data_481D
#
_entry.id 481D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 481D pdb_0000481d 10.2210/pdb481d/pdb
NDB HD0001 ? ?
RCSB RCSB001246 ? ?
WWPDB D_1000001246 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2002-04-27
2 'Structure model' 1 1 2008-04-26
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2023-12-27
5 'Structure model' 1 4 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 5 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp_atom
2 4 'Structure model' chem_comp_bond
3 4 'Structure model' database_2
4 4 'Structure model' diffrn_source
5 4 'Structure model' struct_conn
6 5 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 481D
_pdbx_database_status.recvd_initial_deposition_date 1999-07-23
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Declercq, R.' 1
'Van Meervelt, L.' 2
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Crystal structure of double helical hexitol nucleic acids.' J.Am.Chem.Soc. 124 928 933 2002 JACSAT US
0002-7863 0004 ? 11829600 10.1021/ja016570w
1
;1',5'-Anhydrohexitol Nucleic Acids, a New Promising Antisense Construct
;
Angew.Chem.Int.Ed.Engl. 34 1338 1342 1995 ACIEAY GE 0570-0833 0179 ? ? 10.1002/anie.199513381
2
;1',5'-Anhydro-2',3'-Dideoxy-2'-(Guanin-9-Yl)-D-Arabino Hexitol
;
'Acta Crystallogr.,Sect.C' 52 1213 1214 1995 ACSCEE DK 0108-2701 0591 ? ? 10.1107/S0108270195015101
3
'Molecular Dynamics Simulation to Investigate Differences in Groove Hydration of HNA/RNA Hybrids as Compared to HNA/DNA Complexes'
J.Am.Chem.Soc. 120 5381 ? 1998 JACSAT US 0002-7863 0004 ? ? 10.1021/ja973721f
4
;Oligonucleotides with 1',5'-Anhydrohexitol Nucleoside Building Blocks: Crystallisation and Preliminary X-Ray Studies of h(GTGTACAC)
;
'Acta Crystallogr.,Sect.D' 55 279 ? 1999 ABCRE6 DK 0907-4449 0766 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Declercq, R.' 1 ?
primary 'Van Aerschot, A.' 2 ?
primary 'Read, R.J.' 3 ?
primary 'Herdewijn, P.' 4 ?
primary 'Van Meervelt, L.' 5 ?
1 'Van Aerschot, A.' 6 ?
1 'Verheggen, I.' 7 ?
1 'Hendrix, C.' 8 ?
1 'Herdewijn, P.' 9 ?
2 'Declercq, R.' 10 ?
2 'Herdewijn, P.' 11 ?
2 'Van Meervelt, L.' 12 ?
3 'De Winter, H.' 13 ?
3 'Lescrinier, E.' 14 ?
3 'Van Aerschot, A.' 15 ?
3 'Herdewijn, P' 16 ?
4 'Declercq, R.' 17 ?
4 'Van Aerschot, A.' 18 ?
4 'Herdewijn, P.' 19 ?
4 'Van Meervelt, L.' 20 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-H(*(6HG)P*(6HT)P*(6HG)P*(6HT)P*(6HA)P*(6HC)P*(6HA)P*(6HC))-3'" 2538.831 1 ? ? ?
'THE SUGAR MOIETIES ARE NOT DEOXYRIBOSE BUT D-ARABINO-HEXITOL'
2 water nat water 18.015 40 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(6HG)(6HT)(6HG)(6HT)(6HA)(6HC)(6HA)(6HC)'
_entity_poly.pdbx_seq_one_letter_code_can GTGTACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 6HG n
1 2 6HT n
1 3 6HG n
1 4 6HT n
1 5 6HA n
1 6 6HC n
1 7 6HA n
1 8 6HC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
6HA 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(ADENIN-9-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C11 H16 N5 O6 P' 345.248
6HC 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(CYTOSIN-1-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C10 H16 N3 O7 P' 321.224
6HG 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(GUANIN-9-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C11 H16 N5 O7 P' 361.248
6HT 'DNA linking' n "1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(THYMIN-1-YL)-6'-O-PHOSPHORYL-D-ARABINO-HEXITOL" ? 'C11 H17 N2 O8 P' 336.235
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 6HG 1 1 1 6HG 6HG A . n
A 1 2 6HT 2 2 2 6HT 6HT A . n
A 1 3 6HG 3 3 3 6HG 6HG A . n
A 1 4 6HT 4 4 4 6HT 6HT A . n
A 1 5 6HA 5 5 5 6HA 6HA A . n
A 1 6 6HC 6 6 6 6HC 6HC A . n
A 1 7 6HA 7 7 7 6HA 6HA A . n
A 1 8 6HC 8 8 8 6HC 6HC A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 9 9 HOH HOH A .
B 2 HOH 2 10 10 HOH HOH A .
B 2 HOH 3 11 11 HOH HOH A .
B 2 HOH 4 12 12 HOH HOH A .
B 2 HOH 5 13 13 HOH HOH A .
B 2 HOH 6 14 14 HOH HOH A .
B 2 HOH 7 15 15 HOH HOH A .
B 2 HOH 8 16 16 HOH HOH A .
B 2 HOH 9 17 17 HOH HOH A .
B 2 HOH 10 18 18 HOH HOH A .
B 2 HOH 11 19 19 HOH HOH A .
B 2 HOH 12 20 20 HOH HOH A .
B 2 HOH 13 21 21 HOH HOH A .
B 2 HOH 14 22 22 HOH HOH A .
B 2 HOH 15 23 23 HOH HOH A .
B 2 HOH 16 24 24 HOH HOH A .
B 2 HOH 17 25 25 HOH HOH A .
B 2 HOH 18 26 26 HOH HOH A .
B 2 HOH 19 27 27 HOH HOH A .
B 2 HOH 20 28 28 HOH HOH A .
B 2 HOH 21 29 29 HOH HOH A .
B 2 HOH 22 30 30 HOH HOH A .
B 2 HOH 23 31 31 HOH HOH A .
B 2 HOH 24 32 32 HOH HOH A .
B 2 HOH 25 33 33 HOH HOH A .
B 2 HOH 26 34 34 HOH HOH A .
B 2 HOH 27 35 35 HOH HOH A .
B 2 HOH 28 36 36 HOH HOH A .
B 2 HOH 29 37 37 HOH HOH A .
B 2 HOH 30 39 39 HOH HOH A .
B 2 HOH 31 40 40 HOH HOH A .
B 2 HOH 32 41 41 HOH HOH A .
B 2 HOH 33 42 42 HOH HOH A .
B 2 HOH 34 43 43 HOH HOH A .
B 2 HOH 35 44 44 HOH HOH A .
B 2 HOH 36 45 45 HOH HOH A .
B 2 HOH 37 46 46 HOH HOH A .
B 2 HOH 38 47 47 HOH HOH A .
B 2 HOH 39 48 48 HOH HOH A .
B 2 HOH 40 49 49 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
BRUTE 'model building' . ? 1
SHELXL-97 refinement . ? 2
DENZO 'data reduction' . ? 3
SCALEPACK 'data scaling' . ? 4
BRUTE phasing . ? 5
#
_cell.entry_id 481D
_cell.length_a 33.041
_cell.length_b 33.041
_cell.length_c 38.924
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 481D
_symmetry.space_group_name_H-M 'P 32 1 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting trigonal
_symmetry.Int_Tables_number 153
#
_exptl.entry_id 481D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 49.09
_exptl_crystal.density_Matthews 2.42
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
;CRYSTALS WERE OBTAINED FROM A SOLUTION THAT CONTAINED CACODYLATE BUFFER, KCL, BACL2, SPERMINE TETRACHLORIDE, AND MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP
;
_exptl_crystal_grow.pdbx_pH_range .
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 'CACODYLATE BUFFER' ? ? ?
1 2 1 KCL ? ? ?
1 3 1 BACL2 ? ? ?
1 4 1 SPERMINE ? ? ?
1 5 1 MPD ? ? ?
1 6 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 1998-10-22
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator MIRRORS
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.8375
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7B'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline BW7B
_diffrn_source.pdbx_wavelength 0.8375
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 481D
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 20
_reflns.d_resolution_high 1.6
_reflns.number_obs 3345
_reflns.number_all 3345
_reflns.percent_possible_obs 99.9
_reflns.pdbx_Rmerge_I_obs 0.0710000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 13.2
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 8.5
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.60
_reflns_shell.d_res_low 1.63
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.1730000
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 6.6
_reflns_shell.pdbx_redundancy 4.4
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 481D
_refine.ls_number_reflns_obs 3330
_refine.ls_number_reflns_all 3330
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 20.00
_refine.ls_d_res_high 1.60
_refine.ls_percent_reflns_obs 99.9
_refine.ls_R_factor_obs 0.1828000
_refine.ls_R_factor_all 0.1835000
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free 0.2287000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 9.8
_refine.ls_number_reflns_R_free 325
_refine.ls_number_parameters 843
_refine.ls_number_restraints 1426
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'BULK SOLVENT MODELING: MOEWS & KRETSINGER, J.MOL.BIOL. 91, 201-228 (1973)'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method 'FREE R'
_refine.details ?
_refine.pdbx_starting_model '2.21A P 62 2 2 STRUCTURE OF H(GTGTACAC) (NDB CODE HD0002) WAS USED AS MODEL'
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case
'ALL OTHER CHEMICALLY EQUIVALENT BOND DISTANCES AND ANGLES WERE RESTRAINED TO BE SIMILAR BY SAME DISTANCE RESTRAINTS'
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 481D
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen 0.
_refine_analyze.occupancy_sum_non_hydrogen 210.
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 169
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 40
_refine_hist.number_atoms_total 209
_refine_hist.d_res_high 1.60
_refine_hist.d_res_low 20.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist 0.046 ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.026 ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr 0.011 ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt 0.031 ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.entry_id 481D
_pdbx_refine.R_factor_all_no_cutoff 0.1840000
_pdbx_refine.R_factor_obs_no_cutoff 0.1830000
_pdbx_refine.free_R_factor_no_cutoff 0.2290000
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 9.8
_pdbx_refine.free_R_val_test_set_ct_no_cutoff 325
_pdbx_refine.R_factor_all_4sig_cutoff 0.1735000
_pdbx_refine.R_factor_obs_4sig_cutoff 0.1729000
_pdbx_refine.free_R_factor_4sig_cutoff 0.2136000
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 9.9
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 297
_pdbx_refine.number_reflns_obs_4sig_cutoff 3011
_pdbx_refine.number_reflns_obs_no_cutoff ?
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.free_R_error_no_cutoff ?
#
_database_PDB_matrix.entry_id 481D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.000000
_database_PDB_matrix.origx_vector[2] 0.000000
_database_PDB_matrix.origx_vector[3] 0.000000
#
_struct.entry_id 481D
_struct.title 'CRYSTAL STRUCTURE OF A HEXITOL NUCLEIC ACID (HNA) DUPLEX AT 1.6A RESOLUTION'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 481D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'HEXITOL NUCLEIC ACID, DNA ANALOGUE, DOUBLE HELIX, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 481D
_struct_ref.pdbx_db_accession 481D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 481D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 481D
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 6_555 x,x-y,-z 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A 6HG 1 "O3'" ? ? ? 1_555 A 6HT 2 P ? ? A 6HG 1 A 6HT 2 1_555 ? ? ? ? ? ? ? 1.588 ? ?
covale2 covale both ? A 6HT 2 "O3'" ? ? ? 1_555 A 6HG 3 P ? ? A 6HT 2 A 6HG 3 1_555 ? ? ? ? ? ? ? 1.601 ? ?
covale3 covale both ? A 6HG 3 "O3'" ? ? ? 1_555 A 6HT 4 P ? ? A 6HG 3 A 6HT 4 1_555 ? ? ? ? ? ? ? 1.581 ? ?
covale4 covale both ? A 6HT 4 "O3'" ? ? ? 1_555 A 6HA 5 P ? ? A 6HT 4 A 6HA 5 1_555 ? ? ? ? ? ? ? 1.592 ? ?
covale5 covale both ? A 6HA 5 "O3'" ? ? ? 1_555 A 6HC 6 P ? ? A 6HA 5 A 6HC 6 1_555 ? ? ? ? ? ? ? 1.592 ? ?
covale6 covale both ? A 6HC 6 "O3'" ? ? ? 1_555 A 6HA 7 P ? ? A 6HC 6 A 6HA 7 1_555 ? ? ? ? ? ? ? 1.587 ? ?
covale7 covale both ? A 6HA 7 "O3'" ? ? ? 1_555 A 6HC 8 P ? ? A 6HA 7 A 6HC 8 1_555 ? ? ? ? ? ? ? 1.598 ? ?
hydrog1 hydrog ? ? A 6HG 1 N1 ? ? ? 1_555 A 6HC 8 N3 ? ? A 6HG 1 A 6HC 8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A 6HG 1 N2 ? ? ? 1_555 A 6HC 8 O2 ? ? A 6HG 1 A 6HC 8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A 6HG 1 O6 ? ? ? 1_555 A 6HC 8 N4 ? ? A 6HG 1 A 6HC 8 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A 6HT 2 N3 ? ? ? 1_555 A 6HA 7 N1 ? ? A 6HT 2 A 6HA 7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A 6HT 2 O4 ? ? ? 1_555 A 6HA 7 N6 ? ? A 6HT 2 A 6HA 7 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A 6HG 3 N1 ? ? ? 1_555 A 6HC 6 N3 ? ? A 6HG 3 A 6HC 6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A 6HG 3 N2 ? ? ? 1_555 A 6HC 6 O2 ? ? A 6HG 3 A 6HC 6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A 6HG 3 O6 ? ? ? 1_555 A 6HC 6 N4 ? ? A 6HG 3 A 6HC 6 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A 6HT 4 N3 ? ? ? 1_555 A 6HA 5 N1 ? ? A 6HT 4 A 6HA 5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A 6HT 4 O4 ? ? ? 1_555 A 6HA 5 N6 ? ? A 6HT 4 A 6HA 5 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A 6HA 5 N1 ? ? ? 1_555 A 6HT 4 N3 ? ? A 6HA 5 A 6HT 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A 6HA 5 N6 ? ? ? 1_555 A 6HT 4 O4 ? ? A 6HA 5 A 6HT 4 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A 6HC 6 N3 ? ? ? 1_555 A 6HG 3 N1 ? ? A 6HC 6 A 6HG 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A 6HC 6 N4 ? ? ? 1_555 A 6HG 3 O6 ? ? A 6HC 6 A 6HG 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A 6HC 6 O2 ? ? ? 1_555 A 6HG 3 N2 ? ? A 6HC 6 A 6HG 3 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A 6HA 7 N1 ? ? ? 1_555 A 6HT 2 N3 ? ? A 6HA 7 A 6HT 2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A 6HA 7 N6 ? ? ? 1_555 A 6HT 2 O4 ? ? A 6HA 7 A 6HT 2 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A 6HC 8 N3 ? ? ? 1_555 A 6HG 1 N1 ? ? A 6HC 8 A 6HG 1 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A 6HC 8 N4 ? ? ? 1_555 A 6HG 1 O6 ? ? A 6HC 8 A 6HG 1 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A 6HC 8 O2 ? ? ? 1_555 A 6HG 1 N2 ? ? A 6HC 8 A 6HG 1 6_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 6HC
_pdbx_validate_rmsd_angle.auth_seq_id_1 6
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 P
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 6HA
_pdbx_validate_rmsd_angle.auth_seq_id_2 7
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 OP2
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 6HA
_pdbx_validate_rmsd_angle.auth_seq_id_3 7
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 117.70
_pdbx_validate_rmsd_angle.angle_target_value 110.50
_pdbx_validate_rmsd_angle.angle_deviation 7.20
_pdbx_validate_rmsd_angle.angle_standard_deviation 1.10
_pdbx_validate_rmsd_angle.linker_flag Y
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A 6HG 1 A 6HG 1 ? DG ?
2 A 6HT 2 A 6HT 2 ? DT ?
3 A 6HG 3 A 6HG 3 ? DG ?
4 A 6HT 4 A 6HT 4 ? DT ?
5 A 6HA 5 A 6HA 5 ? DA ?
6 A 6HC 6 A 6HC 6 ? DC ?
7 A 6HA 7 A 6HA 7 ? DA ?
8 A 6HC 8 A 6HC 8 ? DC ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
6HA P P N N 1
6HA OP1 O N N 2
6HA OP2 O N N 3
6HA OP3 O N N 4
6HA "O5'" O N N 5
6HA "C5'" C N N 6
6HA "C4'" C N R 7
6HA "O4'" O N N 8
6HA "C3'" C N S 9
6HA "O3'" O N N 10
6HA "C2'" C N N 11
6HA "C1'" C N S 12
6HA "C6'" C N N 13
6HA N9 N Y N 14
6HA C8 C Y N 15
6HA N7 N Y N 16
6HA C5 C Y N 17
6HA C6 C Y N 18
6HA N6 N N N 19
6HA N1 N Y N 20
6HA C2 C Y N 21
6HA N3 N Y N 22
6HA C4 C Y N 23
6HA HOP2 H N N 24
6HA HOP3 H N N 25
6HA "H5'" H N N 26
6HA "H5''" H N N 27
6HA "H4'" H N N 28
6HA "H3'" H N N 29
6HA "HO3'" H N N 30
6HA "H2'" H N N 31
6HA "H2''" H N N 32
6HA "H1'" H N N 33
6HA "H6'1" H N N 34
6HA "H6'2" H N N 35
6HA H8 H N N 36
6HA H61 H N N 37
6HA H62 H N N 38
6HA H2 H N N 39
6HC P P N N 40
6HC OP1 O N N 41
6HC OP2 O N N 42
6HC OP3 O N N 43
6HC "O5'" O N N 44
6HC "C5'" C N N 45
6HC "C4'" C N R 46
6HC "O4'" O N N 47
6HC "C3'" C N S 48
6HC "O3'" O N N 49
6HC "C2'" C N N 50
6HC "C1'" C N S 51
6HC "C6'" C N N 52
6HC N1 N N N 53
6HC C2 C N N 54
6HC O2 O N N 55
6HC N3 N N N 56
6HC C4 C N N 57
6HC N4 N N N 58
6HC C5 C N N 59
6HC C6 C N N 60
6HC HOP2 H N N 61
6HC HOP3 H N N 62
6HC "H5'" H N N 63
6HC "H5''" H N N 64
6HC "H4'" H N N 65
6HC "H3'" H N N 66
6HC "HO3'" H N N 67
6HC "H2'" H N N 68
6HC "H2''" H N N 69
6HC "H1'" H N N 70
6HC "H6'1" H N N 71
6HC "H6'2" H N N 72
6HC H41 H N N 73
6HC H42 H N N 74
6HC H5 H N N 75
6HC H6 H N N 76
6HG P P N N 77
6HG OP1 O N N 78
6HG OP2 O N N 79
6HG OP3 O N N 80
6HG "O5'" O N N 81
6HG "C5'" C N N 82
6HG "C4'" C N R 83
6HG "O4'" O N N 84
6HG "C3'" C N S 85
6HG "O3'" O N N 86
6HG "C2'" C N N 87
6HG "C1'" C N S 88
6HG "C6'" C N N 89
6HG N9 N Y N 90
6HG C8 C Y N 91
6HG N7 N Y N 92
6HG C5 C Y N 93
6HG C6 C N N 94
6HG O6 O N N 95
6HG N1 N N N 96
6HG C2 C N N 97
6HG N2 N N N 98
6HG N3 N N N 99
6HG C4 C Y N 100
6HG HOP2 H N N 101
6HG HOP3 H N N 102
6HG "H5'" H N N 103
6HG "H5''" H N N 104
6HG "H4'" H N N 105
6HG "H3'" H N N 106
6HG "HO3'" H N N 107
6HG "H2'" H N N 108
6HG "H2''" H N N 109
6HG "H1'" H N N 110
6HG "H6'1" H N N 111
6HG "H6'2" H N N 112
6HG H8 H N N 113
6HG H1 H N N 114
6HG H21 H N N 115
6HG H22 H N N 116
6HT P P N N 117
6HT OP1 O N N 118
6HT OP2 O N N 119
6HT OP3 O N N 120
6HT "O5'" O N N 121
6HT "C5'" C N N 122
6HT "C4'" C N R 123
6HT "O4'" O N N 124
6HT "C3'" C N S 125
6HT "O3'" O N N 126
6HT "C2'" C N N 127
6HT "C1'" C N S 128
6HT "C6'" C N N 129
6HT N1 N N N 130
6HT C2 C N N 131
6HT O2 O N N 132
6HT N3 N N N 133
6HT C4 C N N 134
6HT O4 O N N 135
6HT C5 C N N 136
6HT C5M C N N 137
6HT C6 C N N 138
6HT HOP2 H N N 139
6HT HOP3 H N N 140
6HT "H5'" H N N 141
6HT "H5''" H N N 142
6HT "H4'" H N N 143
6HT "H3'" H N N 144
6HT "HO3'" H N N 145
6HT "H2'" H N N 146
6HT "H2''" H N N 147
6HT "H1'" H N N 148
6HT "H6'1" H N N 149
6HT "H6'2" H N N 150
6HT H3 H N N 151
6HT H71 H N N 152
6HT H72 H N N 153
6HT H73 H N N 154
6HT H6 H N N 155
HOH O O N N 156
HOH H1 H N N 157
HOH H2 H N N 158
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6HA P OP1 doub N N 1
6HA P OP2 sing N N 2
6HA P OP3 sing N N 3
6HA P "O5'" sing N N 4
6HA OP2 HOP2 sing N N 5
6HA OP3 HOP3 sing N N 6
6HA "O5'" "C5'" sing N N 7
6HA "C5'" "C4'" sing N N 8
6HA "C5'" "H5'" sing N N 9
6HA "C5'" "H5''" sing N N 10
6HA "C4'" "O4'" sing N N 11
6HA "C4'" "C3'" sing N N 12
6HA "C4'" "H4'" sing N N 13
6HA "O4'" "C6'" sing N N 14
6HA "C3'" "O3'" sing N N 15
6HA "C3'" "C2'" sing N N 16
6HA "C3'" "H3'" sing N N 17
6HA "O3'" "HO3'" sing N N 18
6HA "C2'" "C1'" sing N N 19
6HA "C2'" "H2'" sing N N 20
6HA "C2'" "H2''" sing N N 21
6HA "C1'" "C6'" sing N N 22
6HA "C1'" N9 sing N N 23
6HA "C1'" "H1'" sing N N 24
6HA "C6'" "H6'1" sing N N 25
6HA "C6'" "H6'2" sing N N 26
6HA N9 C8 sing Y N 27
6HA N9 C4 sing Y N 28
6HA C8 N7 doub Y N 29
6HA C8 H8 sing N N 30
6HA N7 C5 sing Y N 31
6HA C5 C6 sing Y N 32
6HA C5 C4 doub Y N 33
6HA C6 N6 sing N N 34
6HA C6 N1 doub Y N 35
6HA N6 H61 sing N N 36
6HA N6 H62 sing N N 37
6HA N1 C2 sing Y N 38
6HA C2 N3 doub Y N 39
6HA C2 H2 sing N N 40
6HA N3 C4 sing Y N 41
6HC P OP1 doub N N 42
6HC P OP2 sing N N 43
6HC P OP3 sing N N 44
6HC P "O5'" sing N N 45
6HC OP2 HOP2 sing N N 46
6HC OP3 HOP3 sing N N 47
6HC "O5'" "C5'" sing N N 48
6HC "C5'" "C4'" sing N N 49
6HC "C5'" "H5'" sing N N 50
6HC "C5'" "H5''" sing N N 51
6HC "C4'" "O4'" sing N N 52
6HC "C4'" "C3'" sing N N 53
6HC "C4'" "H4'" sing N N 54
6HC "O4'" "C6'" sing N N 55
6HC "C3'" "O3'" sing N N 56
6HC "C3'" "C2'" sing N N 57
6HC "C3'" "H3'" sing N N 58
6HC "O3'" "HO3'" sing N N 59
6HC "C2'" "C1'" sing N N 60
6HC "C2'" "H2'" sing N N 61
6HC "C2'" "H2''" sing N N 62
6HC "C1'" "C6'" sing N N 63
6HC "C1'" N1 sing N N 64
6HC "C1'" "H1'" sing N N 65
6HC "C6'" "H6'1" sing N N 66
6HC "C6'" "H6'2" sing N N 67
6HC N1 C2 sing N N 68
6HC N1 C6 sing N N 69
6HC C2 O2 doub N N 70
6HC C2 N3 sing N N 71
6HC N3 C4 doub N N 72
6HC C4 N4 sing N N 73
6HC C4 C5 sing N N 74
6HC N4 H41 sing N N 75
6HC N4 H42 sing N N 76
6HC C5 C6 doub N N 77
6HC C5 H5 sing N N 78
6HC C6 H6 sing N N 79
6HG P OP1 doub N N 80
6HG P OP2 sing N N 81
6HG P OP3 sing N N 82
6HG P "O5'" sing N N 83
6HG OP2 HOP2 sing N N 84
6HG OP3 HOP3 sing N N 85
6HG "O5'" "C5'" sing N N 86
6HG "C5'" "C4'" sing N N 87
6HG "C5'" "H5'" sing N N 88
6HG "C5'" "H5''" sing N N 89
6HG "C4'" "O4'" sing N N 90
6HG "C4'" "C3'" sing N N 91
6HG "C4'" "H4'" sing N N 92
6HG "O4'" "C6'" sing N N 93
6HG "C3'" "O3'" sing N N 94
6HG "C3'" "C2'" sing N N 95
6HG "C3'" "H3'" sing N N 96
6HG "O3'" "HO3'" sing N N 97
6HG "C2'" "C1'" sing N N 98
6HG "C2'" "H2'" sing N N 99
6HG "C2'" "H2''" sing N N 100
6HG "C1'" "C6'" sing N N 101
6HG "C1'" N9 sing N N 102
6HG "C1'" "H1'" sing N N 103
6HG "C6'" "H6'1" sing N N 104
6HG "C6'" "H6'2" sing N N 105
6HG N9 C8 sing Y N 106
6HG N9 C4 sing Y N 107
6HG C8 N7 doub Y N 108
6HG C8 H8 sing N N 109
6HG N7 C5 sing Y N 110
6HG C5 C6 sing N N 111
6HG C5 C4 doub Y N 112
6HG C6 O6 doub N N 113
6HG C6 N1 sing N N 114
6HG N1 C2 sing N N 115
6HG N1 H1 sing N N 116
6HG C2 N2 sing N N 117
6HG C2 N3 doub N N 118
6HG N2 H21 sing N N 119
6HG N2 H22 sing N N 120
6HG N3 C4 sing N N 121
6HT P OP1 doub N N 122
6HT P OP2 sing N N 123
6HT P OP3 sing N N 124
6HT P "O5'" sing N N 125
6HT OP2 HOP2 sing N N 126
6HT OP3 HOP3 sing N N 127
6HT "O5'" "C5'" sing N N 128
6HT "C5'" "C4'" sing N N 129
6HT "C5'" "H5'" sing N N 130
6HT "C5'" "H5''" sing N N 131
6HT "C4'" "O4'" sing N N 132
6HT "C4'" "C3'" sing N N 133
6HT "C4'" "H4'" sing N N 134
6HT "O4'" "C6'" sing N N 135
6HT "C3'" "O3'" sing N N 136
6HT "C3'" "C2'" sing N N 137
6HT "C3'" "H3'" sing N N 138
6HT "O3'" "HO3'" sing N N 139
6HT "C2'" "C1'" sing N N 140
6HT "C2'" "H2'" sing N N 141
6HT "C2'" "H2''" sing N N 142
6HT "C1'" "C6'" sing N N 143
6HT "C1'" N1 sing N N 144
6HT "C1'" "H1'" sing N N 145
6HT "C6'" "H6'1" sing N N 146
6HT "C6'" "H6'2" sing N N 147
6HT N1 C2 sing N N 148
6HT N1 C6 sing N N 149
6HT C2 O2 doub N N 150
6HT C2 N3 sing N N 151
6HT N3 C4 sing N N 152
6HT N3 H3 sing N N 153
6HT C4 O4 doub N N 154
6HT C4 C5 sing N N 155
6HT C5 C5M sing N N 156
6HT C5 C6 doub N N 157
6HT C5M H71 sing N N 158
6HT C5M H72 sing N N 159
6HT C5M H73 sing N N 160
6HT C6 H6 sing N N 161
HOH O H1 sing N N 162
HOH O H2 sing N N 163
#
_ndb_struct_conf_na.entry_id 481D
_ndb_struct_conf_na.feature 'double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A 6HG 1 1_555 A 6HC 8 6_555 -0.254 -0.212 -0.393 -12.443 16.520 -0.282 1 A_6HG1:6HC8_A A 1 ? A 8 ? 19 1
1 A 6HT 2 1_555 A 6HA 7 6_555 0.035 -0.099 -0.015 -0.558 7.128 0.900 2 A_6HT2:6HA7_A A 2 ? A 7 ? 20 1
1 A 6HG 3 1_555 A 6HC 6 6_555 -0.241 -0.175 0.100 3.903 1.571 -1.700 3 A_6HG3:6HC6_A A 3 ? A 6 ? 19 1
1 A 6HT 4 1_555 A 6HA 5 6_555 -0.023 -0.123 -0.113 2.447 -0.785 0.885 4 A_6HT4:6HA5_A A 4 ? A 5 ? 20 1
1 A 6HA 5 1_555 A 6HT 4 6_555 0.023 -0.123 -0.113 -2.447 -0.785 0.885 5 A_6HA5:6HT4_A A 5 ? A 4 ? 20 1
1 A 6HC 6 1_555 A 6HG 3 6_555 0.241 -0.175 0.100 -3.903 1.571 -1.700 6 A_6HC6:6HG3_A A 6 ? A 3 ? 19 1
1 A 6HA 7 1_555 A 6HT 2 6_555 -0.035 -0.099 -0.015 0.558 7.128 0.900 7 A_6HA7:6HT2_A A 7 ? A 2 ? 20 1
1 A 6HC 8 1_555 A 6HG 1 6_555 0.254 -0.212 -0.393 12.443 16.520 -0.282 8 A_6HC8:6HG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A 6HG 1 1_555 A 6HC 8 6_555 A 6HT 2 1_555 A 6HA 7 6_555 -0.237 -2.851 3.272 -0.390 4.004 25.617 -7.388 0.428 2.804 8.959
0.873 25.925 1 AA_6HG16HT2:6HA76HC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A 6HT 2 1_555 A 6HA 7 6_555 A 6HG 3 1_555 A 6HC 6 6_555 -0.020 -2.018 3.214 -1.357 1.457 27.269 -4.619 -0.284 3.102 3.085
2.873 27.340 2 AA_6HT26HG3:6HC66HA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A 6HG 3 1_555 A 6HC 6 6_555 A 6HT 4 1_555 A 6HA 5 6_555 0.560 -2.899 3.294 2.304 4.103 29.900 -6.346 -0.628 2.914 7.890
-4.432 30.260 3 AA_6HG36HT4:6HA56HC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A 6HT 4 1_555 A 6HA 5 6_555 A 6HA 5 1_555 A 6HT 4 6_555 0.000 -4.203 3.442 0.000 6.800 15.714 -17.544 0.000 1.503 23.489
0.000 17.114 4 AA_6HT46HA5:6HT46HA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A 6HA 5 1_555 A 6HT 4 6_555 A 6HC 6 1_555 A 6HG 3 6_555 -0.560 -2.899 3.294 -2.305 4.103 29.900 -6.346 0.628 2.914 7.890
4.432 30.260 5 AA_6HA56HC6:6HG36HT4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A 6HC 6 1_555 A 6HG 3 6_555 A 6HA 7 1_555 A 6HT 2 6_555 0.020 -2.018 3.214 1.357 1.457 27.269 -4.619 0.284 3.102 3.085
-2.873 27.340 6 AA_6HC66HA7:6HT26HG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A 6HA 7 1_555 A 6HT 2 6_555 A 6HC 8 1_555 A 6HG 1 6_555 0.237 -2.851 3.272 0.390 4.004 25.617 -7.388 -0.428 2.804 8.959
-0.873 25.925 7 AA_6HA76HC8:6HG16HT2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_pdbx_initial_refinement_model.accession_code 1D7Z
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details '2.21A P 62 2 2 STRUCTURE OF H(GTGTACAC) (NDB CODE HD0002) WAS USED AS MODEL'
#
_atom_sites.entry_id 481D
_atom_sites.fract_transf_matrix[1][1] 0.030265
_atom_sites.fract_transf_matrix[1][2] 0.017474
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.034948
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025691
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O "O5'" . 6HG A 1 1 ? -7.726 3.509 9.283 1.00 14.38 ? 1 6HG A "O5'" 1
HETATM 2 C "C5'" . 6HG A 1 1 ? -6.641 4.198 8.555 1.00 8.33 ? 1 6HG A "C5'" 1
HETATM 3 C "C4'" . 6HG A 1 1 ? -6.230 5.435 9.371 1.00 10.01 ? 1 6HG A "C4'" 1
HETATM 4 O "O4'" . 6HG A 1 1 ? -5.751 4.846 10.595 1.00 9.51 ? 1 6HG A "O4'" 1
HETATM 5 C "C3'" . 6HG A 1 1 ? -5.056 6.166 8.698 1.00 13.63 ? 1 6HG A "C3'" 1
HETATM 6 O "O3'" . 6HG A 1 1 ? -5.686 6.779 7.511 1.00 11.28 ? 1 6HG A "O3'" 1
HETATM 7 C "C2'" . 6HG A 1 1 ? -4.750 7.423 9.626 1.00 8.60 ? 1 6HG A "C2'" 1
HETATM 8 C "C1'" . 6HG A 1 1 ? -4.382 6.813 11.128 1.00 8.99 ? 1 6HG A "C1'" 1
HETATM 9 C "C6'" . 6HG A 1 1 ? -5.644 5.898 11.528 1.00 10.78 ? 1 6HG A "C6'" 1
HETATM 10 N N9 . 6HG A 1 1 ? -3.069 6.164 11.138 1.00 10.36 ? 1 6HG A N9 1
HETATM 11 C C8 . 6HG A 1 1 ? -2.725 4.824 11.081 1.00 10.46 ? 1 6HG A C8 1
HETATM 12 N N7 . 6HG A 1 1 ? -1.455 4.606 11.114 1.00 14.67 ? 1 6HG A N7 1
HETATM 13 C C5 . 6HG A 1 1 ? -0.886 5.866 11.204 1.00 11.78 ? 1 6HG A C5 1
HETATM 14 C C6 . 6HG A 1 1 ? 0.459 6.258 11.273 1.00 11.33 ? 1 6HG A C6 1
HETATM 15 O O6 . 6HG A 1 1 ? 1.509 5.588 11.272 1.00 14.53 ? 1 6HG A O6 1
HETATM 16 N N1 . 6HG A 1 1 ? 0.579 7.626 11.352 1.00 10.05 ? 1 6HG A N1 1
HETATM 17 C C2 . 6HG A 1 1 ? -0.448 8.526 11.365 1.00 11.77 ? 1 6HG A C2 1
HETATM 18 N N2 . 6HG A 1 1 ? -0.115 9.841 11.449 1.00 10.80 ? 1 6HG A N2 1
HETATM 19 N N3 . 6HG A 1 1 ? -1.727 8.164 11.299 1.00 10.85 ? 1 6HG A N3 1
HETATM 20 C C4 . 6HG A 1 1 ? -1.876 6.833 11.221 1.00 8.09 ? 1 6HG A C4 1
HETATM 21 P P . 6HT A 1 2 ? -4.870 6.848 6.151 1.00 11.30 ? 2 6HT A P 1
HETATM 22 O OP1 . 6HT A 1 2 ? -5.883 7.072 5.087 1.00 13.17 ? 2 6HT A OP1 1
HETATM 23 O OP2 . 6HT A 1 2 ? -3.882 5.786 6.018 1.00 11.86 ? 2 6HT A OP2 1
HETATM 24 O "O5'" . 6HT A 1 2 ? -4.125 8.212 6.241 1.00 12.02 ? 2 6HT A "O5'" 1
HETATM 25 C "C5'" . 6HT A 1 2 ? -4.764 9.494 6.511 1.00 7.97 ? 2 6HT A "C5'" 1
HETATM 26 C "C4'" . 6HT A 1 2 ? -3.771 10.530 7.019 1.00 9.32 ? 2 6HT A "C4'" 1
HETATM 27 O "O4'" . 6HT A 1 2 ? -3.355 9.933 8.267 1.00 9.73 ? 2 6HT A "O4'" 1
HETATM 28 C "C3'" . 6HT A 1 2 ? -2.562 10.589 6.042 1.00 11.34 ? 2 6HT A "C3'" 1
HETATM 29 O "O3'" . 6HT A 1 2 ? -3.088 11.354 4.892 1.00 12.02 ? 2 6HT A "O3'" 1
HETATM 30 C "C2'" . 6HT A 1 2 ? -1.507 11.608 6.668 1.00 8.60 ? 2 6HT A "C2'" 1
HETATM 31 C "C1'" . 6HT A 1 2 ? -1.143 10.995 8.164 1.00 8.84 ? 2 6HT A "C1'" 1
HETATM 32 C "C6'" . 6HT A 1 2 ? -2.534 10.841 8.944 1.00 9.66 ? 2 6HT A "C6'" 1
HETATM 33 N N1 . 6HT A 1 2 ? -0.202 9.884 8.110 1.00 9.91 ? 2 6HT A N1 1
HETATM 34 C C2 . 6HT A 1 2 ? 1.155 10.186 8.229 1.00 8.29 ? 2 6HT A C2 1
HETATM 35 O O2 . 6HT A 1 2 ? 1.506 11.322 8.344 1.00 11.42 ? 2 6HT A O2 1
HETATM 36 N N3 . 6HT A 1 2 ? 1.946 9.068 8.160 1.00 13.57 ? 2 6HT A N3 1
HETATM 37 C C4 . 6HT A 1 2 ? 1.562 7.756 8.031 1.00 13.73 ? 2 6HT A C4 1
HETATM 38 O O4 . 6HT A 1 2 ? 2.380 6.823 7.967 1.00 14.51 ? 2 6HT A O4 1
HETATM 39 C C5 . 6HT A 1 2 ? 0.158 7.547 7.869 1.00 10.80 ? 2 6HT A C5 1
HETATM 40 C C5M . 6HT A 1 2 ? -0.414 6.144 7.704 1.00 21.68 ? 2 6HT A C5M 1
HETATM 41 C C6 . 6HT A 1 2 ? -0.661 8.606 7.941 1.00 10.98 ? 2 6HT A C6 1
HETATM 42 P P . 6HG A 1 3 ? -2.389 11.208 3.459 1.00 13.71 ? 3 6HG A P 1
HETATM 43 O OP1 . 6HG A 1 3 ? -3.309 11.903 2.525 1.00 16.27 ? 3 6HG A OP1 1
HETATM 44 O OP2 . 6HG A 1 3 ? -1.846 9.883 3.200 1.00 15.45 ? 3 6HG A OP2 1
HETATM 45 O "O5'" . 6HG A 1 3 ? -1.091 12.081 3.522 1.00 13.39 ? 3 6HG A "O5'" 1
HETATM 46 C "C5'" . 6HG A 1 3 ? -1.142 13.533 3.526 1.00 15.70 ? 3 6HG A "C5'" 1
HETATM 47 C "C4'" . 6HG A 1 3 ? 0.157 14.184 4.000 1.00 10.23 ? 3 6HG A "C4'" 1
HETATM 48 O "O4'" . 6HG A 1 3 ? 0.241 13.631 5.332 1.00 12.18 ? 3 6HG A "O4'" 1
HETATM 49 C "C3'" . 6HG A 1 3 ? 1.342 13.645 3.166 1.00 10.25 ? 3 6HG A "C3'" 1
HETATM 50 O "O3'" . 6HG A 1 3 ? 1.278 14.417 1.917 1.00 11.73 ? 3 6HG A "O3'" 1
HETATM 51 C "C2'" . 6HG A 1 3 ? 2.662 14.174 3.848 1.00 12.61 ? 3 6HG A "C2'" 1
HETATM 52 C "C1'" . 6HG A 1 3 ? 2.674 13.579 5.423 1.00 13.70 ? 3 6HG A "C1'" 1
HETATM 53 C "C6'" . 6HG A 1 3 ? 1.313 14.135 6.050 1.00 13.23 ? 3 6HG A "C6'" 1
HETATM 54 N N9 . 6HG A 1 3 ? 2.856 12.111 5.265 1.00 11.71 ? 3 6HG A N9 1
HETATM 55 C C8 . 6HG A 1 3 ? 1.994 11.061 5.080 1.00 11.16 ? 3 6HG A C8 1
HETATM 56 N N7 . 6HG A 1 3 ? 2.596 9.912 4.987 1.00 10.36 ? 3 6HG A N7 1
HETATM 57 C C5 . 6HG A 1 3 ? 3.968 10.240 5.125 1.00 8.05 ? 3 6HG A C5 1
HETATM 58 C C6 . 6HG A 1 3 ? 5.127 9.415 5.105 1.00 9.43 ? 3 6HG A C6 1
HETATM 59 O O6 . 6HG A 1 3 ? 5.209 8.187 4.966 1.00 13.10 ? 3 6HG A O6 1
HETATM 60 N N1 . 6HG A 1 3 ? 6.315 10.131 5.275 1.00 10.09 ? 3 6HG A N1 1
HETATM 61 C C2 . 6HG A 1 3 ? 6.375 11.496 5.440 1.00 11.13 ? 3 6HG A C2 1
HETATM 62 N N2 . 6HG A 1 3 ? 7.575 12.080 5.595 1.00 10.09 ? 3 6HG A N2 1
HETATM 63 N N3 . 6HG A 1 3 ? 5.286 12.278 5.459 1.00 12.12 ? 3 6HG A N3 1
HETATM 64 C C4 . 6HG A 1 3 ? 4.137 11.577 5.294 1.00 7.85 ? 3 6HG A C4 1
HETATM 65 P P . 6HT A 1 4 ? 1.635 13.738 0.535 1.00 13.72 ? 4 6HT A P 1
HETATM 66 O OP1 . 6HT A 1 4 ? 1.181 14.711 -0.470 1.00 16.82 ? 4 6HT A OP1 1
HETATM 67 O OP2 . 6HT A 1 4 ? 1.400 12.293 0.504 1.00 14.71 ? 4 6HT A OP2 1
HETATM 68 O "O5'" . 6HT A 1 4 ? 3.206 13.841 0.537 1.00 13.74 ? 4 6HT A "O5'" 1
HETATM 69 C "C5'" . 6HT A 1 4 ? 3.905 15.097 0.528 1.00 10.88 ? 4 6HT A "C5'" 1
HETATM 70 C "C4'" . 6HT A 1 4 ? 5.380 14.925 0.917 1.00 10.97 ? 4 6HT A "C4'" 1
HETATM 71 O "O4'" . 6HT A 1 4 ? 5.204 14.297 2.202 1.00 10.53 ? 4 6HT A "O4'" 1
HETATM 72 C "C3'" . 6HT A 1 4 ? 6.030 13.912 -0.048 1.00 12.35 ? 4 6HT A "C3'" 1
HETATM 73 O "O3'" . 6HT A 1 4 ? 6.263 14.705 -1.273 1.00 13.67 ? 4 6HT A "O3'" 1
HETATM 74 C "C2'" . 6HT A 1 4 ? 7.492 13.641 0.507 1.00 10.30 ? 4 6HT A "C2'" 1
HETATM 75 C "C1'" . 6HT A 1 4 ? 7.318 13.029 2.062 1.00 10.36 ? 4 6HT A "C1'" 1
HETATM 76 C "C6'" . 6HT A 1 4 ? 6.417 14.078 2.828 1.00 9.29 ? 4 6HT A "C6'" 1
HETATM 77 N N1 . 6HT A 1 4 ? 6.926 11.604 1.976 1.00 10.29 ? 4 6HT A N1 1
HETATM 78 C C2 . 6HT A 1 4 ? 7.901 10.638 1.976 1.00 6.51 ? 4 6HT A C2 1
HETATM 79 O O2 . 6HT A 1 4 ? 9.104 10.865 2.036 1.00 11.34 ? 4 6HT A O2 1
HETATM 80 N N3 . 6HT A 1 4 ? 7.423 9.368 1.912 1.00 9.62 ? 4 6HT A N3 1
HETATM 81 C C4 . 6HT A 1 4 ? 6.107 8.985 1.808 1.00 13.39 ? 4 6HT A C4 1
HETATM 82 O O4 . 6HT A 1 4 ? 5.823 7.783 1.724 1.00 14.89 ? 4 6HT A O4 1
HETATM 83 C C5 . 6HT A 1 4 ? 5.150 10.058 1.802 1.00 9.65 ? 4 6HT A C5 1
HETATM 84 C C5M . 6HT A 1 4 ? 3.662 9.824 1.747 1.00 9.41 ? 4 6HT A C5M 1
HETATM 85 C C6 . 6HT A 1 4 ? 5.591 11.310 1.920 1.00 10.00 ? 4 6HT A C6 1
HETATM 86 P P . 6HA A 1 5 ? 6.331 13.922 -2.658 1.00 12.71 ? 5 6HA A P 1
HETATM 87 O OP1 . 6HA A 1 5 ? 6.366 15.015 -3.687 1.00 14.37 ? 5 6HA A OP1 1
HETATM 88 O OP2 . 6HA A 1 5 ? 5.361 12.815 -2.812 1.00 13.45 ? 5 6HA A OP2 1
HETATM 89 O "O5'" . 6HA A 1 5 ? 7.798 13.398 -2.625 1.00 9.76 ? 5 6HA A "O5'" 1
HETATM 90 C "C5'" . 6HA A 1 5 ? 8.260 12.244 -3.388 1.00 14.13 ? 5 6HA A "C5'" 1
HETATM 91 C "C4'" . 6HA A 1 5 ? 9.630 11.761 -2.903 1.00 9.80 ? 5 6HA A "C4'" 1
HETATM 92 O "O4'" . 6HA A 1 5 ? 9.273 11.176 -1.621 1.00 10.09 ? 5 6HA A "O4'" 1
HETATM 93 C "C3'" . 6HA A 1 5 ? 9.982 10.527 -3.816 1.00 9.28 ? 5 6HA A "C3'" 1
HETATM 94 O "O3'" . 6HA A 1 5 ? 10.446 11.265 -5.031 1.00 11.86 ? 5 6HA A "O3'" 1
HETATM 95 C "C2'" . 6HA A 1 5 ? 11.330 9.967 -3.222 1.00 8.95 ? 5 6HA A "C2'" 1
HETATM 96 C "C1'" . 6HA A 1 5 ? 11.076 9.555 -1.629 1.00 13.00 ? 5 6HA A "C1'" 1
HETATM 97 C "C6'" . 6HA A 1 5 ? 10.461 10.872 -0.949 1.00 9.54 ? 5 6HA A "C6'" 1
HETATM 98 N N9 . 6HA A 1 5 ? 10.181 8.381 -1.591 1.00 9.40 ? 5 6HA A N9 1
HETATM 99 C C8 . 6HA A 1 5 ? 8.810 8.275 -1.495 1.00 8.73 ? 5 6HA A C8 1
HETATM 100 N N7 . 6HA A 1 5 ? 8.389 7.041 -1.495 1.00 11.21 ? 5 6HA A N7 1
HETATM 101 C C5 . 6HA A 1 5 ? 9.575 6.287 -1.603 1.00 9.88 ? 5 6HA A C5 1
HETATM 102 C C6 . 6HA A 1 5 ? 9.804 4.906 -1.654 1.00 9.39 ? 5 6HA A C6 1
HETATM 103 N N6 . 6HA A 1 5 ? 8.843 3.999 -1.602 1.00 9.52 ? 5 6HA A N6 1
HETATM 104 N N1 . 6HA A 1 5 ? 11.098 4.441 -1.757 1.00 13.41 ? 5 6HA A N1 1
HETATM 105 C C2 . 6HA A 1 5 ? 12.054 5.368 -1.803 1.00 11.98 ? 5 6HA A C2 1
HETATM 106 N N3 . 6HA A 1 5 ? 11.937 6.706 -1.762 1.00 9.48 ? 5 6HA A N3 1
HETATM 107 C C4 . 6HA A 1 5 ? 10.685 7.109 -1.660 1.00 6.81 ? 5 6HA A C4 1
HETATM 108 P P . 6HC A 1 6 ? 10.376 10.532 -6.442 1.00 15.48 ? 6 6HC A P 1
HETATM 109 O OP1 . 6HC A 1 6 ? 10.612 11.601 -7.455 1.00 13.27 ? 6 6HC A OP1 1
HETATM 110 O OP2 . 6HC A 1 6 ? 9.177 9.667 -6.485 1.00 13.75 ? 6 6HC A OP2 1
HETATM 111 O "O5'" . 6HC A 1 6 ? 11.574 9.536 -6.523 1.00 12.37 ? 6 6HC A "O5'" 1
HETATM 112 C "C5'" . 6HC A 1 6 ? 12.973 9.923 -6.521 1.00 9.53 ? 6 6HC A "C5'" 1
HETATM 113 C "C4'" . 6HC A 1 6 ? 13.939 8.772 -6.281 1.00 9.10 ? 6 6HC A "C4'" 1
HETATM 114 O "O4'" . 6HC A 1 6 ? 13.611 8.350 -4.937 1.00 11.16 ? 6 6HC A "O4'" 1
HETATM 115 C "C3'" . 6HC A 1 6 ? 13.594 7.662 -7.299 1.00 9.72 ? 6 6HC A "C3'" 1
HETATM 116 O "O3'" . 6HC A 1 6 ? 14.169 8.137 -8.574 1.00 14.01 ? 6 6HC A "O3'" 1
HETATM 117 C "C2'" . 6HC A 1 6 ? 14.475 6.407 -6.942 1.00 11.55 ? 6 6HC A "C2'" 1
HETATM 118 C "C1'" . 6HC A 1 6 ? 14.180 6.024 -5.373 1.00 12.13 ? 6 6HC A "C1'" 1
HETATM 119 C "C6'" . 6HC A 1 6 ? 14.476 7.351 -4.505 1.00 12.01 ? 6 6HC A "C6'" 1
HETATM 120 N N1 . 6HC A 1 6 ? 12.885 5.326 -5.229 1.00 7.07 ? 6 6HC A N1 1
HETATM 121 C C2 . 6HC A 1 6 ? 12.894 3.946 -5.344 1.00 7.96 ? 6 6HC A C2 1
HETATM 122 O O2 . 6HC A 1 6 ? 13.991 3.417 -5.584 1.00 9.20 ? 6 6HC A O2 1
HETATM 123 N N3 . 6HC A 1 6 ? 11.726 3.233 -5.205 1.00 11.39 ? 6 6HC A N3 1
HETATM 124 C C4 . 6HC A 1 6 ? 10.597 3.914 -4.978 1.00 9.37 ? 6 6HC A C4 1
HETATM 125 N N4 . 6HC A 1 6 ? 9.460 3.216 -4.856 1.00 12.25 ? 6 6HC A N4 1
HETATM 126 C C5 . 6HC A 1 6 ? 10.562 5.332 -4.872 1.00 11.62 ? 6 6HC A C5 1
HETATM 127 C C6 . 6HC A 1 6 ? 11.724 6.018 -5.017 1.00 8.67 ? 6 6HC A C6 1
HETATM 128 P P . 6HA A 1 7 ? 13.466 7.699 -9.928 1.00 15.99 ? 7 6HA A P 1
HETATM 129 O OP1 . 6HA A 1 7 ? 14.042 8.605 -10.959 1.00 21.54 ? 7 6HA A OP1 1
HETATM 130 O OP2 . 6HA A 1 7 ? 12.027 7.440 -9.894 1.00 13.06 ? 7 6HA A OP2 1
HETATM 131 O "O5'" . 6HA A 1 7 ? 14.065 6.288 -10.251 1.00 12.21 ? 7 6HA A "O5'" 1
HETATM 132 C "C5'" . 6HA A 1 7 ? 15.485 6.122 -10.477 1.00 11.43 ? 7 6HA A "C5'" 1
HETATM 133 C "C4'" . 6HA A 1 7 ? 15.863 4.629 -10.408 1.00 9.31 ? 7 6HA A "C4'" 1
HETATM 134 O "O4'" . 6HA A 1 7 ? 15.530 4.357 -9.034 1.00 8.50 ? 7 6HA A "O4'" 1
HETATM 135 C "C3'" . 6HA A 1 7 ? 14.797 3.832 -11.230 1.00 8.10 ? 7 6HA A "C3'" 1
HETATM 136 O "O3'" . 6HA A 1 7 ? 15.272 4.023 -12.603 1.00 9.02 ? 7 6HA A "O3'" 1
HETATM 137 C "C2'" . 6HA A 1 7 ? 15.119 2.298 -10.985 1.00 14.25 ? 7 6HA A "C2'" 1
HETATM 138 C "C1'" . 6HA A 1 7 ? 14.934 1.994 -9.359 1.00 10.57 ? 7 6HA A "C1'" 1
HETATM 139 C "C6'" . 6HA A 1 7 ? 15.890 3.077 -8.645 1.00 8.60 ? 7 6HA A "C6'" 1
HETATM 140 N N9 . 6HA A 1 7 ? 13.502 2.138 -9.011 1.00 11.40 ? 7 6HA A N9 1
HETATM 141 C C8 . 6HA A 1 7 ? 12.700 3.223 -8.762 1.00 9.86 ? 7 6HA A C8 1
HETATM 142 N N7 . 6HA A 1 7 ? 11.440 2.909 -8.480 1.00 10.44 ? 7 6HA A N7 1
HETATM 143 C C5 . 6HA A 1 7 ? 11.437 1.521 -8.553 1.00 7.95 ? 7 6HA A C5 1
HETATM 144 C C6 . 6HA A 1 7 ? 10.400 0.564 -8.359 1.00 12.42 ? 7 6HA A C6 1
HETATM 145 N N6 . 6HA A 1 7 ? 9.151 0.837 -8.049 1.00 13.18 ? 7 6HA A N6 1
HETATM 146 N N1 . 6HA A 1 7 ? 10.751 -0.754 -8.516 1.00 9.60 ? 7 6HA A N1 1
HETATM 147 C C2 . 6HA A 1 7 ? 12.003 -1.056 -8.829 1.00 10.67 ? 7 6HA A C2 1
HETATM 148 N N3 . 6HA A 1 7 ? 13.051 -0.250 -9.030 1.00 12.58 ? 7 6HA A N3 1
HETATM 149 C C4 . 6HA A 1 7 ? 12.675 1.042 -8.874 1.00 9.72 ? 7 6HA A C4 1
HETATM 150 P P . 6HC A 1 8 ? 14.237 4.084 -13.819 1.00 11.11 ? 8 6HC A P 1
HETATM 151 O OP1 . 6HC A 1 8 ? 15.125 4.568 -14.916 1.00 12.61 ? 8 6HC A OP1 1
HETATM 152 O OP2 . 6HC A 1 8 ? 12.976 4.777 -13.458 1.00 11.67 ? 8 6HC A OP2 1
HETATM 153 O "O5'" . 6HC A 1 8 ? 13.807 2.592 -14.044 1.00 11.09 ? 8 6HC A "O5'" 1
HETATM 154 C "C5'" . 6HC A 1 8 ? 14.750 1.636 -14.595 1.00 10.83 ? 8 6HC A "C5'" 1
HETATM 155 C "C4'" . 6HC A 1 8 ? 14.227 0.193 -14.517 1.00 10.27 ? 8 6HC A "C4'" 1
HETATM 156 O "O4'" . 6HC A 1 8 ? 14.122 0.035 -13.092 1.00 8.78 ? 8 6HC A "O4'" 1
HETATM 157 C "C3'" . 6HC A 1 8 ? 12.781 0.140 -15.060 1.00 12.40 ? 8 6HC A "C3'" 1
HETATM 158 O "O3'" . 6HC A 1 8 ? 12.903 0.236 -16.513 1.00 9.10 ? 8 6HC A "O3'" 1
HETATM 159 C "C2'" . 6HC A 1 8 ? 12.218 -1.284 -14.767 1.00 11.18 ? 8 6HC A "C2'" 1
HETATM 160 C "C1'" . 6HC A 1 8 ? 12.375 -1.655 -13.131 1.00 6.43 ? 8 6HC A "C1'" 1
HETATM 161 C "C6'" . 6HC A 1 8 ? 13.843 -1.264 -12.722 1.00 6.74 ? 8 6HC A "C6'" 1
HETATM 162 N N1 . 6HC A 1 8 ? 11.165 -1.077 -12.530 1.00 10.33 ? 8 6HC A N1 1
HETATM 163 C C2 . 6HC A 1 8 ? 10.134 -1.969 -12.211 1.00 10.23 ? 8 6HC A C2 1
HETATM 164 O O2 . 6HC A 1 8 ? 10.275 -3.199 -12.421 1.00 10.57 ? 8 6HC A O2 1
HETATM 165 N N3 . 6HC A 1 8 ? 9.017 -1.434 -11.657 1.00 8.92 ? 8 6HC A N3 1
HETATM 166 C C4 . 6HC A 1 8 ? 8.921 -0.128 -11.430 1.00 9.28 ? 8 6HC A C4 1
HETATM 167 N N4 . 6HC A 1 8 ? 7.800 0.399 -10.935 1.00 10.71 ? 8 6HC A N4 1
HETATM 168 C C5 . 6HC A 1 8 ? 9.977 0.786 -11.742 1.00 8.08 ? 8 6HC A C5 1
HETATM 169 C C6 . 6HC A 1 8 ? 11.079 0.271 -12.254 1.00 6.61 ? 8 6HC A C6 1
HETATM 170 O O . HOH B 2 . ? -7.219 2.586 11.787 1.00 14.53 ? 9 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 11.836 2.779 -17.194 1.00 14.69 ? 10 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 10.823 3.802 -14.819 1.00 21.47 ? 11 HOH A O 1
HETATM 173 O O . HOH B 2 . ? -8.251 8.197 6.171 1.00 18.02 ? 12 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 14.170 4.178 -17.534 1.00 18.47 ? 13 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 1.099 7.873 4.669 1.00 21.24 ? 14 HOH A O 1
HETATM 176 O O . HOH B 2 . ? -3.236 3.418 7.051 1.00 19.68 ? 15 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 14.894 -0.805 -17.911 1.00 20.49 ? 16 HOH A O 1
HETATM 178 O O . HOH B 2 . ? -1.009 12.949 11.661 1.00 20.37 ? 17 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 11.179 5.395 -11.430 1.00 23.34 ? 18 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 9.784 7.421 -8.278 1.00 22.39 ? 19 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 2.735 10.976 -1.405 1.00 30.11 ? 20 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 0.097 9.918 1.186 1.00 21.28 ? 21 HOH A O 1
HETATM 183 O O . HOH B 2 . ? -9.246 4.887 10.940 1.00 28.99 ? 22 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 5.534 9.982 -1.633 1.00 27.13 ? 23 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 1.655 12.911 10.259 1.00 30.80 ? 24 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 3.318 5.719 5.120 1.00 31.98 ? 25 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 9.447 4.687 -8.224 1.00 21.57 ? 26 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 10.487 14.143 -6.095 1.00 27.16 ? 27 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 14.095 8.557 -13.301 1.00 29.53 ? 28 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 7.345 4.645 -4.729 1.00 35.19 ? 29 HOH A O 1
HETATM 191 O O . HOH B 2 . ? -5.734 8.321 2.743 1.00 30.15 ? 30 HOH A O 1
HETATM 192 O O . HOH B 2 . ? 16.274 6.902 -14.376 1.00 31.27 ? 31 HOH A O 1
HETATM 193 O O . HOH B 2 . ? 7.715 3.353 -10.632 1.00 22.92 ? 32 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 11.172 15.953 -8.022 1.00 27.19 ? 33 HOH A O 1
HETATM 195 O O . HOH B 2 . ? 14.676 7.257 -1.261 1.00 28.44 ? 34 HOH A O 1
HETATM 196 O O . HOH B 2 . ? -2.959 14.689 12.321 1.00 29.74 ? 35 HOH A O 1
HETATM 197 O O . HOH B 2 . ? 7.330 3.414 -8.060 1.00 34.19 ? 36 HOH A O 1
HETATM 198 O O . HOH B 2 . ? 8.183 7.648 -5.230 1.00 28.02 ? 37 HOH A O 1
HETATM 199 O O . HOH B 2 . ? 1.921 4.042 9.104 1.00 38.96 ? 39 HOH A O 1
HETATM 200 O O . HOH B 2 . ? 5.827 8.932 -3.863 1.00 24.86 ? 40 HOH A O 1
HETATM 201 O O . HOH B 2 . ? 6.079 5.617 -1.571 1.00 31.32 ? 41 HOH A O 1
HETATM 202 O O . HOH B 2 . ? 3.281 14.625 10.552 1.00 27.94 ? 42 HOH A O 1
HETATM 203 O O . HOH B 2 . ? 13.745 11.423 -10.640 1.00 30.52 ? 43 HOH A O 1
HETATM 204 O O . HOH B 2 . ? 15.811 -0.693 -7.390 1.00 26.07 ? 44 HOH A O 1
HETATM 205 O O . HOH B 2 . ? -4.290 15.719 10.008 1.00 36.31 ? 45 HOH A O 1
HETATM 206 O O . HOH B 2 . ? -1.719 7.503 4.084 1.00 48.03 ? 46 HOH A O 1
HETATM 207 O O . HOH B 2 . ? 2.018 17.150 9.487 1.00 59.44 ? 47 HOH A O 1
HETATM 208 O O . HOH B 2 . ? -0.164 14.456 9.392 1.00 44.49 ? 48 HOH A O 1
HETATM 209 O O . HOH B 2 . ? -11.908 3.517 11.064 1.00 45.96 ? 49 HOH A O 1
#