data_482D
#
_entry.id 482D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 482D pdb_0000482d 10.2210/pdb482d/pdb
NDB DD0017 ? ?
RCSB RCSB001323 ? ?
WWPDB D_1000001323 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1999-09-15
2 'Structure model' 1 1 2008-04-26
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2023-12-27
5 'Structure model' 1 4 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' struct_site
5 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 482D
_pdbx_database_status.recvd_initial_deposition_date 1999-07-27
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Saminadin, P.' 1
'Dautant, A.' 2
'Mondon, M.' 3
;Langlois D'Estaintot, B.
;
4
'Courseille, C.' 5
'Precigoux, G.' 6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
'Release of the cyano moiety in the crystal structure of N-cyanomethyl-N-(2-methoxyethyl)-daunomycin complexed with d(CGATCG).'
Eur.J.Biochem. 267 457 464 2000 EJBCAI IX 0014-2956 0262 ? 10632715 10.1046/j.1432-1327.2000.01017.x
1 'Degradation of the Morpholino Ring in the Crystal Structure of Cyanomorpholinodoxorubicin' Eur.J.Biochem. 258 350 354
1998 EJBCAI IX 0014-2956 0262 ? ? 10.1046/j.1432-1327.1998.2580350.x
2 'Structural Comparison of Anticancer Drug-DNA Complexes. Adriamycin and Daunomycin' Biochemistry 29 2538 2549 1990
BICHAW US 0006-2960 0033 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Saminadin, P.' 1 ?
primary 'Dautant, A.' 2 ?
primary 'Mondon, M.' 3 ?
primary
;Langlois D'estaintot, B.
;
4 ?
primary 'Courseille, C.' 5 ?
primary 'Precigoux, G.' 6 ?
1 'Ettorre, A.' 7 ?
1 'Cirilli, M.' 8 ?
1 'Ughetto, G.' 9 ?
2 'Frederick, C.A.' 10 ?
2 'Williams, L.D.' 11 ?
2 'Ughetto, G.' 12 ?
2 'Van Der Marel, G.A.' 13 ?
2 'Van Boom, J.H.' 14 ?
2 'Rich, A.' 15 ?
2 'Wang, A.H.-J.' 16 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*AP*TP*CP*G)-3'" 1809.217 1 ? ? ? 'COMPLEXED WITH (2-METHOXYETHYL)-DAUNOMYCIN'
2 non-polymer syn 'N-HYDROXYMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN' 617.641 1 ? ? ? ?
3 water nat water 18.015 25 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGATCG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'N-HYDROXYMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN' DM9
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DA n
1 4 DT n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DM9 non-polymer . 'N-HYDROXYMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN' ? 'C31 H39 N O12' 617.641
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC C A . n
A 1 2 DG 2 2 2 DG G A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DC 5 5 5 DC C A . n
A 1 6 DG 6 6 6 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DM9 1 7 7 DM9 DM9 A .
C 3 HOH 1 8 8 HOH HOH A .
C 3 HOH 2 9 9 HOH HOH A .
C 3 HOH 3 10 10 HOH HOH A .
C 3 HOH 4 11 11 HOH HOH A .
C 3 HOH 5 12 12 HOH HOH A .
C 3 HOH 6 13 13 HOH HOH A .
C 3 HOH 7 14 14 HOH HOH A .
C 3 HOH 8 15 15 HOH HOH A .
C 3 HOH 9 16 16 HOH HOH A .
C 3 HOH 10 17 17 HOH HOH A .
C 3 HOH 11 18 18 HOH HOH A .
C 3 HOH 12 19 19 HOH HOH A .
C 3 HOH 13 20 20 HOH HOH A .
C 3 HOH 14 21 21 HOH HOH A .
C 3 HOH 15 22 22 HOH HOH A .
C 3 HOH 16 23 23 HOH HOH A .
C 3 HOH 17 24 24 HOH HOH A .
C 3 HOH 18 25 25 HOH HOH A .
C 3 HOH 19 26 26 HOH HOH A .
C 3 HOH 20 27 27 HOH HOH A .
C 3 HOH 21 28 28 HOH HOH A .
C 3 HOH 22 29 29 HOH HOH A .
C 3 HOH 23 30 30 HOH HOH A .
C 3 HOH 24 31 31 HOH HOH A .
C 3 HOH 25 32 32 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
AMoRE phasing . ? 1
X-PLOR refinement . ? 2
MOSFLM 'data reduction' . ? 3
CCP4 'data scaling' '(SCALA)' ? 4
#
_cell.entry_id 482D
_cell.length_a 28.160
_cell.length_b 28.160
_cell.length_c 53.400
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 482D
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting tetragonal
_symmetry.Int_Tables_number 92
#
_exptl.entry_id 482D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.24
_exptl_crystal.density_percent_sol 44.5
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 277
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.5
_exptl_crystal_grow.pdbx_details
;CRYSTALS WERE OBTAINED FROM A SOLUTION THAT CONTAINED MPD, LICL, MGCL2, SODIUM CACODYLATE, COBALT HEXAMINE, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 MPD ? ? ?
1 2 1 LICL ? ? ?
1 3 1 MGCL2 ? ? ?
1 4 1 'SODIUM CACODYLATE' ? ? ?
1 5 1 '[CO(NH3)6]CL3' ? ? ?
1 6 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 277.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 1999-06-15
_diffrn_detector.details COLLIMATOR
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'GRAPHITE CRYSTAL'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'ENRAF-NONIUS FR571'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 482D
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 12.60
_reflns.d_resolution_high 1.54
_reflns.number_obs 3327
_reflns.number_all ?
_reflns.percent_possible_obs 95.5
_reflns.pdbx_Rmerge_I_obs 0.0460000
_reflns.pdbx_Rsym_value 0.0460000
_reflns.pdbx_netI_over_sigmaI 9.6
_reflns.B_iso_Wilson_estimate 15.3
_reflns.pdbx_redundancy 3.9
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.54
_reflns_shell.d_res_low 1.57
_reflns_shell.percent_possible_all 92.3
_reflns_shell.Rmerge_I_obs 0.1580000
_reflns_shell.pdbx_Rsym_value 0.1580000
_reflns_shell.meanI_over_sigI_obs 3.9
_reflns_shell.pdbx_redundancy 3.8
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 482D
_refine.ls_number_reflns_obs 3220
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 12.60
_refine.ls_d_res_high 1.54
_refine.ls_percent_reflns_obs 92.0
_refine.ls_R_factor_obs 0.2300000
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.2300000
_refine.ls_R_factor_R_free 0.2800000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.0
_refine.ls_number_reflns_R_free 136
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean 19.9
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'SEE REMARK 1 REFERENCE 2'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 44
_refine_hist.number_atoms_solvent 25
_refine_hist.number_atoms_total 189
_refine_hist.d_res_high 1.54
_refine_hist.d_res_low 12.60
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 1.386 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d 0.601 ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d 0.996 ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 15
_refine_ls_shell.d_res_high 1.54
_refine_ls_shell.d_res_low 1.58
_refine_ls_shell.number_reflns_R_work 181
_refine_ls_shell.R_factor_R_work 0.2300000
_refine_ls_shell.percent_reflns_obs 84.0
_refine_ls_shell.R_factor_R_free 0.4300000
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free 10.0
_refine_ls_shell.number_reflns_R_free 6
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
#
_database_PDB_matrix.entry_id 482D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 482D
_struct.title
'RELEASE OF THE CYANO MOIETY IN THE CRYSTAL STRUCTURE OF N-CYANOMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN COMPLEXED WITH D(CGATCG)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 482D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DEOXYRIBONUCLEIC ACID, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 482D
_struct_ref.pdbx_db_accession 482D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 482D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 482D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 6
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.1600000000 -1.0000000000
0.0000000000 0.0000000000 28.1600000000 0.0000000000 0.0000000000 -1.0000000000 26.7000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DM9 7 ? 11 'BINDING SITE FOR RESIDUE DM9 A 7'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 11 DC A 1 ? DC A 1 . ? 8_665 ?
2 AC1 11 DG A 2 ? DG A 2 . ? 8_665 ?
3 AC1 11 DA A 3 ? DA A 3 . ? 8_665 ?
4 AC1 11 DT A 4 ? DT A 4 . ? 8_665 ?
5 AC1 11 DT A 4 ? DT A 4 . ? 1_555 ?
6 AC1 11 DC A 5 ? DC A 5 . ? 1_555 ?
7 AC1 11 DG A 6 ? DG A 6 . ? 1_555 ?
8 AC1 11 HOH C . ? HOH A 8 . ? 1_555 ?
9 AC1 11 HOH C . ? HOH A 12 . ? 8_665 ?
10 AC1 11 HOH C . ? HOH A 14 . ? 1_555 ?
11 AC1 11 HOH C . ? HOH A 29 . ? 1_555 ?
#
_pdbx_validate_planes.id 1
_pdbx_validate_planes.PDB_model_num 1
_pdbx_validate_planes.auth_comp_id DC
_pdbx_validate_planes.auth_asym_id A
_pdbx_validate_planes.auth_seq_id 5
_pdbx_validate_planes.PDB_ins_code ?
_pdbx_validate_planes.label_alt_id ?
_pdbx_validate_planes.rmsd 0.080
_pdbx_validate_planes.type 'SIDE CHAIN'
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text 'INTERCALATION, GROOVE BINDER'
#
_pdbx_entry_details.entry_id 482D
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details
;N-CYANOMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN WAS USED
IN CRYSTALLIZATION SET-UP. DEGRADATION OF THIS COMPOUND
GAVE RISE TO N-HYDROXYMETHYL-N(-2-METHOXYETHYL)-DAUNOMYCIN.
;
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DM9 C1 C Y N 108
DM9 C2 C Y N 109
DM9 C3 C Y N 110
DM9 C4 C Y N 111
DM9 O4 O N N 112
DM9 C5 C Y N 113
DM9 O5 O N N 114
DM9 C6 C Y N 115
DM9 O6 O N N 116
DM9 C7 C N S 117
DM9 O7 O N N 118
DM9 C8 C N N 119
DM9 C9 C N S 120
DM9 O9 O N N 121
DM9 C10 C N N 122
DM9 C11 C Y N 123
DM9 O11 O N N 124
DM9 C12 C Y N 125
DM9 O12 O N N 126
DM9 C13 C N N 127
DM9 O13 O N N 128
DM9 C14 C N N 129
DM9 C15 C Y N 130
DM9 C16 C Y N 131
DM9 C17 C Y N 132
DM9 C18 C Y N 133
DM9 C19 C Y N 134
DM9 C20 C Y N 135
DM9 C21 C N N 136
DM9 "C1'" C N R 137
DM9 "C2'" C N N 138
DM9 "C3'" C N S 139
DM9 "C4'" C N S 140
DM9 "O4'" O N N 141
DM9 "C5'" C N S 142
DM9 "O5'" O N N 143
DM9 "C6'" C N N 144
DM9 "N3'" N N N 145
DM9 C31 C N N 146
DM9 O31 O N N 147
DM9 C41 C N N 148
DM9 C42 C N N 149
DM9 O42 O N N 150
DM9 C43 C N N 151
DM9 H1 H N N 152
DM9 H2 H N N 153
DM9 H3 H N N 154
DM9 HO5 H N N 155
DM9 HO6 H N N 156
DM9 H7 H N N 157
DM9 H81 H N N 158
DM9 H82 H N N 159
DM9 HO9 H N N 160
DM9 H101 H N N 161
DM9 H102 H N N 162
DM9 HO11 H N N 163
DM9 HO12 H N N 164
DM9 H141 H N N 165
DM9 H142 H N N 166
DM9 H143 H N N 167
DM9 H211 H N N 168
DM9 H212 H N N 169
DM9 H213 H N N 170
DM9 "H1'" H N N 171
DM9 "H2'1" H N N 172
DM9 "H2'2" H N N 173
DM9 "H3'" H N N 174
DM9 "H4'" H N N 175
DM9 "HO4'" H N N 176
DM9 "H5'" H N N 177
DM9 "H6'1" H N N 178
DM9 "H6'2" H N N 179
DM9 "H6'3" H N N 180
DM9 H311 H N N 181
DM9 H312 H N N 182
DM9 HO31 H N N 183
DM9 H411 H N N 184
DM9 H412 H N N 185
DM9 H421 H N N 186
DM9 H422 H N N 187
DM9 H431 H N N 188
DM9 H432 H N N 189
DM9 H433 H N N 190
DT OP3 O N N 191
DT P P N N 192
DT OP1 O N N 193
DT OP2 O N N 194
DT "O5'" O N N 195
DT "C5'" C N N 196
DT "C4'" C N R 197
DT "O4'" O N N 198
DT "C3'" C N S 199
DT "O3'" O N N 200
DT "C2'" C N N 201
DT "C1'" C N R 202
DT N1 N N N 203
DT C2 C N N 204
DT O2 O N N 205
DT N3 N N N 206
DT C4 C N N 207
DT O4 O N N 208
DT C5 C N N 209
DT C7 C N N 210
DT C6 C N N 211
DT HOP3 H N N 212
DT HOP2 H N N 213
DT "H5'" H N N 214
DT "H5''" H N N 215
DT "H4'" H N N 216
DT "H3'" H N N 217
DT "HO3'" H N N 218
DT "H2'" H N N 219
DT "H2''" H N N 220
DT "H1'" H N N 221
DT H3 H N N 222
DT H71 H N N 223
DT H72 H N N 224
DT H73 H N N 225
DT H6 H N N 226
HOH O O N N 227
HOH H1 H N N 228
HOH H2 H N N 229
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DM9 C1 C2 doub Y N 113
DM9 C1 C15 sing Y N 114
DM9 C1 H1 sing N N 115
DM9 C2 C3 sing Y N 116
DM9 C2 H2 sing N N 117
DM9 C3 C4 doub Y N 118
DM9 C3 H3 sing N N 119
DM9 C4 O4 sing N N 120
DM9 C4 C16 sing Y N 121
DM9 O4 C21 sing N N 122
DM9 C5 O5 sing N N 123
DM9 C5 C16 doub Y N 124
DM9 C5 C17 sing Y N 125
DM9 O5 HO5 sing N N 126
DM9 C6 O6 sing N N 127
DM9 C6 C17 doub Y N 128
DM9 C6 C20 sing Y N 129
DM9 O6 HO6 sing N N 130
DM9 C7 O7 sing N N 131
DM9 C7 C8 sing N N 132
DM9 C7 C20 sing N N 133
DM9 C7 H7 sing N N 134
DM9 O7 "C1'" sing N N 135
DM9 C8 C9 sing N N 136
DM9 C8 H81 sing N N 137
DM9 C8 H82 sing N N 138
DM9 C9 O9 sing N N 139
DM9 C9 C10 sing N N 140
DM9 C9 C13 sing N N 141
DM9 O9 HO9 sing N N 142
DM9 C10 C19 sing N N 143
DM9 C10 H101 sing N N 144
DM9 C10 H102 sing N N 145
DM9 C11 O11 sing N N 146
DM9 C11 C18 doub Y N 147
DM9 C11 C19 sing Y N 148
DM9 O11 HO11 sing N N 149
DM9 C12 O12 sing N N 150
DM9 C12 C15 doub Y N 151
DM9 C12 C18 sing Y N 152
DM9 O12 HO12 sing N N 153
DM9 C13 O13 doub N N 154
DM9 C13 C14 sing N N 155
DM9 C14 H141 sing N N 156
DM9 C14 H142 sing N N 157
DM9 C14 H143 sing N N 158
DM9 C15 C16 sing Y N 159
DM9 C17 C18 sing Y N 160
DM9 C19 C20 doub Y N 161
DM9 C21 H211 sing N N 162
DM9 C21 H212 sing N N 163
DM9 C21 H213 sing N N 164
DM9 "C1'" "C2'" sing N N 165
DM9 "C1'" "O5'" sing N N 166
DM9 "C1'" "H1'" sing N N 167
DM9 "C2'" "C3'" sing N N 168
DM9 "C2'" "H2'1" sing N N 169
DM9 "C2'" "H2'2" sing N N 170
DM9 "C3'" "C4'" sing N N 171
DM9 "C3'" "N3'" sing N N 172
DM9 "C3'" "H3'" sing N N 173
DM9 "C4'" "O4'" sing N N 174
DM9 "C4'" "C5'" sing N N 175
DM9 "C4'" "H4'" sing N N 176
DM9 "O4'" "HO4'" sing N N 177
DM9 "C5'" "O5'" sing N N 178
DM9 "C5'" "C6'" sing N N 179
DM9 "C5'" "H5'" sing N N 180
DM9 "C6'" "H6'1" sing N N 181
DM9 "C6'" "H6'2" sing N N 182
DM9 "C6'" "H6'3" sing N N 183
DM9 "N3'" C31 sing N N 184
DM9 "N3'" C41 sing N N 185
DM9 C31 O31 sing N N 186
DM9 C31 H311 sing N N 187
DM9 C31 H312 sing N N 188
DM9 O31 HO31 sing N N 189
DM9 C41 C42 sing N N 190
DM9 C41 H411 sing N N 191
DM9 C41 H412 sing N N 192
DM9 C42 O42 sing N N 193
DM9 C42 H421 sing N N 194
DM9 C42 H422 sing N N 195
DM9 O42 C43 sing N N 196
DM9 C43 H431 sing N N 197
DM9 C43 H432 sing N N 198
DM9 C43 H433 sing N N 199
DT OP3 P sing N N 200
DT OP3 HOP3 sing N N 201
DT P OP1 doub N N 202
DT P OP2 sing N N 203
DT P "O5'" sing N N 204
DT OP2 HOP2 sing N N 205
DT "O5'" "C5'" sing N N 206
DT "C5'" "C4'" sing N N 207
DT "C5'" "H5'" sing N N 208
DT "C5'" "H5''" sing N N 209
DT "C4'" "O4'" sing N N 210
DT "C4'" "C3'" sing N N 211
DT "C4'" "H4'" sing N N 212
DT "O4'" "C1'" sing N N 213
DT "C3'" "O3'" sing N N 214
DT "C3'" "C2'" sing N N 215
DT "C3'" "H3'" sing N N 216
DT "O3'" "HO3'" sing N N 217
DT "C2'" "C1'" sing N N 218
DT "C2'" "H2'" sing N N 219
DT "C2'" "H2''" sing N N 220
DT "C1'" N1 sing N N 221
DT "C1'" "H1'" sing N N 222
DT N1 C2 sing N N 223
DT N1 C6 sing N N 224
DT C2 O2 doub N N 225
DT C2 N3 sing N N 226
DT N3 C4 sing N N 227
DT N3 H3 sing N N 228
DT C4 O4 doub N N 229
DT C4 C5 sing N N 230
DT C5 C7 sing N N 231
DT C5 C6 doub N N 232
DT C7 H71 sing N N 233
DT C7 H72 sing N N 234
DT C7 H73 sing N N 235
DT C6 H6 sing N N 236
HOH O H1 sing N N 237
HOH O H2 sing N N 238
#
_ndb_struct_conf_na.entry_id 482D
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 8_665 0.121 -0.098 -0.041 8.628 -0.910 -1.450 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1
1 A DG 2 1_555 A DC 5 8_665 -0.340 -0.105 -0.281 -13.973 3.057 1.799 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1
1 A DA 3 1_555 A DT 4 8_665 -0.027 -0.031 -0.154 -11.686 -1.102 3.330 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1
1 A DT 4 1_555 A DA 3 8_665 0.027 -0.031 -0.154 11.686 -1.102 3.330 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1
1 A DC 5 1_555 A DG 2 8_665 0.340 -0.105 -0.281 13.973 3.057 1.799 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1
1 A DG 6 1_555 A DC 1 8_665 -0.121 -0.098 -0.041 -8.628 -0.910 -1.450 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.351 1.089 7.016 1.803 -2.106 33.526 2.620 -1.703 6.998 -3.642 -3.119
33.637 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ?
1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.107 0.480 3.397 -4.416 1.060 33.471 0.644 1.146 3.523 1.830 7.624
33.768 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ?
1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.451 2.917 0.000 6.038 29.686 -1.935 0.000 2.773 11.634 0.000
30.280 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ?
1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.107 0.480 3.397 4.416 1.060 33.471 0.644 -1.146 3.523 1.830 -7.624
33.768 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ?
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.351 1.089 7.016 -1.803 -2.106 33.526 2.620 1.703 6.998 -3.642 3.119
33.637 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ?
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name Other
_pdbx_initial_refinement_model.details 'SEE REFERENCE 2'
#
_atom_sites.entry_id 482D
_atom_sites.fract_transf_matrix[1][1] 0.035511
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035511
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.018726
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 9.361 20.166 23.136 1.00 19.10 ? 1 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 9.859 21.336 23.786 1.00 18.34 ? 1 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 11.302 21.134 24.178 1.00 18.38 ? 1 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 11.431 19.957 25.002 1.00 17.64 ? 1 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 12.232 20.921 22.976 1.00 18.96 ? 1 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 13.389 21.697 23.216 1.00 20.16 ? 1 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 12.630 19.459 23.051 1.00 17.65 ? 1 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 12.476 19.121 24.518 1.00 16.98 ? 1 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 12.049 17.738 24.687 1.00 15.41 ? 1 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 13.025 16.750 24.874 1.00 14.73 ? 1 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 14.228 17.099 24.970 1.00 14.93 ? 1 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 12.641 15.467 24.939 1.00 13.69 ? 1 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 11.361 15.141 24.818 1.00 13.14 ? 1 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 11.044 13.872 24.893 1.00 13.09 ? 1 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 10.351 16.111 24.613 1.00 13.48 ? 1 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 10.734 17.389 24.556 1.00 14.48 ? 1 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 13.817 22.808 22.165 1.00 21.33 ? 2 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.797 23.634 22.894 1.00 21.68 ? 2 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 12.621 23.414 21.561 1.00 21.30 ? 2 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.610 21.989 21.071 1.00 20.80 ? 2 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 15.855 21.387 21.380 1.00 19.83 ? 2 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 16.298 20.553 20.204 1.00 19.64 ? 2 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 15.479 19.374 20.102 1.00 18.33 ? 2 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 16.177 21.263 18.849 1.00 19.68 ? 2 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 17.285 20.779 18.114 1.00 22.21 ? 2 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 14.967 20.603 18.223 1.00 18.74 ? 2 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 15.138 19.197 18.746 1.00 17.66 ? 2 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 13.979 18.313 18.672 1.00 16.36 ? 2 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 12.657 18.673 18.603 1.00 15.68 ? 2 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 11.855 17.652 18.465 1.00 15.40 ? 2 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 12.699 16.550 18.424 1.00 14.92 ? 2 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 12.415 15.170 18.290 1.00 13.92 ? 2 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 11.333 14.630 18.131 1.00 14.38 ? 2 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 13.565 14.404 18.347 1.00 12.91 ? 2 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 14.834 14.896 18.483 1.00 12.64 ? 2 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 15.814 14.001 18.506 1.00 12.53 ? 2 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.123 16.171 18.585 1.00 13.53 ? 2 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 14.016 16.940 18.560 1.00 15.08 ? 2 DG A C4 1
ATOM 39 P P . DA A 1 3 ? 18.267 21.791 17.362 1.00 23.43 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? 18.913 22.651 18.363 1.00 23.63 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? 17.546 22.363 16.201 1.00 23.98 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? 19.384 20.813 16.791 1.00 22.94 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? 20.217 20.073 17.686 1.00 21.65 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? 20.476 18.698 17.124 1.00 20.54 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? 19.259 17.937 17.262 1.00 19.73 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? 20.820 18.703 15.633 1.00 20.54 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? 22.079 18.082 15.462 1.00 20.89 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? 19.794 17.795 14.988 1.00 20.12 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? 19.091 17.102 16.140 1.00 19.19 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? 17.666 17.019 15.870 1.00 17.23 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? 16.766 18.057 15.839 1.00 16.69 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? 15.547 17.681 15.570 1.00 15.74 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? 15.650 16.303 15.416 1.00 14.88 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? 14.703 15.319 15.132 1.00 13.82 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? 13.431 15.592 14.920 1.00 12.63 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? 15.127 14.035 15.071 1.00 13.35 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? 16.429 13.774 15.257 1.00 13.41 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? 17.429 14.625 15.514 1.00 14.43 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? 16.955 15.884 15.590 1.00 15.58 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? 22.796 18.128 14.032 1.00 21.44 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? 24.247 17.955 14.383 1.00 21.43 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? 22.335 19.294 13.282 1.00 21.41 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? 22.248 16.817 13.331 1.00 19.79 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? 22.665 15.527 13.802 1.00 18.14 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? 22.023 14.434 12.984 1.00 17.07 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? 20.601 14.525 13.088 1.00 16.56 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? 22.350 14.486 11.488 1.00 17.34 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? 22.887 13.208 11.140 1.00 18.54 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? 21.010 14.684 10.798 1.00 16.70 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? 20.014 14.222 11.839 1.00 16.36 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? 18.724 14.905 11.786 1.00 15.46 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? 17.623 14.097 11.808 1.00 15.15 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? 17.713 12.879 11.752 1.00 15.65 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? 16.428 14.755 11.896 1.00 14.50 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? 16.231 16.123 11.966 1.00 14.58 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? 15.098 16.582 12.023 1.00 14.46 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? 17.441 16.922 11.961 1.00 14.99 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? 17.323 18.411 12.052 1.00 15.13 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? 18.617 16.279 11.873 1.00 15.33 ? 4 DT A C6 1
ATOM 80 P P . DC A 1 5 ? 23.787 13.052 9.834 1.00 19.69 ? 5 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 24.716 11.944 10.069 1.00 19.54 ? 5 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 24.301 14.377 9.405 1.00 19.51 ? 5 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 22.735 12.617 8.732 1.00 18.81 ? 5 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 22.143 11.323 8.758 1.00 18.40 ? 5 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 20.973 11.297 7.806 1.00 18.01 ? 5 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 19.929 12.147 8.317 1.00 17.20 ? 5 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 21.312 11.845 6.416 1.00 18.16 ? 5 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 20.595 11.034 5.482 1.00 19.71 ? 5 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 20.671 13.221 6.413 1.00 17.25 ? 5 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 19.454 12.941 7.263 1.00 16.78 ? 5 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 18.743 14.087 7.839 1.00 16.21 ? 5 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 17.343 13.963 8.060 1.00 15.63 ? 5 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 16.814 12.853 7.981 1.00 15.00 ? 5 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 16.624 15.075 8.350 1.00 15.57 ? 5 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 17.230 16.269 8.403 1.00 15.30 ? 5 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 16.473 17.340 8.623 1.00 14.83 ? 5 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 18.641 16.416 8.206 1.00 15.47 ? 5 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 19.352 15.312 7.926 1.00 15.82 ? 5 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 21.377 9.955 4.603 1.00 20.68 ? 6 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 21.996 8.968 5.557 1.00 21.15 ? 6 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 22.209 10.723 3.660 1.00 20.35 ? 6 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 20.216 9.221 3.802 1.00 19.91 ? 6 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 19.275 8.380 4.486 1.00 18.42 ? 6 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 18.243 7.865 3.506 1.00 17.79 ? 6 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 17.383 8.952 3.089 1.00 17.45 ? 6 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 18.819 7.282 2.222 1.00 17.32 ? 6 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 17.967 6.199 1.824 1.00 17.30 ? 6 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 18.848 8.488 1.305 1.00 16.87 ? 6 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 17.579 9.227 1.702 1.00 16.46 ? 6 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 17.595 10.675 1.526 1.00 15.39 ? 6 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 18.687 11.500 1.569 1.00 15.00 ? 6 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 18.374 12.769 1.599 1.00 14.51 ? 6 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 16.989 12.785 1.566 1.00 14.52 ? 6 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 16.070 13.886 1.540 1.00 13.81 ? 6 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 16.328 15.096 1.563 1.00 14.14 ? 6 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 14.746 13.448 1.477 1.00 13.39 ? 6 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 14.352 12.133 1.453 1.00 13.16 ? 6 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 13.049 11.903 1.395 1.00 13.10 ? 6 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 15.193 11.106 1.485 1.00 13.99 ? 6 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 16.487 11.504 1.529 1.00 14.54 ? 6 DG A C4 1
HETATM 121 C C1 . DM9 B 2 . ? 15.566 18.348 5.136 1.00 13.91 ? 7 DM9 A C1 1
HETATM 122 C C2 . DM9 B 2 . ? 16.770 19.075 5.151 1.00 13.94 ? 7 DM9 A C2 1
HETATM 123 C C3 . DM9 B 2 . ? 18.020 18.424 5.050 1.00 14.58 ? 7 DM9 A C3 1
HETATM 124 C C4 . DM9 B 2 . ? 18.011 17.033 4.940 1.00 14.29 ? 7 DM9 A C4 1
HETATM 125 O O4 . DM9 B 2 . ? 19.235 16.401 4.836 1.00 15.08 ? 7 DM9 A O4 1
HETATM 126 C C5 . DM9 B 2 . ? 16.763 14.875 4.847 1.00 13.61 ? 7 DM9 A C5 1
HETATM 127 O O5 . DM9 B 2 . ? 17.916 14.159 4.753 1.00 14.45 ? 7 DM9 A O5 1
HETATM 128 C C6 . DM9 B 2 . ? 15.422 12.725 4.783 1.00 13.21 ? 7 DM9 A C6 1
HETATM 129 O O6 . DM9 B 2 . ? 16.593 11.963 4.706 1.00 13.31 ? 7 DM9 A O6 1
HETATM 130 C C7 . DM9 B 2 . ? 14.157 10.573 4.716 1.00 14.93 ? 7 DM9 A C7 1
HETATM 131 O O7 . DM9 B 2 . ? 14.761 10.203 6.077 1.00 16.66 ? 7 DM9 A O7 1
HETATM 132 C C8 . DM9 B 2 . ? 12.806 9.899 4.530 1.00 14.16 ? 7 DM9 A C8 1
HETATM 133 C C9 . DM9 B 2 . ? 11.695 10.716 5.294 1.00 14.40 ? 7 DM9 A C9 1
HETATM 134 O O9 . DM9 B 2 . ? 11.831 10.661 6.722 1.00 14.08 ? 7 DM9 A O9 1
HETATM 135 C C10 . DM9 B 2 . ? 11.623 12.217 4.872 1.00 14.22 ? 7 DM9 A C10 1
HETATM 136 C C11 . DM9 B 2 . ? 13.073 14.229 4.944 1.00 13.05 ? 7 DM9 A C11 1
HETATM 137 O O11 . DM9 B 2 . ? 11.864 14.870 5.026 1.00 14.26 ? 7 DM9 A O11 1
HETATM 138 C C12 . DM9 B 2 . ? 14.326 16.304 5.028 1.00 13.25 ? 7 DM9 A C12 1
HETATM 139 O O12 . DM9 B 2 . ? 13.199 16.976 5.103 1.00 13.91 ? 7 DM9 A O12 1
HETATM 140 C C13 . DM9 B 2 . ? 10.408 9.987 5.067 1.00 14.67 ? 7 DM9 A C13 1
HETATM 141 O O13 . DM9 B 2 . ? 9.668 10.374 4.059 1.00 15.34 ? 7 DM9 A O13 1
HETATM 142 C C14 . DM9 B 2 . ? 9.977 8.858 5.991 1.00 14.46 ? 7 DM9 A C14 1
HETATM 143 C C15 . DM9 B 2 . ? 15.593 16.965 5.031 1.00 13.59 ? 7 DM9 A C15 1
HETATM 144 C C16 . DM9 B 2 . ? 16.810 16.299 4.942 1.00 14.03 ? 7 DM9 A C16 1
HETATM 145 C C17 . DM9 B 2 . ? 15.499 14.146 4.857 1.00 13.41 ? 7 DM9 A C17 1
HETATM 146 C C18 . DM9 B 2 . ? 14.293 14.892 4.943 1.00 13.00 ? 7 DM9 A C18 1
HETATM 147 C C19 . DM9 B 2 . ? 13.003 12.826 4.867 1.00 13.82 ? 7 DM9 A C19 1
HETATM 148 C C20 . DM9 B 2 . ? 14.151 12.061 4.791 1.00 13.88 ? 7 DM9 A C20 1
HETATM 149 C C21 . DM9 B 2 . ? 20.516 17.202 4.836 1.00 15.61 ? 7 DM9 A C21 1
HETATM 150 C "C1'" . DM9 B 2 . ? 15.679 9.022 6.190 1.00 18.82 ? 7 DM9 A "C1'" 1
HETATM 151 C "C2'" . DM9 B 2 . ? 16.526 9.188 7.433 1.00 20.34 ? 7 DM9 A "C2'" 1
HETATM 152 C "C3'" . DM9 B 2 . ? 15.647 8.880 8.676 1.00 21.58 ? 7 DM9 A "C3'" 1
HETATM 153 C "C4'" . DM9 B 2 . ? 14.768 7.623 8.553 1.00 21.18 ? 7 DM9 A "C4'" 1
HETATM 154 O "O4'" . DM9 B 2 . ? 15.779 6.531 8.392 1.00 21.26 ? 7 DM9 A "O4'" 1
HETATM 155 C "C5'" . DM9 B 2 . ? 13.940 7.661 7.218 1.00 21.01 ? 7 DM9 A "C5'" 1
HETATM 156 O "O5'" . DM9 B 2 . ? 14.849 7.861 6.058 1.00 19.93 ? 7 DM9 A "O5'" 1
HETATM 157 C "C6'" . DM9 B 2 . ? 13.113 6.376 7.039 1.00 21.26 ? 7 DM9 A "C6'" 1
HETATM 158 N "N3'" . DM9 B 2 . ? 16.299 9.159 9.980 1.00 23.35 ? 7 DM9 A "N3'" 1
HETATM 159 C C31 . DM9 B 2 . ? 17.752 9.461 9.816 1.00 23.31 ? 7 DM9 A C31 1
HETATM 160 O O31 . DM9 B 2 . ? 18.017 10.926 10.096 1.00 23.02 ? 7 DM9 A O31 1
HETATM 161 C C41 . DM9 B 2 . ? 15.998 8.105 11.049 1.00 24.39 ? 7 DM9 A C41 1
HETATM 162 C C42 . DM9 B 2 . ? 16.857 8.315 12.307 1.00 25.52 ? 7 DM9 A C42 1
HETATM 163 O O42 . DM9 B 2 . ? 17.444 6.968 12.767 1.00 26.72 ? 7 DM9 A O42 1
HETATM 164 C C43 . DM9 B 2 . ? 17.449 5.736 11.900 1.00 26.34 ? 7 DM9 A C43 1
HETATM 165 O O . HOH C 3 . ? 19.962 14.552 2.852 1.00 24.04 ? 8 HOH A O 1
HETATM 166 O O . HOH C 3 . ? 22.846 15.826 7.855 1.00 23.91 ? 9 HOH A O 1
HETATM 167 O O . HOH C 3 . ? 22.371 13.357 3.071 1.00 32.95 ? 10 HOH A O 1
HETATM 168 O O . HOH C 3 . ? 13.770 8.469 1.511 1.00 27.02 ? 11 HOH A O 1
HETATM 169 O O . HOH C 3 . ? 16.101 18.976 24.841 1.00 26.83 ? 12 HOH A O 1
HETATM 170 O O . HOH C 3 . ? 17.451 19.964 8.564 1.00 28.18 ? 13 HOH A O 1
HETATM 171 O O . HOH C 3 . ? 14.614 6.913 3.358 1.00 42.64 ? 14 HOH A O 1
HETATM 172 O O . HOH C 3 . ? 11.422 9.608 0.706 1.00 32.35 ? 15 HOH A O 1
HETATM 173 O O . HOH C 3 . ? 17.897 16.910 1.115 1.00 27.80 ? 16 HOH A O 1
HETATM 174 O O . HOH C 3 . ? 19.392 21.214 13.046 1.00 33.30 ? 17 HOH A O 1
HETATM 175 O O . HOH C 3 . ? 20.954 18.377 10.877 1.00 39.24 ? 18 HOH A O 1
HETATM 176 O O . HOH C 3 . ? 24.618 17.040 17.510 1.00 36.53 ? 19 HOH A O 1
HETATM 177 O O . HOH C 3 . ? 11.759 21.989 19.435 1.00 32.44 ? 20 HOH A O 1
HETATM 178 O O . HOH C 3 . ? 13.159 19.082 15.057 1.00 36.25 ? 21 HOH A O 1
HETATM 179 O O . HOH C 3 . ? 11.210 6.951 2.747 1.00 54.65 ? 22 HOH A O 1
HETATM 180 O O . HOH C 3 . ? 21.905 18.699 8.406 1.00 49.27 ? 23 HOH A O 1
HETATM 181 O O . HOH C 3 . ? 15.289 5.347 0.172 1.00 38.71 ? 24 HOH A O 1
HETATM 182 O O . HOH C 3 . ? 9.197 23.611 20.660 1.00 37.10 ? 25 HOH A O 1
HETATM 183 O O . HOH C 3 . ? 21.261 24.578 17.081 1.00 40.12 ? 26 HOH A O 1
HETATM 184 O O . HOH C 3 . ? 25.330 17.097 10.687 1.00 41.89 ? 27 HOH A O 1
HETATM 185 O O . HOH C 3 . ? 15.415 21.574 10.889 1.00 42.21 ? 28 HOH A O 1
HETATM 186 O O . HOH C 3 . ? 20.210 9.122 10.964 1.00 42.23 ? 29 HOH A O 1
HETATM 187 O O . HOH C 3 . ? 25.359 9.618 8.169 1.00 42.87 ? 30 HOH A O 1
HETATM 188 O O . HOH C 3 . ? 20.740 20.167 6.590 1.00 50.72 ? 31 HOH A O 1
HETATM 189 O O . HOH C 3 . ? 18.074 22.209 10.579 1.00 41.83 ? 32 HOH A O 1
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