data_4LTK
#
_entry.id 4LTK
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4LTK pdb_00004ltk 10.2210/pdb4ltk/pdb
NDB NA2620 ? ?
RCSB RCSB081068 ? ?
WWPDB D_1000081068 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3QRN 'High resolution hydrated structure' unspecified
PDB 4LTG . unspecified
PDB 4LTH . unspecified
PDB 4LTI . unspecified
PDB 4LTJ . unspecified
PDB 4LTF . unspecified
PDB 4LTL . unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4LTK
_pdbx_database_status.recvd_initial_deposition_date 2013-07-23
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Hall, J.P.' 1
'Sanchez-Weatherby, J.' 2
'Cardin, C.J.' 3
#
_citation.id primary
_citation.title 'Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking.'
_citation.journal_abbrev J.Am.Chem.Soc.
_citation.journal_volume 136
_citation.page_first 17505
_citation.page_last 17512
_citation.year 2014
_citation.journal_id_ASTM JACSAT
_citation.country US
_citation.journal_id_ISSN 0002-7863
_citation.journal_id_CSD 0004
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 25393319
_citation.pdbx_database_id_DOI 10.1021/ja508745x
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Hall, J.P.' 1 ?
primary 'Sanchez-Weatherby, J.' 2 ?
primary 'Alberti, C.' 3 ?
primary 'Quimper, C.H.' 4 ?
primary
;O'Sullivan, K.
;
5 ?
primary 'Brazier, J.A.' 6 ?
primary 'Winter, G.' 7 ?
primary 'Sorensen, T.' 8 ?
primary 'Kelly, J.M.' 9 ?
primary 'Cardin, D.J.' 10 ?
primary 'Cardin, C.J.' 11 ?
#
_cell.entry_id 4LTK
_cell.length_a 44.150
_cell.length_b 44.150
_cell.length_c 27.490
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4LTK
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn DNA 3045.992 1 ? ? ? ?
2 non-polymer syn 'Ru(tap)2(dppz) complex' 747.732 1 ? ? ? ?
3 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ?
4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ?
5 water nat water 18.015 31 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DC n
1 3 DG n
1 4 DG n
1 5 DC n
1 6 DG n
1 7 DC n
1 8 DC n
1 9 DG n
1 10 DA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'DNA synthesised by ATDBio'
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4LTK
_struct_ref.pdbx_db_accession 4LTK
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code TCGGCGCCGA
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4LTK
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 10
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4LTK
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 10
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 10
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327
CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
RKL non-polymer . 'Ru(tap)2(dppz) complex' ? 'C38 H22 N12 Ru 2' 747.732
#
_exptl.entry_id 4LTK
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.20
_exptl_crystal.density_percent_sol 44.06
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.3
_exptl_crystal_grow.pdbx_details
;1ul 1mM d(TCGGCGCCGA)2, 1ul 4mM lambda-[Ru(TAP)2(dppz)]2+, 6ul 12mM spermine, 10% MPD, 40mM sodium cacodylate, 80mM KCl, 20mM BaCl2. Equilibriated against 1ml 35% MPD. Crystal was dehydrated to 74% relative humidity on the beamline using the HC1b., pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 298
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector PIXEL
_diffrn_detector.type 'DECTRIS PILATUS 6M'
_diffrn_detector.pdbx_collection_date 2012-12-13
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'dual si(111)'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.8266
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'DIAMOND BEAMLINE I02'
_diffrn_source.pdbx_synchrotron_site Diamond
_diffrn_source.pdbx_synchrotron_beamline I02
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.8266
#
_reflns.entry_id 4LTK
_reflns.observed_criterion_sigma_I 2.6
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 27.49
_reflns.d_resolution_high 1.45
_reflns.number_obs 5810
_reflns.number_all 5180
_reflns.percent_possible_obs 99.9
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.45
_reflns_shell.d_res_low 1.49
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4LTK
_refine.ls_number_reflns_obs 4913
_refine.ls_number_reflns_all 4913
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 23.35
_refine.ls_d_res_high 1.45
_refine.ls_percent_reflns_obs 99.90
_refine.ls_R_factor_obs 0.13685
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.13609
_refine.ls_R_factor_R_free 0.15352
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.6
_refine.ls_number_reflns_R_free 238
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.978
_refine.correlation_coeff_Fo_to_Fc_free 0.982
_refine.B_iso_mean 20.541
_refine.aniso_B[1][1] 0.13
_refine.aniso_B[2][2] 0.13
_refine.aniso_B[3][3] -0.26
_refine.aniso_B[1][2] -0.00
_refine.aniso_B[1][3] -0.00
_refine.aniso_B[2][3] -0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model 'PDB ENTRY 3S80'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.055
_refine.pdbx_overall_ESU_R_Free 0.055
_refine.overall_SU_ML 0.035
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 0.942
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 202
_refine_hist.pdbx_number_atoms_ligand 53
_refine_hist.number_atoms_solvent 31
_refine_hist.number_atoms_total 286
_refine_hist.d_res_high 1.45
_refine_hist.d_res_low 23.35
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 0.021 0.013 ? 290 ? 'X-RAY DIFFRACTION'
r_bond_other_d 0.002 0.020 ? 134 ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 2.893 1.598 ? 456 ? 'X-RAY DIFFRACTION'
r_angle_other_deg 1.635 3.000 ? 308 ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_chiral_restr 0.082 0.200 ? 30 ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 0.038 0.020 ? 176 ? 'X-RAY DIFFRACTION'
r_gen_planes_other 0.005 0.020 ? 78 ? 'X-RAY DIFFRACTION'
r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scbond_it 2.331 1.963 ? 290 ? 'X-RAY DIFFRACTION'
r_scbond_other 2.327 1.964 ? 291 ? 'X-RAY DIFFRACTION'
r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scangle_other 3.558 2.932 ? 457 ? 'X-RAY DIFFRACTION'
r_long_range_B_refined 4.741 20.843 ? 632 ? 'X-RAY DIFFRACTION'
r_long_range_B_other 4.736 20.775 ? 625 ? 'X-RAY DIFFRACTION'
r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.450
_refine_ls_shell.d_res_low 1.488
_refine_ls_shell.number_reflns_R_work 359
_refine_ls_shell.R_factor_R_work 0.205
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free 0.247
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 19
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 4LTK
_struct.title
'Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (6/7)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4LTK
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Dehydration, HC1b, Kinking, ruthenium, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 102 1_555 ? ? ? ? ? ? ? 2.858 ? ?
metalc2 metalc ? ? C BA . BA ? ? ? 1_555 E HOH . O ? ? A BA 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.794 ? ?
metalc3 metalc ? ? C BA . BA ? ? ? 1_555 E HOH . O ? ? A BA 102 A HOH 210 1_555 ? ? ? ? ? ? ? 2.796 ? ?
hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A RKL 101 ? 11 'BINDING SITE FOR RESIDUE RKL A 101'
AC2 Software A BA 102 ? 9 'BINDING SITE FOR RESIDUE BA A 102'
AC3 Software A CL 103 ? 6 'BINDING SITE FOR RESIDUE CL A 103'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 11 DT A 1 ? DT A 1 . ? 3_664 ?
2 AC1 11 DC A 2 ? DC A 2 . ? 3_664 ?
3 AC1 11 DG A 3 ? DG A 3 . ? 1_555 ?
4 AC1 11 DG A 3 ? DG A 3 . ? 3_664 ?
5 AC1 11 DG A 4 ? DG A 4 . ? 1_555 ?
6 AC1 11 DC A 5 ? DC A 5 . ? 1_555 ?
7 AC1 11 DC A 7 ? DC A 7 . ? 8_775 ?
8 AC1 11 DC A 8 ? DC A 8 . ? 8_775 ?
9 AC1 11 DA A 10 ? DA A 10 . ? 7_365 ?
10 AC1 11 HOH E . ? HOH A 215 . ? 3_664 ?
11 AC1 11 HOH E . ? HOH A 226 . ? 3_664 ?
12 AC2 9 DG A 3 ? DG A 3 . ? 1_555 ?
13 AC2 9 DG A 4 ? DG A 4 . ? 1_555 ?
14 AC2 9 CL D . ? CL A 103 . ? 1_555 ?
15 AC2 9 CL D . ? CL A 103 . ? 8_775 ?
16 AC2 9 HOH E . ? HOH A 205 . ? 8_775 ?
17 AC2 9 HOH E . ? HOH A 206 . ? 1_555 ?
18 AC2 9 HOH E . ? HOH A 207 . ? 8_775 ?
19 AC2 9 HOH E . ? HOH A 210 . ? 1_555 ?
20 AC2 9 HOH E . ? HOH A 216 . ? 8_775 ?
21 AC3 6 DG A 4 ? DG A 4 . ? 1_555 ?
22 AC3 6 DG A 4 ? DG A 4 . ? 8_775 ?
23 AC3 6 DC A 5 ? DC A 5 . ? 1_555 ?
24 AC3 6 DC A 5 ? DC A 5 . ? 8_775 ?
25 AC3 6 BA C . ? BA A 102 . ? 1_555 ?
26 AC3 6 BA C . ? BA A 102 . ? 8_775 ?
#
_database_PDB_matrix.entry_id 4LTK
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 4LTK
_atom_sites.fract_transf_matrix[1][1] 0.022650
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.022650
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.036377
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
BA
C
CL
N
O
P
RU
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DT A 1 1 ? 13.151 71.951 19.061 0.70 55.41 ? 1 DT A "O5'" 1
ATOM 2 C "C5'" . DT A 1 1 ? 12.649 73.287 19.141 0.70 51.75 ? 1 DT A "C5'" 1
ATOM 3 C "C4'" . DT A 1 1 ? 13.135 74.061 17.942 0.70 50.44 ? 1 DT A "C4'" 1
ATOM 4 O "O4'" . DT A 1 1 ? 13.633 75.324 18.439 0.70 52.80 ? 1 DT A "O4'" 1
ATOM 5 C "C3'" . DT A 1 1 ? 14.288 73.415 17.162 0.70 50.66 ? 1 DT A "C3'" 1
ATOM 6 O "O3'" . DT A 1 1 ? 13.866 72.650 16.018 0.70 42.26 ? 1 DT A "O3'" 1
ATOM 7 C "C2'" . DT A 1 1 ? 15.063 74.615 16.656 0.70 56.84 ? 1 DT A "C2'" 1
ATOM 8 C "C1'" . DT A 1 1 ? 14.765 75.731 17.674 0.70 55.46 ? 1 DT A "C1'" 1
ATOM 9 N N1 . DT A 1 1 ? 15.874 76.064 18.619 0.70 49.19 ? 1 DT A N1 1
ATOM 10 C C2 . DT A 1 1 ? 16.259 77.381 18.706 0.70 38.38 ? 1 DT A C2 1
ATOM 11 O O2 . DT A 1 1 ? 15.723 78.277 18.072 0.70 37.08 ? 1 DT A O2 1
ATOM 12 N N3 . DT A 1 1 ? 17.290 77.614 19.579 0.70 27.22 ? 1 DT A N3 1
ATOM 13 C C4 . DT A 1 1 ? 17.962 76.685 20.336 0.70 30.03 ? 1 DT A C4 1
ATOM 14 O O4 . DT A 1 1 ? 18.834 77.038 21.083 0.70 28.60 ? 1 DT A O4 1
ATOM 15 C C5 . DT A 1 1 ? 17.516 75.336 20.205 0.70 37.20 ? 1 DT A C5 1
ATOM 16 C C7 . DT A 1 1 ? 18.207 74.274 21.002 0.70 38.74 ? 1 DT A C7 1
ATOM 17 C C6 . DT A 1 1 ? 16.521 75.082 19.344 0.70 48.48 ? 1 DT A C6 1
ATOM 18 P P . DC A 1 2 ? 14.687 71.305 15.483 0.70 39.19 ? 2 DC A P 1
ATOM 19 O OP1 . DC A 1 2 ? 14.506 70.197 16.415 0.70 35.16 ? 2 DC A OP1 1
ATOM 20 O OP2 . DC A 1 2 ? 16.021 71.735 14.999 0.70 34.17 ? 2 DC A OP2 1
ATOM 21 O "O5'" . DC A 1 2 ? 13.793 70.805 14.238 1.00 35.64 ? 2 DC A "O5'" 1
ATOM 22 C "C5'" . DC A 1 2 ? 13.424 71.763 13.254 1.00 24.62 ? 2 DC A "C5'" 1
ATOM 23 C "C4'" . DC A 1 2 ? 12.202 71.310 12.499 1.00 17.52 ? 2 DC A "C4'" 1
ATOM 24 O "O4'" . DC A 1 2 ? 11.092 71.245 13.397 1.00 18.00 ? 2 DC A "O4'" 1
ATOM 25 C "C3'" . DC A 1 2 ? 11.838 72.277 11.382 1.00 16.67 ? 2 DC A "C3'" 1
ATOM 26 O "O3'" . DC A 1 2 ? 12.341 71.760 10.146 1.00 16.41 ? 2 DC A "O3'" 1
ATOM 27 C "C2'" . DC A 1 2 ? 10.330 72.371 11.443 1.00 16.92 ? 2 DC A "C2'" 1
ATOM 28 C "C1'" . DC A 1 2 ? 9.947 71.841 12.835 1.00 18.02 ? 2 DC A "C1'" 1
ATOM 29 N N1 . DC A 1 2 ? 9.488 72.851 13.798 1.00 15.89 ? 2 DC A N1 1
ATOM 30 C C2 . DC A 1 2 ? 8.259 72.712 14.413 1.00 15.74 ? 2 DC A C2 1
ATOM 31 O O2 . DC A 1 2 ? 7.618 71.689 14.217 1.00 17.65 ? 2 DC A O2 1
ATOM 32 N N3 . DC A 1 2 ? 7.870 73.610 15.338 1.00 16.63 ? 2 DC A N3 1
ATOM 33 C C4 . DC A 1 2 ? 8.624 74.660 15.584 1.00 16.76 ? 2 DC A C4 1
ATOM 34 N N4 . DC A 1 2 ? 8.205 75.508 16.494 1.00 17.39 ? 2 DC A N4 1
ATOM 35 C C5 . DC A 1 2 ? 9.859 74.870 14.916 1.00 15.74 ? 2 DC A C5 1
ATOM 36 C C6 . DC A 1 2 ? 10.251 73.946 14.034 1.00 17.01 ? 2 DC A C6 1
ATOM 37 P P . DG A 1 3 ? 12.329 72.617 8.819 1.00 18.10 ? 3 DG A P 1
ATOM 38 O OP1 . DG A 1 3 ? 13.266 71.882 7.904 1.00 22.80 ? 3 DG A OP1 1
ATOM 39 O OP2 . DG A 1 3 ? 12.446 74.082 9.145 1.00 20.28 ? 3 DG A OP2 1
ATOM 40 O "O5'" . DG A 1 3 ? 10.865 72.422 8.249 1.00 17.41 ? 3 DG A "O5'" 1
ATOM 41 C "C5'" . DG A 1 3 ? 10.465 71.156 7.704 1.00 15.31 ? 3 DG A "C5'" 1
ATOM 42 C "C4'" . DG A 1 3 ? 8.982 71.126 7.545 1.00 15.60 ? 3 DG A "C4'" 1
ATOM 43 O "O4'" . DG A 1 3 ? 8.365 71.204 8.859 1.00 16.77 ? 3 DG A "O4'" 1
ATOM 44 C "C3'" . DG A 1 3 ? 8.397 72.279 6.745 1.00 14.81 ? 3 DG A "C3'" 1
ATOM 45 O "O3'" . DG A 1 3 ? 8.374 71.958 5.326 1.00 15.57 ? 3 DG A "O3'" 1
ATOM 46 C "C2'" . DG A 1 3 ? 6.992 72.391 7.310 1.00 15.72 ? 3 DG A "C2'" 1
ATOM 47 C "C1'" . DG A 1 3 ? 7.170 71.980 8.760 1.00 15.38 ? 3 DG A "C1'" 1
ATOM 48 N N9 . DG A 1 3 ? 7.300 73.116 9.661 1.00 15.10 ? 3 DG A N9 1
ATOM 49 C C8 . DG A 1 3 ? 8.237 74.120 9.567 1.00 16.21 ? 3 DG A C8 1
ATOM 50 N N7 . DG A 1 3 ? 8.139 75.005 10.528 1.00 14.54 ? 3 DG A N7 1
ATOM 51 C C5 . DG A 1 3 ? 7.128 74.516 11.335 1.00 13.25 ? 3 DG A C5 1
ATOM 52 C C6 . DG A 1 3 ? 6.564 75.054 12.486 1.00 14.38 ? 3 DG A C6 1
ATOM 53 O O6 . DG A 1 3 ? 6.925 76.047 13.116 1.00 15.09 ? 3 DG A O6 1
ATOM 54 N N1 . DG A 1 3 ? 5.518 74.272 12.961 1.00 14.43 ? 3 DG A N1 1
ATOM 55 C C2 . DG A 1 3 ? 5.045 73.152 12.364 1.00 14.84 ? 3 DG A C2 1
ATOM 56 N N2 . DG A 1 3 ? 3.995 72.580 12.941 1.00 16.09 ? 3 DG A N2 1
ATOM 57 N N3 . DG A 1 3 ? 5.549 72.636 11.265 1.00 14.22 ? 3 DG A N3 1
ATOM 58 C C4 . DG A 1 3 ? 6.603 73.346 10.819 1.00 13.63 ? 3 DG A C4 1
ATOM 59 P P . DG A 1 4 ? 8.534 73.044 4.234 1.00 16.67 ? 4 DG A P 1
ATOM 60 O OP1 . DG A 1 4 ? 8.855 72.296 2.968 1.00 19.99 ? 4 DG A OP1 1
ATOM 61 O OP2 . DG A 1 4 ? 9.473 74.101 4.715 1.00 17.53 ? 4 DG A OP2 1
ATOM 62 O "O5'" . DG A 1 4 ? 7.112 73.677 4.164 1.00 15.96 ? 4 DG A "O5'" 1
ATOM 63 C "C5'" . DG A 1 4 ? 5.955 72.962 3.822 1.00 16.96 ? 4 DG A "C5'" 1
ATOM 64 C "C4'" . DG A 1 4 ? 4.788 73.904 3.639 1.00 17.27 ? 4 DG A "C4'" 1
ATOM 65 O "O4'" . DG A 1 4 ? 4.515 74.505 4.924 1.00 16.10 ? 4 DG A "O4'" 1
ATOM 66 C "C3'" . DG A 1 4 ? 5.019 75.054 2.669 1.00 15.87 ? 4 DG A "C3'" 1
ATOM 67 O "O3'" . DG A 1 4 ? 3.775 75.439 2.080 1.00 18.85 ? 4 DG A "O3'" 1
ATOM 68 C "C2'" . DG A 1 4 ? 5.482 76.197 3.549 1.00 15.19 ? 4 DG A "C2'" 1
ATOM 69 C "C1'" . DG A 1 4 ? 4.750 75.910 4.855 1.00 15.55 ? 4 DG A "C1'" 1
ATOM 70 N N9 . DG A 1 4 ? 5.472 76.317 6.085 1.00 15.65 ? 4 DG A N9 1
ATOM 71 C C8 . DG A 1 4 ? 6.778 76.032 6.407 1.00 15.40 ? 4 DG A C8 1
ATOM 72 N N7 . DG A 1 4 ? 7.110 76.436 7.603 1.00 13.84 ? 4 DG A N7 1
ATOM 73 C C5 . DG A 1 4 ? 5.964 77.052 8.087 1.00 14.09 ? 4 DG A C5 1
ATOM 74 C C6 . DG A 1 4 ? 5.737 77.723 9.318 1.00 13.43 ? 4 DG A C6 1
ATOM 75 O O6 . DG A 1 4 ? 6.533 77.910 10.232 1.00 14.77 ? 4 DG A O6 1
ATOM 76 N N1 . DG A 1 4 ? 4.443 78.222 9.402 1.00 13.80 ? 4 DG A N1 1
ATOM 77 C C2 . DG A 1 4 ? 3.469 78.067 8.443 1.00 13.88 ? 4 DG A C2 1
ATOM 78 N N2 . DG A 1 4 ? 2.260 78.578 8.732 1.00 16.41 ? 4 DG A N2 1
ATOM 79 N N3 . DG A 1 4 ? 3.652 77.415 7.303 1.00 14.40 ? 4 DG A N3 1
ATOM 80 C C4 . DG A 1 4 ? 4.937 76.977 7.174 1.00 14.33 ? 4 DG A C4 1
ATOM 81 P P . DC A 1 5 ? 3.676 76.497 0.857 1.00 20.25 ? 5 DC A P 1
ATOM 82 O OP1 . DC A 1 5 ? 2.820 75.843 -0.173 1.00 25.23 ? 5 DC A OP1 1
ATOM 83 O OP2 . DC A 1 5 ? 4.981 77.102 0.536 1.00 20.99 ? 5 DC A OP2 1
ATOM 84 O "O5'" . DC A 1 5 ? 2.823 77.669 1.497 1.00 20.59 ? 5 DC A "O5'" 1
ATOM 85 C "C5'" . DC A 1 5 ? 1.399 77.616 1.512 1.00 20.97 ? 5 DC A "C5'" 1
ATOM 86 C "C4'" . DC A 1 5 ? 0.854 78.868 2.125 1.00 17.15 ? 5 DC A "C4'" 1
ATOM 87 O "O4'" . DC A 1 5 ? 1.229 78.911 3.505 1.00 18.16 ? 5 DC A "O4'" 1
ATOM 88 C "C3'" . DC A 1 5 ? 1.439 80.125 1.536 1.00 18.67 ? 5 DC A "C3'" 1
ATOM 89 O "O3'" . DC A 1 5 ? 0.522 80.412 0.501 1.00 21.10 ? 5 DC A "O3'" 1
ATOM 90 C "C2'" . DC A 1 5 ? 1.397 81.121 2.671 1.00 17.75 ? 5 DC A "C2'" 1
ATOM 91 C "C1'" . DC A 1 5 ? 1.409 80.251 3.914 1.00 16.84 ? 5 DC A "C1'" 1
ATOM 92 N N1 . DC A 1 5 ? 2.671 80.278 4.604 1.00 17.11 ? 5 DC A N1 1
ATOM 93 C C2 . DC A 1 5 ? 2.721 80.767 5.910 1.00 17.44 ? 5 DC A C2 1
ATOM 94 O O2 . DC A 1 5 ? 1.684 81.198 6.432 1.00 20.69 ? 5 DC A O2 1
ATOM 95 N N3 . DC A 1 5 ? 3.866 80.669 6.604 1.00 16.24 ? 5 DC A N3 1
ATOM 96 C C4 . DC A 1 5 ? 4.964 80.167 6.019 1.00 14.94 ? 5 DC A C4 1
ATOM 97 N N4 . DC A 1 5 ? 6.072 80.099 6.752 1.00 13.94 ? 5 DC A N4 1
ATOM 98 C C5 . DC A 1 5 ? 4.937 79.623 4.708 1.00 16.52 ? 5 DC A C5 1
ATOM 99 C C6 . DC A 1 5 ? 3.784 79.735 4.022 1.00 16.70 ? 5 DC A C6 1
ATOM 100 P P . DG A 1 6 ? 1.051 80.896 -0.975 1.00 25.84 ? 6 DG A P 1
ATOM 101 O OP1 . DG A 1 6 ? -0.163 80.987 -1.851 1.00 30.37 ? 6 DG A OP1 1
ATOM 102 O OP2 . DG A 1 6 ? 2.314 80.284 -1.343 1.00 24.78 ? 6 DG A OP2 1
ATOM 103 O "O5'" . DG A 1 6 ? 1.541 82.392 -0.754 1.00 23.85 ? 6 DG A "O5'" 1
ATOM 104 C "C5'" . DG A 1 6 ? 0.672 83.454 -0.355 1.00 22.21 ? 6 DG A "C5'" 1
ATOM 105 C "C4'" . DG A 1 6 ? 1.422 84.758 -0.371 1.00 19.98 ? 6 DG A "C4'" 1
ATOM 106 O "O4'" . DG A 1 6 ? 2.339 84.757 0.743 1.00 20.69 ? 6 DG A "O4'" 1
ATOM 107 C "C3'" . DG A 1 6 ? 2.276 85.025 -1.617 1.00 22.35 ? 6 DG A "C3'" 1
ATOM 108 O "O3'" . DG A 1 6 ? 2.257 86.471 -1.766 1.00 22.58 ? 6 DG A "O3'" 1
ATOM 109 C "C2'" . DG A 1 6 ? 3.646 84.501 -1.216 1.00 21.61 ? 6 DG A "C2'" 1
ATOM 110 C "C1'" . DG A 1 6 ? 3.684 84.803 0.277 1.00 19.40 ? 6 DG A "C1'" 1
ATOM 111 N N9 . DG A 1 6 ? 4.464 83.856 1.079 1.00 17.49 ? 6 DG A N9 1
ATOM 112 C C8 . DG A 1 6 ? 4.732 82.538 0.820 1.00 17.91 ? 6 DG A C8 1
ATOM 113 N N7 . DG A 1 6 ? 5.460 81.976 1.749 1.00 17.61 ? 6 DG A N7 1
ATOM 114 C C5 . DG A 1 6 ? 5.709 82.999 2.656 1.00 14.43 ? 6 DG A C5 1
ATOM 115 C C6 . DG A 1 6 ? 6.460 83.005 3.840 1.00 17.44 ? 6 DG A C6 1
ATOM 116 O O6 . DG A 1 6 ? 7.115 82.068 4.348 1.00 17.28 ? 6 DG A O6 1
ATOM 117 N N1 . DG A 1 6 ? 6.389 84.237 4.484 1.00 16.49 ? 6 DG A N1 1
ATOM 118 C C2 . DG A 1 6 ? 5.797 85.354 3.972 1.00 16.76 ? 6 DG A C2 1
ATOM 119 N N2 . DG A 1 6 ? 5.868 86.462 4.703 1.00 18.16 ? 6 DG A N2 1
ATOM 120 N N3 . DG A 1 6 ? 5.126 85.367 2.839 1.00 17.71 ? 6 DG A N3 1
ATOM 121 C C4 . DG A 1 6 ? 5.112 84.166 2.249 1.00 16.93 ? 6 DG A C4 1
ATOM 122 P P . DC A 1 7 ? 3.024 87.165 -3.031 1.00 25.86 ? 7 DC A P 1
ATOM 123 O OP1 . DC A 1 7 ? 2.251 88.402 -3.316 1.00 29.28 ? 7 DC A OP1 1
ATOM 124 O OP2 . DC A 1 7 ? 3.305 86.224 -4.032 1.00 23.18 ? 7 DC A OP2 1
ATOM 125 O "O5'" . DC A 1 7 ? 4.461 87.530 -2.426 1.00 20.01 ? 7 DC A "O5'" 1
ATOM 126 C "C5'" . DC A 1 7 ? 4.593 88.609 -1.552 1.00 19.87 ? 7 DC A "C5'" 1
ATOM 127 C "C4'" . DC A 1 7 ? 6.012 88.674 -1.044 1.00 18.57 ? 7 DC A "C4'" 1
ATOM 128 O "O4'" . DC A 1 7 ? 6.159 87.606 -0.094 1.00 19.11 ? 7 DC A "O4'" 1
ATOM 129 C "C3'" . DC A 1 7 ? 7.110 88.372 -2.021 1.00 18.62 ? 7 DC A "C3'" 1
ATOM 130 O "O3'" . DC A 1 7 ? 7.326 89.532 -2.842 1.00 18.80 ? 7 DC A "O3'" 1
ATOM 131 C "C2'" . DC A 1 7 ? 8.262 88.075 -1.078 1.00 17.90 ? 7 DC A "C2'" 1
ATOM 132 C "C1'" . DC A 1 7 ? 7.555 87.504 0.156 1.00 18.28 ? 7 DC A "C1'" 1
ATOM 133 N N1 . DC A 1 7 ? 7.863 86.091 0.412 1.00 16.78 ? 7 DC A N1 1
ATOM 134 C C2 . DC A 1 7 ? 8.457 85.735 1.634 1.00 15.40 ? 7 DC A C2 1
ATOM 135 O O2 . DC A 1 7 ? 8.592 86.602 2.523 1.00 16.60 ? 7 DC A O2 1
ATOM 136 N N3 . DC A 1 7 ? 8.746 84.437 1.863 1.00 15.93 ? 7 DC A N3 1
ATOM 137 C C4 . DC A 1 7 ? 8.524 83.523 0.914 1.00 15.53 ? 7 DC A C4 1
ATOM 138 N N4 . DC A 1 7 ? 8.917 82.274 1.132 1.00 16.43 ? 7 DC A N4 1
ATOM 139 C C5 . DC A 1 7 ? 7.907 83.857 -0.323 1.00 16.74 ? 7 DC A C5 1
ATOM 140 C C6 . DC A 1 7 ? 7.639 85.148 -0.548 1.00 15.74 ? 7 DC A C6 1
ATOM 141 P P . DC A 1 8 ? 8.006 89.367 -4.285 1.00 20.78 ? 8 DC A P 1
ATOM 142 O OP1 . DC A 1 8 ? 7.920 90.772 -4.868 1.00 27.04 ? 8 DC A OP1 1
ATOM 143 O OP2 . DC A 1 8 ? 7.534 88.144 -4.939 1.00 22.19 ? 8 DC A OP2 1
ATOM 144 O "O5'" . DC A 1 8 ? 9.557 89.160 -3.997 1.00 19.45 ? 8 DC A "O5'" 1
ATOM 145 C "C5'" . DC A 1 8 ? 10.281 90.232 -3.435 1.00 17.42 ? 8 DC A "C5'" 1
ATOM 146 C "C4'" . DC A 1 8 ? 11.703 89.764 -3.204 1.00 16.71 ? 8 DC A "C4'" 1
ATOM 147 O "O4'" . DC A 1 8 ? 11.677 88.773 -2.148 1.00 15.74 ? 8 DC A "O4'" 1
ATOM 148 C "C3'" . DC A 1 8 ? 12.411 89.087 -4.360 1.00 16.35 ? 8 DC A "C3'" 1
ATOM 149 O "O3'" . DC A 1 8 ? 12.998 90.155 -5.117 1.00 18.42 ? 8 DC A "O3'" 1
ATOM 150 C "C2'" . DC A 1 8 ? 13.481 88.318 -3.618 1.00 16.19 ? 8 DC A "C2'" 1
ATOM 151 C "C1'" . DC A 1 8 ? 12.811 87.924 -2.296 1.00 15.98 ? 8 DC A "C1'" 1
ATOM 152 N N1 . DC A 1 8 ? 12.361 86.519 -2.219 1.00 15.91 ? 8 DC A N1 1
ATOM 153 C C2 . DC A 1 8 ? 13.065 85.630 -1.395 1.00 15.09 ? 8 DC A C2 1
ATOM 154 O O2 . DC A 1 8 ? 14.144 86.015 -0.885 1.00 17.39 ? 8 DC A O2 1
ATOM 155 N N3 . DC A 1 8 ? 12.623 84.361 -1.278 1.00 14.62 ? 8 DC A N3 1
ATOM 156 C C4 . DC A 1 8 ? 11.489 83.997 -1.874 1.00 14.03 ? 8 DC A C4 1
ATOM 157 N N4 . DC A 1 8 ? 11.040 82.766 -1.676 1.00 15.15 ? 8 DC A N4 1
ATOM 158 C C5 . DC A 1 8 ? 10.782 84.866 -2.738 1.00 14.97 ? 8 DC A C5 1
ATOM 159 C C6 . DC A 1 8 ? 11.237 86.109 -2.868 1.00 14.99 ? 8 DC A C6 1
ATOM 160 P P . DG A 1 9 ? 13.351 89.929 -6.681 1.00 19.14 ? 9 DG A P 1
ATOM 161 O OP1 . DG A 1 9 ? 13.458 91.345 -7.265 1.00 22.07 ? 9 DG A OP1 1
ATOM 162 O OP2 . DG A 1 9 ? 12.440 88.949 -7.266 1.00 19.27 ? 9 DG A OP2 1
ATOM 163 O "O5'" . DG A 1 9 ? 14.848 89.333 -6.631 1.00 17.97 ? 9 DG A "O5'" 1
ATOM 164 C "C5'" . DG A 1 9 ? 15.927 90.092 -6.088 1.00 18.30 ? 9 DG A "C5'" 1
ATOM 165 C "C4'" . DG A 1 9 ? 17.128 89.184 -5.945 1.00 19.04 ? 9 DG A "C4'" 1
ATOM 166 O "O4'" . DG A 1 9 ? 16.780 88.267 -4.896 1.00 19.27 ? 9 DG A "O4'" 1
ATOM 167 C "C3'" . DG A 1 9 ? 17.384 88.315 -7.160 1.00 20.79 ? 9 DG A "C3'" 1
ATOM 168 O "O3'" . DG A 1 9 ? 18.506 88.918 -7.796 1.00 25.01 ? 9 DG A "O3'" 1
ATOM 169 C "C2'" . DG A 1 9 ? 17.870 87.023 -6.589 1.00 22.95 ? 9 DG A "C2'" 1
ATOM 170 C "C1'" . DG A 1 9 ? 17.145 86.945 -5.277 1.00 18.94 ? 9 DG A "C1'" 1
ATOM 171 N N9 . DG A 1 9 ? 15.960 86.084 -5.241 1.00 19.01 ? 9 DG A N9 1
ATOM 172 C C8 . DG A 1 9 ? 14.838 86.058 -6.041 1.00 16.82 ? 9 DG A C8 1
ATOM 173 N N7 . DG A 1 9 ? 13.985 85.139 -5.692 1.00 16.33 ? 9 DG A N7 1
ATOM 174 C C5 . DG A 1 9 ? 14.609 84.471 -4.648 1.00 16.73 ? 9 DG A C5 1
ATOM 175 C C6 . DG A 1 9 ? 14.244 83.286 -3.964 1.00 16.59 ? 9 DG A C6 1
ATOM 176 O O6 . DG A 1 9 ? 13.236 82.612 -4.087 1.00 16.95 ? 9 DG A O6 1
ATOM 177 N N1 . DG A 1 9 ? 15.183 82.937 -3.006 1.00 14.33 ? 9 DG A N1 1
ATOM 178 C C2 . DG A 1 9 ? 16.370 83.587 -2.797 1.00 14.49 ? 9 DG A C2 1
ATOM 179 N N2 . DG A 1 9 ? 17.163 83.091 -1.847 1.00 16.77 ? 9 DG A N2 1
ATOM 180 N N3 . DG A 1 9 ? 16.734 84.678 -3.438 1.00 15.96 ? 9 DG A N3 1
ATOM 181 C C4 . DG A 1 9 ? 15.832 85.036 -4.370 1.00 16.25 ? 9 DG A C4 1
ATOM 182 P P . DA A 1 10 ? 19.018 88.383 -9.280 1.00 27.73 ? 10 DA A P 1
ATOM 183 O OP1 . DA A 1 10 ? 19.749 89.524 -9.885 1.00 33.42 ? 10 DA A OP1 1
ATOM 184 O OP2 . DA A 1 10 ? 17.899 87.658 -10.012 1.00 23.75 ? 10 DA A OP2 1
ATOM 185 O "O5'" . DA A 1 10 ? 20.095 87.274 -8.879 1.00 25.24 ? 10 DA A "O5'" 1
ATOM 186 C "C5'" . DA A 1 10 ? 21.253 87.584 -8.112 1.00 22.45 ? 10 DA A "C5'" 1
ATOM 187 C "C4'" . DA A 1 10 ? 22.020 86.300 -7.885 1.00 21.59 ? 10 DA A "C4'" 1
ATOM 188 O "O4'" . DA A 1 10 ? 21.119 85.332 -7.302 1.00 22.73 ? 10 DA A "O4'" 1
ATOM 189 C "C3'" . DA A 1 10 ? 22.552 85.588 -9.120 1.00 21.86 ? 10 DA A "C3'" 1
ATOM 190 O "O3'" . DA A 1 10 ? 23.791 86.057 -9.585 1.00 23.35 ? 10 DA A "O3'" 1
ATOM 191 C "C2'" . DA A 1 10 ? 22.689 84.173 -8.649 1.00 21.78 ? 10 DA A "C2'" 1
ATOM 192 C "C1'" . DA A 1 10 ? 21.477 84.032 -7.779 1.00 22.67 ? 10 DA A "C1'" 1
ATOM 193 N N9 . DA A 1 10 ? 20.353 83.478 -8.495 1.00 21.52 ? 10 DA A N9 1
ATOM 194 C C8 . DA A 1 10 ? 19.658 84.051 -9.528 1.00 23.43 ? 10 DA A C8 1
ATOM 195 N N7 . DA A 1 10 ? 18.670 83.318 -9.959 1.00 23.25 ? 10 DA A N7 1
ATOM 196 C C5 . DA A 1 10 ? 18.779 82.148 -9.227 1.00 20.84 ? 10 DA A C5 1
ATOM 197 C C6 . DA A 1 10 ? 18.086 80.939 -9.290 1.00 19.55 ? 10 DA A C6 1
ATOM 198 N N6 . DA A 1 10 ? 17.035 80.741 -10.081 1.00 23.37 ? 10 DA A N6 1
ATOM 199 N N1 . DA A 1 10 ? 18.390 79.999 -8.381 1.00 20.10 ? 10 DA A N1 1
ATOM 200 C C2 . DA A 1 10 ? 19.432 80.213 -7.562 1.00 18.96 ? 10 DA A C2 1
ATOM 201 N N3 . DA A 1 10 ? 20.203 81.286 -7.455 1.00 21.37 ? 10 DA A N3 1
ATOM 202 C C4 . DA A 1 10 ? 19.825 82.228 -8.334 1.00 20.21 ? 10 DA A C4 1
HETATM 203 RU RU . RKL B 2 . ? -1.410 75.013 8.874 1.00 14.98 ? 101 RKL A RU 1
HETATM 204 C C1 . RKL B 2 . ? -3.697 74.486 10.477 1.00 15.04 ? 101 RKL A C1 1
HETATM 205 N N1 . RKL B 2 . ? -1.651 73.358 9.960 1.00 16.37 ? 101 RKL A N1 1
HETATM 206 C C2 . RKL B 2 . ? -4.020 76.503 9.344 1.00 14.62 ? 101 RKL A C2 1
HETATM 207 N N2 . RKL B 2 . ? -3.331 75.378 9.508 1.00 15.40 ? 101 RKL A N2 1
HETATM 208 C C3 . RKL B 2 . ? -5.233 76.657 10.053 1.00 17.67 ? 101 RKL A C3 1
HETATM 209 N N3 . RKL B 2 . ? -6.387 73.777 12.847 1.00 21.03 ? 101 RKL A N3 1
HETATM 210 C C4 . RKL B 2 . ? -5.637 75.715 10.968 1.00 16.84 ? 101 RKL A C4 1
HETATM 211 N N4 . RKL B 2 . ? -4.818 71.573 13.212 1.00 18.26 ? 101 RKL A N4 1
HETATM 212 C C5 . RKL B 2 . ? -4.887 74.574 11.213 1.00 15.99 ? 101 RKL A C5 1
HETATM 213 N N5 . RKL B 2 . ? -0.578 75.800 10.554 1.00 15.08 ? 101 RKL A N5 1
HETATM 214 C C6 . RKL B 2 . ? -5.272 73.614 12.135 1.00 16.68 ? 101 RKL A C6 1
HETATM 215 N N6 . RKL B 2 . ? 1.061 76.796 12.654 1.00 15.36 ? 101 RKL A N6 1
HETATM 216 C C7 . RKL B 2 . ? -4.500 72.523 12.316 1.00 17.21 ? 101 RKL A C7 1
HETATM 217 N N7 . RKL B 2 . ? 3.348 74.280 8.384 1.00 15.52 ? 101 RKL A N7 1
HETATM 218 C C8 . RKL B 2 . ? -3.295 72.348 11.573 1.00 14.82 ? 101 RKL A C8 1
HETATM 219 N N8 . RKL B 2 . ? 0.524 74.622 8.370 1.00 14.43 ? 101 RKL A N8 1
HETATM 220 C C9 . RKL B 2 . ? -2.485 71.238 11.674 1.00 15.91 ? 101 RKL A C9 1
HETATM 221 N N9 . RKL B 2 . ? -2.137 74.241 7.151 1.00 15.41 ? 101 RKL A N9 1
HETATM 222 C C10 . RKL B 2 . ? -2.880 73.380 10.664 1.00 14.81 ? 101 RKL A C10 1
HETATM 223 N N10 . RKL B 2 . ? -2.775 73.434 4.538 1.00 18.41 ? 101 RKL A N10 1
HETATM 224 C C11 . RKL B 2 . ? -1.290 71.165 10.956 1.00 15.51 ? 101 RKL A C11 1
HETATM 225 N N11 . RKL B 2 . ? -1.394 78.640 5.717 1.00 16.82 ? 101 RKL A N11 1
HETATM 226 C C12 . RKL B 2 . ? -0.949 72.221 10.039 1.00 15.25 ? 101 RKL A C12 1
HETATM 227 N N12 . RKL B 2 . ? -1.254 76.704 7.692 1.00 15.13 ? 101 RKL A N12 1
HETATM 228 C C13 . RKL B 2 . ? -5.916 71.775 13.888 1.00 20.09 ? 101 RKL A C13 1
HETATM 229 C C14 . RKL B 2 . ? -6.223 70.774 14.827 1.00 22.12 ? 101 RKL A C14 1
HETATM 230 C C15 . RKL B 2 . ? -6.710 72.843 13.712 1.00 19.97 ? 101 RKL A C15 1
HETATM 231 C C16 . RKL B 2 . ? -7.900 73.064 14.438 1.00 21.40 ? 101 RKL A C16 1
HETATM 232 C C17 . RKL B 2 . ? -8.209 72.082 15.371 1.00 21.87 ? 101 RKL A C17 1
HETATM 233 C C18 . RKL B 2 . ? -7.405 70.975 15.581 1.00 22.84 ? 101 RKL A C18 1
HETATM 234 C C19 . RKL B 2 . ? 0.783 75.707 10.546 1.00 12.81 ? 101 RKL A C19 1
HETATM 235 C C20 . RKL B 2 . ? -1.069 76.511 11.600 1.00 15.79 ? 101 RKL A C20 1
HETATM 236 C C21 . RKL B 2 . ? -0.282 76.976 12.627 1.00 15.24 ? 101 RKL A C21 1
HETATM 237 C C22 . RKL B 2 . ? 1.634 76.167 11.627 1.00 13.58 ? 101 RKL A C22 1
HETATM 238 C C23 . RKL B 2 . ? 3.014 76.037 11.547 1.00 13.85 ? 101 RKL A C23 1
HETATM 239 C C24 . RKL B 2 . ? 3.514 75.408 10.478 1.00 15.16 ? 101 RKL A C24 1
HETATM 240 C C25 . RKL B 2 . ? 2.738 74.899 9.418 1.00 15.05 ? 101 RKL A C25 1
HETATM 241 C C26 . RKL B 2 . ? 1.345 75.013 9.419 1.00 15.24 ? 101 RKL A C26 1
HETATM 242 C C27 . RKL B 2 . ? 2.585 73.838 7.421 1.00 16.11 ? 101 RKL A C27 1
HETATM 243 C C28 . RKL B 2 . ? 1.217 73.946 7.467 1.00 17.62 ? 101 RKL A C28 1
HETATM 244 C C29 . RKL B 2 . ? -2.029 75.117 6.128 1.00 16.10 ? 101 RKL A C29 1
HETATM 245 C C30 . RKL B 2 . ? -2.401 72.983 6.795 1.00 16.98 ? 101 RKL A C30 1
HETATM 246 C C31 . RKL B 2 . ? -2.750 72.608 5.483 1.00 18.50 ? 101 RKL A C31 1
HETATM 247 C C32 . RKL B 2 . ? -2.400 74.728 4.783 1.00 15.77 ? 101 RKL A C32 1
HETATM 248 C C33 . RKL B 2 . ? -2.390 75.731 3.786 1.00 15.36 ? 101 RKL A C33 1
HETATM 249 C C34 . RKL B 2 . ? -2.050 77.007 4.077 1.00 14.95 ? 101 RKL A C34 1
HETATM 250 C C35 . RKL B 2 . ? -1.686 77.376 5.397 1.00 15.61 ? 101 RKL A C35 1
HETATM 251 C C36 . RKL B 2 . ? -1.696 76.437 6.433 1.00 15.11 ? 101 RKL A C36 1
HETATM 252 C C37 . RKL B 2 . ? -1.085 78.898 6.975 1.00 16.53 ? 101 RKL A C37 1
HETATM 253 C C38 . RKL B 2 . ? -1.062 77.923 7.996 1.00 16.27 ? 101 RKL A C38 1
HETATM 254 BA BA . BA C 3 . ? 9.297 77.534 9.609 1.00 15.69 ? 102 BA A BA 1
HETATM 255 CL CL . CL D 4 . ? 9.211 79.089 6.872 0.50 17.12 ? 103 CL A CL 1
HETATM 256 O O . HOH E 5 . ? 1.380 76.975 5.634 1.00 17.04 ? 201 HOH A O 1
HETATM 257 O O . HOH E 5 . ? 0.859 74.492 4.184 1.00 23.86 ? 202 HOH A O 1
HETATM 258 O O . HOH E 5 . ? 11.484 85.307 -6.851 1.00 35.87 ? 203 HOH A O 1
HETATM 259 O O . HOH E 5 . ? 6.315 79.264 1.309 1.00 21.69 ? 204 HOH A O 1
HETATM 260 O O . HOH E 5 . ? 10.708 79.219 1.299 1.00 16.75 ? 205 HOH A O 1
HETATM 261 O O . HOH E 5 . ? 11.261 75.879 10.708 1.00 22.39 ? 206 HOH A O 1
HETATM 262 O O . HOH E 5 . ? 8.156 79.629 3.468 1.00 17.17 ? 207 HOH A O 1
HETATM 263 O O . HOH E 5 . ? 22.536 81.172 -5.818 1.00 20.47 ? 208 HOH A O 1
HETATM 264 O O . HOH E 5 . ? 19.553 84.758 -0.703 1.00 24.35 ? 209 HOH A O 1
HETATM 265 O O . HOH E 5 . ? 10.559 75.757 7.857 1.00 21.18 ? 210 HOH A O 1
HETATM 266 O O . HOH E 5 . ? 13.532 69.077 8.300 1.00 32.73 ? 211 HOH A O 1
HETATM 267 O O . HOH E 5 . ? 7.168 85.003 -4.034 1.00 41.21 ? 212 HOH A O 1
HETATM 268 O O . HOH E 5 . ? 2.208 70.044 12.149 1.00 30.90 ? 213 HOH A O 1
HETATM 269 O O . HOH E 5 . ? 10.543 67.907 7.021 1.00 33.68 ? 214 HOH A O 1
HETATM 270 O O . HOH E 5 . ? 14.665 68.316 10.805 1.00 30.70 ? 215 HOH A O 1
HETATM 271 O O . HOH E 5 . ? 9.268 76.699 3.684 1.00 28.80 ? 216 HOH A O 1
HETATM 272 O O . HOH E 5 . ? 13.400 87.307 -9.235 1.00 35.99 ? 217 HOH A O 1
HETATM 273 O O . HOH E 5 . ? 9.715 78.143 17.112 1.00 37.29 ? 218 HOH A O 1
HETATM 274 O O . HOH E 5 . ? 11.164 82.599 -5.802 1.00 36.16 ? 219 HOH A O 1
HETATM 275 O O . HOH E 5 . ? 12.751 76.242 13.374 1.00 42.58 ? 220 HOH A O 1
HETATM 276 O O . HOH E 5 . ? 8.508 80.084 -0.634 1.00 35.68 ? 221 HOH A O 1
HETATM 277 O O . HOH E 5 . ? 22.101 83.892 -0.097 1.00 35.12 ? 222 HOH A O 1
HETATM 278 O O . HOH E 5 . ? 6.342 79.711 17.160 1.00 29.97 ? 223 HOH A O 1
HETATM 279 O O . HOH E 5 . ? -1.256 79.798 10.615 1.00 38.32 ? 224 HOH A O 1
HETATM 280 O O . HOH E 5 . ? 23.713 82.717 2.195 1.00 36.57 ? 225 HOH A O 1
HETATM 281 O O . HOH E 5 . ? 6.027 68.617 8.625 1.00 33.30 ? 226 HOH A O 1
HETATM 282 O O . HOH E 5 . ? 12.427 91.415 -10.075 1.00 40.92 ? 227 HOH A O 1
HETATM 283 O O . HOH E 5 . ? 14.602 75.968 9.373 1.00 38.02 ? 228 HOH A O 1
HETATM 284 O O . HOH E 5 . ? 11.855 93.437 -6.048 1.00 39.21 ? 229 HOH A O 1
HETATM 285 O O . HOH E 5 . ? 17.728 93.186 -8.224 1.00 40.64 ? 230 HOH A O 1
HETATM 286 O O . HOH E 5 . ? 3.898 88.014 2.453 1.00 39.65 ? 231 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT DT A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 DG 3 3 3 DG DG A . n
A 1 4 DG 4 4 4 DG DG A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DG 6 6 6 DG DG A . n
A 1 7 DC 7 7 7 DC DC A . n
A 1 8 DC 8 8 8 DC DC A . n
A 1 9 DG 9 9 9 DG DG A . n
A 1 10 DA 10 10 10 DA DA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RKL 1 101 11 RKL RKL A .
C 3 BA 1 102 12 BA BA A .
D 4 CL 1 103 13 CL CL A .
E 5 HOH 1 201 1 HOH HOH A .
E 5 HOH 2 202 2 HOH HOH A .
E 5 HOH 3 203 3 HOH HOH A .
E 5 HOH 4 204 4 HOH HOH A .
E 5 HOH 5 205 5 HOH HOH A .
E 5 HOH 6 206 6 HOH HOH A .
E 5 HOH 7 207 7 HOH HOH A .
E 5 HOH 8 208 8 HOH HOH A .
E 5 HOH 9 209 9 HOH HOH A .
E 5 HOH 10 210 10 HOH HOH A .
E 5 HOH 11 211 11 HOH HOH A .
E 5 HOH 12 212 12 HOH HOH A .
E 5 HOH 13 213 13 HOH HOH A .
E 5 HOH 14 214 14 HOH HOH A .
E 5 HOH 15 215 15 HOH HOH A .
E 5 HOH 16 216 16 HOH HOH A .
E 5 HOH 17 217 17 HOH HOH A .
E 5 HOH 18 218 19 HOH HOH A .
E 5 HOH 19 219 20 HOH HOH A .
E 5 HOH 20 220 22 HOH HOH A .
E 5 HOH 21 221 23 HOH HOH A .
E 5 HOH 22 222 26 HOH HOH A .
E 5 HOH 23 223 29 HOH HOH A .
E 5 HOH 24 224 30 HOH HOH A .
E 5 HOH 25 225 31 HOH HOH A .
E 5 HOH 26 226 32 HOH HOH A .
E 5 HOH 27 227 33 HOH HOH A .
E 5 HOH 28 228 35 HOH HOH A .
E 5 HOH 29 229 36 HOH HOH A .
E 5 HOH 30 230 37 HOH HOH A .
E 5 HOH 31 231 38 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1970 ?
1 MORE -55 ?
1 'SSA (A^2)' 4750 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 88.3000000000 -1.0000000000
0.0000000000 0.0000000000 88.3000000000 0.0000000000 0.0000000000 -1.0000000000 13.7450000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id CL
_pdbx_struct_special_symmetry.auth_seq_id 103
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id D
_pdbx_struct_special_symmetry.label_comp_id CL
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 206 ? 1_555 132.2 ?
2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 210 ? 1_555 131.0 ?
3 O ? E HOH . ? A HOH 206 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 210 ? 1_555 63.4 ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2014-09-24
2 'Structure model' 1 1 2014-12-03
3 'Structure model' 1 2 2015-01-07
4 'Structure model' 1 3 2023-09-20
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' pdbx_initial_refinement_model
5 4 'Structure model' pdbx_struct_conn_angle
6 4 'Structure model' struct_conn
7 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
15 4 'Structure model' '_pdbx_struct_conn_angle.value'
16 4 'Structure model' '_struct_conn.pdbx_dist_value'
17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'
23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'
26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'
27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'
28 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
29 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
30 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
GDA 'data collection' . ? 1
PHASER phasing . ? 2
REFMAC refinement 5.7.0032 ? 3
XDS 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 99.43 105.70 -6.27 0.90 N
2 1 "O4'" A DC 7 ? ? "C4'" A DC 7 ? ? "C3'" A DC 7 ? ? 101.89 104.50 -2.61 0.40 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BA BA BA N N 1
CL CL CL N N 2
DA OP3 O N N 3
DA P P N N 4
DA OP1 O N N 5
DA OP2 O N N 6
DA "O5'" O N N 7
DA "C5'" C N N 8
DA "C4'" C N R 9
DA "O4'" O N N 10
DA "C3'" C N S 11
DA "O3'" O N N 12
DA "C2'" C N N 13
DA "C1'" C N R 14
DA N9 N Y N 15
DA C8 C Y N 16
DA N7 N Y N 17
DA C5 C Y N 18
DA C6 C Y N 19
DA N6 N N N 20
DA N1 N Y N 21
DA C2 C Y N 22
DA N3 N Y N 23
DA C4 C Y N 24
DA HOP3 H N N 25
DA HOP2 H N N 26
DA "H5'" H N N 27
DA "H5''" H N N 28
DA "H4'" H N N 29
DA "H3'" H N N 30
DA "HO3'" H N N 31
DA "H2'" H N N 32
DA "H2''" H N N 33
DA "H1'" H N N 34
DA H8 H N N 35
DA H61 H N N 36
DA H62 H N N 37
DA H2 H N N 38
DC OP3 O N N 39
DC P P N N 40
DC OP1 O N N 41
DC OP2 O N N 42
DC "O5'" O N N 43
DC "C5'" C N N 44
DC "C4'" C N R 45
DC "O4'" O N N 46
DC "C3'" C N S 47
DC "O3'" O N N 48
DC "C2'" C N N 49
DC "C1'" C N R 50
DC N1 N N N 51
DC C2 C N N 52
DC O2 O N N 53
DC N3 N N N 54
DC C4 C N N 55
DC N4 N N N 56
DC C5 C N N 57
DC C6 C N N 58
DC HOP3 H N N 59
DC HOP2 H N N 60
DC "H5'" H N N 61
DC "H5''" H N N 62
DC "H4'" H N N 63
DC "H3'" H N N 64
DC "HO3'" H N N 65
DC "H2'" H N N 66
DC "H2''" H N N 67
DC "H1'" H N N 68
DC H41 H N N 69
DC H42 H N N 70
DC H5 H N N 71
DC H6 H N N 72
DG OP3 O N N 73
DG P P N N 74
DG OP1 O N N 75
DG OP2 O N N 76
DG "O5'" O N N 77
DG "C5'" C N N 78
DG "C4'" C N R 79
DG "O4'" O N N 80
DG "C3'" C N S 81
DG "O3'" O N N 82
DG "C2'" C N N 83
DG "C1'" C N R 84
DG N9 N Y N 85
DG C8 C Y N 86
DG N7 N Y N 87
DG C5 C Y N 88
DG C6 C N N 89
DG O6 O N N 90
DG N1 N N N 91
DG C2 C N N 92
DG N2 N N N 93
DG N3 N N N 94
DG C4 C Y N 95
DG HOP3 H N N 96
DG HOP2 H N N 97
DG "H5'" H N N 98
DG "H5''" H N N 99
DG "H4'" H N N 100
DG "H3'" H N N 101
DG "HO3'" H N N 102
DG "H2'" H N N 103
DG "H2''" H N N 104
DG "H1'" H N N 105
DG H8 H N N 106
DG H1 H N N 107
DG H21 H N N 108
DG H22 H N N 109
DT OP3 O N N 110
DT P P N N 111
DT OP1 O N N 112
DT OP2 O N N 113
DT "O5'" O N N 114
DT "C5'" C N N 115
DT "C4'" C N R 116
DT "O4'" O N N 117
DT "C3'" C N S 118
DT "O3'" O N N 119
DT "C2'" C N N 120
DT "C1'" C N R 121
DT N1 N N N 122
DT C2 C N N 123
DT O2 O N N 124
DT N3 N N N 125
DT C4 C N N 126
DT O4 O N N 127
DT C5 C N N 128
DT C7 C N N 129
DT C6 C N N 130
DT HOP3 H N N 131
DT HOP2 H N N 132
DT "H5'" H N N 133
DT "H5''" H N N 134
DT "H4'" H N N 135
DT "H3'" H N N 136
DT "HO3'" H N N 137
DT "H2'" H N N 138
DT "H2''" H N N 139
DT "H1'" H N N 140
DT H3 H N N 141
DT H71 H N N 142
DT H72 H N N 143
DT H73 H N N 144
DT H6 H N N 145
HOH O O N N 146
HOH H1 H N N 147
HOH H2 H N N 148
RKL RU RU N N 149
RKL C1 C Y N 150
RKL N1 N Y N 151
RKL C2 C Y N 152
RKL N2 N Y N 153
RKL C3 C Y N 154
RKL N3 N Y N 155
RKL C4 C Y N 156
RKL N4 N Y N 157
RKL C5 C Y N 158
RKL N5 N Y N 159
RKL C6 C Y N 160
RKL N6 N Y N 161
RKL C7 C Y N 162
RKL N7 N Y N 163
RKL C8 C Y N 164
RKL N8 N Y N 165
RKL C9 C Y N 166
RKL N9 N Y N 167
RKL C10 C Y N 168
RKL N10 N Y N 169
RKL C11 C Y N 170
RKL N11 N Y N 171
RKL C12 C Y N 172
RKL N12 N Y N 173
RKL C13 C Y N 174
RKL C14 C Y N 175
RKL C15 C Y N 176
RKL C16 C Y N 177
RKL C17 C Y N 178
RKL C18 C Y N 179
RKL C19 C Y N 180
RKL C20 C Y N 181
RKL C21 C Y N 182
RKL C22 C Y N 183
RKL C23 C Y N 184
RKL C24 C Y N 185
RKL C25 C Y N 186
RKL C26 C Y N 187
RKL C27 C Y N 188
RKL C28 C Y N 189
RKL C29 C Y N 190
RKL C30 C Y N 191
RKL C31 C Y N 192
RKL C32 C Y N 193
RKL C33 C Y N 194
RKL C34 C Y N 195
RKL C35 C Y N 196
RKL C36 C Y N 197
RKL C37 C Y N 198
RKL C38 C Y N 199
RKL H2 H N N 200
RKL H3 H N N 201
RKL H4 H N N 202
RKL H9 H N N 203
RKL H11 H N N 204
RKL H12 H N N 205
RKL H14 H N N 206
RKL H16 H N N 207
RKL H17 H N N 208
RKL H18 H N N 209
RKL H20 H N N 210
RKL H21 H N N 211
RKL H23 H N N 212
RKL H24 H N N 213
RKL H27 H N N 214
RKL H28 H N N 215
RKL H30 H N N 216
RKL H31 H N N 217
RKL H33 H N N 218
RKL H34 H N N 219
RKL H37 H N N 220
RKL H38 H N N 221
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
RKL RU N1 sing N N 152
RKL RU N2 sing N N 153
RKL RU N5 sing N N 154
RKL RU N8 sing N N 155
RKL RU N9 sing N N 156
RKL RU N12 sing N N 157
RKL C1 N2 doub Y N 158
RKL C1 C5 sing Y N 159
RKL C1 C10 sing Y N 160
RKL N1 C10 doub Y N 161
RKL N1 C12 sing Y N 162
RKL C2 N2 sing Y N 163
RKL C2 C3 doub Y N 164
RKL C2 H2 sing N N 165
RKL C3 C4 sing Y N 166
RKL C3 H3 sing N N 167
RKL N3 C6 doub Y N 168
RKL N3 C15 sing Y N 169
RKL C4 C5 doub Y N 170
RKL C4 H4 sing N N 171
RKL N4 C7 doub Y N 172
RKL N4 C13 sing Y N 173
RKL C5 C6 sing Y N 174
RKL N5 C19 doub Y N 175
RKL N5 C20 sing Y N 176
RKL C6 C7 sing Y N 177
RKL N6 C21 sing Y N 178
RKL N6 C22 doub Y N 179
RKL C7 C8 sing Y N 180
RKL N7 C25 doub Y N 181
RKL N7 C27 sing Y N 182
RKL C8 C9 doub Y N 183
RKL C8 C10 sing Y N 184
RKL N8 C26 doub Y N 185
RKL N8 C28 sing Y N 186
RKL C9 C11 sing Y N 187
RKL C9 H9 sing N N 188
RKL N9 C29 doub Y N 189
RKL N9 C30 sing Y N 190
RKL N10 C31 sing Y N 191
RKL N10 C32 doub Y N 192
RKL C11 C12 doub Y N 193
RKL C11 H11 sing N N 194
RKL N11 C35 doub Y N 195
RKL N11 C37 sing Y N 196
RKL C12 H12 sing N N 197
RKL N12 C36 doub Y N 198
RKL N12 C38 sing Y N 199
RKL C13 C14 sing Y N 200
RKL C13 C15 doub Y N 201
RKL C14 C18 doub Y N 202
RKL C14 H14 sing N N 203
RKL C15 C16 sing Y N 204
RKL C16 C17 doub Y N 205
RKL C16 H16 sing N N 206
RKL C17 C18 sing Y N 207
RKL C17 H17 sing N N 208
RKL C18 H18 sing N N 209
RKL C19 C22 sing Y N 210
RKL C19 C26 sing Y N 211
RKL C20 C21 doub Y N 212
RKL C20 H20 sing N N 213
RKL C21 H21 sing N N 214
RKL C22 C23 sing Y N 215
RKL C23 C24 doub Y N 216
RKL C23 H23 sing N N 217
RKL C24 C25 sing Y N 218
RKL C24 H24 sing N N 219
RKL C25 C26 sing Y N 220
RKL C27 C28 doub Y N 221
RKL C27 H27 sing N N 222
RKL C28 H28 sing N N 223
RKL C29 C32 sing Y N 224
RKL C29 C36 sing Y N 225
RKL C30 C31 doub Y N 226
RKL C30 H30 sing N N 227
RKL C31 H31 sing N N 228
RKL C32 C33 sing Y N 229
RKL C33 C34 doub Y N 230
RKL C33 H33 sing N N 231
RKL C34 C35 sing Y N 232
RKL C34 H34 sing N N 233
RKL C35 C36 sing Y N 234
RKL C37 C38 doub Y N 235
RKL C37 H37 sing N N 236
RKL C38 H38 sing N N 237
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
4LTK 'double helix'
4LTK 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 2 1_555 A DG 9 8_775 0.171 -0.120 -0.009 -7.874 3.212 -0.559 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1
1 A DG 3 1_555 A DC 8 8_775 -0.282 -0.081 0.261 23.015 -9.259 -0.674 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1
1 A DG 4 1_555 A DC 7 8_775 -0.230 -0.187 -0.227 -5.256 6.430 -1.918 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1
1 A DC 5 1_555 A DG 6 8_775 0.078 -0.095 -0.076 9.979 -1.141 -1.902 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1
1 A DG 6 1_555 A DC 5 8_775 -0.078 -0.095 -0.076 -9.979 -1.141 -1.902 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1
1 A DC 7 1_555 A DG 4 8_775 0.230 -0.187 -0.227 5.256 6.430 -1.918 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1
1 A DC 8 1_555 A DG 3 8_775 0.282 -0.081 0.261 -23.015 -9.259 -0.674 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1
1 A DG 9 1_555 A DC 2 8_775 -0.171 -0.120 -0.009 7.874 3.212 -0.559 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 2 1_555 A DG 9 8_775 A DG 3 1_555 A DC 8 8_775 -0.121 1.541 2.777 -0.714 5.425 22.054 2.139 0.074 3.065 13.907 1.831
22.714 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ?
1 A DG 3 1_555 A DC 8 8_775 A DG 4 1_555 A DC 7 8_775 -0.437 0.594 5.009 -1.862 48.376 20.406 -4.940 0.280 2.572 68.444 2.634
52.297 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ?
1 A DG 4 1_555 A DC 7 8_775 A DC 5 1_555 A DG 6 8_775 -1.110 0.031 2.967 -2.215 2.290 35.170 -0.260 1.529 3.025 3.780 3.657
35.309 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ?
1 A DC 5 1_555 A DG 6 8_775 A DG 6 1_555 A DC 5 8_775 0.000 1.664 4.715 0.000 50.868 16.181 -4.413 0.000 3.061 73.514 0.000
53.216 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ?
1 A DG 6 1_555 A DC 5 8_775 A DC 7 1_555 A DG 4 8_775 1.110 0.031 2.967 2.215 2.290 35.170 -0.260 -1.529 3.025 3.780 -3.657
35.309 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ?
1 A DC 7 1_555 A DG 4 8_775 A DC 8 1_555 A DG 3 8_775 0.437 0.594 5.009 1.862 48.376 20.406 -4.940 -0.280 2.572 68.444 -2.634
52.297 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ?
1 A DC 8 1_555 A DG 3 8_775 A DG 9 1_555 A DC 2 8_775 0.121 1.541 2.777 0.714 5.425 22.054 2.139 -0.074 3.065 13.907 -1.831
22.714 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'Ru(tap)2(dppz) complex' RKL
3 'BARIUM ION' BA
4 'CHLORIDE ION' CL
5 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3S80
_pdbx_initial_refinement_model.details 'PDB ENTRY 3S80'
#