data_4H5A
#
_entry.id 4H5A
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4H5A pdb_00004h5a 10.2210/pdb4h5a/pdb
NDB NA2024 ? ?
RCSB RCSB075036 ? ?
WWPDB D_1000075036 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-10-03
2 'Structure model' 1 1 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 2 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
4 2 'Structure model' struct_conn
5 2 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
4 2 'Structure model' '_struct_site.pdbx_auth_asym_id'
5 2 'Structure model' '_struct_site.pdbx_auth_comp_id'
6 2 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4H5A
_pdbx_database_status.recvd_initial_deposition_date 2012-09-18
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 4FP6
_pdbx_database_related.details 'Se-DNA without platinum crosslinked'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Zhang, W.' 1
'Coronado, G.' 2
'Huang, Z.' 3
#
_citation.id primary
_citation.title 'DNA octamer D (GTseGTACAC) partially crosslinked with platinum'
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Zhang, W.' 1 ?
primary 'Coronado, G.' 2 ?
primary 'Huang, Z.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3')
;
2520.592 1 ? ? ? 'short DNA 8mer with Se modification'
2 non-polymer syn 'PLATINUM (II) ION' 195.078 1 ? ? ? ?
3 water nat water 18.015 36 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(2ST)(DG)(DG)(DC)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GTGGCCAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'PLATINUM (II) ION' PT
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 2ST n
1 3 DG n
1 4 DG n
1 5 DC n
1 6 DC n
1 7 DA n
1 8 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
2ST 'DNA linking' n
;5-METHYL-2'-SE-METHYL-2'-SELENOURIDINE 5'-(DIHYDROGEN PHOSPHATE)
;
? 'C11 H17 N2 O8 P Se' 415.195
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
PT non-polymer . 'PLATINUM (II) ION' ? 'Pt 2' 195.078
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 2ST 2 2 2 2ST 2ST A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DG 4 4 4 DG G A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DC 6 6 6 DC C A . n
A 1 7 DA 7 7 7 DA A A . n
A 1 8 DC 8 8 8 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PT 1 101 1 PT PT A .
C 3 HOH 1 201 1 HOH HOH A .
C 3 HOH 2 202 2 HOH HOH A .
C 3 HOH 3 203 3 HOH HOH A .
C 3 HOH 4 204 4 HOH HOH A .
C 3 HOH 5 205 5 HOH HOH A .
C 3 HOH 6 206 6 HOH HOH A .
C 3 HOH 7 207 7 HOH HOH A .
C 3 HOH 8 208 8 HOH HOH A .
C 3 HOH 9 209 10 HOH HOH A .
C 3 HOH 10 210 11 HOH HOH A .
C 3 HOH 11 211 14 HOH HOH A .
C 3 HOH 12 212 18 HOH HOH A .
C 3 HOH 13 213 19 HOH HOH A .
C 3 HOH 14 214 20 HOH HOH A .
C 3 HOH 15 215 21 HOH HOH A .
C 3 HOH 16 216 22 HOH HOH A .
C 3 HOH 17 217 23 HOH HOH A .
C 3 HOH 18 218 24 HOH HOH A .
C 3 HOH 19 219 25 HOH HOH A .
C 3 HOH 20 220 26 HOH HOH A .
C 3 HOH 21 221 27 HOH HOH A .
C 3 HOH 22 222 28 HOH HOH A .
C 3 HOH 23 223 29 HOH HOH A .
C 3 HOH 24 224 32 HOH HOH A .
C 3 HOH 25 225 33 HOH HOH A .
C 3 HOH 26 226 35 HOH HOH A .
C 3 HOH 27 227 36 HOH HOH A .
C 3 HOH 28 228 37 HOH HOH A .
C 3 HOH 29 229 39 HOH HOH A .
C 3 HOH 30 230 41 HOH HOH A .
C 3 HOH 31 231 46 HOH HOH A .
C 3 HOH 32 232 47 HOH HOH A .
C 3 HOH 33 233 48 HOH HOH A .
C 3 HOH 34 234 49 HOH HOH A .
C 3 HOH 35 235 50 HOH HOH A .
C 3 HOH 36 236 51 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
HKL-2000 'data collection' . ? 1
PHASES phasing . ? 2
REFMAC refinement 5.5.0110 ? 3
HKL-2000 'data reduction' . ? 4
HKL-2000 'data scaling' . ? 5
#
_cell.entry_id 4H5A
_cell.length_a 42.310
_cell.length_b 42.310
_cell.length_c 24.310
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4H5A
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4H5A
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 5
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.16
_exptl_crystal.density_percent_sol 43.01
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.8
_exptl_crystal_grow.pdbx_details
'the platinum was added to the crystallization buffer , pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 99
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2012-07-13
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9795
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ALS BEAMLINE 8.2.2'
_diffrn_source.pdbx_synchrotron_site ALS
_diffrn_source.pdbx_synchrotron_beamline 8.2.2
_diffrn_source.pdbx_wavelength 0.9795
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 4H5A
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 21.08
_reflns.d_resolution_high 1.42
_reflns.number_obs 4265
_reflns.number_all ?
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs 0.091
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 17.93
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 12.5
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.42
_reflns_shell.d_res_low 1.47
_reflns_shell.percent_possible_all 99.5
_reflns_shell.Rmerge_I_obs 0.584
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 3.73
_reflns_shell.pdbx_redundancy 9.5
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4H5A
_refine.ls_number_reflns_obs 4265
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 21.08
_refine.ls_d_res_high 1.42
_refine.ls_percent_reflns_obs 99.25
_refine.ls_R_factor_obs 0.21317
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.21187
_refine.ls_R_factor_R_free 0.23708
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.6
_refine.ls_number_reflns_R_free 206
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.956
_refine.correlation_coeff_Fo_to_Fc_free 0.940
_refine.B_iso_mean 19.524
_refine.aniso_B[1][1] -0.02
_refine.aniso_B[2][2] -0.02
_refine.aniso_B[3][3] 0.03
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.074
_refine.pdbx_overall_ESU_R_Free 0.074
_refine.overall_SU_ML 0.057
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 1.458
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 163
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 36
_refine_hist.number_atoms_total 200
_refine_hist.d_res_high 1.42
_refine_hist.d_res_low 21.08
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 0.027 0.021 ? 180 ? 'X-RAY DIFFRACTION'
r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 3.145 3.000 ? 271 ? 'X-RAY DIFFRACTION'
r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_chiral_restr 0.437 0.200 ? 32 ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 0.029 0.020 ? 84 ? 'X-RAY DIFFRACTION'
r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scbond_it 2.456 3.000 ? 180 ? 'X-RAY DIFFRACTION'
r_scangle_it 3.151 4.500 ? 271 ? 'X-RAY DIFFRACTION'
r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.418
_refine_ls_shell.d_res_low 1.455
_refine_ls_shell.number_reflns_R_work 293
_refine_ls_shell.R_factor_R_work 0.402
_refine_ls_shell.percent_reflns_obs 96.01
_refine_ls_shell.R_factor_R_free 0.457
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 20
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 4H5A
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4H5A
_struct.title 'DNA octamer D (GTseGTACAC) partially crosslinked with platinum'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4H5A
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'selenium modification to facilitate crystallization, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4H5A
_struct_ref.pdbx_db_accession 4H5A
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4H5A
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4H5A
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2210 ?
1 MORE -30 ?
1 'SSA (A^2)' 2880 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -12.1550000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 2ST 2 P ? ? A DG 1 A 2ST 2 1_555 ? ? ? ? ? ? ? 1.625 ? ?
covale2 covale both ? A 2ST 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A 2ST 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.767 ? ?
metalc1 metalc ? ? A DG 4 N7 ? ? ? 1_555 B PT . PT ? ? A DG 4 A PT 101 1_555 ? ? ? ? ? ? ? 2.175 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A 2ST 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A 2ST 2 A DA 7 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A 2ST 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A 2ST 2 A DA 7 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 4 A DC 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 4 A DC 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 4 A DC 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 5 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 5 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 5 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A 2ST 2 N3 ? ? A DA 7 A 2ST 2 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A 2ST 2 O4 ? ? A DA 7 A 2ST 2 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id PT
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 2
_struct_site.details 'BINDING SITE FOR RESIDUE PT A 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 2 DG A 4 ? DG A 4 . ? 1_555 ?
2 AC1 2 HOH C . ? HOH A 220 . ? 1_555 ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O A HOH 209 ? ? O A HOH 223 ? ? 1.79
2 1 OP2 A DG 3 ? ? O A HOH 231 ? ? 1.94
3 1 O A HOH 222 ? ? O A HOH 223 ? ? 2.00
4 1 O A HOH 227 ? ? O A HOH 231 ? ? 2.11
#
_pdbx_validate_symm_contact.id 1
_pdbx_validate_symm_contact.PDB_model_num 1
_pdbx_validate_symm_contact.auth_atom_id_1 O
_pdbx_validate_symm_contact.auth_asym_id_1 A
_pdbx_validate_symm_contact.auth_comp_id_1 HOH
_pdbx_validate_symm_contact.auth_seq_id_1 224
_pdbx_validate_symm_contact.PDB_ins_code_1 ?
_pdbx_validate_symm_contact.label_alt_id_1 ?
_pdbx_validate_symm_contact.site_symmetry_1 1_555
_pdbx_validate_symm_contact.auth_atom_id_2 O
_pdbx_validate_symm_contact.auth_asym_id_2 A
_pdbx_validate_symm_contact.auth_comp_id_2 HOH
_pdbx_validate_symm_contact.auth_seq_id_2 232
_pdbx_validate_symm_contact.PDB_ins_code_2 ?
_pdbx_validate_symm_contact.label_alt_id_2 ?
_pdbx_validate_symm_contact.site_symmetry_2 7_655
_pdbx_validate_symm_contact.dist 1.98
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" A 2ST 2 ? ? P A DG 3 ? ? 1.767 1.607 0.160 0.012 Y
2 1 C5 A DG 3 ? ? N7 A DG 3 ? ? 1.432 1.388 0.044 0.006 N
3 1 N3 A DC 8 ? ? C4 A DC 8 ? ? 1.292 1.335 -0.043 0.007 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 123.06 115.70 7.36 1.20 N
2 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 91.87 102.20 -10.33 0.70 N
3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.64 108.30 2.34 0.30 N
4 1 N3 A DG 3 ? ? C4 A DG 3 ? ? C5 A DG 3 ? ? 134.02 128.60 5.42 0.50 N
5 1 C5 A DG 3 ? ? N7 A DG 3 ? ? C8 A DG 3 ? ? 100.17 104.30 -4.13 0.50 N
6 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.78 113.10 4.68 0.50 N
7 1 N3 A DG 3 ? ? C4 A DG 3 ? ? N9 A DG 3 ? ? 121.85 126.00 -4.15 0.60 N
8 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 100.27 104.50 -4.23 0.40 N
9 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.04 121.90 -4.86 0.70 N
10 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 102.10 104.50 -2.40 0.40 N
11 1 N3 A DC 6 ? ? C4 A DC 6 ? ? C5 A DC 6 ? ? 119.35 121.90 -2.55 0.40 N
12 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 127.07 121.90 5.17 0.70 N
13 1 "O4'" A DA 7 ? ? "C4'" A DA 7 ? ? "C3'" A DA 7 ? ? 101.56 104.50 -2.94 0.40 N
14 1 C6 A DA 7 ? ? N1 A DA 7 ? ? C2 A DA 7 ? ? 122.78 118.60 4.18 0.60 N
15 1 N1 A DA 7 ? ? C2 A DA 7 ? ? N3 A DA 7 ? ? 125.35 129.30 -3.95 0.50 N
16 1 N9 A DA 7 ? ? C4 A DA 7 ? ? C5 A DA 7 ? ? 103.07 105.80 -2.73 0.40 N
17 1 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 123.02 118.60 4.42 0.60 N
18 1 "C4'" A DC 8 ? ? "C3'" A DC 8 ? ? "C2'" A DC 8 ? ? 108.93 103.10 5.83 0.90 N
19 1 N1 A DC 8 ? ? C2 A DC 8 ? ? N3 A DC 8 ? ? 112.52 119.20 -6.68 0.70 N
20 1 C2 A DC 8 ? ? N3 A DC 8 ? ? C4 A DC 8 ? ? 125.37 119.90 5.47 0.50 N
21 1 N3 A DC 8 ? ? C2 A DC 8 ? ? O2 A DC 8 ? ? 126.18 121.90 4.28 0.70 N
#
_pdbx_validate_polymer_linkage.id 1
_pdbx_validate_polymer_linkage.PDB_model_num 1
_pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'"
_pdbx_validate_polymer_linkage.auth_asym_id_1 A
_pdbx_validate_polymer_linkage.auth_comp_id_1 2ST
_pdbx_validate_polymer_linkage.auth_seq_id_1 2
_pdbx_validate_polymer_linkage.PDB_ins_code_1 ?
_pdbx_validate_polymer_linkage.label_alt_id_1 ?
_pdbx_validate_polymer_linkage.auth_atom_id_2 P
_pdbx_validate_polymer_linkage.auth_asym_id_2 A
_pdbx_validate_polymer_linkage.auth_comp_id_2 DG
_pdbx_validate_polymer_linkage.auth_seq_id_2 3
_pdbx_validate_polymer_linkage.PDB_ins_code_2 ?
_pdbx_validate_polymer_linkage.label_alt_id_2 ?
_pdbx_validate_polymer_linkage.dist 1.77
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id 2ST
_pdbx_struct_mod_residue.label_seq_id 2
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id 2ST
_pdbx_struct_mod_residue.auth_seq_id 2
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DT
_pdbx_struct_mod_residue.details ?
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 234
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
2ST OP3 O N N 1
2ST P P N N 2
2ST OP1 O N N 3
2ST OP2 O N N 4
2ST "O5'" O N N 5
2ST N1 N N N 6
2ST C6 C N N 7
2ST C2 C N N 8
2ST O2 O N N 9
2ST N3 N N N 10
2ST C4 C N N 11
2ST O4 O N N 12
2ST C5 C N N 13
2ST C5A C N N 14
2ST "C2'" C N R 15
2ST "C5'" C N N 16
2ST "C4'" C N R 17
2ST "O4'" O N N 18
2ST "C1'" C N R 19
2ST "C3'" C N R 20
2ST SE SE N N 21
2ST "CA'" C N N 22
2ST "O3'" O N N 23
2ST HOP3 H N N 24
2ST HOP2 H N N 25
2ST H6 H N N 26
2ST HN3 H N N 27
2ST H5A1 H N N 28
2ST H5A2 H N N 29
2ST H5A3 H N N 30
2ST "H2'" H N N 31
2ST "H5'" H N N 32
2ST "H5''" H N N 33
2ST "H4'" H N N 34
2ST "H1'" H N N 35
2ST "H3'" H N N 36
2ST "HA'1" H N N 37
2ST "HA'2" H N N 38
2ST "HA'3" H N N 39
2ST "HO3'" H N N 40
DA OP3 O N N 41
DA P P N N 42
DA OP1 O N N 43
DA OP2 O N N 44
DA "O5'" O N N 45
DA "C5'" C N N 46
DA "C4'" C N R 47
DA "O4'" O N N 48
DA "C3'" C N S 49
DA "O3'" O N N 50
DA "C2'" C N N 51
DA "C1'" C N R 52
DA N9 N Y N 53
DA C8 C Y N 54
DA N7 N Y N 55
DA C5 C Y N 56
DA C6 C Y N 57
DA N6 N N N 58
DA N1 N Y N 59
DA C2 C Y N 60
DA N3 N Y N 61
DA C4 C Y N 62
DA HOP3 H N N 63
DA HOP2 H N N 64
DA "H5'" H N N 65
DA "H5''" H N N 66
DA "H4'" H N N 67
DA "H3'" H N N 68
DA "HO3'" H N N 69
DA "H2'" H N N 70
DA "H2''" H N N 71
DA "H1'" H N N 72
DA H8 H N N 73
DA H61 H N N 74
DA H62 H N N 75
DA H2 H N N 76
DC OP3 O N N 77
DC P P N N 78
DC OP1 O N N 79
DC OP2 O N N 80
DC "O5'" O N N 81
DC "C5'" C N N 82
DC "C4'" C N R 83
DC "O4'" O N N 84
DC "C3'" C N S 85
DC "O3'" O N N 86
DC "C2'" C N N 87
DC "C1'" C N R 88
DC N1 N N N 89
DC C2 C N N 90
DC O2 O N N 91
DC N3 N N N 92
DC C4 C N N 93
DC N4 N N N 94
DC C5 C N N 95
DC C6 C N N 96
DC HOP3 H N N 97
DC HOP2 H N N 98
DC "H5'" H N N 99
DC "H5''" H N N 100
DC "H4'" H N N 101
DC "H3'" H N N 102
DC "HO3'" H N N 103
DC "H2'" H N N 104
DC "H2''" H N N 105
DC "H1'" H N N 106
DC H41 H N N 107
DC H42 H N N 108
DC H5 H N N 109
DC H6 H N N 110
DG OP3 O N N 111
DG P P N N 112
DG OP1 O N N 113
DG OP2 O N N 114
DG "O5'" O N N 115
DG "C5'" C N N 116
DG "C4'" C N R 117
DG "O4'" O N N 118
DG "C3'" C N S 119
DG "O3'" O N N 120
DG "C2'" C N N 121
DG "C1'" C N R 122
DG N9 N Y N 123
DG C8 C Y N 124
DG N7 N Y N 125
DG C5 C Y N 126
DG C6 C N N 127
DG O6 O N N 128
DG N1 N N N 129
DG C2 C N N 130
DG N2 N N N 131
DG N3 N N N 132
DG C4 C Y N 133
DG HOP3 H N N 134
DG HOP2 H N N 135
DG "H5'" H N N 136
DG "H5''" H N N 137
DG "H4'" H N N 138
DG "H3'" H N N 139
DG "HO3'" H N N 140
DG "H2'" H N N 141
DG "H2''" H N N 142
DG "H1'" H N N 143
DG H8 H N N 144
DG H1 H N N 145
DG H21 H N N 146
DG H22 H N N 147
HOH O O N N 148
HOH H1 H N N 149
HOH H2 H N N 150
PT PT PT N N 151
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2ST OP3 P sing N N 1
2ST OP3 HOP3 sing N N 2
2ST P OP1 doub N N 3
2ST P OP2 sing N N 4
2ST P "O5'" sing N N 5
2ST OP2 HOP2 sing N N 6
2ST "O5'" "C5'" sing N N 7
2ST N1 C6 sing N N 8
2ST N1 C2 sing N N 9
2ST N1 "C1'" sing N N 10
2ST C6 C5 doub N N 11
2ST C6 H6 sing N N 12
2ST C2 O2 doub N N 13
2ST C2 N3 sing N N 14
2ST N3 C4 sing N N 15
2ST N3 HN3 sing N N 16
2ST C4 O4 doub N N 17
2ST C4 C5 sing N N 18
2ST C5 C5A sing N N 19
2ST C5A H5A1 sing N N 20
2ST C5A H5A2 sing N N 21
2ST C5A H5A3 sing N N 22
2ST "C2'" "C1'" sing N N 23
2ST "C2'" "C3'" sing N N 24
2ST "C2'" SE sing N N 25
2ST "C2'" "H2'" sing N N 26
2ST "C5'" "C4'" sing N N 27
2ST "C5'" "H5'" sing N N 28
2ST "C5'" "H5''" sing N N 29
2ST "C4'" "O4'" sing N N 30
2ST "C4'" "C3'" sing N N 31
2ST "C4'" "H4'" sing N N 32
2ST "O4'" "C1'" sing N N 33
2ST "C1'" "H1'" sing N N 34
2ST "C3'" "O3'" sing N N 35
2ST "C3'" "H3'" sing N N 36
2ST SE "CA'" sing N N 37
2ST "CA'" "HA'1" sing N N 38
2ST "CA'" "HA'2" sing N N 39
2ST "CA'" "HA'3" sing N N 40
2ST "O3'" "HO3'" sing N N 41
DA OP3 P sing N N 42
DA OP3 HOP3 sing N N 43
DA P OP1 doub N N 44
DA P OP2 sing N N 45
DA P "O5'" sing N N 46
DA OP2 HOP2 sing N N 47
DA "O5'" "C5'" sing N N 48
DA "C5'" "C4'" sing N N 49
DA "C5'" "H5'" sing N N 50
DA "C5'" "H5''" sing N N 51
DA "C4'" "O4'" sing N N 52
DA "C4'" "C3'" sing N N 53
DA "C4'" "H4'" sing N N 54
DA "O4'" "C1'" sing N N 55
DA "C3'" "O3'" sing N N 56
DA "C3'" "C2'" sing N N 57
DA "C3'" "H3'" sing N N 58
DA "O3'" "HO3'" sing N N 59
DA "C2'" "C1'" sing N N 60
DA "C2'" "H2'" sing N N 61
DA "C2'" "H2''" sing N N 62
DA "C1'" N9 sing N N 63
DA "C1'" "H1'" sing N N 64
DA N9 C8 sing Y N 65
DA N9 C4 sing Y N 66
DA C8 N7 doub Y N 67
DA C8 H8 sing N N 68
DA N7 C5 sing Y N 69
DA C5 C6 sing Y N 70
DA C5 C4 doub Y N 71
DA C6 N6 sing N N 72
DA C6 N1 doub Y N 73
DA N6 H61 sing N N 74
DA N6 H62 sing N N 75
DA N1 C2 sing Y N 76
DA C2 N3 doub Y N 77
DA C2 H2 sing N N 78
DA N3 C4 sing Y N 79
DC OP3 P sing N N 80
DC OP3 HOP3 sing N N 81
DC P OP1 doub N N 82
DC P OP2 sing N N 83
DC P "O5'" sing N N 84
DC OP2 HOP2 sing N N 85
DC "O5'" "C5'" sing N N 86
DC "C5'" "C4'" sing N N 87
DC "C5'" "H5'" sing N N 88
DC "C5'" "H5''" sing N N 89
DC "C4'" "O4'" sing N N 90
DC "C4'" "C3'" sing N N 91
DC "C4'" "H4'" sing N N 92
DC "O4'" "C1'" sing N N 93
DC "C3'" "O3'" sing N N 94
DC "C3'" "C2'" sing N N 95
DC "C3'" "H3'" sing N N 96
DC "O3'" "HO3'" sing N N 97
DC "C2'" "C1'" sing N N 98
DC "C2'" "H2'" sing N N 99
DC "C2'" "H2''" sing N N 100
DC "C1'" N1 sing N N 101
DC "C1'" "H1'" sing N N 102
DC N1 C2 sing N N 103
DC N1 C6 sing N N 104
DC C2 O2 doub N N 105
DC C2 N3 sing N N 106
DC N3 C4 doub N N 107
DC C4 N4 sing N N 108
DC C4 C5 sing N N 109
DC N4 H41 sing N N 110
DC N4 H42 sing N N 111
DC C5 C6 doub N N 112
DC C5 H5 sing N N 113
DC C6 H6 sing N N 114
DG OP3 P sing N N 115
DG OP3 HOP3 sing N N 116
DG P OP1 doub N N 117
DG P OP2 sing N N 118
DG P "O5'" sing N N 119
DG OP2 HOP2 sing N N 120
DG "O5'" "C5'" sing N N 121
DG "C5'" "C4'" sing N N 122
DG "C5'" "H5'" sing N N 123
DG "C5'" "H5''" sing N N 124
DG "C4'" "O4'" sing N N 125
DG "C4'" "C3'" sing N N 126
DG "C4'" "H4'" sing N N 127
DG "O4'" "C1'" sing N N 128
DG "C3'" "O3'" sing N N 129
DG "C3'" "C2'" sing N N 130
DG "C3'" "H3'" sing N N 131
DG "O3'" "HO3'" sing N N 132
DG "C2'" "C1'" sing N N 133
DG "C2'" "H2'" sing N N 134
DG "C2'" "H2''" sing N N 135
DG "C1'" N9 sing N N 136
DG "C1'" "H1'" sing N N 137
DG N9 C8 sing Y N 138
DG N9 C4 sing Y N 139
DG C8 N7 doub Y N 140
DG C8 H8 sing N N 141
DG N7 C5 sing Y N 142
DG C5 C6 sing N N 143
DG C5 C4 doub Y N 144
DG C6 O6 doub N N 145
DG C6 N1 sing N N 146
DG N1 C2 sing N N 147
DG N1 H1 sing N N 148
DG C2 N2 sing N N 149
DG C2 N3 doub N N 150
DG N2 H21 sing N N 151
DG N2 H22 sing N N 152
DG N3 C4 sing N N 153
HOH O H1 sing N N 154
HOH O H2 sing N N 155
#
_ndb_struct_conf_na.entry_id 4H5A
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 8_554 -0.381 -0.011 -0.355 -20.786 -9.164 1.784 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A 2ST 2 1_555 A DA 7 8_554 -0.169 -0.105 0.126 -7.576 -12.387 -1.021 2 A_2ST2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 8_554 -0.220 -0.218 0.134 -5.038 -11.692 -1.523 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A DG 4 1_555 A DC 5 8_554 -0.176 -0.079 0.099 -5.367 -14.376 -0.746 4 A_DG4:DC5_A A 4 ? A 5 ? 19 1
1 A DC 5 1_555 A DG 4 8_554 0.176 -0.079 0.099 5.367 -14.375 -0.746 5 A_DC5:DG4_A A 5 ? A 4 ? 19 1
1 A DC 6 1_555 A DG 3 8_554 0.220 -0.218 0.134 5.038 -11.692 -1.523 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DA 7 1_555 A 2ST 2 8_554 0.169 -0.105 0.126 7.576 -12.387 -1.021 7 A_DA7:2ST2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 8_554 0.381 -0.011 -0.355 20.786 -9.164 1.784 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 8_554 A 2ST 2 1_555 A DA 7 8_554 -0.047 -1.014 3.074 -2.722 9.366 31.136 -3.270 -0.342 2.660 16.935 4.922
32.592 1 AA_DG12ST2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A 2ST 2 1_555 A DA 7 8_554 A DG 3 1_555 A DC 6 8_554 0.599 -1.409 3.143 1.423 9.093 29.102 -4.314 -0.883 2.619 17.549
-2.747 30.493 2 AA_2ST2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 8_554 A DG 4 1_555 A DC 5 8_554 0.375 -1.701 3.224 2.924 5.948 35.261 -3.572 -0.211 2.928 9.713
-4.774 35.859 3 AA_DG3DG4:DC5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DG 4 1_555 A DC 5 8_554 A DC 5 1_555 A DG 4 8_554 0.000 -1.061 3.111 0.000 4.588 29.187 -2.984 0.000 2.914 9.034 0.000
29.538 4 AA_DG4DC5:DG4DC5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DC 5 1_555 A DG 4 8_554 A DC 6 1_555 A DG 3 8_554 -0.375 -1.701 3.224 -2.924 5.948 35.261 -3.572 0.211 2.928 9.713 4.774
35.859 5 AA_DC5DC6:DG3DG4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 8_554 A DA 7 1_555 A 2ST 2 8_554 -0.599 -1.409 3.143 -1.423 9.093 29.102 -4.314 0.883 2.619 17.549 2.747
30.493 6 AA_DC6DA7:2ST2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DA 7 1_555 A 2ST 2 8_554 A DC 8 1_555 A DG 1 8_554 0.047 -1.014 3.074 2.722 9.366 31.136 -3.270 0.342 2.660 16.935
-4.922 32.592 7 AA_DA7DC8:DG12ST2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 4H5A
_atom_sites.fract_transf_matrix[1][1] 0.023635
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023635
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.041135
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
PT
SE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -2.253 -7.530 -11.411 1.00 18.64 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -3.671 -7.405 -11.048 1.00 17.67 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -4.176 -8.637 -10.329 1.00 15.92 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -4.077 -9.799 -11.220 1.00 16.24 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -3.446 -9.050 -9.073 1.00 16.79 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -3.944 -8.250 -7.942 1.00 19.82 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -3.798 -10.543 -8.970 1.00 15.57 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -3.725 -10.916 -10.432 1.00 15.17 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -2.369 -11.305 -10.841 1.00 14.24 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -1.484 -10.578 -11.591 1.00 13.68 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -0.343 -11.231 -11.780 1.00 14.79 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? -0.502 -12.432 -11.113 1.00 13.04 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 0.415 -13.526 -10.962 1.00 13.14 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 1.548 -13.654 -11.492 1.00 15.85 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? -0.182 -14.547 -10.231 1.00 13.81 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? -1.396 -14.541 -9.650 1.00 16.75 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? -1.783 -15.599 -8.972 1.00 17.67 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? -2.253 -13.538 -9.775 1.00 16.28 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? -1.729 -12.490 -10.485 1.00 14.45 ? 1 DG A C4 1
HETATM 20 P P . 2ST A 1 2 ? -2.950 -7.826 -6.728 1.00 20.21 ? 2 2ST A P 1
HETATM 21 O OP1 . 2ST A 1 2 ? -3.922 -6.890 -5.861 1.00 22.79 ? 2 2ST A OP1 1
HETATM 22 O OP2 . 2ST A 1 2 ? -1.622 -7.326 -7.297 1.00 18.27 ? 2 2ST A OP2 1
HETATM 23 O "O5'" . 2ST A 1 2 ? -2.702 -9.281 -5.998 1.00 18.81 ? 2 2ST A "O5'" 1
HETATM 24 N N1 . 2ST A 1 2 ? -0.718 -12.642 -6.468 1.00 16.29 ? 2 2ST A N1 1
HETATM 25 C C6 . 2ST A 1 2 ? -0.531 -11.455 -7.099 1.00 15.65 ? 2 2ST A C6 1
HETATM 26 C C2 . 2ST A 1 2 ? 0.222 -13.603 -6.612 1.00 17.61 ? 2 2ST A C2 1
HETATM 27 O O2 . 2ST A 1 2 ? 0.123 -14.685 -5.980 1.00 18.94 ? 2 2ST A O2 1
HETATM 28 N N3 . 2ST A 1 2 ? 1.287 -13.362 -7.388 1.00 14.89 ? 2 2ST A N3 1
HETATM 29 C C4 . 2ST A 1 2 ? 1.526 -12.176 -8.044 1.00 13.65 ? 2 2ST A C4 1
HETATM 30 O O4 . 2ST A 1 2 ? 2.500 -12.022 -8.780 1.00 14.73 ? 2 2ST A O4 1
HETATM 31 C C5 . 2ST A 1 2 ? 0.526 -11.135 -7.921 1.00 14.60 ? 2 2ST A C5 1
HETATM 32 C C5A . 2ST A 1 2 ? 0.716 -9.816 -8.618 1.00 15.06 ? 2 2ST A C5A 1
HETATM 33 C "C2'" . 2ST A 1 2 ? -1.603 -12.753 -4.141 1.00 19.68 ? 2 2ST A "C2'" 1
HETATM 34 C "C5'" . 2ST A 1 2 ? -3.737 -9.873 -5.283 1.00 18.51 ? 2 2ST A "C5'" 1
HETATM 35 C "C4'" . 2ST A 1 2 ? -3.262 -11.248 -4.851 1.00 18.19 ? 2 2ST A "C4'" 1
HETATM 36 O "O4'" . 2ST A 1 2 ? -2.893 -12.046 -5.981 1.00 16.85 ? 2 2ST A "O4'" 1
HETATM 37 C "C1'" . 2ST A 1 2 ? -1.874 -12.937 -5.624 1.00 17.83 ? 2 2ST A "C1'" 1
HETATM 38 C "C3'" . 2ST A 1 2 ? -1.994 -11.286 -4.003 1.00 20.61 ? 2 2ST A "C3'" 1
HETATM 39 SE SE . 2ST A 1 2 ? -2.750 -13.933 -3.001 1.00 25.26 ? 2 2ST A SE 1
HETATM 40 C "CA'" . 2ST A 1 2 ? -1.750 -15.605 -3.339 1.00 23.17 ? 2 2ST A "CA'" 1
HETATM 41 O "O3'" . 2ST A 1 2 ? -2.313 -10.905 -2.689 1.00 25.73 ? 2 2ST A "O3'" 1
ATOM 42 P P . DG A 1 3 ? -1.043 -10.054 -1.803 1.00 28.71 ? 3 DG A P 1
ATOM 43 O OP1 . DG A 1 3 ? -1.761 -9.636 -0.625 1.00 34.75 ? 3 DG A OP1 1
ATOM 44 O OP2 . DG A 1 3 ? -0.373 -9.059 -2.677 1.00 30.44 ? 3 DG A OP2 1
ATOM 45 O "O5'" . DG A 1 3 ? 0.160 -11.081 -1.483 1.00 28.51 ? 3 DG A "O5'" 1
ATOM 46 C "C5'" . DG A 1 3 ? -0.071 -12.247 -0.768 1.00 27.98 ? 3 DG A "C5'" 1
ATOM 47 C "C4'" . DG A 1 3 ? 1.084 -13.229 -0.950 1.00 23.53 ? 3 DG A "C4'" 1
ATOM 48 O "O4'" . DG A 1 3 ? 0.985 -13.676 -2.334 1.00 21.19 ? 3 DG A "O4'" 1
ATOM 49 C "C3'" . DG A 1 3 ? 2.558 -12.828 -0.789 1.00 23.77 ? 3 DG A "C3'" 1
ATOM 50 O "O3'" . DG A 1 3 ? 2.962 -12.754 0.626 1.00 22.65 ? 3 DG A "O3'" 1
ATOM 51 C "C2'" . DG A 1 3 ? 3.034 -14.117 -1.460 1.00 20.91 ? 3 DG A "C2'" 1
ATOM 52 C "C1'" . DG A 1 3 ? 2.215 -14.206 -2.749 1.00 21.18 ? 3 DG A "C1'" 1
ATOM 53 N N9 . DG A 1 3 ? 2.797 -13.386 -3.829 1.00 18.68 ? 3 DG A N9 1
ATOM 54 C C8 . DG A 1 3 ? 2.469 -12.144 -4.269 1.00 18.09 ? 3 DG A C8 1
ATOM 55 N N7 . DG A 1 3 ? 3.175 -11.638 -5.224 1.00 20.22 ? 3 DG A N7 1
ATOM 56 C C5 . DG A 1 3 ? 4.121 -12.694 -5.426 1.00 16.64 ? 3 DG A C5 1
ATOM 57 C C6 . DG A 1 3 ? 5.234 -12.823 -6.321 1.00 13.81 ? 3 DG A C6 1
ATOM 58 O O6 . DG A 1 3 ? 5.597 -12.038 -7.165 1.00 16.57 ? 3 DG A O6 1
ATOM 59 N N1 . DG A 1 3 ? 5.898 -14.069 -6.119 1.00 15.67 ? 3 DG A N1 1
ATOM 60 C C2 . DG A 1 3 ? 5.560 -15.055 -5.240 1.00 13.58 ? 3 DG A C2 1
ATOM 61 N N2 . DG A 1 3 ? 6.348 -16.141 -5.230 1.00 15.86 ? 3 DG A N2 1
ATOM 62 N N3 . DG A 1 3 ? 4.542 -14.947 -4.403 1.00 16.17 ? 3 DG A N3 1
ATOM 63 C C4 . DG A 1 3 ? 3.911 -13.762 -4.593 1.00 15.87 ? 3 DG A C4 1
ATOM 64 P P . DG A 1 4 ? 4.266 -11.959 1.103 1.00 23.47 ? 4 DG A P 1
ATOM 65 O OP1 . DG A 1 4 ? 4.275 -12.098 2.600 1.00 28.49 ? 4 DG A OP1 1
ATOM 66 O OP2 . DG A 1 4 ? 4.478 -10.688 0.436 1.00 26.81 ? 4 DG A OP2 1
ATOM 67 O "O5'" . DG A 1 4 ? 5.435 -12.917 0.554 1.00 23.00 ? 4 DG A "O5'" 1
ATOM 68 C "C5'" . DG A 1 4 ? 5.543 -14.234 1.057 1.00 21.76 ? 4 DG A "C5'" 1
ATOM 69 C "C4'" . DG A 1 4 ? 6.667 -14.989 0.325 1.00 21.55 ? 4 DG A "C4'" 1
ATOM 70 O "O4'" . DG A 1 4 ? 6.431 -15.004 -1.125 1.00 18.63 ? 4 DG A "O4'" 1
ATOM 71 C "C3'" . DG A 1 4 ? 7.977 -14.290 0.373 1.00 21.16 ? 4 DG A "C3'" 1
ATOM 72 O "O3'" . DG A 1 4 ? 8.546 -14.687 1.617 1.00 23.43 ? 4 DG A "O3'" 1
ATOM 73 C "C2'" . DG A 1 4 ? 8.729 -14.899 -0.788 1.00 18.33 ? 4 DG A "C2'" 1
ATOM 74 C "C1'" . DG A 1 4 ? 7.643 -14.898 -1.866 1.00 16.65 ? 4 DG A "C1'" 1
ATOM 75 N N9 . DG A 1 4 ? 7.529 -13.665 -2.650 1.00 17.31 ? 4 DG A N9 1
ATOM 76 C C8 . DG A 1 4 ? 6.644 -12.610 -2.477 1.00 17.92 ? 4 DG A C8 1
ATOM 77 N N7 . DG A 1 4 ? 6.804 -11.641 -3.339 1.00 15.96 ? 4 DG A N7 1
ATOM 78 C C5 . DG A 1 4 ? 7.819 -12.140 -4.153 1.00 13.93 ? 4 DG A C5 1
ATOM 79 C C6 . DG A 1 4 ? 8.419 -11.571 -5.327 1.00 13.39 ? 4 DG A C6 1
ATOM 80 O O6 . DG A 1 4 ? 8.149 -10.493 -5.908 1.00 16.52 ? 4 DG A O6 1
ATOM 81 N N1 . DG A 1 4 ? 9.422 -12.401 -5.841 1.00 11.84 ? 4 DG A N1 1
ATOM 82 C C2 . DG A 1 4 ? 9.812 -13.602 -5.271 1.00 11.88 ? 4 DG A C2 1
ATOM 83 N N2 . DG A 1 4 ? 10.822 -14.254 -5.831 1.00 13.72 ? 4 DG A N2 1
ATOM 84 N N3 . DG A 1 4 ? 9.249 -14.130 -4.223 1.00 12.19 ? 4 DG A N3 1
ATOM 85 C C4 . DG A 1 4 ? 8.263 -13.383 -3.719 1.00 13.98 ? 4 DG A C4 1
ATOM 86 P P . DC A 1 5 ? 9.480 -13.758 2.473 1.00 24.72 ? 5 DC A P 1
ATOM 87 O OP1 . DC A 1 5 ? 9.516 -14.387 3.788 1.00 27.28 ? 5 DC A OP1 1
ATOM 88 O OP2 . DC A 1 5 ? 9.344 -12.386 2.208 1.00 21.44 ? 5 DC A OP2 1
ATOM 89 O "O5'" . DC A 1 5 ? 10.907 -14.202 1.890 1.00 27.80 ? 5 DC A "O5'" 1
ATOM 90 C "C5'" . DC A 1 5 ? 11.984 -13.427 1.719 1.00 22.28 ? 5 DC A "C5'" 1
ATOM 91 C "C4'" . DC A 1 5 ? 12.741 -14.065 0.575 1.00 19.64 ? 5 DC A "C4'" 1
ATOM 92 O "O4'" . DC A 1 5 ? 11.870 -14.174 -0.619 1.00 16.88 ? 5 DC A "O4'" 1
ATOM 93 C "C3'" . DC A 1 5 ? 13.858 -13.129 0.196 1.00 18.20 ? 5 DC A "C3'" 1
ATOM 94 O "O3'" . DC A 1 5 ? 14.985 -13.478 0.947 1.00 18.61 ? 5 DC A "O3'" 1
ATOM 95 C "C2'" . DC A 1 5 ? 13.980 -13.370 -1.270 1.00 16.15 ? 5 DC A "C2'" 1
ATOM 96 C "C1'" . DC A 1 5 ? 12.550 -13.579 -1.733 1.00 16.34 ? 5 DC A "C1'" 1
ATOM 97 N N1 . DC A 1 5 ? 11.836 -12.360 -2.161 1.00 15.07 ? 5 DC A N1 1
ATOM 98 C C2 . DC A 1 5 ? 12.150 -11.769 -3.370 1.00 12.85 ? 5 DC A C2 1
ATOM 99 O O2 . DC A 1 5 ? 13.051 -12.208 -4.053 1.00 14.03 ? 5 DC A O2 1
ATOM 100 N N3 . DC A 1 5 ? 11.541 -10.670 -3.806 1.00 13.43 ? 5 DC A N3 1
ATOM 101 C C4 . DC A 1 5 ? 10.551 -10.159 -3.048 1.00 14.38 ? 5 DC A C4 1
ATOM 102 N N4 . DC A 1 5 ? 9.911 -9.101 -3.533 1.00 15.22 ? 5 DC A N4 1
ATOM 103 C C5 . DC A 1 5 ? 10.166 -10.699 -1.783 1.00 14.98 ? 5 DC A C5 1
ATOM 104 C C6 . DC A 1 5 ? 10.845 -11.789 -1.366 1.00 17.36 ? 5 DC A C6 1
ATOM 105 P P . DC A 1 6 ? 16.028 -12.334 1.398 1.00 19.76 ? 6 DC A P 1
ATOM 106 O OP1 . DC A 1 6 ? 17.032 -13.099 2.175 1.00 22.40 ? 6 DC A OP1 1
ATOM 107 O OP2 . DC A 1 6 ? 15.283 -11.242 1.927 1.00 20.83 ? 6 DC A OP2 1
ATOM 108 O "O5'" . DC A 1 6 ? 16.735 -11.838 0.083 1.00 16.99 ? 6 DC A "O5'" 1
ATOM 109 C "C5'" . DC A 1 6 ? 17.611 -12.648 -0.617 1.00 17.18 ? 6 DC A "C5'" 1
ATOM 110 C "C4'" . DC A 1 6 ? 18.024 -11.970 -1.906 1.00 16.50 ? 6 DC A "C4'" 1
ATOM 111 O "O4'" . DC A 1 6 ? 16.913 -11.832 -2.801 1.00 16.80 ? 6 DC A "O4'" 1
ATOM 112 C "C3'" . DC A 1 6 ? 18.529 -10.546 -1.805 1.00 16.41 ? 6 DC A "C3'" 1
ATOM 113 O "O3'" . DC A 1 6 ? 19.885 -10.511 -1.315 1.00 18.26 ? 6 DC A "O3'" 1
ATOM 114 C "C2'" . DC A 1 6 ? 18.375 -10.050 -3.242 1.00 15.73 ? 6 DC A "C2'" 1
ATOM 115 C "C1'" . DC A 1 6 ? 17.046 -10.660 -3.619 1.00 14.21 ? 6 DC A "C1'" 1
ATOM 116 N N1 . DC A 1 6 ? 15.902 -9.725 -3.339 1.00 12.98 ? 6 DC A N1 1
ATOM 117 C C2 . DC A 1 6 ? 15.634 -8.713 -4.297 1.00 11.92 ? 6 DC A C2 1
ATOM 118 O O2 . DC A 1 6 ? 16.439 -8.626 -5.230 1.00 14.74 ? 6 DC A O2 1
ATOM 119 N N3 . DC A 1 6 ? 14.506 -7.927 -4.087 1.00 12.43 ? 6 DC A N3 1
ATOM 120 C C4 . DC A 1 6 ? 13.708 -8.112 -3.007 1.00 12.11 ? 6 DC A C4 1
ATOM 121 N N4 . DC A 1 6 ? 12.629 -7.353 -2.849 1.00 15.50 ? 6 DC A N4 1
ATOM 122 C C5 . DC A 1 6 ? 14.039 -9.148 -2.048 1.00 12.48 ? 6 DC A C5 1
ATOM 123 C C6 . DC A 1 6 ? 15.116 -9.894 -2.253 1.00 13.96 ? 6 DC A C6 1
ATOM 124 P P . DA A 1 7 ? 20.452 -9.260 -0.503 1.00 17.56 ? 7 DA A P 1
ATOM 125 O OP1 . DA A 1 7 ? 21.791 -9.702 0.009 1.00 21.80 ? 7 DA A OP1 1
ATOM 126 O OP2 . DA A 1 7 ? 19.483 -8.680 0.409 1.00 17.88 ? 7 DA A OP2 1
ATOM 127 O "O5'" . DA A 1 7 ? 20.636 -8.201 -1.634 1.00 15.68 ? 7 DA A "O5'" 1
ATOM 128 C "C5'" . DA A 1 7 ? 21.536 -8.425 -2.699 1.00 16.09 ? 7 DA A "C5'" 1
ATOM 129 C "C4'" . DA A 1 7 ? 21.476 -7.283 -3.677 1.00 17.16 ? 7 DA A "C4'" 1
ATOM 130 O "O4'" . DA A 1 7 ? 20.156 -7.243 -4.276 1.00 16.39 ? 7 DA A "O4'" 1
ATOM 131 C "C3'" . DA A 1 7 ? 21.598 -5.880 -3.117 1.00 14.76 ? 7 DA A "C3'" 1
ATOM 132 O "O3'" . DA A 1 7 ? 23.032 -5.554 -3.027 1.00 18.43 ? 7 DA A "O3'" 1
ATOM 133 C "C2'" . DA A 1 7 ? 20.913 -4.990 -4.129 1.00 12.64 ? 7 DA A "C2'" 1
ATOM 134 C "C1'" . DA A 1 7 ? 19.740 -5.883 -4.499 1.00 14.62 ? 7 DA A "C1'" 1
ATOM 135 N N9 . DA A 1 7 ? 18.480 -5.703 -3.744 1.00 12.30 ? 7 DA A N9 1
ATOM 136 C C8 . DA A 1 7 ? 18.007 -6.410 -2.694 1.00 13.00 ? 7 DA A C8 1
ATOM 137 N N7 . DA A 1 7 ? 16.818 -6.037 -2.319 1.00 12.31 ? 7 DA A N7 1
ATOM 138 C C5 . DA A 1 7 ? 16.485 -4.989 -3.196 1.00 12.56 ? 7 DA A C5 1
ATOM 139 C C6 . DA A 1 7 ? 15.330 -4.184 -3.367 1.00 13.03 ? 7 DA A C6 1
ATOM 140 N N6 . DA A 1 7 ? 14.251 -4.336 -2.593 1.00 12.49 ? 7 DA A N6 1
ATOM 141 N N1 . DA A 1 7 ? 15.393 -3.273 -4.392 1.00 13.95 ? 7 DA A N1 1
ATOM 142 C C2 . DA A 1 7 ? 16.471 -3.142 -5.184 1.00 12.16 ? 7 DA A C2 1
ATOM 143 N N3 . DA A 1 7 ? 17.566 -3.880 -5.114 1.00 12.42 ? 7 DA A N3 1
ATOM 144 C C4 . DA A 1 7 ? 17.485 -4.803 -4.149 1.00 12.68 ? 7 DA A C4 1
ATOM 145 P P . DC A 1 8 ? 23.549 -4.542 -1.924 1.00 19.74 ? 8 DC A P 1
ATOM 146 O OP1 . DC A 1 8 ? 25.020 -4.604 -2.154 1.00 22.28 ? 8 DC A OP1 1
ATOM 147 O OP2 . DC A 1 8 ? 23.012 -4.969 -0.647 1.00 24.39 ? 8 DC A OP2 1
ATOM 148 O "O5'" . DC A 1 8 ? 22.979 -3.162 -2.299 1.00 17.68 ? 8 DC A "O5'" 1
ATOM 149 C "C5'" . DC A 1 8 ? 23.420 -2.477 -3.419 1.00 17.10 ? 8 DC A "C5'" 1
ATOM 150 C "C4'" . DC A 1 8 ? 22.670 -1.204 -3.755 1.00 17.81 ? 8 DC A "C4'" 1
ATOM 151 O "O4'" . DC A 1 8 ? 21.267 -1.544 -3.792 1.00 19.48 ? 8 DC A "O4'" 1
ATOM 152 C "C3'" . DC A 1 8 ? 22.827 -0.192 -2.625 1.00 20.44 ? 8 DC A "C3'" 1
ATOM 153 O "O3'" . DC A 1 8 ? 23.067 1.026 -3.314 1.00 28.03 ? 8 DC A "O3'" 1
ATOM 154 C "C2'" . DC A 1 8 ? 21.526 -0.124 -1.839 1.00 20.76 ? 8 DC A "C2'" 1
ATOM 155 C "C1'" . DC A 1 8 ? 20.575 -0.611 -2.964 1.00 19.03 ? 8 DC A "C1'" 1
ATOM 156 N N1 . DC A 1 8 ? 19.393 -1.258 -2.373 1.00 15.37 ? 8 DC A N1 1
ATOM 157 C C2 . DC A 1 8 ? 18.065 -0.798 -2.655 1.00 15.49 ? 8 DC A C2 1
ATOM 158 O O2 . DC A 1 8 ? 17.868 0.136 -3.417 1.00 19.58 ? 8 DC A O2 1
ATOM 159 N N3 . DC A 1 8 ? 17.113 -1.459 -1.921 1.00 12.05 ? 8 DC A N3 1
ATOM 160 C C4 . DC A 1 8 ? 17.337 -2.456 -1.131 1.00 2.00 ? 8 DC A C4 1
ATOM 161 N N4 . DC A 1 8 ? 16.300 -2.932 -0.521 1.00 12.63 ? 8 DC A N4 1
ATOM 162 C C5 . DC A 1 8 ? 18.605 -2.976 -0.935 1.00 11.52 ? 8 DC A C5 1
ATOM 163 C C6 . DC A 1 8 ? 19.633 -2.342 -1.611 1.00 14.50 ? 8 DC A C6 1
HETATM 164 PT PT . PT B 2 . ? 5.804 -9.715 -3.190 0.25 33.95 ? 101 PT A PT 1
HETATM 165 O O . HOH C 3 . ? -0.901 -6.150 -9.464 1.00 25.46 ? 201 HOH A O 1
HETATM 166 O O . HOH C 3 . ? 1.676 -10.141 -12.830 1.00 19.33 ? 202 HOH A O 1
HETATM 167 O O . HOH C 3 . ? 14.751 -14.322 -4.753 1.00 17.61 ? 203 HOH A O 1
HETATM 168 O O . HOH C 3 . ? -0.314 -17.352 -6.039 1.00 23.66 ? 204 HOH A O 1
HETATM 169 O O . HOH C 3 . ? -4.882 -4.603 -6.886 1.00 25.80 ? 205 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 19.877 -2.557 -6.263 1.00 22.00 ? 206 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 19.282 -5.919 0.964 1.00 25.89 ? 207 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 16.934 -15.418 -3.390 1.00 25.24 ? 208 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 15.305 -6.498 -0.021 1.00 24.46 ? 209 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 13.241 -5.636 -0.047 1.00 26.41 ? 210 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 25.416 -0.047 -5.110 1.00 25.73 ? 211 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 5.815 -9.217 -6.808 1.00 25.84 ? 212 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 26.086 -4.349 -4.534 1.00 22.41 ? 213 HOH A O 1
HETATM 178 O O . HOH C 3 . ? -1.783 -7.005 -14.025 1.00 31.03 ? 214 HOH A O 1
HETATM 179 O O . HOH C 3 . ? -2.968 -5.315 -19.425 1.00 33.77 ? 215 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 0.325 -18.360 -1.395 1.00 28.56 ? 216 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 1.587 -18.105 -3.897 1.00 25.72 ? 217 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 4.198 -16.955 -2.673 1.00 27.95 ? 218 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 4.437 -17.668 0.098 1.00 33.33 ? 219 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 7.806 -7.853 -2.257 1.00 37.21 ? 220 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 11.163 -7.527 -0.397 1.00 24.89 ? 221 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 16.939 -8.790 1.475 1.00 34.13 ? 222 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 16.714 -7.593 -0.116 1.00 33.02 ? 223 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 26.564 -1.914 -0.788 1.00 38.21 ? 224 HOH A O 1
HETATM 189 O O . HOH C 3 . ? -3.862 -3.504 -11.058 1.00 40.22 ? 225 HOH A O 1
HETATM 190 O O . HOH C 3 . ? 3.246 -9.013 -6.104 1.00 29.57 ? 226 HOH A O 1
HETATM 191 O O . HOH C 3 . ? 0.569 -7.796 -5.493 1.00 31.10 ? 227 HOH A O 1
HETATM 192 O O . HOH C 3 . ? -4.385 -6.713 -3.237 1.00 36.31 ? 228 HOH A O 1
HETATM 193 O O . HOH C 3 . ? 3.401 -12.187 -12.857 1.00 29.61 ? 229 HOH A O 1
HETATM 194 O O . HOH C 3 . ? -3.766 -12.673 1.267 1.00 41.79 ? 230 HOH A O 1
HETATM 195 O O . HOH C 3 . ? 1.044 -9.203 -3.990 1.00 49.38 ? 231 HOH A O 1
HETATM 196 O O . HOH C 3 . ? -0.153 -16.536 0.357 1.00 51.57 ? 232 HOH A O 1
HETATM 197 O O . HOH C 3 . ? 9.947 -4.497 -2.624 1.00 35.80 ? 233 HOH A O 1
HETATM 198 O O . HOH C 3 . ? 9.264 -9.264 6.078 0.50 33.07 ? 234 HOH A O 1
HETATM 199 O O . HOH C 3 . ? 7.183 -7.615 -5.563 0.50 32.56 ? 235 HOH A O 1
HETATM 200 O O . HOH C 3 . ? 2.929 -8.722 -2.091 1.00 38.58 ? 236 HOH A O 1
#