63000
REMARK 3 B22 (A**2) : -0.63000
REMARK 3 B33 (A**2) : 1.27000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.125
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.415
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 172 ; 0.023 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 176 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 230 ; 2.430 ; 1.915
REMARK 3 BOND ANGLES OTHERS (DEGREES): 400 ; 1.189 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 23 ; 5.806 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ;38.848 ;23.333
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 30 ;16.790 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 25 ; 0.165 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 195 ; 0.012 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 43 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 4MGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-13.
REMARK 100 THE DEPOSITION ID IS D_1000081888.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-JUN-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-G
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786
REMARK 200 MONOCHROMATOR : C(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XPREP 2008/2 FOR WINDOWS, DENZO
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2247
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750
REMARK 200 RESOLUTION RANGE LOW (A) : 26.720
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4
REMARK 200 DATA REDUNDANCY : 22.40
REMARK 200 R MERGE (I) : 0.09200
REMARK 200 R SYM (I) : NULL
REMARK 200 FOR THE DATA SET : 32.1700
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79
REMARK 200 COMPLETENESS FOR SHELL (%) : 64.3
REMARK 200 DATA REDUNDANCY IN SHELL : 4.80
REMARK 200 R MERGE FOR SHELL (I) : 0.37400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 FOR SHELL : 3.900
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 2MAG
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.42
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT SOLUTION CONTAINED 0.1 M
REMARK 280 SODIUM CITRATE TRIBASIC, PH 5.6, AND 35% V/V TERT-BUTANOL. NO
REMARK 280 ADDITIONAL CRYOPROTECTANT WAS NECESSARY FOR VITRIFICATION OF
REMARK 280 CRYSTALS IN LN2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I -4 2 d
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 Y,-X,-Z
REMARK 290 4555 -Y,X,-Z
REMARK 290 5555 -X+1/2,Y,-Z+3/4
REMARK 290 6555 X+1/2,-Y,-Z+3/4
REMARK 290 7555 -Y+1/2,-X,Z+3/4
REMARK 290 8555 Y+1/2,X,Z+3/4
REMARK 290 9555 X+1/2,Y+1/2,Z+1/2
REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 11555 Y+1/2,-X+1/2,-Z+1/2
REMARK 290 12555 -Y+1/2,X+1/2,-Z+1/2
REMARK 290 13555 -X,Y+1/2,-Z+1/4
REMARK 290 14555 X,-Y+1/2,-Z+1/4
REMARK 290 15555 -Y,-X+1/2,Z+1/4
REMARK 290 16555 Y,X+1/2,Z+1/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 -0.002443 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.001048 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.000350 0.998522 0.000698 0.00000
REMARK 290 SMTRY2 3 -1.001480 0.000350 -0.001748 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 0.000350 -0.998522 0.001745 0.00000
REMARK 290 SMTRY2 4 1.001480 -0.000350 0.000700 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 -1.000000 0.000698 0.000000 26.66274
REMARK 290 SMTRY2 5 0.000000 1.000000 -0.001048 0.01169
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.31248
REMARK 290 SMTRY1 6 1.000000 -0.000698 0.002444 26.66274
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.01169
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.31248
REMARK 290 SMTRY1 7 -0.000350 -0.998522 -0.000699 26.66274
REMARK 290 SMTRY2 7 -1.001480 0.000350 -0.000700 0.01169
REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 22.31248
REMARK 290 SMTRY1 8 0.000350 0.998522 -0.001745 26.66274
REMARK 290 SMTRY2 8 1.001480 -0.000350 0.001748 0.01169
REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 22.31248
REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 26.68116
REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 26.73729
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 14.87499
REMARK 290 SMTRY1 10 -1.000000 0.000000 -0.002443 26.68116
REMARK 290 SMTRY2 10 0.000000 -1.000000 0.001048 26.73729
REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 14.87499
REMARK 290 SMTRY1 11 -0.000350 0.998522 0.000698 26.68116
REMARK 290 SMTRY2 11 -1.001480 0.000350 -0.001748 26.73729
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 14.87499
REMARK 290 SMTRY1 12 0.000350 -0.998522 0.001745 26.68116
REMARK 290 SMTRY2 12 1.001480 -0.000350 0.000700 26.73729
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 14.87499
REMARK 290 SMTRY1 13 -1.000000 0.000698 0.000000 0.00024
REMARK 290 SMTRY2 13 0.000000 1.000000 -0.001048 26.73340
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 7.43749
REMARK 290 SMTRY1 14 1.000000 -0.000698 0.002444 0.00024
REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 26.73340
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 7.43749
REMARK 290 SMTRY1 15 -0.000350 -0.998522 -0.000699 0.00024
REMARK 290 SMTRY2 15 -1.001480 0.000350 -0.000700 26.73340
REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 7.43749
REMARK 290 SMTRY1 16 0.000350 0.998522 -0.001745 0.00024
REMARK 290 SMTRY2 16 1.001480 -0.000350 0.001748 26.73340
REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 7.43749
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 -0.002443 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.001048 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 101 LIES ON A SPECIAL POSITION.
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 11 CE NZ
REMARK 470 LYS A 14 CG CD CE NZ
REMARK 470 SER A 23 CA C O CB OG
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 22 -85.01 -118.27
REMARK 500
REMARK 500 REMARK: NULL
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2MAG RELATED DB: PDB
REMARK 900 NMR STRUCTURE OF MAGAININ 2 IN DPC MICELLES
REMARK 900 RELATED ID: 1DUM RELATED DB: PDB
REMARK 900 NMR STRUCTURE OF [F5Y, F16W] MAGAININ 2 BOUND TO PHOSPHOLIPID
REMARK 900 VESICLES
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THESE RESIDUES ARE MODIFIED TO ALANINE.
DBREF 4MGP A 1 23 UNP P11006 MAGA_XENLA 83 105
SEQADV 4MGP ALA A 8 UNP P11006 SER 90 SEE REMARK 999
SEQADV 4MGP ALA A 13 UNP P11006 GLY 95 SEE REMARK 999
SEQADV 4MGP ALA A 18 UNP P11006 GLY 100 SEE REMARK 999
SEQRES 1 A 23 GLY ILE GLY LYS PHE LEU HIS ALA ALA LYS LYS PHE ALA
SEQRES 2 A 23 LYS ALA PHE VAL ALA GLU ILE MET ASN SER
FORMUL 2 HOH *5(H2 O)
HELIX 1 1 GLY A 1 MET A 21 1 21
CRYST1 53.380 53.459 29.750 89.97 90.07 89.98 I -4 2 d 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018734 -0.000007 0.000022 0.00000
SCALE2 0.000000 0.018706 -0.000009 0.00000
SCALE3 0.000000 0.000000 0.033613 0.00000
ATOM 1 N GLY A 1 -10.159 7.612 -9.487 1.00 50.82 N
ATOM 2 CA GLY A 1 -10.992 7.591 -8.225 1.00 46.74 C
ATOM 3 C GLY A 1 -10.981 6.169 -7.717 1.00 41.46 C
ATOM 4 O GLY A 1 -9.951 5.538 -7.722 1.00 39.16 O
ATOM 5 N ILE A 2 -12.140 5.640 -7.360 1.00 40.47 N
ATOM 6 CA ILE A 2 -12.235 4.346 -6.712 1.00 34.61 C
ATOM 7 C ILE A 2 -11.571 3.202 -7.473 1.00 32.20 C
ATOM 8 O ILE A 2 -10.861 2.404 -6.866 1.00 31.27 O
ATOM 9 CB ILE A 2 -13.711 4.022 -6.384 1.00 37.03 C
ATOM 10 CG1 ILE A 2 -14.156 4.902 -5.234 1.00 39.71 C
ATOM 11 CG2 ILE A 2 -13.858 2.598 -5.905 1.00 36.86 C
ATOM 12 CD1 ILE A 2 -15.661 5.025 -5.095 1.00 46.12 C
ATOM 13 N GLY A 3 -11.804 3.101 -8.779 1.00 27.71 N
ATOM 14 CA GLY A 3 -11.387 1.961 -9.508 1.00 26.87 C
ATOM 15 C GLY A 3 -9.900 2.020 -9.551 1.00 28.37 C
ATOM 16 O GLY A 3 -9.218 0.995 -9.439 1.00 30.31 O
ATOM 17 N LYS A 4 -9.392 3.227 -9.709 1.00 31.40 N
ATOM 18 CA LYS A 4 -7.963 3.438 -9.877 1.00 32.73 C
ATOM 19 C LYS A 4 -7.223 3.095 -8.562 1.00 26.75 C
ATOM 20 O LYS A 4 -6.246 2.341 -8.559 1.00 25.38 O
ATOM 21 CB LYS A 4 -7.684 4.875 -10.334 1.00 38.49 C
ATOM 22 CG LYS A 4 -6.228 5.031 -10.745 1.00 48.01 C
ATOM 23 CD LYS A 4 -5.975 6.172 -11.726 1.00 58.92 C
ATOM 24 CE LYS A 4 -4.816 5.819 -12.696 1.00 75.07 C
ATOM 25 NZ LYS A 4 -4.800 6.445 -14.070 1.00 79.78 N
ATOM 26 N PHE A 5 -7.769 3.599 -7.474 1.00 26.09 N
ATOM 27 CA PHE A 5 -7.300 3.325 -6.135 1.00 23.41 C
ATOM 28 C PHE A 5 -7.240 1.840 -5.845 1.00 21.39 C
ATOM 29 O PHE A 5 -6.244 1.302 -5.411 1.00 20.97 O
ATOM 30 CB PHE A 5 -8.280 3.970 -5.259 1.00 24.63 C
ATOM 31 CG PHE A 5 -7.939 3.858 -3.840 1.00 28.10 C
ATOM 32 CD1 PHE A 5 -7.264 4.859 -3.223 1.00 30.16 C
ATOM 33 CD2 PHE A 5 -8.266 2.719 -3.144 1.00 30.40 C
ATOM 34 CE1 PHE A 5 -6.972 4.773 -1.909 1.00 34.19 C
ATOM 35 CE2 PHE A 5 -7.945 2.577 -1.816 1.00 34.48 C
ATOM 36 CZ PHE A 5 -7.300 3.628 -1.187 1.00 36.50 C
ATOM 37 N LEU A 6 -8.326 1.143 -6.152 1.00 22.97 N
ATOM 38 CA LEU A 6 -8.409 -0.297 -5.945 1.00 22.76 C
ATOM 39 C LEU A 6 -7.478 -1.083 -6.802 1.00 21.27 C
ATOM 40 O LEU A 6 -6.869 -2.058 -6.329 1.00 22.68 O
ATOM 41 CB LEU A 6 -9.868 -0.808 -6.097 1.00 27.28 C
ATOM 42 CG LEU A 6 -10.875 -0.278 -5.067 1.00 26.98 C
ATOM 43 CD1 LEU A 6 -12.222 -0.669 -5.598 1.00 30.02 C
ATOM 44 CD2 LEU A 6 -10.629 -0.784 -3.647 1.00 29.73 C
ATOM 45 N HIS A 7 -7.326 -0.677 -8.056 1.00 24.41 N
ATOM 46 CA HIS A 7 -6.365 -1.350 -8.905 1.00 27.15 C
ATOM 47 C HIS A 7 -4.921 -1.135 -8.404 1.00 21.80 C
ATOM 48 O HIS A 7 -4.163 -2.109 -8.258 1.00 22.51 O
ATOM 49 CB HIS A 7 -6.658 -1.045 -10.361 1.00 31.74 C
ATOM 50 CG HIS A 7 -8.006 -1.602 -10.778 1.00 47.16 C
ATOM 51 ND1 HIS A 7 -9.117 -0.811 -11.018 1.00 56.02 N
ATOM 52 CD2 HIS A 7 -8.452 -2.883 -10.868 1.00 54.82 C
ATOM 53 CE1 HIS A 7 -10.158 -1.567 -11.319 1.00 51.05 C
ATOM 54 NE2 HIS A 7 -9.788 -2.828 -11.212 1.00 55.44 N
ATOM 55 N ALA A 8 -4.599 0.084 -8.002 1.00 21.77 N
ATOM 56 CA ALA A 8 -3.303 0.373 -7.426 1.00 20.10 C
ATOM 57 C ALA A 8 -3.066 -0.358 -6.167 1.00 19.52 C
ATOM 58 O ALA A 8 -2.029 -0.974 -5.995 1.00 19.89 O
ATOM 59 CB ALA A 8 -3.204 1.833 -7.212 1.00 20.17 C
ATOM 60 N ALA A 9 -4.049 -0.396 -5.294 1.00 21.10 N
ATOM 61 CA ALA A 9 -3.902 -1.267 -4.136 1.00 21.18 C
ATOM 62 C ALA A 9 -3.679 -2.737 -4.392 1.00 20.22 C
ATOM 63 O ALA A 9 -2.893 -3.336 -3.749 1.00 20.22 O
ATOM 64 CB ALA A 9 -5.108 -1.111 -3.202 1.00 24.47 C
ATOM 65 N LYS A 10 -4.368 -3.336 -5.315 1.00 20.67 N
ATOM 66 CA LYS A 10 -4.154 -4.692 -5.635 1.00 21.61 C
ATOM 67 C LYS A 10 -2.795 -5.003 -6.194 1.00 21.79 C
ATOM 68 O LYS A 10 -2.161 -5.945 -5.772 1.00 24.12 O
ATOM 69 CB LYS A 10 -5.174 -5.075 -6.634 1.00 24.39 C
ATOM 70 CG LYS A 10 -5.130 -6.541 -6.816 1.00 26.69 C
ATOM 71 CD LYS A 10 -6.138 -6.944 -7.789 1.00 33.14 C
ATOM 72 CE LYS A 10 -6.252 -8.447 -7.761 1.00 39.28 C
ATOM 73 NZ LYS A 10 -6.976 -8.762 -9.015 1.00 47.44 N
ATOM 74 N LYS A 11 -2.347 -4.185 -7.120 1.00 23.36 N
ATOM 75 CA LYS A 11 -1.054 -4.281 -7.797 1.00 24.62 C
ATOM 76 C LYS A 11 0.059 -4.221 -6.718 1.00 21.91 C
ATOM 77 O LYS A 11 0.990 -5.017 -6.750 1.00 21.68 O
ATOM 78 CB LYS A 11 -0.999 -3.115 -8.836 1.00 29.36 C
ATOM 79 CG LYS A 11 -0.052 -3.105 -10.037 1.00 40.55 C
ATOM 80 CD LYS A 11 0.520 -1.675 -10.369 1.00 43.07 C
ATOM 81 N PHE A 12 -0.060 -3.323 -5.723 1.00 20.73 N
ATOM 82 CA PHE A 12 0.839 -3.255 -4.581 1.00 18.71 C
ATOM 83 C PHE A 12 0.780 -4.492 -3.720 1.00 18.85 C
ATOM 84 O PHE A 12 1.819 -5.020 -3.345 1.00 18.10 O
ATOM 85 CB PHE A 12 0.730 -1.953 -3.712 1.00 19.58 C
ATOM 86 CG PHE A 12 1.533 -2.048 -2.439 1.00 17.49 C
ATOM 87 CD1 PHE A 12 2.865 -2.038 -2.494 1.00 19.32 C
ATOM 88 CD2 PHE A 12 0.918 -2.294 -1.209 1.00 19.72 C
ATOM 89 CE1 PHE A 12 3.601 -2.249 -1.324 1.00 21.68 C
ATOM 90 CE2 PHE A 12 1.617 -2.490 -0.063 1.00 21.36 C
ATOM 91 CZ PHE A 12 2.971 -2.452 -0.117 1.00 20.35 C
ATOM 92 N ALA A 13 -0.419 -4.937 -3.369 1.00 21.51 N
ATOM 93 CA ALA A 13 -0.581 -6.119 -2.572 1.00 22.04 C
ATOM 94 C ALA A 13 0.038 -7.356 -3.291 1.00 22.17 C
ATOM 95 O ALA A 13 0.689 -8.161 -2.610 1.00 20.82 O
ATOM 96 CB ALA A 13 -2.050 -6.313 -2.259 1.00 21.67 C
ATOM 97 N LYS A 14 -0.163 -7.490 -4.611 1.00 22.65 N
ATOM 98 CA LYS A 14 0.439 -8.597 -5.367 1.00 23.65 C
ATOM 99 C LYS A 14 1.990 -8.557 -5.326 1.00 23.32 C
ATOM 100 O LYS A 14 2.639 -9.531 -5.039 1.00 26.77 O
ATOM 101 CB LYS A 14 -0.092 -8.630 -6.799 1.00 26.85 C
ATOM 102 N ALA A 15 2.587 -7.404 -5.476 1.00 22.30 N
ATOM 103 CA ALA A 15 4.015 -7.259 -5.339 1.00 22.46 C
ATOM 104 C ALA A 15 4.571 -7.480 -3.966 1.00 21.89 C
ATOM 105 O ALA A 15 5.651 -8.040 -3.815 1.00 22.22 O
ATOM 106 CB ALA A 15 4.418 -5.877 -5.875 1.00 22.25 C
ATOM 107 N PHE A 16 3.838 -7.014 -2.959 1.00 23.05 N
ATOM 108 CA PHE A 16 4.177 -7.221 -1.589 1.00 21.92 C
ATOM 109 C PHE A 16 4.304 -8.743 -1.232 1.00 23.39 C
ATOM 110 O PHE A 16 5.242 -9.199 -0.522 1.00 22.87 O
ATOM 111 CB PHE A 16 3.181 -6.545 -0.573 1.00 22.47 C
ATOM 112 CG PHE A 16 3.613 -6.768 0.878 1.00 23.02 C
ATOM 113 CD1 PHE A 16 4.703 -6.045 1.405 1.00 23.60 C
ATOM 114 CD2 PHE A 16 3.047 -7.754 1.639 1.00 21.72 C
ATOM 115 CE1 PHE A 16 5.186 -6.279 2.639 1.00 23.50 C
ATOM 116 CE2 PHE A 16 3.555 -7.993 2.879 1.00 23.86 C
ATOM 117 CZ PHE A 16 4.619 -7.258 3.381 1.00 23.82 C
ATOM 118 N VAL A 17 3.292 -9.488 -1.664 1.00 26.09 N
ATOM 119 CA VAL A 17 3.212 -10.938 -1.374 1.00 31.03 C
ATOM 120 C VAL A 17 4.377 -11.669 -2.131 1.00 30.50 C
ATOM 121 O VAL A 17 5.153 -12.393 -1.473 1.00 31.91 O
ATOM 122 CB VAL A 17 1.794 -11.473 -1.712 1.00 28.89 C
ATOM 123 CG1 VAL A 17 1.788 -12.966 -1.975 1.00 31.96 C
ATOM 124 CG2 VAL A 17 0.831 -11.103 -0.598 1.00 28.33 C
ATOM 125 N ALA A 18 4.535 -11.351 -3.427 1.00 29.41 N
ATOM 126 CA ALA A 18 5.643 -11.816 -4.258 1.00 28.55 C
ATOM 127 C ALA A 18 6.988 -11.545 -3.589 1.00 31.60 C
ATOM 128 O ALA A 18 7.757 -12.477 -3.336 1.00 35.43 O
ATOM 129 CB ALA A 18 5.540 -11.258 -5.699 1.00 27.60 C
ATOM 130 N GLU A 19 7.265 -10.309 -3.190 1.00 31.34 N
ATOM 131 CA GLU A 19 8.443 -10.063 -2.345 1.00 33.74 C
ATOM 132 C GLU A 19 8.597 -10.928 -1.068 1.00 31.95 C
ATOM 133 O GLU A 19 9.676 -11.394 -0.856 1.00 34.09 O
ATOM 134 CB GLU A 19 8.604 -8.526 -2.046 1.00 34.90 C
ATOM 135 CG GLU A 19 9.405 -8.149 -0.803 1.00 41.17 C
ATOM 136 CD GLU A 19 10.916 -8.212 -1.027 1.00 46.31 C
ATOM 137 OE1 GLU A 19 11.230 -8.266 -2.248 1.00 42.81 O
ATOM 138 OE2 GLU A 19 11.744 -8.159 -0.017 1.00 45.66 O1-
ATOM 139 N ILE A 20 7.600 -11.104 -0.196 1.00 33.26 N
ATOM 140 CA ILE A 20 7.810 -11.877 1.056 1.00 33.39 C
ATOM 141 C ILE A 20 7.879 -13.425 0.839 1.00 33.62 C
ATOM 142 O ILE A 20 8.498 -14.197 1.621 1.00 32.84 O
ATOM 143 CB ILE A 20 6.800 -11.579 2.183 1.00 32.13 C
ATOM 144 CG1 ILE A 20 5.393 -11.934 1.776 1.00 32.72 C
ATOM 145 CG2 ILE A 20 6.981 -10.182 2.743 1.00 35.17 C
ATOM 146 CD1 ILE A 20 4.442 -11.838 2.962 1.00 34.78 C
ATOM 147 N MET A 21 7.302 -13.840 -0.272 1.00 36.11 N
ATOM 148 CA AMET A 21 7.314 -15.244 -0.690 0.50 38.75 C
ATOM 149 CA BMET A 21 7.330 -15.239 -0.659 0.50 38.61 C
ATOM 150 C MET A 21 8.631 -15.631 -1.350 1.00 41.21 C
ATOM 151 O MET A 21 8.770 -16.741 -1.772 1.00 48.21 O
ATOM 152 CB AMET A 21 6.156 -15.579 -1.651 0.50 36.27 C
ATOM 153 CB BMET A 21 6.115 -15.581 -1.517 0.50 35.88 C
ATOM 154 CG AMET A 21 4.773 -15.740 -1.001 0.50 38.76 C
ATOM 155 CG BMET A 21 4.812 -15.496 -0.714 0.50 38.06 C
ATOM 156 SD AMET A 21 4.510 -17.076 0.186 0.50 41.75 S
ATOM 157 SD BMET A 21 4.662 -16.662 0.653 0.50 38.71 S
ATOM 158 CE AMET A 21 5.015 -16.291 1.703 0.50 36.78 C
ATOM 159 CE BMET A 21 4.291 -18.076 -0.396 0.50 36.87 C
ATOM 160 N ASN A 22 9.589 -14.710 -1.444 1.00 46.77 N
ATOM 161 CA ASN A 22 10.966 -15.040 -1.896 1.00 49.29 C
ATOM 162 C ASN A 22 11.998 -14.769 -0.868 1.00 47.79 C
ATOM 163 O ASN A 22 12.323 -15.670 -0.098 1.00 53.35 O
ATOM 164 CB ASN A 22 11.267 -14.298 -3.151 1.00 51.55 C
ATOM 165 CG ASN A 22 10.585 -14.946 -4.313 1.00 56.01 C
ATOM 166 OD1 ASN A 22 9.405 -14.710 -4.598 1.00 46.20 O
ATOM 167 ND2 ASN A 22 11.304 -15.867 -4.936 1.00 68.04 N
ATOM 168 N SER A 23 12.468 -13.525 -0.806 1.00 47.16 N
TER 169 SER A 23
HETATM 170 O HOH A 101 0.009 -0.004 -7.682 0.50 23.66 O
HETATM 171 O HOH A 102 10.018 -13.313 4.594 0.50 23.71 O
HETATM 172 O HOH A 103 -7.740 7.902 -5.667 1.00 30.09 O
HETATM 173 O HOH A 104 1.733 -6.076 -9.024 1.00 38.46 O
HETATM 174 O HOH A 105 1.598 -12.231 -5.505 1.00 40.26 O
MASTER 332 0 0 1 0 0 0 6 168 1 0 2
END