data_4DY8
#
_entry.id 4DY8
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.388
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4DY8 pdb_00004dy8 10.2210/pdb4dy8/pdb
NDB NA1649 ? ?
RCSB RCSB070932 ? ?
WWPDB D_1000070932 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-11-28
2 'Structure model' 1 1 2012-12-12
3 'Structure model' 1 2 2024-03-20
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' struct_conn
5 3 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_struct_conn.pdbx_dist_value'
4 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id'
5 3 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id'
6 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
7 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
9 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
10 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
11 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
12 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'
13 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
14 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
15 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
16 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
17 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
18 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
19 3 'Structure model' '_struct_conn.ptnr2_label_seq_id'
20 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
21 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
22 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 4DY8
_pdbx_database_status.recvd_initial_deposition_date 2012-02-28
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 4DWY
_pdbx_database_related.details 'The same oligonucleotide sequence co-crystallized with Mn2+ in P21 space group'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mandal, P.K.' 1
'Venkadesh, S.' 2
'Gautham, N.' 3
#
_citation.id primary
_citation.title 'Interactions of Mn(2+) with a non-self-complementary Z-type DNA duplex'
_citation.journal_abbrev 'Acta Crystallogr.,Sect.F'
_citation.journal_volume 68
_citation.page_first 1420
_citation.page_last 1426
_citation.year 2012
_citation.journal_id_ASTM ?
_citation.country DK
_citation.journal_id_ISSN 1744-3091
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 23192018
_citation.pdbx_database_id_DOI 10.1107/S1744309112041759
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mandal, P.K.' 1 ?
primary 'Venkadesh, S.' 2 ?
primary 'Gautham, N.' 3 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*AP*CP*GP*CP*G)-3')
;
1794.206 1 ? ? ? ?
2 polymer syn
;DNA (5'-D(*CP*GP*CP*GP*TP*G)-3')
;
1825.216 1 ? ? ? ?
3 polymer syn
;DNA (5'-D(P*TP*G)-3')
;
588.441 2 ? ? ? ?
4 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ?
5 water nat water 18.015 34 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DG)(DC)(DG)' CACGCG A ?
2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DT)(DG)' CGCGTG B ?
3 polydeoxyribonucleotide no no '(DT)(DG)' TG C,D ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 'MANGANESE (II) ION' MN
5 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DA n
1 3 DC n
1 4 DG n
1 5 DC n
1 6 DG n
2 1 DC n
2 2 DG n
2 3 DC n
2 4 DG n
2 5 DT n
2 6 DG n
3 1 DT n
3 2 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC DC A . n
A 1 2 DA 2 2 2 DA DA A . n
A 1 3 DC 3 3 3 DC DC A . n
A 1 4 DG 4 4 4 DG DG A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DG 6 6 6 DG DG A . n
B 2 1 DC 1 7 7 DC DC B . n
B 2 2 DG 2 8 8 DG DG B . n
B 2 3 DC 3 9 9 DC DC B . n
B 2 4 DG 4 10 10 DG DG B . n
B 2 5 DT 5 11 11 DT DT B . n
B 2 6 DG 6 12 12 DG DG B . n
C 3 1 DT 1 13 13 DT DT C . n
C 3 2 DG 2 14 14 DG DG C . n
D 3 1 DT 1 15 15 DT DT D . n
D 3 2 DG 2 16 16 DG DG D . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 MN 1 101 1 MN MN A .
F 5 HOH 1 201 3 HOH HOH A .
F 5 HOH 2 202 4 HOH HOH A .
F 5 HOH 3 203 9 HOH HOH A .
F 5 HOH 4 204 13 HOH HOH A .
F 5 HOH 5 205 16 HOH HOH A .
F 5 HOH 6 206 18 HOH HOH A .
F 5 HOH 7 207 21 HOH HOH A .
F 5 HOH 8 208 23 HOH HOH A .
F 5 HOH 9 209 25 HOH HOH A .
F 5 HOH 10 210 29 HOH HOH A .
F 5 HOH 11 211 30 HOH HOH A .
F 5 HOH 12 212 32 HOH HOH A .
F 5 HOH 13 213 5 HOH HOH A .
F 5 HOH 14 214 10 HOH HOH A .
F 5 HOH 15 215 26 HOH HOH A .
G 5 HOH 1 101 2 HOH HOH B .
G 5 HOH 2 102 6 HOH HOH B .
G 5 HOH 3 103 11 HOH HOH B .
G 5 HOH 4 104 12 HOH HOH B .
G 5 HOH 5 105 17 HOH HOH B .
G 5 HOH 6 106 20 HOH HOH B .
G 5 HOH 7 107 27 HOH HOH B .
G 5 HOH 8 108 28 HOH HOH B .
G 5 HOH 9 109 34 HOH HOH B .
H 5 HOH 1 101 7 HOH HOH C .
H 5 HOH 2 102 8 HOH HOH C .
H 5 HOH 3 103 14 HOH HOH C .
H 5 HOH 4 104 15 HOH HOH C .
H 5 HOH 5 105 19 HOH HOH C .
H 5 HOH 6 106 33 HOH HOH C .
I 5 HOH 1 101 1 HOH HOH D .
I 5 HOH 2 102 22 HOH HOH D .
I 5 HOH 3 103 24 HOH HOH D .
I 5 HOH 4 104 31 HOH HOH D .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MAR345dtb 'data collection' . ? 1
AMoRE phasing . ? 2
REFMAC refinement 5.5.0109 ? 3
AUTOMAR 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 4DY8
_cell.length_a 35.213
_cell.length_b 35.213
_cell.length_c 44.452
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 4DY8
_symmetry.space_group_name_H-M 'P 65'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 170
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 4DY8
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.6587
_exptl_crystal.density_percent_sol 25.8453
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details '50% methyl pentane diol, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 7.0'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'MAR scanner 345 mm plate'
_diffrn_detector.pdbx_collection_date 2008-09-28
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator graphite
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'BRUKER AXS MICROSTAR'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 4DY8
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30
_reflns.d_resolution_high 1.76
_reflns.number_obs 3133
_reflns.number_all 3216
_reflns.percent_possible_obs 97.4
_reflns.pdbx_Rmerge_I_obs 0.11
_reflns.pdbx_Rsym_value 0.09
_reflns.pdbx_netI_over_sigmaI 4.17
_reflns.B_iso_Wilson_estimate 29.9
_reflns.pdbx_redundancy 3.86
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.76
_reflns_shell.d_res_low 1.82
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.34
_reflns_shell.pdbx_Rsym_value 0.30
_reflns_shell.meanI_over_sigI_obs 1.1
_reflns_shell.pdbx_redundancy 3.98
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.number_possible ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4DY8
_refine.ls_number_reflns_obs 2938
_refine.ls_number_reflns_all 2982
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 25.15
_refine.ls_d_res_high 1.76
_refine.ls_percent_reflns_obs 98.50
_refine.ls_R_factor_obs 0.22741
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.22540
_refine.ls_R_factor_R_free 0.26150
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.6
_refine.ls_number_reflns_R_free 141
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.946
_refine.correlation_coeff_Fo_to_Fc_free 0.929
_refine.B_iso_mean 18.9076
_refine.aniso_B[1][1] 0.0400
_refine.aniso_B[2][2] 0.0400
_refine.aniso_B[3][3] -0.0900
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.0420
_refine.pdbx_overall_ESU_R_Free 0.035
_refine.overall_SU_ML 0.1090
_refine.overall_SU_B 3.7480
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 321
_refine_hist.pdbx_number_atoms_ligand 1
_refine_hist.number_atoms_solvent 34
_refine_hist.number_atoms_total 356
_refine_hist.d_res_high 1.76
_refine_hist.d_res_low 25.15
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' r_bond_refined_d 357 0.014 0.021 ? ?
'X-RAY DIFFRACTION' r_angle_refined_deg 544 2.341 3.000 ? ?
'X-RAY DIFFRACTION' r_chiral_restr 61 0.110 0.200 ? ?
'X-RAY DIFFRACTION' r_gen_planes_refined 170 0.008 0.020 ? ?
'X-RAY DIFFRACTION' r_scbond_it 357 2.293 3.000 ? ?
'X-RAY DIFFRACTION' r_scangle_it 544 2.651 4.500 ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.763
_refine_ls_shell.d_res_low 1.809
_refine_ls_shell.number_reflns_R_work 211
_refine_ls_shell.R_factor_R_work 0.216
_refine_ls_shell.percent_reflns_obs 96.86
_refine_ls_shell.R_factor_R_free 0.118
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 5
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
#
_database_PDB_matrix.entry_id 4DY8
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 4DY8
_struct.title 'Interactions of Mn2+ with a non-self-complementary Z-type DNA duplex'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag N
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4DY8
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-type DNA double helices, Manganese ions, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
E N N 4 ?
F N N 5 ?
G N N 5 ?
H N N 5 ?
I N N 5 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_db_isoform
1 PDB 4DY8 4DY8 1 ? ? ?
2 PDB 4DY8 4DY8 2 ? ? ?
3 PDB 4DY8 4DY8 3 ? ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 4DY8 A 1 ? 6 ? 4DY8 1 ? 6 ? 1 6
2 2 4DY8 B 1 ? 6 ? 4DY8 7 ? 12 ? 7 12
3 3 4DY8 C 1 ? 2 ? 4DY8 13 ? 14 ? 13 14
4 3 4DY8 D 1 ? 2 ? 4DY8 15 ? 16 ? 15 16
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_and_software_defined_assembly PISA dimeric 2
2 author_and_software_defined_assembly PISA dimeric 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 800 ?
1 MORE -11 ?
1 'SSA (A^2)' 2300 ?
2 'ABSA (A^2)' 230 ?
2 MORE -5 ?
2 'SSA (A^2)' 1070 ?
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,E,F,G
2 1 C,D,H,I
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 E MN . MN A ? A DG 4 A MN 101 1_555 ? ? ? ? ? ? ? 2.740 ? ?
metalc2 metalc ? ? E MN . MN B ? ? 1_555 D DG 2 O6 ? ? A MN 101 D DG 16 1_555 ? ? ? ? ? ? ? 2.570 ? ?
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? C DT 1 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DT 13 D DG 16 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ?
hydrog19 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DT 1 O2 ? ? C DG 14 D DT 15 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id MN
_struct_site.pdbx_auth_seq_id 101
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 2
_struct_site.details 'BINDING SITE FOR RESIDUE MN A 101'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 2 DG A 4 ? DG A 4 . ? 1_555 ?
2 AC1 2 DG D 2 ? DG D 16 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.367 1.419 -0.052 0.006 N
2 1 P C DT 13 ? ? "O5'" C DT 13 ? ? 1.509 1.593 -0.084 0.010 N
3 1 "O3'" C DG 14 ? ? "C3'" C DG 14 ? ? 1.324 1.419 -0.095 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.56 118.90 3.66 0.60 N
2 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 110.47 106.80 3.67 0.50 N
3 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.59 108.30 2.29 0.30 N
4 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.04 108.30 2.74 0.30 N
5 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.15 108.30 2.85 0.30 N
6 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 109.80 106.80 3.00 0.50 N
7 1 "O3'" B DG 8 ? ? P B DC 9 ? ? "O5'" B DC 9 ? ? 91.44 104.00 -12.56 1.90 Y
8 1 "O3'" B DG 8 ? ? P B DC 9 ? ? OP1 B DC 9 ? ? 118.12 110.50 7.62 1.10 Y
9 1 P B DC 9 ? ? "O5'" B DC 9 ? ? "C5'" B DC 9 ? ? 130.53 120.90 9.63 1.60 N
10 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 110.64 108.30 2.34 0.30 N
11 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 113.19 108.30 4.89 0.30 N
12 1 C4 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 123.08 119.00 4.08 0.60 N
13 1 "O4'" D DT 15 ? ? "C1'" D DT 15 ? ? N1 D DT 15 ? ? 110.19 108.30 1.89 0.30 N
14 1 "O4'" D DG 16 ? ? "C1'" D DG 16 ? ? N9 D DG 16 ? ? 111.24 108.30 2.94 0.30 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DT OP3 O N N 108
DT P P N N 109
DT OP1 O N N 110
DT OP2 O N N 111
DT "O5'" O N N 112
DT "C5'" C N N 113
DT "C4'" C N R 114
DT "O4'" O N N 115
DT "C3'" C N S 116
DT "O3'" O N N 117
DT "C2'" C N N 118
DT "C1'" C N R 119
DT N1 N N N 120
DT C2 C N N 121
DT O2 O N N 122
DT N3 N N N 123
DT C4 C N N 124
DT O4 O N N 125
DT C5 C N N 126
DT C7 C N N 127
DT C6 C N N 128
DT HOP3 H N N 129
DT HOP2 H N N 130
DT "H5'" H N N 131
DT "H5''" H N N 132
DT "H4'" H N N 133
DT "H3'" H N N 134
DT "HO3'" H N N 135
DT "H2'" H N N 136
DT "H2''" H N N 137
DT "H1'" H N N 138
DT H3 H N N 139
DT H71 H N N 140
DT H72 H N N 141
DT H73 H N N 142
DT H6 H N N 143
HOH O O N N 144
HOH H1 H N N 145
HOH H2 H N N 146
MN MN MN N N 147
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
_ndb_struct_conf_na.entry_id 4DY8
_ndb_struct_conf_na.feature 'z-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 B DG 6 1_555 -0.216 -0.107 -0.277 4.072 4.866 0.722 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1
1 A DA 2 1_555 B DT 5 1_555 0.657 -0.183 0.613 -1.252 5.739 0.962 2 A_DA2:DT11_B A 2 ? B 11 ? 20 1
1 A DC 3 1_555 B DG 4 1_555 -0.447 -0.185 0.113 3.305 3.132 1.898 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1
1 A DG 4 1_555 B DC 3 1_555 0.898 -0.206 0.578 2.170 2.610 -3.315 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1
1 A DC 5 1_555 B DG 2 1_555 -0.590 -0.049 0.151 1.478 2.843 0.182 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1
1 A DG 6 1_555 B DC 1 1_555 0.616 -0.265 0.652 6.055 8.244 1.188 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1
1 C DT 1 1_555 D DG 2 1_555 0.045 -0.136 -0.124 10.449 -4.218 2.955 7 C_DT13:DG16_D C 13 ? D 16 ? ? ?
1 C DG 2 1_555 D DT 1 1_555 0.164 -0.202 0.110 -5.438 4.480 1.384 8 C_DG14:DT15_D C 14 ? D 15 ? ? ?
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 B DG 6 1_555 A DA 2 1_555 B DT 5 1_555 -0.408 5.376 3.570 -5.533 -4.364 -8.021 -18.582 -15.280 4.668 25.612
-32.475 -10.673 1 AA_DC1DA2:DT11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ?
1 A DA 2 1_555 B DT 5 1_555 A DC 3 1_555 B DG 4 1_555 0.208 -0.818 3.398 3.464 -0.957 -54.043 0.960 0.449 3.365 1.052
3.807 -54.153 2 AA_DA2DC3:DG10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ?
1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.440 5.214 3.622 -1.616 -0.403 -2.138 -97.958 -58.568 3.371 9.170
-36.789 -2.710 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ?
1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.200 -0.729 3.305 3.982 -8.597 -55.637 1.256 0.012 3.176 9.137
4.232 -56.374 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ?
1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.158 5.384 3.508 -1.458 4.251 -6.435 -46.819 -3.722 -0.065 -33.066
-11.339 -7.848 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ?
1 C DT 1 1_555 D DG 2 1_555 C DG 2 1_555 D DT 1 1_555 -0.101 5.379 3.755 1.244 -5.247 -8.889 -15.165 2.887 5.935 30.446
7.215 -10.394 6 CC_DT13DG14:DT15DG16_DD C 13 ? D 16 ? C 14 ? D 15 ?
#
loop_
_pdbx_reflns_twin.domain_id
_pdbx_reflns_twin.crystal_id
_pdbx_reflns_twin.diffrn_id
_pdbx_reflns_twin.type
_pdbx_reflns_twin.operator
_pdbx_reflns_twin.fraction
1 1 1 ? 'H, K, L' 0.947
2 1 1 ? '-H-K, K, -L' 0.053
#
_atom_sites.entry_id 4DY8
_atom_sites.fract_transf_matrix[1][1] 0.028399
_atom_sites.fract_transf_matrix[1][2] 0.016396
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.032792
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.022496
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
MN
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? -9.004 8.618 10.454 1.00 9.54 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? -7.840 8.676 9.655 1.00 15.13 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? -7.418 10.109 9.406 1.00 17.93 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? -8.541 10.924 8.937 1.00 18.86 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? -6.866 10.808 10.633 1.00 17.89 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? -5.847 11.679 10.289 1.00 20.10 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? -8.074 11.629 11.078 1.00 16.49 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? -8.598 12.100 9.736 1.00 18.27 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? -10.005 12.590 9.820 1.00 17.31 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? -10.301 13.921 10.112 1.00 17.07 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? -9.379 14.728 10.315 1.00 16.10 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? -11.620 14.277 10.182 1.00 17.19 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? -12.596 13.376 9.964 1.00 17.67 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? -13.872 13.766 10.015 1.00 16.32 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? -12.290 12.030 9.642 1.00 16.37 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? -11.002 11.694 9.593 1.00 16.95 ? 1 DC A C6 1
ATOM 17 P P . DA A 1 2 ? -4.322 11.248 10.401 1.00 16.57 ? 2 DA A P 1
ATOM 18 O OP1 . DA A 1 2 ? -4.042 10.368 11.565 1.00 14.57 ? 2 DA A OP1 1
ATOM 19 O OP2 . DA A 1 2 ? -3.545 12.509 10.191 1.00 19.06 ? 2 DA A OP2 1
ATOM 20 O "O5'" . DA A 1 2 ? -4.154 10.376 9.096 1.00 16.15 ? 2 DA A "O5'" 1
ATOM 21 C "C5'" . DA A 1 2 ? -4.323 10.944 7.836 1.00 19.19 ? 2 DA A "C5'" 1
ATOM 22 C "C4'" . DA A 1 2 ? -4.308 9.834 6.838 1.00 19.27 ? 2 DA A "C4'" 1
ATOM 23 O "O4'" . DA A 1 2 ? -5.448 9.001 7.014 1.00 20.89 ? 2 DA A "O4'" 1
ATOM 24 C "C3'" . DA A 1 2 ? -4.417 10.390 5.441 1.00 21.86 ? 2 DA A "C3'" 1
ATOM 25 O "O3'" . DA A 1 2 ? -3.077 10.491 5.053 1.00 24.35 ? 2 DA A "O3'" 1
ATOM 26 C "C2'" . DA A 1 2 ? -5.189 9.325 4.669 1.00 22.30 ? 2 DA A "C2'" 1
ATOM 27 C "C1'" . DA A 1 2 ? -5.905 8.540 5.768 1.00 22.31 ? 2 DA A "C1'" 1
ATOM 28 N N9 . DA A 1 2 ? -7.348 8.691 5.779 1.00 22.54 ? 2 DA A N9 1
ATOM 29 C C8 . DA A 1 2 ? -8.279 7.700 5.696 1.00 20.34 ? 2 DA A C8 1
ATOM 30 N N7 . DA A 1 2 ? -9.503 8.151 5.721 1.00 22.42 ? 2 DA A N7 1
ATOM 31 C C5 . DA A 1 2 ? -9.378 9.525 5.822 1.00 23.67 ? 2 DA A C5 1
ATOM 32 C C6 . DA A 1 2 ? -10.299 10.612 5.893 1.00 24.01 ? 2 DA A C6 1
ATOM 33 N N6 . DA A 1 2 ? -11.640 10.513 5.871 1.00 23.03 ? 2 DA A N6 1
ATOM 34 N N1 . DA A 1 2 ? -9.779 11.856 5.993 1.00 22.95 ? 2 DA A N1 1
ATOM 35 C C2 . DA A 1 2 ? -8.459 12.037 6.023 1.00 22.13 ? 2 DA A C2 1
ATOM 36 N N3 . DA A 1 2 ? -7.512 11.113 5.957 1.00 22.31 ? 2 DA A N3 1
ATOM 37 C C4 . DA A 1 2 ? -8.039 9.877 5.862 1.00 22.89 ? 2 DA A C4 1
ATOM 38 P P . DC A 1 3 ? -2.427 11.878 4.667 1.00 25.80 ? 3 DC A P 1
ATOM 39 O OP1 . DC A 1 3 ? -1.031 11.629 4.211 1.00 23.90 ? 3 DC A OP1 1
ATOM 40 O OP2 . DC A 1 3 ? -2.741 12.851 5.753 1.00 19.12 ? 3 DC A OP2 1
ATOM 41 O "O5'" . DC A 1 3 ? -3.257 12.175 3.309 1.00 22.49 ? 3 DC A "O5'" 1
ATOM 42 C "C5'" . DC A 1 3 ? -2.781 13.021 2.257 1.00 20.77 ? 3 DC A "C5'" 1
ATOM 43 C "C4'" . DC A 1 3 ? -3.740 14.171 1.984 1.00 19.54 ? 3 DC A "C4'" 1
ATOM 44 O "O4'" . DC A 1 3 ? -5.018 13.665 1.512 1.00 16.49 ? 3 DC A "O4'" 1
ATOM 45 C "C3'" . DC A 1 3 ? -4.036 15.002 3.232 1.00 18.17 ? 3 DC A "C3'" 1
ATOM 46 O "O3'" . DC A 1 3 ? -4.314 16.363 2.923 1.00 18.42 ? 3 DC A "O3'" 1
ATOM 47 C "C2'" . DC A 1 3 ? -5.282 14.286 3.738 1.00 15.73 ? 3 DC A "C2'" 1
ATOM 48 C "C1'" . DC A 1 3 ? -6.021 14.113 2.405 1.00 13.64 ? 3 DC A "C1'" 1
ATOM 49 N N1 . DC A 1 3 ? -7.150 13.103 2.427 1.00 15.26 ? 3 DC A N1 1
ATOM 50 C C2 . DC A 1 3 ? -8.508 13.482 2.644 1.00 11.64 ? 3 DC A C2 1
ATOM 51 O O2 . DC A 1 3 ? -8.851 14.660 2.831 1.00 14.86 ? 3 DC A O2 1
ATOM 52 N N3 . DC A 1 3 ? -9.436 12.491 2.656 1.00 15.52 ? 3 DC A N3 1
ATOM 53 C C4 . DC A 1 3 ? -9.081 11.215 2.463 1.00 12.96 ? 3 DC A C4 1
ATOM 54 N N4 . DC A 1 3 ? -10.060 10.312 2.488 1.00 10.47 ? 3 DC A N4 1
ATOM 55 C C5 . DC A 1 3 ? -7.722 10.805 2.248 1.00 15.10 ? 3 DC A C5 1
ATOM 56 C C6 . DC A 1 3 ? -6.805 11.786 2.248 1.00 14.34 ? 3 DC A C6 1
ATOM 57 P P . DG A 1 4 ? -3.160 17.451 2.944 1.00 17.30 ? 4 DG A P 1
ATOM 58 O OP1 . DG A 1 4 ? -2.529 17.251 4.273 1.00 15.96 ? 4 DG A OP1 1
ATOM 59 O OP2 . DG A 1 4 ? -3.708 18.781 2.671 1.00 18.65 ? 4 DG A OP2 1
ATOM 60 O "O5'" . DG A 1 4 ? -2.133 16.946 1.833 1.00 17.82 ? 4 DG A "O5'" 1
ATOM 61 C "C5'" . DG A 1 4 ? -2.405 17.150 0.445 1.00 19.29 ? 4 DG A "C5'" 1
ATOM 62 C "C4'" . DG A 1 4 ? -1.401 16.562 -0.522 1.00 20.51 ? 4 DG A "C4'" 1
ATOM 63 O "O4'" . DG A 1 4 ? -1.184 15.146 -0.382 1.00 20.37 ? 4 DG A "O4'" 1
ATOM 64 C "C3'" . DG A 1 4 ? -1.951 16.713 -1.922 1.00 22.45 ? 4 DG A "C3'" 1
ATOM 65 O "O3'" . DG A 1 4 ? -1.499 17.922 -2.372 1.00 26.96 ? 4 DG A "O3'" 1
ATOM 66 C "C2'" . DG A 1 4 ? -1.393 15.571 -2.750 1.00 21.20 ? 4 DG A "C2'" 1
ATOM 67 C "C1'" . DG A 1 4 ? -1.264 14.525 -1.657 1.00 20.56 ? 4 DG A "C1'" 1
ATOM 68 N N9 . DG A 1 4 ? -2.315 13.509 -1.669 1.00 20.00 ? 4 DG A N9 1
ATOM 69 C C8 . DG A 1 4 ? -2.037 12.180 -1.817 1.00 20.20 ? 4 DG A C8 1
ATOM 70 N N7 . DG A 1 4 ? -3.062 11.398 -1.803 1.00 21.52 ? 4 DG A N7 1
ATOM 71 C C5 . DG A 1 4 ? -4.115 12.265 -1.638 1.00 20.53 ? 4 DG A C5 1
ATOM 72 C C6 . DG A 1 4 ? -5.486 11.946 -1.541 1.00 19.05 ? 4 DG A C6 1
ATOM 73 O O6 . DG A 1 4 ? -6.002 10.827 -1.608 1.00 19.14 ? 4 DG A O6 1
ATOM 74 N N1 . DG A 1 4 ? -6.265 13.078 -1.340 1.00 17.02 ? 4 DG A N1 1
ATOM 75 C C2 . DG A 1 4 ? -5.776 14.351 -1.296 1.00 15.41 ? 4 DG A C2 1
ATOM 76 N N2 . DG A 1 4 ? -6.711 15.272 -1.120 1.00 15.15 ? 4 DG A N2 1
ATOM 77 N N3 . DG A 1 4 ? -4.478 14.679 -1.362 1.00 16.63 ? 4 DG A N3 1
ATOM 78 C C4 . DG A 1 4 ? -3.690 13.581 -1.548 1.00 18.98 ? 4 DG A C4 1
ATOM 79 P P . DC A 1 5 ? -2.566 19.009 -2.819 1.00 30.14 ? 5 DC A P 1
ATOM 80 O OP1 . DC A 1 5 ? -1.754 20.127 -3.321 1.00 30.37 ? 5 DC A OP1 1
ATOM 81 O OP2 . DC A 1 5 ? -3.582 19.280 -1.774 1.00 29.67 ? 5 DC A OP2 1
ATOM 82 O "O5'" . DC A 1 5 ? -3.236 18.335 -4.106 1.00 26.21 ? 5 DC A "O5'" 1
ATOM 83 C "C5'" . DC A 1 5 ? -3.566 19.158 -5.216 1.00 21.76 ? 5 DC A "C5'" 1
ATOM 84 C "C4'" . DC A 1 5 ? -5.047 19.034 -5.512 1.00 18.60 ? 5 DC A "C4'" 1
ATOM 85 O "O4'" . DC A 1 5 ? -5.294 17.702 -6.042 1.00 18.31 ? 5 DC A "O4'" 1
ATOM 86 C "C3'" . DC A 1 5 ? -6.009 19.208 -4.340 1.00 17.27 ? 5 DC A "C3'" 1
ATOM 87 O "O3'" . DC A 1 5 ? -7.264 19.697 -4.796 1.00 18.37 ? 5 DC A "O3'" 1
ATOM 88 C "C2'" . DC A 1 5 ? -6.158 17.780 -3.826 1.00 18.80 ? 5 DC A "C2'" 1
ATOM 89 C "C1'" . DC A 1 5 ? -6.108 16.995 -5.121 1.00 17.84 ? 5 DC A "C1'" 1
ATOM 90 N N1 . DC A 1 5 ? -5.671 15.562 -5.004 1.00 18.88 ? 5 DC A N1 1
ATOM 91 C C2 . DC A 1 5 ? -6.667 14.591 -4.819 1.00 16.20 ? 5 DC A C2 1
ATOM 92 O O2 . DC A 1 5 ? -7.829 14.967 -4.720 1.00 12.47 ? 5 DC A O2 1
ATOM 93 N N3 . DC A 1 5 ? -6.337 13.286 -4.732 1.00 17.98 ? 5 DC A N3 1
ATOM 94 C C4 . DC A 1 5 ? -5.049 12.924 -4.831 1.00 16.14 ? 5 DC A C4 1
ATOM 95 N N4 . DC A 1 5 ? -4.772 11.627 -4.745 1.00 17.12 ? 5 DC A N4 1
ATOM 96 C C5 . DC A 1 5 ? -4.016 13.888 -5.025 1.00 18.06 ? 5 DC A C5 1
ATOM 97 C C6 . DC A 1 5 ? -4.365 15.187 -5.113 1.00 18.56 ? 5 DC A C6 1
ATOM 98 P P . DG A 1 6 ? -7.565 21.229 -4.618 1.00 20.76 ? 6 DG A P 1
ATOM 99 O OP1 . DG A 1 6 ? -7.148 21.707 -3.304 1.00 21.57 ? 6 DG A OP1 1
ATOM 100 O OP2 . DG A 1 6 ? -8.982 21.499 -4.946 1.00 20.70 ? 6 DG A OP2 1
ATOM 101 O "O5'" . DG A 1 6 ? -6.690 21.910 -5.756 1.00 21.41 ? 6 DG A "O5'" 1
ATOM 102 C "C5'" . DG A 1 6 ? -7.181 22.003 -7.087 1.00 23.72 ? 6 DG A "C5'" 1
ATOM 103 C "C4'" . DG A 1 6 ? -6.082 22.490 -8.011 1.00 25.35 ? 6 DG A "C4'" 1
ATOM 104 O "O4'" . DG A 1 6 ? -4.991 21.562 -7.864 1.00 25.99 ? 6 DG A "O4'" 1
ATOM 105 C "C3'" . DG A 1 6 ? -6.465 22.443 -9.492 1.00 25.48 ? 6 DG A "C3'" 1
ATOM 106 O "O3'" . DG A 1 6 ? -6.807 23.724 -10.031 1.00 27.28 ? 6 DG A "O3'" 1
ATOM 107 C "C2'" . DG A 1 6 ? -5.276 21.807 -10.227 1.00 24.59 ? 6 DG A "C2'" 1
ATOM 108 C "C1'" . DG A 1 6 ? -4.313 21.430 -9.112 1.00 23.62 ? 6 DG A "C1'" 1
ATOM 109 N N9 . DG A 1 6 ? -3.835 20.064 -9.186 1.00 23.43 ? 6 DG A N9 1
ATOM 110 C C8 . DG A 1 6 ? -2.546 19.690 -9.443 1.00 21.96 ? 6 DG A C8 1
ATOM 111 N N7 . DG A 1 6 ? -2.374 18.400 -9.423 1.00 21.34 ? 6 DG A N7 1
ATOM 112 C C5 . DG A 1 6 ? -3.634 17.877 -9.147 1.00 23.24 ? 6 DG A C5 1
ATOM 113 C C6 . DG A 1 6 ? -4.078 16.530 -8.991 1.00 22.82 ? 6 DG A C6 1
ATOM 114 O O6 . DG A 1 6 ? -3.440 15.474 -9.096 1.00 26.07 ? 6 DG A O6 1
ATOM 115 N N1 . DG A 1 6 ? -5.428 16.448 -8.700 1.00 23.51 ? 6 DG A N1 1
ATOM 116 C C2 . DG A 1 6 ? -6.267 17.532 -8.568 1.00 22.63 ? 6 DG A C2 1
ATOM 117 N N2 . DG A 1 6 ? -7.539 17.282 -8.263 1.00 24.66 ? 6 DG A N2 1
ATOM 118 N N3 . DG A 1 6 ? -5.875 18.787 -8.687 1.00 23.20 ? 6 DG A N3 1
ATOM 119 C C4 . DG A 1 6 ? -4.547 18.894 -8.989 1.00 22.55 ? 6 DG A C4 1
ATOM 120 O "O5'" . DC B 2 1 ? -9.880 8.842 -8.653 1.00 17.04 ? 7 DC B "O5'" 1
ATOM 121 C "C5'" . DC B 2 1 ? -10.660 8.994 -7.478 1.00 16.21 ? 7 DC B "C5'" 1
ATOM 122 C "C4'" . DC B 2 1 ? -11.002 10.452 -7.402 1.00 18.17 ? 7 DC B "C4'" 1
ATOM 123 O "O4'" . DC B 2 1 ? -9.812 11.136 -6.960 1.00 19.10 ? 7 DC B "O4'" 1
ATOM 124 C "C3'" . DC B 2 1 ? -11.403 11.123 -8.728 1.00 18.48 ? 7 DC B "C3'" 1
ATOM 125 O "O3'" . DC B 2 1 ? -12.347 12.112 -8.374 1.00 19.14 ? 7 DC B "O3'" 1
ATOM 126 C "C2'" . DC B 2 1 ? -10.098 11.750 -9.257 1.00 18.94 ? 7 DC B "C2'" 1
ATOM 127 C "C1'" . DC B 2 1 ? -9.419 12.107 -7.923 1.00 18.14 ? 7 DC B "C1'" 1
ATOM 128 N N1 . DC B 2 1 ? -7.917 12.257 -7.964 1.00 18.46 ? 7 DC B N1 1
ATOM 129 C C2 . DC B 2 1 ? -7.350 13.534 -8.003 1.00 15.64 ? 7 DC B C2 1
ATOM 130 O O2 . DC B 2 1 ? -8.063 14.540 -8.013 1.00 18.83 ? 7 DC B O2 1
ATOM 131 N N3 . DC B 2 1 ? -6.006 13.649 -8.041 1.00 18.12 ? 7 DC B N3 1
ATOM 132 C C4 . DC B 2 1 ? -5.224 12.576 -8.057 1.00 13.77 ? 7 DC B C4 1
ATOM 133 N N4 . DC B 2 1 ? -3.914 12.778 -8.095 1.00 15.68 ? 7 DC B N4 1
ATOM 134 C C5 . DC B 2 1 ? -5.781 11.272 -7.997 1.00 16.42 ? 7 DC B C5 1
ATOM 135 C C6 . DC B 2 1 ? -7.110 11.154 -7.939 1.00 15.74 ? 7 DC B C6 1
ATOM 136 P P . DG B 2 2 ? -13.910 11.815 -8.234 1.00 23.84 ? 8 DG B P 1
ATOM 137 O OP1 . DG B 2 2 ? -14.471 11.009 -9.345 1.00 23.74 ? 8 DG B OP1 1
ATOM 138 O OP2 . DG B 2 2 ? -14.507 13.105 -7.850 1.00 25.55 ? 8 DG B OP2 1
ATOM 139 O "O5'" . DG B 2 2 ? -13.907 10.901 -6.938 1.00 23.91 ? 8 DG B "O5'" 1
ATOM 140 C "C5'" . DG B 2 2 ? -14.367 11.429 -5.716 1.00 21.70 ? 8 DG B "C5'" 1
ATOM 141 C "C4'" . DG B 2 2 ? -14.631 10.278 -4.777 1.00 22.44 ? 8 DG B "C4'" 1
ATOM 142 O "O4'" . DG B 2 2 ? -13.605 9.285 -5.015 1.00 19.26 ? 8 DG B "O4'" 1
ATOM 143 C "C3'" . DG B 2 2 ? -14.461 10.713 -3.329 1.00 22.63 ? 8 DG B "C3'" 1
ATOM 144 O "O3'" . DG B 2 2 ? -15.685 10.855 -2.676 1.00 24.97 ? 8 DG B "O3'" 1
ATOM 145 C "C2'" . DG B 2 2 ? -13.783 9.543 -2.646 1.00 22.82 ? 8 DG B "C2'" 1
ATOM 146 C "C1'" . DG B 2 2 ? -13.139 8.785 -3.780 1.00 19.01 ? 8 DG B "C1'" 1
ATOM 147 N N9 . DG B 2 2 ? -11.700 8.847 -3.814 1.00 19.89 ? 8 DG B N9 1
ATOM 148 C C8 . DG B 2 2 ? -10.921 7.733 -3.744 1.00 16.17 ? 8 DG B C8 1
ATOM 149 N N7 . DG B 2 2 ? -9.665 8.008 -3.832 1.00 19.47 ? 8 DG B N7 1
ATOM 150 C C5 . DG B 2 2 ? -9.588 9.392 -3.971 1.00 20.10 ? 8 DG B C5 1
ATOM 151 C C6 . DG B 2 2 ? -8.455 10.246 -4.110 1.00 19.56 ? 8 DG B C6 1
ATOM 152 O O6 . DG B 2 2 ? -7.260 9.917 -4.139 1.00 21.03 ? 8 DG B O6 1
ATOM 153 N N1 . DG B 2 2 ? -8.817 11.595 -4.238 1.00 18.60 ? 8 DG B N1 1
ATOM 154 C C2 . DG B 2 2 ? -10.123 12.059 -4.219 1.00 16.24 ? 8 DG B C2 1
ATOM 155 N N2 . DG B 2 2 ? -10.342 13.385 -4.359 1.00 10.71 ? 8 DG B N2 1
ATOM 156 N N3 . DG B 2 2 ? -11.174 11.257 -4.092 1.00 18.90 ? 8 DG B N3 1
ATOM 157 C C4 . DG B 2 2 ? -10.852 9.938 -3.962 1.00 19.17 ? 8 DG B C4 1
ATOM 158 P P . DC B 2 3 ? -15.666 11.062 -1.040 0.50 25.26 ? 9 DC B P 1
ATOM 159 O OP1 . DC B 2 3 ? -14.661 10.279 -0.237 0.50 26.11 ? 9 DC B OP1 1
ATOM 160 O OP2 . DC B 2 3 ? -17.087 10.922 -0.623 0.50 26.86 ? 9 DC B OP2 1
ATOM 161 O "O5'" . DC B 2 3 ? -15.100 12.595 -1.199 1.00 25.37 ? 9 DC B "O5'" 1
ATOM 162 C "C5'" . DC B 2 3 ? -15.404 13.823 -0.418 1.00 22.14 ? 9 DC B "C5'" 1
ATOM 163 C "C4'" . DC B 2 3 ? -14.266 14.850 -0.219 1.00 20.35 ? 9 DC B "C4'" 1
ATOM 164 O "O4'" . DC B 2 3 ? -13.099 14.247 0.391 1.00 18.94 ? 9 DC B "O4'" 1
ATOM 165 C "C3'" . DC B 2 3 ? -13.740 15.652 -1.445 1.00 20.51 ? 9 DC B "C3'" 1
ATOM 166 O "O3'" . DC B 2 3 ? -13.329 17.028 -1.148 1.00 21.03 ? 9 DC B "O3'" 1
ATOM 167 C "C2'" . DC B 2 3 ? -12.494 14.876 -1.827 1.00 20.31 ? 9 DC B "C2'" 1
ATOM 168 C "C1'" . DC B 2 3 ? -11.970 14.457 -0.457 1.00 21.63 ? 9 DC B "C1'" 1
ATOM 169 N N1 . DC B 2 3 ? -11.137 13.217 -0.543 1.00 18.28 ? 9 DC B N1 1
ATOM 170 C C2 . DC B 2 3 ? -9.737 13.281 -0.615 1.00 19.83 ? 9 DC B C2 1
ATOM 171 O O2 . DC B 2 3 ? -9.179 14.374 -0.593 1.00 19.29 ? 9 DC B O2 1
ATOM 172 N N3 . DC B 2 3 ? -9.044 12.114 -0.694 1.00 18.65 ? 9 DC B N3 1
ATOM 173 C C4 . DC B 2 3 ? -9.713 10.948 -0.735 1.00 21.51 ? 9 DC B C4 1
ATOM 174 N N4 . DC B 2 3 ? -9.033 9.810 -0.802 1.00 23.54 ? 9 DC B N4 1
ATOM 175 C C5 . DC B 2 3 ? -11.127 10.857 -0.638 1.00 19.89 ? 9 DC B C5 1
ATOM 176 C C6 . DC B 2 3 ? -11.779 12.019 -0.560 1.00 20.16 ? 9 DC B C6 1
ATOM 177 P P . DG B 2 4 ? -14.416 18.207 -0.938 1.00 24.06 ? 10 DG B P 1
ATOM 178 O OP1 . DG B 2 4 ? -15.400 18.229 -2.046 1.00 19.37 ? 10 DG B OP1 1
ATOM 179 O OP2 . DG B 2 4 ? -13.684 19.433 -0.558 1.00 21.39 ? 10 DG B OP2 1
ATOM 180 O "O5'" . DG B 2 4 ? -15.212 17.675 0.350 1.00 23.66 ? 10 DG B "O5'" 1
ATOM 181 C "C5'" . DG B 2 4 ? -15.299 18.407 1.568 1.00 22.50 ? 10 DG B "C5'" 1
ATOM 182 C "C4'" . DG B 2 4 ? -16.275 17.776 2.557 1.00 20.28 ? 10 DG B "C4'" 1
ATOM 183 O "O4'" . DG B 2 4 ? -16.537 16.365 2.307 1.00 22.06 ? 10 DG B "O4'" 1
ATOM 184 C "C3'" . DG B 2 4 ? -15.781 17.841 3.985 1.00 18.38 ? 10 DG B "C3'" 1
ATOM 185 O "O3'" . DG B 2 4 ? -16.145 19.130 4.475 1.00 17.79 ? 10 DG B "O3'" 1
ATOM 186 C "C2'" . DG B 2 4 ? -16.501 16.683 4.683 1.00 18.35 ? 10 DG B "C2'" 1
ATOM 187 C "C1'" . DG B 2 4 ? -16.774 15.698 3.553 1.00 17.77 ? 10 DG B "C1'" 1
ATOM 188 N N9 . DG B 2 4 ? -15.969 14.490 3.471 1.00 17.90 ? 10 DG B N9 1
ATOM 189 C C8 . DG B 2 4 ? -16.484 13.219 3.447 1.00 16.69 ? 10 DG B C8 1
ATOM 190 N N7 . DG B 2 4 ? -15.580 12.299 3.328 1.00 17.99 ? 10 DG B N7 1
ATOM 191 C C5 . DG B 2 4 ? -14.381 13.003 3.269 1.00 17.18 ? 10 DG B C5 1
ATOM 192 C C6 . DG B 2 4 ? -13.044 12.516 3.159 1.00 18.91 ? 10 DG B C6 1
ATOM 193 O O6 . DG B 2 4 ? -12.681 11.325 3.046 1.00 18.17 ? 10 DG B O6 1
ATOM 194 N N1 . DG B 2 4 ? -12.102 13.562 3.144 1.00 18.19 ? 10 DG B N1 1
ATOM 195 C C2 . DG B 2 4 ? -12.399 14.898 3.219 1.00 16.00 ? 10 DG B C2 1
ATOM 196 N N2 . DG B 2 4 ? -11.383 15.765 3.186 1.00 15.52 ? 10 DG B N2 1
ATOM 197 N N3 . DG B 2 4 ? -13.635 15.354 3.333 1.00 17.16 ? 10 DG B N3 1
ATOM 198 C C4 . DG B 2 4 ? -14.586 14.362 3.365 1.00 17.92 ? 10 DG B C4 1
ATOM 199 P P . DT B 2 5 ? -15.066 20.227 4.942 1.00 21.93 ? 11 DT B P 1
ATOM 200 O OP1 . DT B 2 5 ? -15.814 21.303 5.594 1.00 19.65 ? 11 DT B OP1 1
ATOM 201 O OP2 . DT B 2 5 ? -14.152 20.558 3.831 1.00 19.32 ? 11 DT B OP2 1
ATOM 202 O "O5'" . DT B 2 5 ? -14.287 19.469 6.125 1.00 20.39 ? 11 DT B "O5'" 1
ATOM 203 C "C5'" . DT B 2 5 ? -13.534 20.199 7.130 1.00 19.91 ? 11 DT B "C5'" 1
ATOM 204 C "C4'" . DT B 2 5 ? -12.135 19.619 7.271 1.00 19.65 ? 11 DT B "C4'" 1
ATOM 205 O "O4'" . DT B 2 5 ? -12.205 18.270 7.753 1.00 15.86 ? 11 DT B "O4'" 1
ATOM 206 C "C3'" . DT B 2 5 ? -11.295 19.584 6.000 1.00 19.98 ? 11 DT B "C3'" 1
ATOM 207 O "O3'" . DT B 2 5 ? -9.971 20.064 6.333 1.00 20.51 ? 11 DT B "O3'" 1
ATOM 208 C "C2'" . DT B 2 5 ? -11.361 18.118 5.565 1.00 18.10 ? 11 DT B "C2'" 1
ATOM 209 C "C1'" . DT B 2 5 ? -11.513 17.395 6.904 1.00 17.71 ? 11 DT B "C1'" 1
ATOM 210 N N1 . DT B 2 5 ? -12.210 16.029 6.892 1.00 18.15 ? 11 DT B N1 1
ATOM 211 C C2 . DT B 2 5 ? -11.396 14.917 6.781 1.00 18.63 ? 11 DT B C2 1
ATOM 212 O O2 . DT B 2 5 ? -10.186 14.987 6.685 1.00 18.63 ? 11 DT B O2 1
ATOM 213 N N3 . DT B 2 5 ? -12.033 13.695 6.783 1.00 20.87 ? 11 DT B N3 1
ATOM 214 C C4 . DT B 2 5 ? -13.400 13.468 6.885 1.00 20.38 ? 11 DT B C4 1
ATOM 215 O O4 . DT B 2 5 ? -13.878 12.335 6.890 1.00 23.07 ? 11 DT B O4 1
ATOM 216 C C5 . DT B 2 5 ? -14.215 14.663 7.019 1.00 20.64 ? 11 DT B C5 1
ATOM 217 C C7 . DT B 2 5 ? -15.706 14.494 7.145 1.00 23.94 ? 11 DT B C7 1
ATOM 218 C C6 . DT B 2 5 ? -13.600 15.864 7.020 1.00 17.35 ? 11 DT B C6 1
ATOM 219 P P . DG B 2 6 ? -9.588 21.631 6.334 1.00 24.90 ? 12 DG B P 1
ATOM 220 O OP1 . DG B 2 6 ? -10.223 22.415 5.257 1.00 23.02 ? 12 DG B OP1 1
ATOM 221 O OP2 . DG B 2 6 ? -8.123 21.641 6.550 1.00 25.01 ? 12 DG B OP2 1
ATOM 222 O "O5'" . DG B 2 6 ? -10.267 22.177 7.646 1.00 20.59 ? 12 DG B "O5'" 1
ATOM 223 C "C5'" . DG B 2 6 ? -9.891 21.647 8.866 1.00 15.23 ? 12 DG B "C5'" 1
ATOM 224 C "C4'" . DG B 2 6 ? -10.306 22.657 9.904 1.00 18.21 ? 12 DG B "C4'" 1
ATOM 225 O "O4'" . DG B 2 6 ? -11.757 22.685 9.902 1.00 19.02 ? 12 DG B "O4'" 1
ATOM 226 C "C3'" . DG B 2 6 ? -9.858 22.270 11.301 1.00 17.82 ? 12 DG B "C3'" 1
ATOM 227 O "O3'" . DG B 2 6 ? -9.134 23.365 11.907 1.00 21.52 ? 12 DG B "O3'" 1
ATOM 228 C "C2'" . DG B 2 6 ? -11.130 22.008 12.078 1.00 17.13 ? 12 DG B "C2'" 1
ATOM 229 C "C1'" . DG B 2 6 ? -12.294 22.228 11.131 1.00 14.74 ? 12 DG B "C1'" 1
ATOM 230 N N9 . DG B 2 6 ? -13.073 21.002 10.997 1.00 14.89 ? 12 DG B N9 1
ATOM 231 C C8 . DG B 2 6 ? -14.444 20.876 11.029 1.00 12.50 ? 12 DG B C8 1
ATOM 232 N N7 . DG B 2 6 ? -14.855 19.649 10.873 1.00 14.02 ? 12 DG B N7 1
ATOM 233 C C5 . DG B 2 6 ? -13.696 18.905 10.738 1.00 14.83 ? 12 DG B C5 1
ATOM 234 C C6 . DG B 2 6 ? -13.525 17.519 10.539 1.00 15.52 ? 12 DG B C6 1
ATOM 235 O O6 . DG B 2 6 ? -14.439 16.683 10.460 1.00 15.92 ? 12 DG B O6 1
ATOM 236 N N1 . DG B 2 6 ? -12.153 17.149 10.455 1.00 17.80 ? 12 DG B N1 1
ATOM 237 C C2 . DG B 2 6 ? -11.091 18.038 10.525 1.00 16.79 ? 12 DG B C2 1
ATOM 238 N N2 . DG B 2 6 ? -9.808 17.603 10.409 1.00 8.80 ? 12 DG B N2 1
ATOM 239 N N3 . DG B 2 6 ? -11.285 19.342 10.685 1.00 15.22 ? 12 DG B N3 1
ATOM 240 C C4 . DG B 2 6 ? -12.591 19.713 10.794 1.00 14.25 ? 12 DG B C4 1
ATOM 241 P P . DT C 3 1 ? -6.843 -4.419 -0.672 0.83 20.87 ? 13 DT C P 1
ATOM 242 O OP1 . DT C 3 1 ? -7.865 -3.520 -1.319 0.83 21.01 ? 13 DT C OP1 1
ATOM 243 O OP2 . DT C 3 1 ? -7.063 -5.854 -0.537 0.83 23.35 ? 13 DT C OP2 1
ATOM 244 O "O5'" . DT C 3 1 ? -5.419 -3.988 -0.923 1.00 13.95 ? 13 DT C "O5'" 1
ATOM 245 C "C5'" . DT C 3 1 ? -4.630 -4.972 -1.589 1.00 15.07 ? 13 DT C "C5'" 1
ATOM 246 C "C4'" . DT C 3 1 ? -3.248 -4.470 -1.889 1.00 15.41 ? 13 DT C "C4'" 1
ATOM 247 O "O4'" . DT C 3 1 ? -3.451 -3.121 -2.356 1.00 14.08 ? 13 DT C "O4'" 1
ATOM 248 C "C3'" . DT C 3 1 ? -2.315 -4.453 -0.695 1.00 18.53 ? 13 DT C "C3'" 1
ATOM 249 O "O3'" . DT C 3 1 ? -0.962 -4.895 -1.048 1.00 19.18 ? 13 DT C "O3'" 1
ATOM 250 C "C2'" . DT C 3 1 ? -2.345 -2.985 -0.310 1.00 18.73 ? 13 DT C "C2'" 1
ATOM 251 C "C1'" . DT C 3 1 ? -2.504 -2.318 -1.684 1.00 16.47 ? 13 DT C "C1'" 1
ATOM 252 N N1 . DT C 3 1 ? -3.031 -0.947 -1.587 1.00 16.11 ? 13 DT C N1 1
ATOM 253 C C2 . DT C 3 1 ? -2.170 0.083 -1.293 1.00 12.95 ? 13 DT C C2 1
ATOM 254 O O2 . DT C 3 1 ? -0.967 -0.070 -1.112 1.00 15.30 ? 13 DT C O2 1
ATOM 255 N N3 . DT C 3 1 ? -2.742 1.285 -1.219 1.00 12.16 ? 13 DT C N3 1
ATOM 256 C C4 . DT C 3 1 ? -4.069 1.577 -1.387 1.00 14.32 ? 13 DT C C4 1
ATOM 257 O O4 . DT C 3 1 ? -4.451 2.718 -1.277 1.00 19.22 ? 13 DT C O4 1
ATOM 258 C C5 . DT C 3 1 ? -4.937 0.459 -1.713 1.00 15.17 ? 13 DT C C5 1
ATOM 259 C C7 . DT C 3 1 ? -6.415 0.606 -1.933 0.17 15.32 ? 13 DT C C7 1
ATOM 260 C C6 . DT C 3 1 ? -4.379 -0.737 -1.793 1.00 14.43 ? 13 DT C C6 1
ATOM 261 P P . DG C 3 2 ? -0.458 -6.369 -0.720 1.00 22.34 ? 14 DG C P 1
ATOM 262 O OP1 . DG C 3 2 ? -1.200 -6.868 0.457 1.00 19.00 ? 14 DG C OP1 1
ATOM 263 O OP2 . DG C 3 2 ? 1.006 -6.412 -0.751 1.00 22.14 ? 14 DG C OP2 1
ATOM 264 O "O5'" . DG C 3 2 ? -1.064 -7.163 -1.979 1.00 19.11 ? 14 DG C "O5'" 1
ATOM 265 C "C5'" . DG C 3 2 ? -0.909 -6.709 -3.313 1.00 16.48 ? 14 DG C "C5'" 1
ATOM 266 C "C4'" . DG C 3 2 ? -1.739 -7.540 -4.277 1.00 14.19 ? 14 DG C "C4'" 1
ATOM 267 O "O4'" . DG C 3 2 ? -3.144 -7.160 -4.225 1.00 13.98 ? 14 DG C "O4'" 1
ATOM 268 C "C3'" . DG C 3 2 ? -1.296 -7.198 -5.676 1.00 14.33 ? 14 DG C "C3'" 1
ATOM 269 O "O3'" . DG C 3 2 ? -0.571 -8.257 -6.002 1.00 17.42 ? 14 DG C "O3'" 1
ATOM 270 C "C2'" . DG C 3 2 ? -2.564 -7.138 -6.515 1.00 13.92 ? 14 DG C "C2'" 1
ATOM 271 C "C1'" . DG C 3 2 ? -3.692 -6.986 -5.505 1.00 13.42 ? 14 DG C "C1'" 1
ATOM 272 N N9 . DG C 3 2 ? -4.354 -5.655 -5.524 1.00 14.39 ? 14 DG C N9 1
ATOM 273 C C8 . DG C 3 2 ? -5.711 -5.465 -5.630 1.00 14.16 ? 14 DG C C8 1
ATOM 274 N N7 . DG C 3 2 ? -6.084 -4.224 -5.605 1.00 14.25 ? 14 DG C N7 1
ATOM 275 C C5 . DG C 3 2 ? -4.899 -3.531 -5.465 1.00 13.95 ? 14 DG C C5 1
ATOM 276 C C6 . DG C 3 2 ? -4.699 -2.137 -5.383 1.00 14.25 ? 14 DG C C6 1
ATOM 277 O O6 . DG C 3 2 ? -5.555 -1.244 -5.433 1.00 15.85 ? 14 DG C O6 1
ATOM 278 N N1 . DG C 3 2 ? -3.357 -1.812 -5.214 1.00 11.62 ? 14 DG C N1 1
ATOM 279 C C2 . DG C 3 2 ? -2.322 -2.720 -5.166 1.00 13.01 ? 14 DG C C2 1
ATOM 280 N N2 . DG C 3 2 ? -1.096 -2.210 -5.001 0.83 11.88 ? 14 DG C N2 1
ATOM 281 N N3 . DG C 3 2 ? -2.494 -4.036 -5.241 1.00 12.03 ? 14 DG C N3 1
ATOM 282 C C4 . DG C 3 2 ? -3.810 -4.385 -5.412 1.00 11.97 ? 14 DG C C4 1
ATOM 283 O "O5'" . DT D 3 1 ? 0.065 6.667 -5.170 1.00 16.88 ? 15 DT D "O5'" 1
ATOM 284 C "C5'" . DT D 3 1 ? 0.954 6.430 -4.030 1.00 12.12 ? 15 DT D "C5'" 1
ATOM 285 C "C4'" . DT D 3 1 ? 1.455 4.996 -3.827 1.00 13.56 ? 15 DT D "C4'" 1
ATOM 286 O "O4'" . DT D 3 1 ? 0.401 4.111 -3.359 1.00 15.63 ? 15 DT D "O4'" 1
ATOM 287 C "C3'" . DT D 3 1 ? 2.055 4.334 -5.070 1.00 12.96 ? 15 DT D "C3'" 1
ATOM 288 O "O3'" . DT D 3 1 ? 3.126 3.511 -4.705 1.00 17.80 ? 15 DT D "O3'" 1
ATOM 289 C "C2'" . DT D 3 1 ? 0.914 3.423 -5.542 1.00 12.43 ? 15 DT D "C2'" 1
ATOM 290 C "C1'" . DT D 3 1 ? 0.299 2.981 -4.203 1.00 10.83 ? 15 DT D "C1'" 1
ATOM 291 N N1 . DT D 3 1 ? -1.143 2.572 -4.352 1.00 11.94 ? 15 DT D N1 1
ATOM 292 C C2 . DT D 3 1 ? -1.483 1.255 -4.588 1.00 2.76 ? 15 DT D C2 1
ATOM 293 O O2 . DT D 3 1 ? -0.640 0.382 -4.692 1.00 13.06 ? 15 DT D O2 1
ATOM 294 N N3 . DT D 3 1 ? -2.832 1.000 -4.700 1.00 12.06 ? 15 DT D N3 1
ATOM 295 C C4 . DT D 3 1 ? -3.847 1.933 -4.630 1.00 8.95 ? 15 DT D C4 1
ATOM 296 O O4 . DT D 3 1 ? -5.038 1.639 -4.745 1.00 13.46 ? 15 DT D O4 1
ATOM 297 C C5 . DT D 3 1 ? -3.419 3.266 -4.365 1.00 11.09 ? 15 DT D C5 1
ATOM 298 C C7 . DT D 3 1 ? -4.441 4.359 -4.238 0.17 9.60 ? 15 DT D C7 1
ATOM 299 C C6 . DT D 3 1 ? -2.103 3.543 -4.224 1.00 7.71 ? 15 DT D C6 1
ATOM 300 P P . DG D 3 2 ? 4.644 4.021 -4.765 1.00 18.47 ? 16 DG D P 1
ATOM 301 O OP1 . DG D 3 2 ? 4.869 4.674 -6.061 1.00 19.50 ? 16 DG D OP1 1
ATOM 302 O OP2 . DG D 3 2 ? 5.454 2.861 -4.337 1.00 21.30 ? 16 DG D OP2 1
ATOM 303 O "O5'" . DG D 3 2 ? 4.697 5.032 -3.522 1.00 19.79 ? 16 DG D "O5'" 1
ATOM 304 C "C5'" . DG D 3 2 ? 4.728 4.458 -2.204 1.00 15.19 ? 16 DG D "C5'" 1
ATOM 305 C "C4'" . DG D 3 2 ? 4.766 5.569 -1.189 1.00 16.93 ? 16 DG D "C4'" 1
ATOM 306 O "O4'" . DG D 3 2 ? 3.772 6.557 -1.534 1.00 17.34 ? 16 DG D "O4'" 1
ATOM 307 C "C3'" . DG D 3 2 ? 4.455 5.104 0.225 1.00 15.07 ? 16 DG D "C3'" 1
ATOM 308 O "O3'" . DG D 3 2 ? 5.695 4.994 0.847 1.00 18.97 ? 16 DG D "O3'" 1
ATOM 309 C "C2'" . DG D 3 2 ? 3.647 6.235 0.844 1.00 15.42 ? 16 DG D "C2'" 1
ATOM 310 C "C1'" . DG D 3 2 ? 3.014 6.909 -0.375 1.00 16.61 ? 16 DG D "C1'" 1
ATOM 311 N N9 . DG D 3 2 ? 1.583 6.643 -0.574 1.00 14.93 ? 16 DG D N9 1
ATOM 312 C C8 . DG D 3 2 ? 0.660 7.626 -0.728 1.00 11.89 ? 16 DG D C8 1
ATOM 313 N N7 . DG D 3 2 ? -0.542 7.202 -0.872 1.00 15.70 ? 16 DG D N7 1
ATOM 314 C C5 . DG D 3 2 ? -0.444 5.834 -0.815 1.00 15.45 ? 16 DG D C5 1
ATOM 315 C C6 . DG D 3 2 ? -1.454 4.836 -0.887 1.00 17.38 ? 16 DG D C6 1
ATOM 316 O O6 . DG D 3 2 ? -2.662 4.986 -1.062 1.00 19.03 ? 16 DG D O6 1
ATOM 317 N N1 . DG D 3 2 ? -0.919 3.555 -0.750 1.00 19.30 ? 16 DG D N1 1
ATOM 318 C C2 . DG D 3 2 ? 0.419 3.287 -0.551 1.00 16.39 ? 16 DG D C2 1
ATOM 319 N N2 . DG D 3 2 ? 0.781 2.010 -0.445 0.83 17.94 ? 16 DG D N2 1
ATOM 320 N N3 . DG D 3 2 ? 1.360 4.222 -0.472 1.00 17.33 ? 16 DG D N3 1
ATOM 321 C C4 . DG D 3 2 ? 0.866 5.473 -0.604 1.00 13.49 ? 16 DG D C4 1
HETATM 322 MN MN A MN E 4 . ? -4.236 8.935 -0.708 0.65 24.81 ? 101 MN A MN 1
HETATM 323 MN MN B MN E 4 . ? -3.516 7.372 -1.489 0.35 26.77 ? 101 MN A MN 1
HETATM 324 O O . HOH F 5 . ? -9.295 18.929 -8.327 1.00 26.71 ? 201 HOH A O 1
HETATM 325 O O . HOH F 5 . ? -4.602 8.997 -7.078 1.00 18.07 ? 202 HOH A O 1
HETATM 326 O O . HOH F 5 . ? -5.869 17.685 -0.751 1.00 21.16 ? 203 HOH A O 1
HETATM 327 O O . HOH F 5 . ? -4.551 17.825 5.750 1.00 17.62 ? 204 HOH A O 1
HETATM 328 O O . HOH F 5 . ? -5.334 14.254 6.928 1.00 23.31 ? 205 HOH A O 1
HETATM 329 O O . HOH F 5 . ? -13.450 6.943 9.482 1.00 29.38 ? 206 HOH A O 1
HETATM 330 O O . HOH F 5 . ? -2.781 20.977 2.674 1.00 31.29 ? 207 HOH A O 1
HETATM 331 O O . HOH F 5 . ? -8.456 17.089 3.726 1.00 30.45 ? 208 HOH A O 1
HETATM 332 O O . HOH F 5 . ? -15.935 11.225 10.043 1.00 21.46 ? 209 HOH A O 1
HETATM 333 O O . HOH F 5 . ? -12.011 8.268 7.077 1.00 11.91 ? 210 HOH A O 1
HETATM 334 O O . HOH F 5 . ? -0.671 13.924 7.138 1.00 19.55 ? 211 HOH A O 1
HETATM 335 O O . HOH F 5 . ? -9.245 7.094 2.717 1.00 32.80 ? 212 HOH A O 1
HETATM 336 O O . HOH F 5 . ? -14.164 15.689 -8.429 0.50 10.84 ? 213 HOH A O 1
HETATM 337 O O . HOH F 5 . ? -14.931 17.026 -5.750 1.00 25.90 ? 214 HOH A O 1
HETATM 338 O O . HOH F 5 . ? -11.275 17.085 -8.868 1.00 25.87 ? 215 HOH A O 1
HETATM 339 O O . HOH G 5 . ? -4.359 21.698 6.129 1.00 20.49 ? 101 HOH B O 1
HETATM 340 O O . HOH G 5 . ? -6.535 22.261 3.427 1.00 23.35 ? 102 HOH B O 1
HETATM 341 O O . HOH G 5 . ? -8.870 25.277 3.017 1.00 27.55 ? 103 HOH B O 1
HETATM 342 O O . HOH G 5 . ? -10.812 8.698 -10.889 1.00 14.87 ? 104 HOH B O 1
HETATM 343 O O . HOH G 5 . ? -15.269 23.172 3.795 1.00 23.10 ? 105 HOH B O 1
HETATM 344 O O . HOH G 5 . ? -13.810 8.862 -12.708 1.00 23.93 ? 106 HOH B O 1
HETATM 345 O O . HOH G 5 . ? -10.351 20.954 2.059 1.00 23.41 ? 107 HOH B O 1
HETATM 346 O O . HOH G 5 . ? -13.016 23.413 7.666 1.00 17.86 ? 108 HOH B O 1
HETATM 347 O O . HOH G 5 . ? -10.780 20.807 -1.008 1.00 35.19 ? 109 HOH B O 1
HETATM 348 O O . HOH H 5 . ? -4.180 -9.366 0.063 1.00 10.66 ? 101 HOH C O 1
HETATM 349 O O . HOH H 5 . ? -4.586 -8.376 -2.569 1.00 19.86 ? 102 HOH C O 1
HETATM 350 O O . HOH H 5 . ? -3.144 -7.855 3.406 1.00 27.27 ? 103 HOH C O 1
HETATM 351 O O . HOH H 5 . ? -7.300 3.072 -1.783 1.00 12.66 ? 104 HOH C O 1
HETATM 352 O O . HOH H 5 . ? 0.655 -2.981 -2.634 1.00 25.57 ? 105 HOH C O 1
HETATM 353 O O . HOH H 5 . ? 0.953 -6.890 1.991 0.50 33.12 ? 106 HOH C O 1
HETATM 354 O O . HOH I 5 . ? 0.911 -1.169 1.465 1.00 14.65 ? 101 HOH D O 1
HETATM 355 O O . HOH I 5 . ? 7.933 4.566 -1.651 1.00 25.89 ? 102 HOH D O 1
HETATM 356 O O . HOH I 5 . ? 8.385 6.469 2.556 1.00 18.40 ? 103 HOH D O 1
HETATM 357 O O . HOH I 5 . ? 3.727 0.631 -1.831 1.00 26.25 ? 104 HOH D O 1
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