data_4L5K
#
_entry.id 4L5K
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4L5K pdb_00004l5k 10.2210/pdb4l5k/pdb
NDB NA2546 ? ?
RCSB RCSB080208 ? ?
WWPDB D_1000080208 ? ?
#
_pdbx_database_status.entry_id 4L5K
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2013-06-11
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Ferraroni, M.' 1
'Bazzicalupi, C.' 2
'Gratteri, P.' 3
#
_citation.id primary
_citation.title 'Crystal structure of the complex of DNA hexamer d(CGATCG) with Coptisine'
_citation.journal_abbrev 'to be published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ferraroni, M.' 1 ?
primary 'Bazzicalupi, C.' 2 ?
primary 'Gratteri, P.' 3 ?
#
_cell.entry_id 4L5K
_cell.length_a 26.581
_cell.length_b 26.581
_cell.length_c 77.094
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4L5K
_symmetry.space_group_name_H-M 'P 65 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 179
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn '6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium' 320.319 1 ? ? ? ?
3 water nat water 18.015 3 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGATCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DC n
1 6 DG n
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4L5K
_struct_ref.pdbx_db_accession 4L5K
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code CGATCG
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4L5K
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4L5K
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'
331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P'
307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'
347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P'
322.208
HOH non-polymer . WATER ? 'H2 O'
18.015
KPT non-polymer . '6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium' Coptisine 'C19 H14 N O4 1'
320.319
#
_exptl.entry_id 4L5K
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.18
_exptl_crystal.density_percent_sol 43.45
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 296
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details
;10% MPD, 40 mM Na Cacodylate, 12 mM spermine tetra-HCl, 80 mM sodium chloride and 20 mM barium chloride, pH 6.0, vapor diffusion, sitting drop, temperature 296K
;
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'OXFORD ONYX CCD'
_diffrn_detector.pdbx_collection_date 2011-08-14
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.542
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type 'OXFORD DIFFRACTION ENHANCE ULTRA'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.542
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 4L5K
_reflns.observed_criterion_sigma_I -3.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 14.78
_reflns.d_resolution_high 2.7
_reflns.number_obs 558
_reflns.number_all ?
_reflns.percent_possible_obs 97.000
_reflns.pdbx_Rmerge_I_obs 0.092
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 18.990
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
#
loop_
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_ordinal
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.percent_possible_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_unique_obs
_reflns_shell.pdbx_chi_squared
1 1 2.990 3.160 87.900 0.776 ? 3.690 ? ? ? ? ? ? ?
1 2 3.160 3.370 98.500 0.154 ? 8.710 ? ? ? ? ? ? ?
1 3 3.370 3.620 100.000 0.113 ? 17.090 ? ? ? ? ? ? ?
1 4 3.620 3.940 100.000 0.141 ? 15.730 ? ? ? ? ? ? ?
1 5 3.940 4.350 100.000 0.119 ? 18.830 ? ? ? ? ? ? ?
1 6 4.350 4.940 100.000 0.068 ? 25.660 ? ? ? ? ? ? ?
1 7 4.940 5.850 100.000 0.063 ? 33.530 ? ? ? ? ? ? ?
1 8 5.850 7.570 100.000 0.055 ? 31.870 ? ? ? ? ? ? ?
1 9 7.570 ? 86.100 0.050 ? 32.030 ? ? ? ? ? ? ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 4L5K
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 558
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 14.78
_refine.ls_d_res_high 2.71
_refine.ls_percent_reflns_obs 98.59
_refine.ls_R_factor_obs 0.26710
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.26710
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min 0.500
_refine.occupancy_max 1.000
_refine.correlation_coeff_Fo_to_Fc 0.932
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 93.273
_refine.aniso_B[1][1] 2.11
_refine.aniso_B[2][2] 2.11
_refine.aniso_B[3][3] -6.85
_refine.aniso_B[1][2] 1.06
_refine.aniso_B[1][3] -0.00
_refine.aniso_B[2][3] -0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method ?
_refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT'
_refine.pdbx_starting_model 'PDB ENTRY 3FT6'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.447
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 28.317
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 24
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 147
_refine_hist.d_res_high 2.71
_refine_hist.d_res_low 14.78
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.013 0.012 ? 163 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.922 1.480 ? 249 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.107 0.200 ? 18 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.011 0.020 ? 87 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 10.411 9.365 ? 163 'X-RAY DIFFRACTION' ?
r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.706
_refine_ls_shell.d_res_low 2.774
_refine_ls_shell.number_reflns_R_work 32
_refine_ls_shell.R_factor_R_work 0.812
_refine_ls_shell.percent_reflns_obs 96.97
_refine_ls_shell.R_factor_R_free ?
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 0
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_struct.entry_id 4L5K
_struct.title 'Crystal structure of the complex of DNA hexamer d(CGATCG) with Coptisine'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4L5K
_struct_keywords.text 'DRUG-DNA COMPLEX, Isoquinoline alkaloid, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 10_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ?
hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 10_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 10_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id KPT
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 7
_struct_site.details 'BINDING SITE FOR RESIDUE KPT A 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 7 DC A 1 ? DC A 1 . ? 10_555 ?
2 AC1 7 DG A 2 ? DG A 2 . ? 10_555 ?
3 AC1 7 DG A 2 ? DG A 2 . ? 6_554 ?
4 AC1 7 DC A 5 ? DC A 5 . ? 8_555 ?
5 AC1 7 DC A 5 ? DC A 5 . ? 1_555 ?
6 AC1 7 DG A 6 ? DG A 6 . ? 1_555 ?
7 AC1 7 DG A 6 ? DG A 6 . ? 8_555 ?
#
_atom_sites.entry_id 4L5K
_atom_sites.fract_transf_matrix[1][1] 0.037621
_atom_sites.fract_transf_matrix[1][2] 0.021720
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.043441
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.012971
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
K
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? -15.326 14.798 10.431 1.00 81.98 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? -14.870 14.152 11.640 1.00 104.23 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? -13.891 15.039 12.377 1.00 121.71 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? -13.834 14.621 13.766 1.00 124.22 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? -12.449 14.983 11.858 1.00 132.66 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? -11.770 16.260 11.924 1.00 152.47 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? -11.801 13.971 12.791 1.00 133.47 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? -12.497 14.279 14.110 1.00 126.50 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? -12.543 13.181 15.098 1.00 114.78 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? -11.395 12.890 15.846 1.00 101.66 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? -10.362 13.543 15.640 1.00 93.28 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? -11.440 11.900 16.769 1.00 95.39 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? -12.574 11.225 16.969 1.00 104.28 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? -12.574 10.261 17.894 1.00 100.40 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? -13.761 11.508 16.229 1.00 115.00 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? -13.702 12.487 15.314 1.00 115.45 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? -11.395 17.129 10.574 1.00 162.11 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? -11.156 18.543 10.973 1.00 140.11 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? -12.383 16.813 9.504 1.00 166.24 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? -9.942 16.625 10.149 1.00 148.42 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? -9.422 15.332 10.528 1.00 132.03 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? -9.275 14.444 9.314 1.00 107.58 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? -9.457 13.062 9.704 1.00 92.97 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? -10.312 14.689 8.215 1.00 109.50 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? -9.748 14.218 6.986 1.00 114.11 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? -11.399 13.694 8.575 1.00 92.03 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? -10.492 12.526 8.890 1.00 87.62 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? -11.047 11.355 9.553 1.00 74.93 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? -12.354 11.096 9.890 1.00 69.40 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? -12.517 9.923 10.441 1.00 73.12 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? -11.244 9.367 10.447 1.00 74.32 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? -10.786 8.106 10.928 1.00 64.93 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? -11.436 7.200 11.449 1.00 60.09 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? -9.414 7.960 10.756 1.00 70.30 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? -8.584 8.896 10.182 1.00 79.92 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? -7.286 8.564 10.087 1.00 76.06 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? -8.999 10.067 9.721 1.00 80.09 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? -10.329 10.236 9.892 1.00 78.37 ? 2 DG A C4 1
ATOM 39 P P . DA A 1 3 ? -9.216 15.222 5.858 1.00 111.80 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? -8.632 16.423 6.517 1.00 122.95 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? -10.297 15.392 4.845 1.00 110.23 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? -8.022 14.389 5.214 1.00 108.82 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? -6.637 14.771 5.380 1.00 103.37 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? -5.745 13.564 5.202 1.00 92.90 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? -6.293 12.464 5.967 1.00 89.30 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? -5.635 13.044 3.773 1.00 98.87 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? -4.365 12.402 3.652 1.00 113.11 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? -6.743 12.004 3.708 1.00 93.15 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? -6.711 11.408 5.110 1.00 73.26 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? -7.992 10.898 5.610 1.00 53.80 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? -9.204 11.535 5.565 1.00 51.08 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? -10.187 10.840 6.082 1.00 50.13 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? -9.574 9.682 6.534 1.00 41.40 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? -10.075 8.540 7.170 1.00 38.14 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? -11.357 8.371 7.488 1.00 33.27 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? -9.203 7.552 7.463 1.00 41.87 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? -7.922 7.702 7.107 1.00 40.97 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? -7.337 8.721 6.490 1.00 43.96 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? -8.227 9.694 6.232 1.00 44.39 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? -4.079 11.393 2.445 1.00 126.69 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? -3.313 12.128 1.407 1.00 149.20 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? -5.358 10.736 2.073 1.00 136.18 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? -3.099 10.319 3.091 1.00 96.79 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? -3.578 9.412 4.082 1.00 96.24 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? -3.808 8.048 3.477 1.00 102.08 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? -5.068 7.530 3.968 1.00 96.75 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? -3.910 8.011 1.947 1.00 110.65 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? -3.607 6.686 1.484 1.00 126.75 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? -5.400 8.128 1.723 1.00 101.55 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? -5.896 7.242 2.853 1.00 95.66 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? -7.301 7.440 3.242 1.00 80.74 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? -7.924 6.404 3.895 1.00 71.72 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? -7.348 5.379 4.224 1.00 73.96 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? -9.252 6.618 4.165 1.00 68.32 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? -10.000 7.735 3.847 1.00 70.41 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? -11.185 7.789 4.162 1.00 84.50 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? -9.285 8.776 3.151 1.00 64.91 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? -10.018 10.018 2.758 1.00 61.15 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? -7.993 8.572 2.870 1.00 70.09 ? 4 DT A C6 1
ATOM 80 P P . DC A 1 5 ? -2.575 6.400 0.266 1.00 104.88 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? -1.193 6.588 0.775 1.00 99.96 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? -3.043 7.136 -0.957 1.00 83.25 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? -2.685 4.814 0.109 1.00 121.65 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? -3.177 3.946 1.173 1.00 121.21 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? -4.159 2.933 0.623 1.00 119.22 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? -5.513 3.345 0.952 1.00 101.63 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? -4.115 2.776 -0.904 1.00 123.77 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? -4.102 1.424 -1.384 1.00 133.31 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? -5.367 3.490 -1.378 1.00 107.37 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? -6.314 3.291 -0.215 1.00 95.00 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? -7.318 4.356 -0.137 1.00 81.82 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? -8.313 4.279 0.833 1.00 78.74 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? -8.300 3.325 1.624 1.00 95.29 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? -9.273 5.236 0.875 1.00 66.79 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? -9.245 6.244 0.000 1.00 64.30 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? -10.208 7.162 0.068 1.00 64.32 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? -8.247 6.337 -1.007 1.00 77.74 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? -7.326 5.367 -1.054 1.00 84.37 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? -4.272 1.114 -2.972 1.00 137.16 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? -3.372 -0.019 -3.296 1.00 146.40 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? -4.196 2.398 -3.754 1.00 90.01 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? -5.778 0.598 -3.089 1.00 149.93 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? -6.153 -0.776 -2.838 1.00 132.47 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? -7.155 -1.243 -3.871 1.00 126.64 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? -8.321 -0.383 -3.870 1.00 111.15 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? -6.639 -1.267 -5.317 1.00 129.05 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? -6.815 -2.562 -5.908 1.00 137.49 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? -7.476 -0.214 -6.030 1.00 110.41 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? -8.746 -0.224 -5.208 1.00 100.22 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? -9.583 0.972 -5.296 1.00 96.55 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? -9.247 2.194 -5.833 1.00 95.57 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? -10.230 3.054 -5.805 1.00 84.01 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? -11.285 2.352 -5.235 1.00 82.00 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? -12.615 2.759 -4.948 1.00 80.59 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? -13.152 3.852 -5.162 1.00 92.76 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? -13.349 1.733 -4.363 1.00 78.68 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? -12.871 0.477 -4.085 1.00 80.42 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? -13.745 -0.382 -3.533 1.00 70.54 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? -11.633 0.086 -4.340 1.00 86.13 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? -10.901 1.066 -4.915 1.00 86.67 ? 6 DG A C4 1
HETATM 121 C C36 . KPT B 2 . ? -13.399 6.050 -1.831 0.50 80.34 ? 101 KPT A C36 1
HETATM 122 O O4 . KPT B 2 . ? -11.951 5.945 -2.165 0.50 85.67 ? 101 KPT A O4 1
HETATM 123 O O3 . KPT B 2 . ? -13.678 4.720 -1.238 0.50 73.61 ? 101 KPT A O3 1
HETATM 124 C C18 . KPT B 2 . ? -12.532 3.970 -1.308 0.50 75.50 ? 101 KPT A C18 1
HETATM 125 C C13 . KPT B 2 . ? -12.328 2.672 -0.909 0.50 73.04 ? 101 KPT A C13 1
HETATM 126 C C14 . KPT B 2 . ? -13.373 2.011 -0.355 0.50 82.67 ? 101 KPT A C14 1
HETATM 127 C C17 . KPT B 2 . ? -11.518 4.673 -1.851 0.50 82.50 ? 101 KPT A C17 1
HETATM 128 C C16 . KPT B 2 . ? -10.268 4.073 -2.014 0.50 81.72 ? 101 KPT A C16 1
HETATM 129 C C15 . KPT B 2 . ? -10.068 2.747 -1.596 0.50 74.06 ? 101 KPT A C15 1
HETATM 130 C C12 . KPT B 2 . ? -11.115 2.031 -1.039 0.50 70.50 ? 101 KPT A C12 1
HETATM 131 C C11 . KPT B 2 . ? -10.990 0.706 -0.604 0.50 73.05 ? 101 KPT A C11 1
HETATM 132 C C10 . KPT B 2 . ? -12.109 0.028 -0.030 0.50 78.12 ? 101 KPT A C10 1
HETATM 133 N N . KPT B 2 . ? -13.282 0.745 0.038 0.50 85.51 ? 101 KPT A N 1
HETATM 134 C C9 . KPT B 2 . ? -14.494 0.145 0.582 0.50 90.04 ? 101 KPT A C9 1
HETATM 135 C C8 . KPT B 2 . ? -14.531 -1.255 -0.058 0.50 92.81 ? 101 KPT A C8 1
HETATM 136 C C6 . KPT B 2 . ? -12.084 -1.239 0.424 0.50 80.30 ? 101 KPT A C6 1
HETATM 137 C C5 . KPT B 2 . ? -13.284 -1.951 0.459 0.50 88.32 ? 101 KPT A C5 1
HETATM 138 C C4 . KPT B 2 . ? -13.360 -3.252 0.959 0.50 84.97 ? 101 KPT A C4 1
HETATM 139 C C7 . KPT B 2 . ? -10.914 -1.791 0.929 0.50 78.64 ? 101 KPT A C7 1
HETATM 140 C C3 . KPT B 2 . ? -11.012 -3.083 1.410 0.50 85.08 ? 101 KPT A C3 1
HETATM 141 C C2 . KPT B 2 . ? -12.178 -3.781 1.422 0.50 87.64 ? 101 KPT A C2 1
HETATM 142 O O2 . KPT B 2 . ? -11.970 -5.017 1.963 0.50 101.85 ? 101 KPT A O2 1
HETATM 143 O O1 . KPT B 2 . ? -10.030 -3.867 1.945 0.50 97.02 ? 101 KPT A O1 1
HETATM 144 C C1 . KPT B 2 . ? -10.665 -4.983 2.637 0.50 99.72 ? 101 KPT A C1 1
HETATM 145 O O . HOH C 3 . ? -15.586 10.568 11.020 1.00 84.78 ? 201 HOH A O 1
HETATM 146 O O . HOH C 3 . ? -15.761 17.065 5.798 1.00 56.54 ? 202 HOH A O 1
HETATM 147 O O . HOH C 3 . ? -11.903 22.342 5.447 0.50 24.81 ? 203 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC DC A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DT 4 4 4 DT DT A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DG 6 6 6 DG DG A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 KPT 1 101 1 KPT KPT A .
C 3 HOH 1 201 1 HOH HOH A .
C 3 HOH 2 202 2 HOH HOH A .
C 3 HOH 3 203 3 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 570 ?
1 MORE -11 ?
1 'SSA (A^2)' 2810 ?
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038
-0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 12.8490000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id KPT
_pdbx_struct_special_symmetry.auth_seq_id 101
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id B
_pdbx_struct_special_symmetry.label_comp_id KPT
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2014-07-02
2 'Structure model' 1 1 2023-09-20
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
4 2 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
4 2 'Structure model' pdbx_initial_refinement_model
5 2 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
3 2 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 2 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 2 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_phasing_MR.entry_id 4L5K
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details ?
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 3.500
_pdbx_phasing_MR.d_res_low_rotation 14.690
_pdbx_phasing_MR.d_res_high_translation 3.500
_pdbx_phasing_MR.d_res_low_translation 14.690
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling'
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ?
2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing
http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ?
3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
5 XDS . ? ? ? ? 'data reduction' ? ? ?
6 XDS . ? ? ? ? 'data scaling' ? ? ?
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'"
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 DG
_pdbx_validate_rmsd_angle.auth_seq_id_1 2
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'"
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 DG
_pdbx_validate_rmsd_angle.auth_seq_id_2 2
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'"
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 DG
_pdbx_validate_rmsd_angle.auth_seq_id_3 2
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 97.25
_pdbx_validate_rmsd_angle.angle_target_value 102.40
_pdbx_validate_rmsd_angle.angle_deviation -5.15
_pdbx_validate_rmsd_angle.angle_standard_deviation 0.80
_pdbx_validate_rmsd_angle.linker_flag N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
KPT C36 C N N 147
KPT O4 O N N 148
KPT O3 O N N 149
KPT C18 C Y N 150
KPT C13 C Y N 151
KPT C14 C Y N 152
KPT C17 C Y N 153
KPT C16 C Y N 154
KPT C15 C Y N 155
KPT C12 C Y N 156
KPT C11 C Y N 157
KPT C10 C Y N 158
KPT N N Y N 159
KPT C9 C N N 160
KPT C8 C N N 161
KPT C6 C Y N 162
KPT C5 C Y N 163
KPT C4 C Y N 164
KPT C7 C Y N 165
KPT C3 C Y N 166
KPT C2 C Y N 167
KPT O2 O N N 168
KPT O1 O N N 169
KPT C1 C N N 170
KPT H1 H N N 171
KPT H21 H N N 172
KPT H2 H N N 173
KPT H3 H N N 174
KPT H4 H N N 175
KPT H5 H N N 176
KPT H6 H N N 177
KPT H7 H N N 178
KPT H8 H N N 179
KPT H9 H N N 180
KPT H10 H N N 181
KPT H11 H N N 182
KPT H12 H N N 183
KPT H14 H N N 184
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
KPT O4 C36 sing N N 152
KPT O3 C36 sing N N 153
KPT C18 O3 sing N N 154
KPT C13 C14 sing Y N 155
KPT C13 C18 sing Y N 156
KPT C17 C18 doub Y N 157
KPT C17 O4 sing N N 158
KPT C16 C17 sing Y N 159
KPT C15 C12 sing Y N 160
KPT C15 C16 doub Y N 161
KPT C12 C13 doub Y N 162
KPT C11 C10 doub Y N 163
KPT C11 C12 sing Y N 164
KPT C10 N sing Y N 165
KPT N C9 sing N N 166
KPT N C14 doub Y N 167
KPT C8 C9 sing N N 168
KPT C6 C5 sing Y N 169
KPT C6 C10 sing N N 170
KPT C5 C8 sing N N 171
KPT C4 C5 doub Y N 172
KPT C7 C6 doub Y N 173
KPT C3 C2 doub Y N 174
KPT C3 C7 sing Y N 175
KPT C2 C4 sing Y N 176
KPT O2 C2 sing N N 177
KPT O1 C3 sing N N 178
KPT C1 O1 sing N N 179
KPT C1 O2 sing N N 180
KPT C36 H1 sing N N 181
KPT C36 H21 sing N N 182
KPT C14 H2 sing N N 183
KPT C16 H3 sing N N 184
KPT C15 H4 sing N N 185
KPT C11 H5 sing N N 186
KPT C9 H6 sing N N 187
KPT C9 H7 sing N N 188
KPT C8 H8 sing N N 189
KPT C8 H9 sing N N 190
KPT C4 H10 sing N N 191
KPT C7 H11 sing N N 192
KPT C1 H12 sing N N 193
KPT C1 H14 sing N N 194
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
4L5K 'double helix'
4L5K 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 10_555 1.272 -0.160 -0.124 21.562 -21.937 2.500 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 10_555 -1.140 -0.621 0.506 -3.802 -13.726 4.074 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DA 3 1_555 A DT 4 10_555 -0.411 0.108 0.222 5.750 -6.099 9.135 3 A_DA3:DT4_A A 3 ? A 4 ? ? 1
1 A DT 4 1_555 A DA 3 10_555 0.411 0.108 0.222 -5.750 -6.099 9.135 4 A_DT4:DA3_A A 4 ? A 3 ? ? 1
1 A DC 5 1_555 A DG 2 10_555 1.140 -0.621 0.506 3.802 -13.726 4.074 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 10_555 -1.272 -0.160 -0.124 -21.562 -21.937 2.500 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 10_555 A DG 2 1_555 A DC 5 10_555 0.288 1.072 7.037 -7.132 7.971 11.009 -10.120 -13.728 5.480 33.016
29.540 15.338 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 10_555 A DA 3 1_555 A DT 4 10_555 -1.168 1.197 3.275 -4.061 0.763 42.152 1.577 1.193 3.388 1.058 5.630
42.345 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DA 3 1_555 A DT 4 10_555 A DT 4 1_555 A DA 3 10_555 0.000 -0.733 3.591 0.000 2.136 32.455 -1.715 0.000 3.537 3.817 0.000
32.523 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DT 4 1_555 A DA 3 10_555 A DC 5 1_555 A DG 2 10_555 1.168 1.197 3.275 4.061 0.763 42.152 1.577 -1.193 3.388 1.058
-5.630 42.345 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 10_555 A DG 6 1_555 A DC 1 10_555 -0.288 1.072 7.037 7.132 7.971 11.009 -10.120 13.728 5.480 33.016
-29.540 15.337 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 '6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium' KPT
3 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3FT6
_pdbx_initial_refinement_model.details 'PDB ENTRY 3FT6'
#