data_4FS6
#
_entry.id 4FS6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.388
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4FS6 pdb_00004fs6 10.2210/pdb4fs6/pdb
NDB NA1881 ? ?
RCSB RCSB073288 ? ?
WWPDB D_1000073288 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2013-05-15
2 'Structure model' 1 1 2017-11-15
3 'Structure model' 1 2 2024-03-20
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Refinement description'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' software
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' database_2
5 3 'Structure model' pdbx_struct_conn_angle
6 3 'Structure model' struct_conn
7 3 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
17 3 'Structure model' '_pdbx_struct_conn_angle.value'
18 3 'Structure model' '_struct_conn.pdbx_dist_value'
19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'
25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
30 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
31 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
32 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4FS6
_pdbx_database_status.recvd_initial_deposition_date 2012-06-27
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 4fs5
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Chatake, T.' 1
'Sunami, T.' 2
#
_citation.id primary
_citation.title
'Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2'
_citation.journal_abbrev J.Inorg.Biochem.
_citation.journal_volume 124
_citation.page_first 15
_citation.page_last 25
_citation.year 2013
_citation.journal_id_ASTM JIBIDJ
_citation.country US
_citation.journal_id_ISSN 0162-0134
_citation.journal_id_CSD 0525
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 23578858
_citation.pdbx_database_id_DOI 10.1016/j.jinorgbio.2013.03.004
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Chatake, T.' 1 ?
primary 'Sunami, T.' 2 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
;
1810.205 1 ? ? ? ?
2 non-polymer syn 'CALCIUM ION' 40.078 5 ? ? ? ?
3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ?
4 water nat water 18.015 41 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGCGCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'CALCIUM ION' CA
3 'CHLORIDE ION' CL
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DC n
1 4 DG n
1 5 DC n
1 6 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Chemical synthesis'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078
CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC CYT A . n
A 1 2 DG 2 2 2 DG GUA A . n
A 1 3 DC 3 3 3 DC CYT A . n
A 1 4 DG 4 4 4 DG GUA A . n
A 1 5 DC 5 5 5 DC CYT A . n
A 1 6 DG 6 6 6 DG GUA A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA 1 101 1 CA CA A .
C 2 CA 1 102 2 CA CA A .
D 2 CA 1 103 3 CA CA A .
E 2 CA 1 104 4 CA CA A .
F 2 CA 1 105 5 CA CA A .
G 3 CL 1 106 6 CL CL A .
H 3 CL 1 107 7 CL CL A .
I 4 HOH 1 201 1 HOH HOH A .
I 4 HOH 2 202 2 HOH HOH A .
I 4 HOH 3 203 3 HOH HOH A .
I 4 HOH 4 204 4 HOH HOH A .
I 4 HOH 5 205 5 HOH HOH A .
I 4 HOH 6 206 6 HOH HOH A .
I 4 HOH 7 207 7 HOH HOH A .
I 4 HOH 8 208 8 HOH HOH A .
I 4 HOH 9 209 9 HOH HOH A .
I 4 HOH 10 210 10 HOH HOH A .
I 4 HOH 11 211 11 HOH HOH A .
I 4 HOH 12 212 12 HOH HOH A .
I 4 HOH 13 213 13 HOH HOH A .
I 4 HOH 14 214 14 HOH HOH A .
I 4 HOH 15 215 15 HOH HOH A .
I 4 HOH 16 216 16 HOH HOH A .
I 4 HOH 17 217 17 HOH HOH A .
I 4 HOH 18 218 18 HOH HOH A .
I 4 HOH 19 219 19 HOH HOH A .
I 4 HOH 20 220 20 HOH HOH A .
I 4 HOH 21 221 21 HOH HOH A .
I 4 HOH 22 222 22 HOH HOH A .
I 4 HOH 23 223 23 HOH HOH A .
I 4 HOH 24 224 24 HOH HOH A .
I 4 HOH 25 225 25 HOH HOH A .
I 4 HOH 26 226 26 HOH HOH A .
I 4 HOH 27 227 27 HOH HOH A .
I 4 HOH 28 228 28 HOH HOH A .
I 4 HOH 29 229 29 HOH HOH A .
I 4 HOH 30 230 30 HOH HOH A .
I 4 HOH 31 231 31 HOH HOH A .
I 4 HOH 32 232 32 HOH HOH A .
I 4 HOH 33 233 33 HOH HOH A .
I 4 HOH 34 234 34 HOH HOH A .
I 4 HOH 35 235 35 HOH HOH A .
I 4 HOH 36 236 36 HOH HOH A .
I 4 HOH 37 237 37 HOH HOH A .
I 4 HOH 38 238 38 HOH HOH A .
I 4 HOH 39 239 39 HOH HOH A .
I 4 HOH 40 240 40 HOH HOH A .
I 4 HOH 41 241 41 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
BSS 'data collection' . ? 1
PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 2
MOSFLM 'data reduction' . ? 3
SCALA 'data scaling' . ? 4
#
_cell.entry_id 4FS6
_cell.length_a 18.461
_cell.length_b 18.461
_cell.length_c 71.463
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4FS6
_symmetry.space_group_name_H-M 'P 32 2 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 154
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4FS6
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.94
_exptl_crystal.density_percent_sol 36.66
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'TEMPERATURE CONTROL'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
'2.0mM DNA, 20mM Na cacodylate, 30% 2-methyl-2,4-pentanediol, 500mM CaCl2, pH 7.0, TEMPERATURE CONTROL, temperature 293K'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2008-02-13
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Fixed exit Si (111) double crystal monochromator'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'SPRING-8 BEAMLINE BL38B1'
_diffrn_source.pdbx_synchrotron_site SPring-8
_diffrn_source.pdbx_synchrotron_beamline BL38B1
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1
#
_reflns.entry_id 4FS6
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 36
_reflns.d_resolution_high 1.3
_reflns.number_obs 3859
_reflns.number_all 3879
_reflns.percent_possible_obs 99.2
_reflns.pdbx_Rmerge_I_obs 0.072
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate 7.49
_reflns.pdbx_redundancy 6.6
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.3
_reflns_shell.d_res_low 1.47
_reflns_shell.percent_possible_all 99.7
_reflns_shell.Rmerge_I_obs 0.051
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy 8.2
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 539
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.number_possible ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4FS6
_refine.ls_number_reflns_obs 3832
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.92
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 23.821
_refine.ls_d_res_high 1.300
_refine.ls_percent_reflns_obs 98.79
_refine.ls_R_factor_obs 0.1951
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.1895
_refine.ls_R_factor_R_free 0.2300
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.38
_refine.ls_number_reflns_R_free 168
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 12.7200
_refine.aniso_B[1][1] 0.5118
_refine.aniso_B[2][2] 0.5118
_refine.aniso_B[3][3] -1.0236
_refine.aniso_B[1][2] -0.0000
_refine.aniso_B[1][3] -0.0000
_refine.aniso_B[2][3] 0.0000
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.solvent_model_param_ksol 0.600
_refine.solvent_model_param_bsol 71.397
_refine.pdbx_solvent_vdw_probe_radii 0.30
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.00
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values TWIN_LSQ_F
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_FOM_work_R_set 0.7962
_refine.B_iso_max 80.370
_refine.B_iso_min 1.260
_refine.pdbx_overall_phase_error 25.9100
_refine.occupancy_max 1.000
_refine.occupancy_min 0.250
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 7
_refine_hist.number_atoms_solvent 41
_refine_hist.number_atoms_total 168
_refine_hist.d_res_high 1.300
_refine_hist.d_res_low 23.821
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' f_bond_d 134 0.014 ? ? ?
'X-RAY DIFFRACTION' f_angle_d 205 1.862 ? ? ?
'X-RAY DIFFRACTION' f_chiral_restr 23 0.073 ? ? ?
'X-RAY DIFFRACTION' f_plane_restr 6 0.006 ? ? ?
'X-RAY DIFFRACTION' f_dihedral_angle_d 56 29.929 ? ? ?
#
_refine_ls_shell.d_res_high 1.3002
_refine_ls_shell.d_res_low 13.2757
_refine_ls_shell.pdbx_total_number_of_bins_used 1
_refine_ls_shell.percent_reflns_obs 94.0000
_refine_ls_shell.number_reflns_R_work 3654
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.1932
_refine_ls_shell.R_factor_R_free 0.2323
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 168
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 3822
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.redundancy_reflns_obs ?
#
_database_PDB_matrix.entry_id 4FS6
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4FS6
_struct.title 'Crystal structure of the Z-DNA hexamer CGCGCG at 500 mM CaCl2'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4FS6
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-DNA, Ca2+ binding, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 2 ?
E N N 2 ?
F N N 2 ?
G N N 3 ?
H N N 3 ?
I N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4FS6
_struct_ref.pdbx_db_accession 4FS6
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4FS6
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4FS6
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1760 ?
1 MORE -101 ?
1 'SSA (A^2)' 2600 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DG 2 OP1 ? ? ? 1_555 B CA . CA ? ? A DG 2 A CA 101 1_555 ? ? ? ? ? ? ? 2.536 ? ?
metalc2 metalc ? ? A DG 2 OP2 ? ? ? 1_555 C CA . CA ? ? A DG 2 A CA 102 1_555 ? ? ? ? ? ? ? 2.436 ? ?
metalc3 metalc ? ? A DC 3 OP1 ? ? ? 1_555 D CA . CA ? ? A DC 3 A CA 103 1_555 ? ? ? ? ? ? ? 2.315 ? ?
metalc4 metalc ? ? A DC 3 OP2 ? ? ? 1_555 E CA . CA ? ? A DC 3 A CA 104 1_555 ? ? ? ? ? ? ? 2.321 ? ?
metalc5 metalc ? ? A DC 3 "O3'" ? ? ? 1_555 F CA . CA ? ? A DC 3 A CA 105 1_555 ? ? ? ? ? ? ? 3.147 ? ?
metalc6 metalc ? ? A DG 4 OP2 ? ? ? 1_555 F CA . CA ? ? A DG 4 A CA 105 1_555 ? ? ? ? ? ? ? 2.541 ? ?
metalc7 metalc ? ? B CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.383 ? ?
metalc8 metalc ? ? B CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.761 ? ?
metalc9 metalc ? ? B CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 101 A HOH 203 1_555 ? ? ? ? ? ? ? 2.179 ? ?
metalc10 metalc ? ? B CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 101 A HOH 204 1_555 ? ? ? ? ? ? ? 2.502 ? ?
metalc11 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 205 1_555 ? ? ? ? ? ? ? 2.596 ? ?
metalc12 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.108 ? ?
metalc13 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 207 1_555 ? ? ? ? ? ? ? 2.610 ? ?
metalc14 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 208 1_555 ? ? ? ? ? ? ? 2.051 ? ?
metalc15 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 209 1_555 ? ? ? ? ? ? ? 2.160 ? ?
metalc16 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 210 1_555 ? ? ? ? ? ? ? 2.529 ? ?
metalc17 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.310 ? ?
metalc18 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 212 1_555 ? ? ? ? ? ? ? 2.301 ? ?
metalc19 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 213 1_555 ? ? ? ? ? ? ? 2.245 ? ?
metalc20 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 214 1_555 ? ? ? ? ? ? ? 2.411 ? ?
metalc21 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 215 1_555 ? ? ? ? ? ? ? 2.672 ? ?
metalc22 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 216 1_555 ? ? ? ? ? ? ? 2.704 ? ?
metalc23 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 217 1_555 ? ? ? ? ? ? ? 2.470 ? ?
metalc24 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 218 1_555 ? ? ? ? ? ? ? 2.227 ? ?
metalc25 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 219 1_555 ? ? ? ? ? ? ? 2.470 ? ?
metalc26 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 220 1_555 ? ? ? ? ? ? ? 2.369 ? ?
metalc27 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 221 1_555 ? ? ? ? ? ? ? 2.359 ? ?
metalc28 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 222 1_555 ? ? ? ? ? ? ? 2.350 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 3 A DG 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 3 A DG 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 3 A DG 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 4 A DC 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 4 A DC 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 4 A DC 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 201 ? 1_555 163.1 ?
2 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 78.3 ?
3 O ? I HOH . ? A HOH 201 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 202 ? 1_555 99.4 ?
4 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 85.4 ?
5 O ? I HOH . ? A HOH 201 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 78.2 ?
6 O ? I HOH . ? A HOH 202 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 69.9 ?
7 OP1 ? A DG 2 ? A DG 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 99.5 ?
8 O ? I HOH . ? A HOH 201 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 97.3 ?
9 O ? I HOH . ? A HOH 202 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 93.7 ?
10 O ? I HOH . ? A HOH 203 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 161.7 ?
11 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 205 ? 1_555 79.9 ?
12 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 110.8 ?
13 O ? I HOH . ? A HOH 205 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 105.5 ?
14 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 147.0 ?
15 O ? I HOH . ? A HOH 205 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 124.6 ?
16 O ? I HOH . ? A HOH 206 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 207 ? 1_555 85.4 ?
17 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 130.8 ?
18 O ? I HOH . ? A HOH 205 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 56.5 ?
19 O ? I HOH . ? A HOH 206 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 66.5 ?
20 O ? I HOH . ? A HOH 207 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 208 ? 1_555 81.7 ?
21 OP2 ? A DG 2 ? A DG 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 77.4 ?
22 O ? I HOH . ? A HOH 205 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 155.3 ?
23 O ? I HOH . ? A HOH 206 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 91.6 ?
24 O ? I HOH . ? A HOH 207 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 73.5 ?
25 O ? I HOH . ? A HOH 208 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? I HOH . ? A HOH 209 ? 1_555 148.2 ?
26 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 174.4 ?
27 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 89.0 ?
28 O ? I HOH . ? A HOH 210 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 91.3 ?
29 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 88.7 ?
30 O ? I HOH . ? A HOH 210 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 85.8 ?
31 O ? I HOH . ? A HOH 211 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 102.6 ?
32 OP1 ? A DC 3 ? A DC 3 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 95.8 ?
33 O ? I HOH . ? A HOH 210 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 89.8 ?
34 O ? I HOH . ? A HOH 211 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 83.4 ?
35 O ? I HOH . ? A HOH 212 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 213 ? 1_555 172.7 ?
36 OP2 ? A DC 3 ? A DC 3 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 110.0 ?
37 OP2 ? A DC 3 ? A DC 3 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 215 ? 1_555 152.4 ?
38 O ? I HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 215 ? 1_555 77.9 ?
39 OP2 ? A DC 3 ? A DC 3 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 125.8 ?
40 O ? I HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 107.7 ?
41 O ? I HOH . ? A HOH 215 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 72.8 ?
42 OP2 ? A DC 3 ? A DC 3 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 73.2 ?
43 O ? I HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 80.8 ?
44 O ? I HOH . ? A HOH 215 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 134.3 ?
45 O ? I HOH . ? A HOH 216 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 76.1 ?
46 OP2 ? A DC 3 ? A DC 3 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 84.5 ?
47 O ? I HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 79.3 ?
48 O ? I HOH . ? A HOH 215 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 70.7 ?
49 O ? I HOH . ? A HOH 216 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 140.3 ?
50 O ? I HOH . ? A HOH 217 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 218 ? 1_555 142.7 ?
51 "O3'" ? A DC 3 ? A DC 3 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 OP2 ? A DG 4 ? A DG 4 ? 1_555 50.4 ?
52 "O3'" ? A DC 3 ? A DC 3 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 219 ? 1_555 67.2 ?
53 OP2 ? A DG 4 ? A DG 4 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 219 ? 1_555 82.3 ?
54 "O3'" ? A DC 3 ? A DC 3 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 155.0 ?
55 OP2 ? A DG 4 ? A DG 4 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 137.2 ?
56 O ? I HOH . ? A HOH 219 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 220 ? 1_555 131.3 ?
57 "O3'" ? A DC 3 ? A DC 3 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 84.1 ?
58 OP2 ? A DG 4 ? A DG 4 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 134.5 ?
59 O ? I HOH . ? A HOH 219 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 79.8 ?
60 O ? I HOH . ? A HOH 220 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 221 ? 1_555 83.6 ?
61 "O3'" ? A DC 3 ? A DC 3 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 66.8 ?
62 OP2 ? A DG 4 ? A DG 4 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 85.8 ?
63 O ? I HOH . ? A HOH 219 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 128.5 ?
64 O ? I HOH . ? A HOH 220 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 88.9 ?
65 O ? I HOH . ? A HOH 221 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 222 ? 1_555 73.8 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A CA 101 ? 6 'BINDING SITE FOR RESIDUE CA A 101'
AC2 Software A CA 102 ? 7 'BINDING SITE FOR RESIDUE CA A 102'
AC3 Software A CA 103 ? 6 'BINDING SITE FOR RESIDUE CA A 103'
AC4 Software A CA 104 ? 7 'BINDING SITE FOR RESIDUE CA A 104'
AC5 Software A CA 105 ? 8 'BINDING SITE FOR RESIDUE CA A 105'
AC6 Software A CL 106 ? 3 'BINDING SITE FOR RESIDUE CL A 106'
AC7 Software A CL 107 ? 5 'BINDING SITE FOR RESIDUE CL A 107'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 6 DG A 2 ? DG A 2 . ? 1_555 ?
2 AC1 6 DC A 5 ? DC A 5 . ? 4_565 ?
3 AC1 6 HOH I . ? HOH A 201 . ? 1_555 ?
4 AC1 6 HOH I . ? HOH A 202 . ? 1_555 ?
5 AC1 6 HOH I . ? HOH A 203 . ? 1_555 ?
6 AC1 6 HOH I . ? HOH A 204 . ? 1_555 ?
7 AC2 7 DG A 2 ? DG A 2 . ? 1_555 ?
8 AC2 7 DC A 5 ? DC A 5 . ? 4_565 ?
9 AC2 7 HOH I . ? HOH A 205 . ? 1_555 ?
10 AC2 7 HOH I . ? HOH A 206 . ? 1_555 ?
11 AC2 7 HOH I . ? HOH A 207 . ? 1_555 ?
12 AC2 7 HOH I . ? HOH A 208 . ? 1_555 ?
13 AC2 7 HOH I . ? HOH A 209 . ? 1_555 ?
14 AC3 6 DC A 3 ? DC A 3 . ? 1_555 ?
15 AC3 6 DG A 4 ? DG A 4 . ? 4_565 ?
16 AC3 6 HOH I . ? HOH A 210 . ? 1_555 ?
17 AC3 6 HOH I . ? HOH A 211 . ? 1_555 ?
18 AC3 6 HOH I . ? HOH A 212 . ? 1_555 ?
19 AC3 6 HOH I . ? HOH A 213 . ? 1_555 ?
20 AC4 7 DC A 3 ? DC A 3 . ? 1_555 ?
21 AC4 7 DG A 4 ? DG A 4 . ? 4_565 ?
22 AC4 7 HOH I . ? HOH A 214 . ? 1_555 ?
23 AC4 7 HOH I . ? HOH A 215 . ? 1_555 ?
24 AC4 7 HOH I . ? HOH A 216 . ? 1_555 ?
25 AC4 7 HOH I . ? HOH A 217 . ? 1_555 ?
26 AC4 7 HOH I . ? HOH A 218 . ? 1_555 ?
27 AC5 8 DC A 3 ? DC A 3 . ? 1_555 ?
28 AC5 8 DG A 4 ? DG A 4 . ? 1_555 ?
29 AC5 8 HOH I . ? HOH A 215 . ? 4_455 ?
30 AC5 8 HOH I . ? HOH A 216 . ? 4_455 ?
31 AC5 8 HOH I . ? HOH A 219 . ? 1_555 ?
32 AC5 8 HOH I . ? HOH A 220 . ? 1_555 ?
33 AC5 8 HOH I . ? HOH A 221 . ? 1_555 ?
34 AC5 8 HOH I . ? HOH A 222 . ? 1_555 ?
35 AC6 3 DG A 2 ? DG A 2 . ? 1_555 ?
36 AC6 3 DC A 3 ? DC A 3 . ? 1_555 ?
37 AC6 3 HOH I . ? HOH A 209 . ? 1_555 ?
38 AC7 5 DG A 4 ? DG A 4 . ? 1_555 ?
39 AC7 5 DC A 5 ? DC A 5 . ? 1_555 ?
40 AC7 5 HOH I . ? HOH A 216 . ? 4_455 ?
41 AC7 5 HOH I . ? HOH A 220 . ? 4_555 ?
42 AC7 5 HOH I . ? HOH A 222 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.24 108.30 2.94 0.30 N
2 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.08 108.30 4.78 0.30 N
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 230 ? I HOH .
2 1 A HOH 239 ? I HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CA CA CA N N 1
CL CL CL N N 2
DC OP3 O N N 3
DC P P N N 4
DC OP1 O N N 5
DC OP2 O N N 6
DC "O5'" O N N 7
DC "C5'" C N N 8
DC "C4'" C N R 9
DC "O4'" O N N 10
DC "C3'" C N S 11
DC "O3'" O N N 12
DC "C2'" C N N 13
DC "C1'" C N R 14
DC N1 N N N 15
DC C2 C N N 16
DC O2 O N N 17
DC N3 N N N 18
DC C4 C N N 19
DC N4 N N N 20
DC C5 C N N 21
DC C6 C N N 22
DC HOP3 H N N 23
DC HOP2 H N N 24
DC "H5'" H N N 25
DC "H5''" H N N 26
DC "H4'" H N N 27
DC "H3'" H N N 28
DC "HO3'" H N N 29
DC "H2'" H N N 30
DC "H2''" H N N 31
DC "H1'" H N N 32
DC H41 H N N 33
DC H42 H N N 34
DC H5 H N N 35
DC H6 H N N 36
DG OP3 O N N 37
DG P P N N 38
DG OP1 O N N 39
DG OP2 O N N 40
DG "O5'" O N N 41
DG "C5'" C N N 42
DG "C4'" C N R 43
DG "O4'" O N N 44
DG "C3'" C N S 45
DG "O3'" O N N 46
DG "C2'" C N N 47
DG "C1'" C N R 48
DG N9 N Y N 49
DG C8 C Y N 50
DG N7 N Y N 51
DG C5 C Y N 52
DG C6 C N N 53
DG O6 O N N 54
DG N1 N N N 55
DG C2 C N N 56
DG N2 N N N 57
DG N3 N N N 58
DG C4 C Y N 59
DG HOP3 H N N 60
DG HOP2 H N N 61
DG "H5'" H N N 62
DG "H5''" H N N 63
DG "H4'" H N N 64
DG "H3'" H N N 65
DG "HO3'" H N N 66
DG "H2'" H N N 67
DG "H2''" H N N 68
DG "H1'" H N N 69
DG H8 H N N 70
DG H1 H N N 71
DG H21 H N N 72
DG H22 H N N 73
HOH O O N N 74
HOH H1 H N N 75
HOH H2 H N N 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DC OP3 P sing N N 1
DC OP3 HOP3 sing N N 2
DC P OP1 doub N N 3
DC P OP2 sing N N 4
DC P "O5'" sing N N 5
DC OP2 HOP2 sing N N 6
DC "O5'" "C5'" sing N N 7
DC "C5'" "C4'" sing N N 8
DC "C5'" "H5'" sing N N 9
DC "C5'" "H5''" sing N N 10
DC "C4'" "O4'" sing N N 11
DC "C4'" "C3'" sing N N 12
DC "C4'" "H4'" sing N N 13
DC "O4'" "C1'" sing N N 14
DC "C3'" "O3'" sing N N 15
DC "C3'" "C2'" sing N N 16
DC "C3'" "H3'" sing N N 17
DC "O3'" "HO3'" sing N N 18
DC "C2'" "C1'" sing N N 19
DC "C2'" "H2'" sing N N 20
DC "C2'" "H2''" sing N N 21
DC "C1'" N1 sing N N 22
DC "C1'" "H1'" sing N N 23
DC N1 C2 sing N N 24
DC N1 C6 sing N N 25
DC C2 O2 doub N N 26
DC C2 N3 sing N N 27
DC N3 C4 doub N N 28
DC C4 N4 sing N N 29
DC C4 C5 sing N N 30
DC N4 H41 sing N N 31
DC N4 H42 sing N N 32
DC C5 C6 doub N N 33
DC C5 H5 sing N N 34
DC C6 H6 sing N N 35
DG OP3 P sing N N 36
DG OP3 HOP3 sing N N 37
DG P OP1 doub N N 38
DG P OP2 sing N N 39
DG P "O5'" sing N N 40
DG OP2 HOP2 sing N N 41
DG "O5'" "C5'" sing N N 42
DG "C5'" "C4'" sing N N 43
DG "C5'" "H5'" sing N N 44
DG "C5'" "H5''" sing N N 45
DG "C4'" "O4'" sing N N 46
DG "C4'" "C3'" sing N N 47
DG "C4'" "H4'" sing N N 48
DG "O4'" "C1'" sing N N 49
DG "C3'" "O3'" sing N N 50
DG "C3'" "C2'" sing N N 51
DG "C3'" "H3'" sing N N 52
DG "O3'" "HO3'" sing N N 53
DG "C2'" "C1'" sing N N 54
DG "C2'" "H2'" sing N N 55
DG "C2'" "H2''" sing N N 56
DG "C1'" N9 sing N N 57
DG "C1'" "H1'" sing N N 58
DG N9 C8 sing Y N 59
DG N9 C4 sing Y N 60
DG C8 N7 doub Y N 61
DG C8 H8 sing N N 62
DG N7 C5 sing Y N 63
DG C5 C6 sing N N 64
DG C5 C4 doub Y N 65
DG C6 O6 doub N N 66
DG C6 N1 sing N N 67
DG N1 C2 sing N N 68
DG N1 H1 sing N N 69
DG C2 N2 sing N N 70
DG C2 N3 doub N N 71
DG N2 H21 sing N N 72
DG N2 H22 sing N N 73
DG N3 C4 sing N N 74
HOH O H1 sing N N 75
HOH O H2 sing N N 76
#
_ndb_struct_conf_na.entry_id 4FS6
_ndb_struct_conf_na.feature 'z-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 4_555 -0.098 -0.442 0.159 0.645 -9.152 1.537 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 4_555 0.327 -0.150 -0.324 -11.675 4.032 1.685 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DC 3 1_555 A DG 4 4_555 -0.380 -0.150 0.131 0.502 -8.370 -0.697 3 A_DC3:DG4_A A 3 ? A 4 ? 19 1
1 A DG 4 1_555 A DC 3 4_555 0.380 -0.150 0.131 -0.502 -8.370 -0.697 4 A_DG4:DC3_A A 4 ? A 3 ? 19 1
1 A DC 5 1_555 A DG 2 4_555 -0.327 -0.150 -0.324 11.675 4.032 1.685 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 4_555 0.098 -0.442 0.159 -0.645 -9.152 1.537 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 4_555 A DG 2 1_555 A DC 5 4_555 0.326 5.463 3.805 3.173 -4.362 -8.099 -18.804 11.679 5.508 27.258
19.825 -9.728 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 4_555 A DC 3 1_555 A DG 4 4_555 -0.273 -1.044 3.076 -4.105 -4.657 -48.401 1.592 -0.620 2.939 5.653
-4.983 -48.774 2 AA_DG2DC3:DG4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DC 3 1_555 A DG 4 4_555 A DG 4 1_555 A DC 3 4_555 0.000 5.386 3.521 0.000 -5.996 -12.060 -13.926 0.000 5.545 26.497 0.000
-13.463 3 AA_DC3DG4:DC3DG4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DG 4 1_555 A DC 3 4_555 A DC 5 1_555 A DG 2 4_555 0.273 -1.044 3.076 4.105 -4.657 -48.401 1.592 0.620 2.939 5.653 4.983
-48.774 4 AA_DG4DC5:DG2DC3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 4_555 A DG 6 1_555 A DC 1 4_555 -0.326 5.463 3.805 -3.173 -4.362 -8.099 -18.804 -11.679 5.508 27.258
-19.825 -9.728 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_pdbx_reflns_twin.domain_id 1
_pdbx_reflns_twin.crystal_id 1
_pdbx_reflns_twin.diffrn_id 1
_pdbx_reflns_twin.fraction 0.310
_pdbx_reflns_twin.operator -h,-k,l
_pdbx_reflns_twin.type ?
#
_atom_sites.entry_id 4FS6
_atom_sites.fract_transf_matrix[1][1] 0.054168
_atom_sites.fract_transf_matrix[1][2] 0.031274
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.062548
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.013993
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CA
CL
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 1.529 9.506 9.096 1.00 20.92 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 1.296 9.229 7.700 1.00 18.43 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 0.399 8.014 7.564 1.00 15.31 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 1.201 6.806 7.447 1.00 15.05 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? -0.554 7.802 8.748 1.00 13.33 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? -1.783 7.376 8.231 1.00 12.71 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 0.040 6.624 9.505 1.00 14.38 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 0.641 5.833 8.328 1.00 15.48 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 1.683 4.855 8.792 1.00 15.37 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 1.352 3.513 9.095 1.00 13.69 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 0.183 3.115 8.950 1.00 12.17 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 2.343 2.678 9.531 1.00 12.98 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 3.589 3.111 9.685 1.00 11.80 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 4.514 2.247 10.120 1.00 11.04 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 3.938 4.466 9.399 1.00 14.55 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 2.973 5.289 8.961 1.00 15.68 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? -3.027 8.398 8.122 1.00 8.85 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? -2.993 9.277 9.310 1.00 9.35 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? -4.224 7.601 7.903 1.00 10.23 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? -2.778 9.148 6.718 1.00 9.32 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? -2.608 8.411 5.535 1.00 9.07 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? -2.138 9.390 4.472 1.00 7.95 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? -0.830 9.926 4.795 1.00 6.25 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? -2.058 8.809 3.071 1.00 7.24 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? -3.266 9.298 2.514 1.00 6.20 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? -0.797 9.423 2.468 1.00 6.21 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 0.012 9.929 3.663 1.00 6.24 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 1.212 9.156 4.015 1.00 8.12 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 2.494 9.662 4.133 1.00 9.01 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 3.372 8.755 4.467 1.00 10.88 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 2.629 7.573 4.595 1.00 10.66 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 3.030 6.252 4.940 1.00 12.03 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 4.172 5.861 5.212 1.00 14.51 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 1.961 5.343 4.952 1.00 10.47 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 0.642 5.678 4.662 1.00 10.62 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? -0.296 4.704 4.696 1.00 10.38 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 0.265 6.909 4.338 1.00 10.82 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 1.296 7.805 4.319 1.00 9.20 ? 2 DG A C4 1
ATOM 39 P P . DC A 1 3 ? -3.667 8.956 1.003 1.00 6.57 ? 3 DC A P 1
ATOM 40 O OP1 . DC A 1 3 ? -2.739 9.645 0.128 1.00 8.84 ? 3 DC A OP1 1
ATOM 41 O OP2 . DC A 1 3 ? -5.096 9.230 0.851 1.00 8.23 ? 3 DC A OP2 1
ATOM 42 O "O5'" . DC A 1 3 ? -3.523 7.354 0.917 1.00 7.41 ? 3 DC A "O5'" 1
ATOM 43 C "C5'" . DC A 1 3 ? -3.779 6.599 -0.327 1.00 4.65 ? 3 DC A "C5'" 1
ATOM 44 C "C4'" . DC A 1 3 ? -3.227 5.158 -0.257 1.00 5.14 ? 3 DC A "C4'" 1
ATOM 45 O "O4'" . DC A 1 3 ? -1.785 5.156 -0.445 1.00 3.65 ? 3 DC A "O4'" 1
ATOM 46 C "C3'" . DC A 1 3 ? -3.468 4.407 1.077 1.00 4.34 ? 3 DC A "C3'" 1
ATOM 47 O "O3'" . DC A 1 3 ? -3.699 3.038 0.814 1.00 4.81 ? 3 DC A "O3'" 1
ATOM 48 C "C2'" . DC A 1 3 ? -2.153 4.537 1.843 1.00 4.00 ? 3 DC A "C2'" 1
ATOM 49 C "C1'" . DC A 1 3 ? -1.188 4.444 0.635 1.00 4.33 ? 3 DC A "C1'" 1
ATOM 50 N N1 . DC A 1 3 ? 0.213 4.914 0.952 1.00 3.57 ? 3 DC A N1 1
ATOM 51 C C2 . DC A 1 3 ? 1.186 3.988 1.395 1.00 3.72 ? 3 DC A C2 1
ATOM 52 O O2 . DC A 1 3 ? 0.884 2.803 1.495 1.00 3.64 ? 3 DC A O2 1
ATOM 53 N N3 . DC A 1 3 ? 2.429 4.408 1.708 1.00 3.11 ? 3 DC A N3 1
ATOM 54 C C4 . DC A 1 3 ? 2.717 5.698 1.598 1.00 3.33 ? 3 DC A C4 1
ATOM 55 N N4 . DC A 1 3 ? 3.964 6.079 1.903 1.00 4.86 ? 3 DC A N4 1
ATOM 56 C C5 . DC A 1 3 ? 1.759 6.670 1.159 1.00 3.71 ? 3 DC A C5 1
ATOM 57 C C6 . DC A 1 3 ? 0.523 6.249 0.858 1.00 3.33 ? 3 DC A C6 1
ATOM 58 P P . DG A 1 4 ? -5.206 2.449 0.729 1.00 5.58 ? 4 DG A P 1
ATOM 59 O OP1 . DG A 1 4 ? -6.028 3.079 1.811 1.00 5.22 ? 4 DG A OP1 1
ATOM 60 O OP2 . DG A 1 4 ? -5.092 0.984 0.712 1.00 6.96 ? 4 DG A OP2 1
ATOM 61 O "O5'" . DG A 1 4 ? -5.718 2.919 -0.731 1.00 5.58 ? 4 DG A "O5'" 1
ATOM 62 C "C5'" . DG A 1 4 ? -4.926 2.586 -1.833 1.00 6.86 ? 4 DG A "C5'" 1
ATOM 63 C "C4'" . DG A 1 4 ? -5.566 3.093 -3.122 1.00 7.68 ? 4 DG A "C4'" 1
ATOM 64 O "O4'" . DG A 1 4 ? -5.529 4.547 -3.200 1.00 7.95 ? 4 DG A "O4'" 1
ATOM 65 C "C3'" . DG A 1 4 ? -4.987 2.516 -4.423 1.00 7.38 ? 4 DG A "C3'" 1
ATOM 66 O "O3'" . DG A 1 4 ? -5.996 1.597 -4.894 1.00 7.83 ? 4 DG A "O3'" 1
ATOM 67 C "C2'" . DG A 1 4 ? -4.754 3.725 -5.328 1.00 6.25 ? 4 DG A "C2'" 1
ATOM 68 C "C1'" . DG A 1 4 ? -4.940 4.948 -4.431 1.00 6.70 ? 4 DG A "C1'" 1
ATOM 69 N N9 . DG A 1 4 ? -3.713 5.661 -4.075 1.00 7.09 ? 4 DG A N9 1
ATOM 70 C C8 . DG A 1 4 ? -3.569 7.038 -4.070 1.00 7.88 ? 4 DG A C8 1
ATOM 71 N N7 . DG A 1 4 ? -2.382 7.442 -3.703 1.00 6.08 ? 4 DG A N7 1
ATOM 72 C C5 . DG A 1 4 ? -1.675 6.269 -3.420 1.00 5.89 ? 4 DG A C5 1
ATOM 73 C C6 . DG A 1 4 ? -0.334 6.085 -2.955 1.00 5.34 ? 4 DG A C6 1
ATOM 74 O O6 . DG A 1 4 ? 0.536 6.939 -2.690 1.00 4.89 ? 4 DG A O6 1
ATOM 75 N N1 . DG A 1 4 ? -0.031 4.726 -2.796 1.00 4.06 ? 4 DG A N1 1
ATOM 76 C C2 . DG A 1 4 ? -0.906 3.689 -3.044 1.00 4.43 ? 4 DG A C2 1
ATOM 77 N N2 . DG A 1 4 ? -0.423 2.450 -2.833 1.00 4.05 ? 4 DG A N2 1
ATOM 78 N N3 . DG A 1 4 ? -2.163 3.850 -3.475 1.00 5.51 ? 4 DG A N3 1
ATOM 79 C C4 . DG A 1 4 ? -2.488 5.160 -3.641 1.00 6.61 ? 4 DG A C4 1
ATOM 80 P P . DC A 1 5 ? -5.834 0.830 -6.300 1.00 9.30 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? -5.975 1.803 -7.376 1.00 6.78 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? -6.700 -0.360 -6.265 1.00 8.46 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? -4.330 0.286 -6.271 1.00 11.13 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? -3.904 -0.531 -7.381 1.00 11.92 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? -2.427 -0.879 -7.274 1.00 12.46 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? -1.659 0.291 -7.654 1.00 12.40 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? -1.969 -1.325 -5.872 1.00 14.82 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? -1.041 -2.424 -5.983 1.00 18.61 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? -1.311 -0.072 -5.306 1.00 14.23 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? -0.738 0.534 -6.596 1.00 12.96 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? -0.480 1.986 -6.494 1.00 12.02 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 0.703 2.398 -5.884 1.00 10.60 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 1.469 1.522 -5.476 1.00 9.63 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 0.948 3.728 -5.779 1.00 10.41 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 0.067 4.614 -6.247 1.00 9.23 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 0.336 5.907 -6.119 1.00 7.98 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? -1.151 4.208 -6.865 1.00 10.51 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? -1.380 2.895 -6.965 1.00 11.84 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? -1.571 -3.948 -5.947 1.00 22.08 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? -2.470 -4.077 -4.771 1.00 24.15 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? -0.396 -4.845 -5.988 1.00 24.19 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? -2.346 -4.123 -7.363 1.00 21.04 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? -1.690 -4.269 -8.688 1.00 20.00 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? -2.672 -4.266 -9.876 1.00 18.29 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? -3.364 -2.980 -9.919 1.00 16.21 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? -2.123 -4.495 -11.318 1.00 19.53 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? -2.959 -5.352 -12.130 1.00 19.75 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? -2.126 -3.106 -11.950 1.00 18.80 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? -3.373 -2.518 -11.277 1.00 17.39 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? -3.381 -1.066 -11.195 1.00 16.65 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? -4.443 -0.212 -11.374 1.00 16.45 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? -4.109 1.040 -11.195 1.00 16.84 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? -2.755 1.001 -10.878 1.00 14.25 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? -1.860 2.045 -10.583 1.00 13.09 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? -2.112 3.247 -10.548 1.00 12.34 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? -0.568 1.566 -10.323 1.00 13.22 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? -0.198 0.239 -10.335 1.00 12.92 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 1.084 -0.059 -10.071 1.00 11.77 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? -1.036 -0.749 -10.597 1.00 13.04 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? -2.287 -0.290 -10.868 1.00 13.94 ? 6 DG A C4 1
HETATM 121 CA CA . CA B 2 . ? -2.860 11.776 8.897 1.00 9.74 2 101 CA A CA 1
HETATM 122 CA CA . CA C 2 . ? -6.588 7.895 7.396 1.00 11.85 2 102 CA A CA 1
HETATM 123 CA CA . CA D 2 . ? -1.477 11.029 -1.233 1.00 6.14 2 103 CA A CA 1
HETATM 124 CA CA . CA E 2 . ? -6.781 9.917 -0.590 1.00 10.63 2 104 CA A CA 1
HETATM 125 CA CA . CA F 2 . ? -3.176 0.272 2.221 1.00 9.80 2 105 CA A CA 1
HETATM 126 CL CL . CL G 3 . ? -3.552 4.746 5.104 1.00 40.93 ? 106 CL A CL 1
HETATM 127 CL CL . CL H 3 . ? -2.533 -0.344 -2.232 1.00 12.50 ? 107 CL A CL 1
HETATM 128 O O . HOH I 4 . ? -3.145 14.135 9.076 1.00 21.23 ? 201 HOH A O 1
HETATM 129 O O . HOH I 4 . ? -0.881 11.416 10.789 1.00 46.62 ? 202 HOH A O 1
HETATM 130 O O . HOH I 4 . ? -3.695 11.974 10.900 1.00 9.22 ? 203 HOH A O 1
HETATM 131 O O . HOH I 4 . ? -1.251 11.795 6.981 1.00 8.19 ? 204 HOH A O 1
HETATM 132 O O . HOH I 4 . ? -6.317 9.620 9.317 1.00 19.82 ? 205 HOH A O 1
HETATM 133 O O . HOH I 4 . ? -7.730 6.321 8.209 1.00 58.32 ? 206 HOH A O 1
HETATM 134 O O . HOH I 4 . ? -8.435 8.005 5.555 1.00 80.37 ? 207 HOH A O 1
HETATM 135 O O . HOH I 4 . ? -8.142 8.534 8.572 1.00 38.49 ? 208 HOH A O 1
HETATM 136 O O . HOH I 4 . ? -5.909 6.643 5.772 1.00 17.67 ? 209 HOH A O 1
HETATM 137 O O . HOH I 4 . ? -0.022 12.654 -2.512 1.00 11.05 ? 210 HOH A O 1
HETATM 138 O O . HOH I 4 . ? 0.226 9.470 -1.173 1.00 6.49 ? 211 HOH A O 1
HETATM 139 O O . HOH I 4 . ? -1.024 12.336 0.606 1.00 5.37 ? 212 HOH A O 1
HETATM 140 O O . HOH I 4 . ? -2.003 9.997 -3.156 1.00 3.91 ? 213 HOH A O 1
HETATM 141 O O . HOH I 4 . ? -7.869 7.998 -1.562 1.00 8.60 ? 214 HOH A O 1
HETATM 142 O O . HOH I 4 . ? -7.653 10.888 -2.922 1.00 9.67 ? 215 HOH A O 1
HETATM 143 O O . HOH I 4 . ? -8.688 11.750 -0.031 1.00 15.93 ? 216 HOH A O 1
HETATM 144 O O . HOH I 4 . ? -7.887 9.025 1.431 1.00 42.01 ? 217 HOH A O 1
HETATM 145 O O . HOH I 4 . ? -5.331 9.387 -2.195 1.00 8.49 ? 218 HOH A O 1
HETATM 146 O O . HOH I 4 . ? -4.188 1.940 3.735 1.00 16.05 ? 219 HOH A O 1
HETATM 147 O O . HOH I 4 . ? -1.963 -1.713 2.670 1.00 7.62 ? 220 HOH A O 1
HETATM 148 O O . HOH I 4 . ? -1.232 1.330 3.038 1.00 7.77 ? 221 HOH A O 1
HETATM 149 O O . HOH I 4 . ? -1.796 0.638 0.355 1.00 21.20 ? 222 HOH A O 1
HETATM 150 O O . HOH I 4 . ? -4.756 -4.349 -1.480 1.00 52.44 ? 223 HOH A O 1
HETATM 151 O O . HOH I 4 . ? 2.723 10.268 0.520 1.00 1.26 ? 224 HOH A O 1
HETATM 152 O O . HOH I 4 . ? -7.499 7.469 -4.636 1.00 1.28 ? 225 HOH A O 1
HETATM 153 O O . HOH I 4 . ? -0.247 7.887 12.438 1.00 31.51 ? 226 HOH A O 1
HETATM 154 O O . HOH I 4 . ? 2.482 -2.860 -10.186 1.00 20.80 ? 227 HOH A O 1
HETATM 155 O O . HOH I 4 . ? -5.611 10.043 -4.685 1.00 18.64 ? 228 HOH A O 1
HETATM 156 O O . HOH I 4 . ? 2.408 7.765 11.805 1.00 9.97 ? 229 HOH A O 1
HETATM 157 O O . HOH I 4 . ? -2.469 -4.277 0.000 0.50 9.58 ? 230 HOH A O 1
HETATM 158 O O . HOH I 4 . ? -4.242 5.479 9.338 1.00 22.73 ? 231 HOH A O 1
HETATM 159 O O . HOH I 4 . ? -1.783 12.409 13.553 1.00 10.16 ? 232 HOH A O 1
HETATM 160 O O . HOH I 4 . ? -1.368 15.777 7.368 1.00 10.41 ? 233 HOH A O 1
HETATM 161 O O . HOH I 4 . ? -2.351 3.297 7.670 1.00 13.37 ? 234 HOH A O 1
HETATM 162 O O . HOH I 4 . ? -7.170 -0.972 -3.611 1.00 13.70 ? 235 HOH A O 1
HETATM 163 O O A HOH I 4 . ? -4.858 -6.570 -4.874 0.25 2.61 ? 236 HOH A O 1
HETATM 164 O O B HOH I 4 . ? -4.221 -4.797 -3.839 0.75 3.24 ? 236 HOH A O 1
HETATM 165 O O . HOH I 4 . ? 6.885 5.719 4.308 1.00 16.72 ? 237 HOH A O 1
HETATM 166 O O . HOH I 4 . ? -1.938 11.007 -6.187 1.00 49.51 ? 238 HOH A O 1
HETATM 167 O O . HOH I 4 . ? -0.588 15.988 11.910 0.50 9.88 ? 239 HOH A O 1
HETATM 168 O O . HOH I 4 . ? 4.599 8.657 9.898 1.00 19.63 ? 240 HOH A O 1
HETATM 169 O O . HOH I 4 . ? 5.348 8.595 1.586 1.00 11.77 ? 241 HOH A O 1
#
loop_
_atom_site_anisotrop.id
_atom_site_anisotrop.type_symbol
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.pdbx_label_alt_id
_atom_site_anisotrop.pdbx_label_comp_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_seq_id
_atom_site_anisotrop.pdbx_PDB_ins_code
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
1 O "O5'" . DC A 1 ? 0.3573 0.2179 0.2198 0.1395 0.0274 0.0445 1 DC A "O5'"
2 C "C5'" . DC A 1 ? 0.3119 0.1771 0.2113 0.1383 0.0277 0.0401 1 DC A "C5'"
3 C "C4'" . DC A 1 ? 0.2605 0.1198 0.2014 0.1178 0.0248 0.0465 1 DC A "C4'"
4 O "O4'" . DC A 1 ? 0.2600 0.1112 0.2005 0.1350 0.0102 0.0418 1 DC A "O4'"
5 C "C3'" . DC A 1 ? 0.2006 0.1160 0.1900 0.1079 0.0330 0.0436 1 DC A "C3'"
6 O "O3'" . DC A 1 ? 0.1971 0.1163 0.1698 0.0784 0.0554 0.0606 1 DC A "O3'"
7 C "C2'" . DC A 1 ? 0.2242 0.1242 0.1981 0.1364 0.0198 0.0418 1 DC A "C2'"
8 C "C1'" . DC A 1 ? 0.2573 0.1254 0.2053 0.1580 0.0062 0.0389 1 DC A "C1'"
9 N N1 . DC A 1 ? 0.2483 0.1205 0.2151 0.1620 -0.0043 0.0382 1 DC A N1
10 C C2 . DC A 1 ? 0.2288 0.0716 0.2197 0.1090 -0.0082 0.0507 1 DC A C2
11 O O2 . DC A 1 ? 0.1829 0.0591 0.2205 0.0829 -0.0046 0.0561 1 DC A O2
12 N N3 . DC A 1 ? 0.2163 0.0548 0.2222 0.0854 -0.0128 0.0530 1 DC A N3
13 C C4 . DC A 1 ? 0.1911 0.0354 0.2219 0.0559 -0.0083 0.0523 1 DC A C4
14 N N4 . DC A 1 ? 0.1764 0.0207 0.2223 0.0306 -0.0047 0.0470 1 DC A N4
15 C C5 . DC A 1 ? 0.2099 0.1206 0.2223 0.1285 -0.0170 0.0412 1 DC A C5
16 C C6 . DC A 1 ? 0.2582 0.1159 0.2218 0.1622 -0.0063 0.0362 1 DC A C6
17 P P . DG A 2 ? 0.1388 0.0558 0.1418 0.0561 0.0560 0.0589 2 DG A P
18 O OP1 . DG A 2 ? 0.1622 0.0418 0.1513 0.0730 0.0628 0.0488 2 DG A OP1
19 O OP2 . DG A 2 ? 0.1367 0.1118 0.1403 0.0913 0.0626 0.0888 2 DG A OP2
20 O "O5'" . DG A 2 ? 0.1556 0.0675 0.1309 0.0205 0.0550 0.0359 2 DG A "O5'"
21 C "C5'" . DG A 2 ? 0.1582 0.0666 0.1197 0.0184 0.0354 0.0138 2 DG A "C5'"
22 C "C4'" . DG A 2 ? 0.1366 0.0582 0.1074 0.0272 0.0150 -0.0017 2 DG A "C4'"
23 O "O4'" . DG A 2 ? 0.1082 0.0250 0.1044 -0.0037 0.0032 -0.0087 2 DG A "O4'"
24 C "C3'" . DG A 2 ? 0.0966 0.0749 0.1034 0.0223 0.0027 -0.0161 2 DG A "C3'"
25 O "O3'" . DG A 2 ? 0.0606 0.0737 0.1014 0.0094 0.0010 -0.0286 2 DG A "O3'"
26 C "C2'" . DG A 2 ? 0.0768 0.0569 0.1023 -0.0036 0.0018 -0.0080 2 DG A "C2'"
27 C "C1'" . DG A 2 ? 0.0893 0.0443 0.1034 -0.0151 -0.0026 0.0021 2 DG A "C1'"
28 N N9 . DG A 2 ? 0.1349 0.0702 0.1033 0.0279 -0.0143 0.0259 2 DG A N9
29 C C8 . DG A 2 ? 0.1352 0.1049 0.1021 0.0313 -0.0186 0.0261 2 DG A C8
30 N N7 . DG A 2 ? 0.1693 0.1421 0.1021 0.0329 -0.0192 0.0202 2 DG A N7
31 C C5 . DG A 2 ? 0.1744 0.1290 0.1015 0.0698 -0.0205 0.0401 2 DG A C5
32 C C6 . DG A 2 ? 0.1848 0.1734 0.0989 0.1227 -0.0252 0.0536 2 DG A C6
33 O O6 . DG A 2 ? 0.2324 0.2238 0.0952 0.1790 -0.0268 0.0475 2 DG A O6
34 N N1 . DG A 2 ? 0.1646 0.1302 0.1031 0.0860 -0.0248 0.0732 2 DG A N1
35 C C2 . DG A 2 ? 0.1526 0.1455 0.1055 0.1000 -0.0102 0.0786 2 DG A C2
36 N N2 . DG A 2 ? 0.1164 0.1682 0.1097 0.0969 0.0038 0.0945 2 DG A N2
37 N N3 . DG A 2 ? 0.1702 0.1319 0.1090 0.1221 -0.0118 0.0531 2 DG A N3
38 C C4 . DG A 2 ? 0.1437 0.1024 0.1037 0.0746 -0.0225 0.0417 2 DG A C4
39 P P . DC A 3 ? 0.0802 0.0622 0.1073 0.0438 0.0285 -0.0026 3 DC A P
40 O OP1 . DC A 3 ? 0.1082 0.1147 0.1129 0.0812 0.0203 0.0002 3 DC A OP1
41 O OP2 . DC A 3 ? 0.1202 0.0852 0.1074 0.0957 0.0077 -0.0046 3 DC A OP2
42 O "O5'" . DC A 3 ? 0.0933 0.0768 0.1114 0.0790 0.0342 0.0179 3 DC A "O5'"
43 C "C5'" . DC A 3 ? 0.0587 0.0169 0.1009 0.0249 0.0332 0.0225 3 DC A "C5'"
44 C "C4'" . DC A 3 ? 0.0776 0.0189 0.0989 0.0316 0.0254 0.0176 3 DC A "C4'"
45 O "O4'" . DC A 3 ? 0.0374 0.0080 0.0934 0.0093 0.0192 0.0123 3 DC A "O4'"
46 C "C3'" . DC A 3 ? 0.0510 0.0077 0.1061 -0.0068 0.0133 0.0118 3 DC A "C3'"
47 O "O3'" . DC A 3 ? 0.0481 0.0247 0.1100 0.0084 -0.0028 0.0154 3 DC A "O3'"
48 C "C2'" . DC A 3 ? 0.0495 0.0048 0.0976 0.0017 0.0108 -0.0002 3 DC A "C2'"
49 C "C1'" . DC A 3 ? 0.0581 0.0131 0.0935 0.0211 0.0070 0.0016 3 DC A "C1'"
50 N N1 . DC A 3 ? 0.0443 0.0076 0.0836 -0.0054 -0.0154 0.0145 3 DC A N1
51 C C2 . DC A 3 ? 0.0461 0.0157 0.0797 0.0165 -0.0227 0.0075 3 DC A C2
52 O O2 . DC A 3 ? 0.0411 0.0210 0.0761 0.0104 -0.0376 0.0100 3 DC A O2
53 N N3 . DC A 3 ? 0.0155 0.0288 0.0738 0.0054 -0.0218 0.0121 3 DC A N3
54 C C4 . DC A 3 ? 0.0185 0.0396 0.0684 -0.0042 -0.0208 0.0068 3 DC A C4
55 N N4 . DC A 3 ? 0.0367 0.0867 0.0611 0.0504 -0.0117 -0.0070 3 DC A N4
56 C C5 . DC A 3 ? 0.0372 0.0300 0.0736 -0.0287 -0.0168 0.0145 3 DC A C5
57 C C6 . DC A 3 ? 0.0342 0.0129 0.0794 -0.0149 -0.0228 0.0177 3 DC A C6
58 P P . DG A 4 ? 0.0425 0.0588 0.1107 -0.0404 -0.0105 -0.0036 4 DG A P
59 O OP1 . DG A 4 ? 0.0519 0.0371 0.1092 -0.0078 -0.0060 -0.0050 4 DG A OP1
60 O OP2 . DG A 4 ? 0.0188 0.1242 0.1213 -0.0376 -0.0164 0.0002 4 DG A OP2
61 O "O5'" . DG A 4 ? 0.0631 0.0470 0.1020 -0.0427 -0.0100 -0.0251 4 DG A "O5'"
62 C "C5'" . DG A 4 ? 0.0844 0.0696 0.1066 -0.0511 -0.0025 -0.0302 4 DG A "C5'"
63 C "C4'" . DG A 4 ? 0.1023 0.0769 0.1124 -0.0533 0.0069 -0.0352 4 DG A "C4'"
64 O "O4'" . DG A 4 ? 0.1082 0.0791 0.1148 -0.0582 0.0106 -0.0347 4 DG A "O4'"
65 C "C3'" . DG A 4 ? 0.0877 0.0769 0.1156 -0.0385 0.0165 -0.0496 4 DG A "C3'"
66 O "O3'" . DG A 4 ? 0.0879 0.0818 0.1278 -0.0208 0.0145 -0.0551 4 DG A "O3'"
67 C "C2'" . DG A 4 ? 0.0846 0.0418 0.1110 -0.0505 0.0234 -0.0375 4 DG A "C2'"
68 C "C1'" . DG A 4 ? 0.1047 0.0401 0.1097 -0.0593 0.0179 -0.0159 4 DG A "C1'"
69 N N9 . DG A 4 ? 0.1120 0.0528 0.1045 -0.0016 0.0226 0.0052 4 DG A N9
70 C C8 . DG A 4 ? 0.1506 0.0470 0.1018 0.0382 0.0256 0.0034 4 DG A C8
71 N N7 . DG A 4 ? 0.1256 0.0048 0.1008 -0.0007 0.0236 0.0026 4 DG A N7
72 C C5 . DG A 4 ? 0.0827 0.0398 0.1014 0.0074 0.0325 0.0177 4 DG A C5
73 C C6 . DG A 4 ? 0.0621 0.0386 0.1023 0.0020 0.0339 0.0299 4 DG A C6
74 O O6 . DG A 4 ? 0.0536 0.0311 0.1011 -0.0312 0.0173 0.0130 4 DG A O6
75 N N1 . DG A 4 ? 0.0318 0.0140 0.1083 0.0158 0.0275 0.0166 4 DG A N1
76 C C2 . DG A 4 ? 0.0347 0.0200 0.1137 0.0212 0.0116 0.0125 4 DG A C2
77 N N2 . DG A 4 ? 0.0124 0.0181 0.1231 -0.0098 -0.0125 0.0071 4 DG A N2
78 N N3 . DG A 4 ? 0.0699 0.0308 0.1088 0.0398 0.0233 0.0164 4 DG A N3
79 C C4 . DG A 4 ? 0.0963 0.0513 0.1037 0.0502 0.0257 0.0129 4 DG A C4
80 P P . DC A 5 ? 0.0590 0.1502 0.1443 -0.0085 0.0144 -0.0449 5 DC A P
81 O OP1 . DC A 5 ? 0.0098 0.1003 0.1476 -0.0056 0.0213 -0.0382 5 DC A OP1
82 O OP2 . DC A 5 ? 0.0426 0.1381 0.1406 -0.0529 -0.0015 -0.0757 5 DC A OP2
83 O "O5'" . DC A 5 ? 0.0565 0.2009 0.1653 0.0263 0.0095 -0.0328 5 DC A "O5'"
84 C "C5'" . DC A 5 ? 0.0349 0.2378 0.1803 0.0291 -0.0022 -0.0324 5 DC A "C5'"
85 C "C4'" . DC A 5 ? 0.0197 0.2625 0.1913 0.0268 -0.0140 -0.0224 5 DC A "C4'"
86 O "O4'" . DC A 5 ? 0.0074 0.2739 0.1897 0.0236 -0.0107 -0.0038 5 DC A "O4'"
87 C "C3'" . DC A 5 ? 0.0647 0.2972 0.2014 0.0434 -0.0198 -0.0048 5 DC A "C3'"
88 O "O3'" . DC A 5 ? 0.1372 0.3519 0.2179 0.0643 -0.0268 0.0062 5 DC A "O3'"
89 C "C2'" . DC A 5 ? 0.0466 0.2984 0.1956 0.0300 -0.0205 -0.0050 5 DC A "C2'"
90 C "C1'" . DC A 5 ? 0.0258 0.2755 0.1910 0.0209 -0.0248 -0.0067 5 DC A "C1'"
91 N N1 . DC A 5 ? 0.0212 0.2509 0.1848 0.0157 -0.0394 0.0036 5 DC A N1
92 C C2 . DC A 5 ? 0.0211 0.1955 0.1861 -0.0271 -0.0484 0.0048 5 DC A C2
93 O O2 . DC A 5 ? 0.0212 0.1525 0.1922 -0.0039 -0.0554 0.0073 5 DC A O2
94 N N3 . DC A 5 ? 0.0227 0.1920 0.1809 -0.0405 -0.0431 0.0133 5 DC A N3
95 C C4 . DC A 5 ? 0.0126 0.1635 0.1745 -0.0260 -0.0296 0.0326 5 DC A C4
96 N N4 . DC A 5 ? 0.0086 0.1258 0.1689 -0.0203 -0.0182 0.0619 5 DC A N4
97 C C5 . DC A 5 ? 0.0118 0.2116 0.1760 0.0025 -0.0343 0.0204 5 DC A C5
98 C C6 . DC A 5 ? 0.0150 0.2566 0.1781 0.0081 -0.0413 0.0112 5 DC A C6
99 P P . DG A 6 ? 0.2372 0.3709 0.2307 0.1028 -0.0138 0.0142 6 DG A P
100 O OP1 . DG A 6 ? 0.2730 0.4091 0.2356 0.1936 -0.0105 0.0115 6 DG A OP1
101 O OP2 . DG A 6 ? 0.3000 0.3852 0.2339 0.1249 0.0035 0.0115 6 DG A OP2
102 O "O5'" . DG A 6 ? 0.2645 0.3028 0.2320 0.0689 -0.0069 0.0048 6 DG A "O5'"
103 C "C5'" . DG A 6 ? 0.2649 0.2634 0.2315 0.0109 -0.0092 0.0061 6 DG A "C5'"
104 C "C4'" . DG A 6 ? 0.2403 0.2210 0.2337 -0.0566 -0.0182 0.0015 6 DG A "C4'"
105 O "O4'" . DG A 6 ? 0.1973 0.1829 0.2356 -0.1288 -0.0269 0.0011 6 DG A "O4'"
106 C "C3'" . DG A 6 ? 0.2658 0.2423 0.2340 0.0100 -0.0135 -0.0153 6 DG A "C3'"
107 O "O3'" . DG A 6 ? 0.2933 0.2265 0.2306 0.0233 -0.0047 -0.0295 6 DG A "O3'"
108 C "C2'" . DG A 6 ? 0.2455 0.2335 0.2353 -0.0039 -0.0219 -0.0071 6 DG A "C2'"
109 C "C1'" . DG A 6 ? 0.2108 0.2108 0.2391 -0.0508 -0.0393 -0.0101 6 DG A "C1'"
110 N N9 . DG A 6 ? 0.1742 0.2164 0.2422 0.0037 -0.0697 -0.0317 6 DG A N9
111 C C8 . DG A 6 ? 0.1446 0.2361 0.2442 0.0130 -0.0818 -0.0391 6 DG A C8
112 N N7 . DG A 6 ? 0.1375 0.2570 0.2454 0.0395 -0.0894 -0.0466 6 DG A N7
113 C C5 . DG A 6 ? 0.1039 0.1963 0.2411 -0.0122 -0.1053 -0.0590 6 DG A C5
114 C C6 . DG A 6 ? 0.0941 0.1668 0.2365 0.0284 -0.1279 -0.0822 6 DG A C6
115 O O6 . DG A 6 ? 0.0852 0.1456 0.2382 0.0659 -0.1349 -0.0851 6 DG A O6
116 N N1 . DG A 6 ? 0.0878 0.1797 0.2348 0.0241 -0.1319 -0.0970 6 DG A N1
117 C C2 . DG A 6 ? 0.0908 0.1663 0.2340 0.0242 -0.1326 -0.0994 6 DG A C2
118 N N2 . DG A 6 ? 0.0793 0.1318 0.2360 0.0260 -0.1229 -0.1011 6 DG A N2
119 N N3 . DG A 6 ? 0.0872 0.1660 0.2424 -0.0415 -0.1068 -0.0642 6 DG A N3
120 C C4 . DG A 6 ? 0.1100 0.1776 0.2420 -0.0473 -0.0964 -0.0527 6 DG A C4
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