data_465D
#
_entry.id 465D
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 465D pdb_0000465d 10.2210/pdb465d/pdb
NDB DD0015 ? ?
RCSB RCSB001347 ? ?
WWPDB D_1000001347 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1999-08-25
2 'Structure model' 1 1 2008-04-26
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2018-02-14
5 'Structure model' 1 4 2023-12-27
6 'Structure model' 1 5 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Experimental preparation'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Derived calculations'
7 6 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' exptl_crystal_grow
2 5 'Structure model' chem_comp_atom
3 5 'Structure model' chem_comp_bond
4 5 'Structure model' database_2
5 5 'Structure model' struct_site
6 6 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_exptl_crystal_grow.pdbx_details'
2 4 'Structure model' '_exptl_crystal_grow.temp'
3 5 'Structure model' '_database_2.pdbx_DOI'
4 5 'Structure model' '_database_2.pdbx_database_accession'
5 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 465D
_pdbx_database_status.recvd_initial_deposition_date 1999-04-14
_pdbx_database_status.deposit_site NDB
_pdbx_database_status.process_site NDB
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Adams, A.' 1
'Guss, J.M.' 2
'Collyer, C.A.' 3
'Denny, W.A.' 4
'Wakelin, L.P.' 5
#
_citation.id primary
_citation.title
;Crystal structure of the topoisomerase II poison 9-amino-[N-(2-dimethylamino)ethyl]acridine-4-carboxamide bound to the DNA hexanucleotide d(CGTACG)2.
;
_citation.journal_abbrev Biochemistry
_citation.journal_volume 38
_citation.page_first 9221
_citation.page_last 9233
_citation.year 1999
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 10413496
_citation.pdbx_database_id_DOI 10.1021/bi990352m
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Adams, A.' 1 ?
primary 'Guss, J.M.' 2 ?
primary 'Collyer, C.A.' 3 ?
primary 'Denny, W.A.' 4 ?
primary 'Wakelin, L.P.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
;
1809.217 1 ? ? ? ?
2 non-polymer syn '9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE' 308.378 2 ? ? ? ?
3 water nat water 18.015 29 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 '9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE' 9AD
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
9AD non-polymer . '9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE' ? 'C18 H20 N4 O' 308.378
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1001 1001 DC C A . n
A 1 2 DG 2 1002 1002 DG G A . n
A 1 3 DT 3 1003 1003 DT T A . n
A 1 4 DA 4 1004 1004 DA A A . n
A 1 5 DC 5 1005 1005 DC C A . n
A 1 6 DG 6 1006 1006 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 9AD 1 3014 3014 9AD 9AD A .
C 2 9AD 1 3015 3015 9AD 9AD A .
D 3 HOH 1 4001 4001 HOH HOH A .
D 3 HOH 2 4002 4002 HOH HOH A .
D 3 HOH 3 4003 4003 HOH HOH A .
D 3 HOH 4 4004 4004 HOH HOH A .
D 3 HOH 5 4005 4005 HOH HOH A .
D 3 HOH 6 4006 4006 HOH HOH A .
D 3 HOH 7 4007 4007 HOH HOH A .
D 3 HOH 8 4008 4008 HOH HOH A .
D 3 HOH 9 4009 4009 HOH HOH A .
D 3 HOH 10 4010 4010 HOH HOH A .
D 3 HOH 11 4011 4011 HOH HOH A .
D 3 HOH 12 4012 4012 HOH HOH A .
D 3 HOH 13 4013 4013 HOH HOH A .
D 3 HOH 14 4014 4014 HOH HOH A .
D 3 HOH 15 4015 4015 HOH HOH A .
D 3 HOH 16 4016 4016 HOH HOH A .
D 3 HOH 17 4017 4017 HOH HOH A .
D 3 HOH 18 4018 4018 HOH HOH A .
D 3 HOH 19 4019 4019 HOH HOH A .
D 3 HOH 20 4020 4020 HOH HOH A .
D 3 HOH 21 4021 4021 HOH HOH A .
D 3 HOH 22 4022 4022 HOH HOH A .
D 3 HOH 23 4023 4023 HOH HOH A .
D 3 HOH 24 4024 4024 HOH HOH A .
D 3 HOH 25 4025 4025 HOH HOH A .
D 3 HOH 26 4026 4026 HOH HOH A .
D 3 HOH 27 4027 4027 HOH HOH A .
D 3 HOH 28 4028 4028 HOH HOH A .
D 3 HOH 29 4029 4029 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
_software.date
_software.type
_software.location
_software.language
SHELXS phasing . ? 1 ? ? ? ?
SHELXL-97 refinement . ? 2 ? ? ? ?
DENZO 'data reduction' . ? 3 ? ? ? ?
SCALEPACK 'data scaling' . ? 4 ? ? ? ?
#
_cell.entry_id 465D
_cell.length_a 30.161
_cell.length_b 30.161
_cell.length_c 39.692
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 465D
_symmetry.space_group_name_H-M 'P 64'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting hexagonal
_symmetry.Int_Tables_number 172
#
_exptl.entry_id 465D
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 55.41
_exptl_crystal.density_Matthews 2.76
_exptl_crystal.description ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 285
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pdbx_details
;0.5 MM DNA, 20 MM SODIUM CACODYLATE BUFFER, PH 6.5, 4 MM MAGNESIUM ACETATE, 1 MM COBALT(II) CHLORIDE, 0.33 MM SPERMINE.4HCL, 1 MM 9-AMINO-[N-(2- DIMETHYLAMINO)ETHYL]ACRIDINE-4-CARBOXAMIDE AND 9% MPD EQUILIBRATED AGAINST 1 ML OF A SOLUTION OF 45% MPD IN WATER, VAPOR DIFFUSION, SITTING DROP, temperature 285K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 'SODIUM CACODYLATE' ? ? ?
1 2 1 'MAGNESIUM ACETATE' ? ? ?
1 3 1 COCL2 ? ? ?
1 4 1 SPERMINE ? ? ?
1 5 1 MPD ? ? ?
1 6 2 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 110
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS II'
_diffrn_detector.pdbx_collection_date 1997-12-12
_diffrn_detector.details 'FOCUSING MIRROR'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5418
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 465D
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30.0
_reflns.d_resolution_high 1.6
_reflns.number_obs 2763
_reflns.number_all 2763
_reflns.percent_possible_obs 98.4
_reflns.pdbx_Rmerge_I_obs 0.0290000
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 56.8
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 24.7
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.60
_reflns_shell.d_res_low 1.66
_reflns_shell.percent_possible_all 97.0
_reflns_shell.Rmerge_I_obs 0.1420000
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 5.0
_reflns_shell.pdbx_redundancy 5.3
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 465D
_refine.ls_number_reflns_obs 2705
_refine.ls_number_reflns_all 2705
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 16.0
_refine.ls_d_res_high 1.6
_refine.ls_percent_reflns_obs 98.5
_refine.ls_R_factor_obs 0.1945000
_refine.ls_R_factor_all 0.1958000
_refine.ls_R_factor_R_work 0.1934000
_refine.ls_R_factor_R_free 0.2560000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 8.3
_refine.ls_number_reflns_R_free 225
_refine.ls_number_parameters 791
_refine.ls_number_restraints 999
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'MOEWS & KRETSINGER,J.MOL.BIOL.91(1973)201-228'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model DDF073
_refine.pdbx_method_to_determine_struct 'ISOMORPHOUS REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 465D
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues 1
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen 182.5
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 46
_refine_hist.number_atoms_solvent 29
_refine_hist.number_atoms_total 195
_refine_hist.d_res_high 1.6
_refine_hist.d_res_low 16.0
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.021 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist 0.038 ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.023 ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.entry_id 465D
_pdbx_refine.R_factor_all_no_cutoff ?
_pdbx_refine.R_factor_obs_no_cutoff ?
_pdbx_refine.free_R_factor_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_no_cutoff ?
_pdbx_refine.R_factor_all_4sig_cutoff 0.1945000
_pdbx_refine.R_factor_obs_4sig_cutoff 0.1923000
_pdbx_refine.free_R_factor_4sig_cutoff 0.2535000
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 8.2
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 219
_pdbx_refine.number_reflns_obs_4sig_cutoff 2664
_pdbx_refine.number_reflns_obs_no_cutoff ?
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.free_R_error_no_cutoff ?
#
_database_PDB_matrix.entry_id 465D
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 465D
_struct.title 'STRUCTURE OF THE TOPOISOMERASE II POISON BOUND TO DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 465D
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'TOPOISOMERASE II POISON, HEXANUCLEOTIDE, D(CGTACG)2, 9-AMINO-DACA, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 465D
_struct_ref.pdbx_db_accession 465D
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 465D
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 465D
_struct_ref_seq.db_align_beg 1001
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 1006
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1001
_struct_ref_seq.pdbx_auth_seq_align_end 1006
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 30.1610000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A 9AD 3014 ? 9 'BINDING SITE FOR RESIDUE 9AD A 3014'
AC2 Software A 9AD 3015 ? 8 'BINDING SITE FOR RESIDUE 9AD A 3015'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 9 DC A 1 ? DC A 1001 . ? 1_555 ?
2 AC1 9 DG A 2 ? DG A 1002 . ? 1_555 ?
3 AC1 9 DG A 2 ? DG A 1002 . ? 3_664 ?
4 AC1 9 DA A 4 ? DA A 1004 . ? 2_655 ?
5 AC1 9 DC A 5 ? DC A 1005 . ? 4_655 ?
6 AC1 9 DG A 6 ? DG A 1006 . ? 4_655 ?
7 AC1 9 9AD C . ? 9AD A 3015 . ? 4_655 ?
8 AC1 9 HOH D . ? HOH A 4010 . ? 1_555 ?
9 AC1 9 HOH D . ? HOH A 4024 . ? 1_555 ?
10 AC2 8 DC A 1 ? DC A 1001 . ? 1_445 ?
11 AC2 8 DC A 1 ? DC A 1001 . ? 4_655 ?
12 AC2 8 DG A 6 ? DG A 1006 . ? 4_545 ?
13 AC2 8 DG A 6 ? DG A 1006 . ? 1_555 ?
14 AC2 8 9AD B . ? 9AD A 3014 . ? 4_655 ?
15 AC2 8 HOH D . ? HOH A 4012 . ? 1_555 ?
16 AC2 8 HOH D . ? HOH A 4015 . ? 4_545 ?
17 AC2 8 HOH D . ? HOH A 4015 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C4'" A DC 1001 ? ? "C3'" A DC 1001 ? ? 1.609 1.529 0.080 0.010 N
2 1 "C2'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.583 1.519 0.064 0.010 N
3 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.541 1.420 0.121 0.011 N
4 1 "C4'" A DG 1002 ? ? "C3'" A DG 1002 ? ? 1.621 1.529 0.092 0.010 N
5 1 "C2'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.601 1.519 0.082 0.010 N
6 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.521 1.420 0.101 0.011 N
7 1 "O3'" A DG 1002 ? ? P A DT 1003 ? ? 1.680 1.607 0.073 0.012 Y
8 1 "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? 1.564 1.512 0.052 0.007 N
9 1 "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? 1.617 1.529 0.088 0.010 N
10 1 "C2'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 1.610 1.519 0.091 0.010 N
11 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 1.543 1.420 0.123 0.011 N
12 1 "C4'" A DA 1004 ? ? "C3'" A DA 1004 ? ? 1.596 1.529 0.067 0.010 N
13 1 "C2'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 1.587 1.519 0.068 0.010 N
14 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 1.540 1.420 0.120 0.011 N
15 1 "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 1.615 1.529 0.086 0.010 N
16 1 "C2'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 1.604 1.519 0.085 0.010 N
17 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 1.491 1.420 0.071 0.011 N
18 1 "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 1.560 1.512 0.048 0.007 N
19 1 "C4'" A DG 1006 ? ? "C3'" A DG 1006 ? ? 1.619 1.529 0.090 0.010 N
20 1 "C2'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 1.598 1.519 0.079 0.010 N
21 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 1.512 1.420 0.092 0.011 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 N1 A DC 1001 ? ? "C1'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 125.27 114.30 10.97 1.40 N
2 1 "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 101.87 109.40 -7.53 0.80 N
3 1 P A DG 1002 ? ? "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? 110.66 120.90 -10.24 1.60 N
4 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 99.88 105.90 -6.02 0.80 N
5 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? N9 A DG 1002 ? ? 98.62 108.00 -9.38 0.70 N
6 1 C6 A DG 1002 ? ? N1 A DG 1002 ? ? C2 A DG 1002 ? ? 120.48 125.10 -4.62 0.60 N
7 1 C5 A DG 1002 ? ? C6 A DG 1002 ? ? O6 A DG 1002 ? ? 124.24 128.60 -4.36 0.60 N
8 1 "O5'" A DT 1003 ? ? "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? 99.49 109.40 -9.91 0.80 N
9 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 97.02 105.90 -8.88 0.80 N
10 1 "C3'" A DT 1003 ? ? "O3'" A DT 1003 ? ? P A DA 1004 ? ? 126.98 119.70 7.28 1.20 Y
11 1 "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 104.36 109.40 -5.04 0.80 N
12 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? "C2'" A DA 1004 ? ? 100.35 105.90 -5.55 0.80 N
13 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? N9 A DA 1004 ? ? 96.37 108.00 -11.63 0.70 N
14 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 100.53 105.90 -5.37 0.80 N
15 1 "O4'" A DC 1005 ? ? "C1'" A DC 1005 ? ? N1 A DC 1005 ? ? 114.04 108.30 5.74 0.30 N
16 1 C6 A DC 1005 ? ? N1 A DC 1005 ? ? C2 A DC 1005 ? ? 122.91 120.30 2.61 0.40 N
17 1 "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 101.07 109.40 -8.33 0.80 N
18 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? 109.98 120.90 -10.92 1.60 N
19 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? "C2'" A DG 1006 ? ? 101.04 105.90 -4.86 0.80 N
20 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? N9 A DG 1006 ? ? 99.88 108.00 -8.12 0.70 N
21 1 N9 A DG 1006 ? ? C4 A DG 1006 ? ? C5 A DG 1006 ? ? 102.96 105.40 -2.44 0.40 N
22 1 C5 A DG 1006 ? ? C6 A DG 1006 ? ? O6 A DG 1006 ? ? 123.49 128.60 -5.11 0.60 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 4025 ? D HOH .
2 1 A HOH 4029 ? D HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
9AD C1 C Y N 1
9AD C2 C Y N 2
9AD C3 C Y N 3
9AD C4 C Y N 4
9AD C5 C Y N 5
9AD C6 C Y N 6
9AD C7 C Y N 7
9AD C8 C Y N 8
9AD C9 C Y N 9
9AD N10 N Y N 10
9AD C11 C Y N 11
9AD C12 C Y N 12
9AD C13 C Y N 13
9AD C14 C Y N 14
9AD N9 N N N 15
9AD CD1 C N N 16
9AD OD1 O N N 17
9AD ND1 N N N 18
9AD ND2 N N N 19
9AD CD2 C N N 20
9AD CD3 C N N 21
9AD CD7 C N N 22
9AD CD8 C N N 23
9AD H1 H N N 24
9AD H2 H N N 25
9AD H3 H N N 26
9AD H5 H N N 27
9AD H6 H N N 28
9AD H7 H N N 29
9AD H8 H N N 30
9AD H9A H N N 31
9AD H9B H N N 32
9AD HD1 H N N 33
9AD HD21 H N N 34
9AD HD22 H N N 35
9AD HD31 H N N 36
9AD HD32 H N N 37
9AD HD71 H N N 38
9AD HD72 H N N 39
9AD HD73 H N N 40
9AD HD81 H N N 41
9AD HD82 H N N 42
9AD HD83 H N N 43
DA OP3 O N N 44
DA P P N N 45
DA OP1 O N N 46
DA OP2 O N N 47
DA "O5'" O N N 48
DA "C5'" C N N 49
DA "C4'" C N R 50
DA "O4'" O N N 51
DA "C3'" C N S 52
DA "O3'" O N N 53
DA "C2'" C N N 54
DA "C1'" C N R 55
DA N9 N Y N 56
DA C8 C Y N 57
DA N7 N Y N 58
DA C5 C Y N 59
DA C6 C Y N 60
DA N6 N N N 61
DA N1 N Y N 62
DA C2 C Y N 63
DA N3 N Y N 64
DA C4 C Y N 65
DA HOP3 H N N 66
DA HOP2 H N N 67
DA "H5'" H N N 68
DA "H5''" H N N 69
DA "H4'" H N N 70
DA "H3'" H N N 71
DA "HO3'" H N N 72
DA "H2'" H N N 73
DA "H2''" H N N 74
DA "H1'" H N N 75
DA H8 H N N 76
DA H61 H N N 77
DA H62 H N N 78
DA H2 H N N 79
DC OP3 O N N 80
DC P P N N 81
DC OP1 O N N 82
DC OP2 O N N 83
DC "O5'" O N N 84
DC "C5'" C N N 85
DC "C4'" C N R 86
DC "O4'" O N N 87
DC "C3'" C N S 88
DC "O3'" O N N 89
DC "C2'" C N N 90
DC "C1'" C N R 91
DC N1 N N N 92
DC C2 C N N 93
DC O2 O N N 94
DC N3 N N N 95
DC C4 C N N 96
DC N4 N N N 97
DC C5 C N N 98
DC C6 C N N 99
DC HOP3 H N N 100
DC HOP2 H N N 101
DC "H5'" H N N 102
DC "H5''" H N N 103
DC "H4'" H N N 104
DC "H3'" H N N 105
DC "HO3'" H N N 106
DC "H2'" H N N 107
DC "H2''" H N N 108
DC "H1'" H N N 109
DC H41 H N N 110
DC H42 H N N 111
DC H5 H N N 112
DC H6 H N N 113
DG OP3 O N N 114
DG P P N N 115
DG OP1 O N N 116
DG OP2 O N N 117
DG "O5'" O N N 118
DG "C5'" C N N 119
DG "C4'" C N R 120
DG "O4'" O N N 121
DG "C3'" C N S 122
DG "O3'" O N N 123
DG "C2'" C N N 124
DG "C1'" C N R 125
DG N9 N Y N 126
DG C8 C Y N 127
DG N7 N Y N 128
DG C5 C Y N 129
DG C6 C N N 130
DG O6 O N N 131
DG N1 N N N 132
DG C2 C N N 133
DG N2 N N N 134
DG N3 N N N 135
DG C4 C Y N 136
DG HOP3 H N N 137
DG HOP2 H N N 138
DG "H5'" H N N 139
DG "H5''" H N N 140
DG "H4'" H N N 141
DG "H3'" H N N 142
DG "HO3'" H N N 143
DG "H2'" H N N 144
DG "H2''" H N N 145
DG "H1'" H N N 146
DG H8 H N N 147
DG H1 H N N 148
DG H21 H N N 149
DG H22 H N N 150
DT OP3 O N N 151
DT P P N N 152
DT OP1 O N N 153
DT OP2 O N N 154
DT "O5'" O N N 155
DT "C5'" C N N 156
DT "C4'" C N R 157
DT "O4'" O N N 158
DT "C3'" C N S 159
DT "O3'" O N N 160
DT "C2'" C N N 161
DT "C1'" C N R 162
DT N1 N N N 163
DT C2 C N N 164
DT O2 O N N 165
DT N3 N N N 166
DT C4 C N N 167
DT O4 O N N 168
DT C5 C N N 169
DT C7 C N N 170
DT C6 C N N 171
DT HOP3 H N N 172
DT HOP2 H N N 173
DT "H5'" H N N 174
DT "H5''" H N N 175
DT "H4'" H N N 176
DT "H3'" H N N 177
DT "HO3'" H N N 178
DT "H2'" H N N 179
DT "H2''" H N N 180
DT "H1'" H N N 181
DT H3 H N N 182
DT H71 H N N 183
DT H72 H N N 184
DT H73 H N N 185
DT H6 H N N 186
HOH O O N N 187
HOH H1 H N N 188
HOH H2 H N N 189
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9AD C1 C2 doub Y N 1
9AD C1 C11 sing Y N 2
9AD C1 H1 sing N N 3
9AD C2 C3 sing Y N 4
9AD C2 H2 sing N N 5
9AD C3 C4 doub Y N 6
9AD C3 H3 sing N N 7
9AD C4 C12 sing Y N 8
9AD C4 CD1 sing N N 9
9AD C5 C6 doub Y N 10
9AD C5 C14 sing Y N 11
9AD C5 H5 sing N N 12
9AD C6 C7 sing Y N 13
9AD C6 H6 sing N N 14
9AD C7 C8 doub Y N 15
9AD C7 H7 sing N N 16
9AD C8 C13 sing Y N 17
9AD C8 H8 sing N N 18
9AD C9 C11 doub Y N 19
9AD C9 C13 sing Y N 20
9AD C9 N9 sing N N 21
9AD N10 C12 doub Y N 22
9AD N10 C14 sing Y N 23
9AD C11 C12 sing Y N 24
9AD C13 C14 doub Y N 25
9AD N9 H9A sing N N 26
9AD N9 H9B sing N N 27
9AD CD1 OD1 doub N N 28
9AD CD1 ND1 sing N N 29
9AD ND1 CD2 sing N N 30
9AD ND1 HD1 sing N N 31
9AD ND2 CD3 sing N N 32
9AD ND2 CD7 sing N N 33
9AD ND2 CD8 sing N N 34
9AD CD2 CD3 sing N N 35
9AD CD2 HD21 sing N N 36
9AD CD2 HD22 sing N N 37
9AD CD3 HD31 sing N N 38
9AD CD3 HD32 sing N N 39
9AD CD7 HD71 sing N N 40
9AD CD7 HD72 sing N N 41
9AD CD7 HD73 sing N N 42
9AD CD8 HD81 sing N N 43
9AD CD8 HD82 sing N N 44
9AD CD8 HD83 sing N N 45
DA OP3 P sing N N 46
DA OP3 HOP3 sing N N 47
DA P OP1 doub N N 48
DA P OP2 sing N N 49
DA P "O5'" sing N N 50
DA OP2 HOP2 sing N N 51
DA "O5'" "C5'" sing N N 52
DA "C5'" "C4'" sing N N 53
DA "C5'" "H5'" sing N N 54
DA "C5'" "H5''" sing N N 55
DA "C4'" "O4'" sing N N 56
DA "C4'" "C3'" sing N N 57
DA "C4'" "H4'" sing N N 58
DA "O4'" "C1'" sing N N 59
DA "C3'" "O3'" sing N N 60
DA "C3'" "C2'" sing N N 61
DA "C3'" "H3'" sing N N 62
DA "O3'" "HO3'" sing N N 63
DA "C2'" "C1'" sing N N 64
DA "C2'" "H2'" sing N N 65
DA "C2'" "H2''" sing N N 66
DA "C1'" N9 sing N N 67
DA "C1'" "H1'" sing N N 68
DA N9 C8 sing Y N 69
DA N9 C4 sing Y N 70
DA C8 N7 doub Y N 71
DA C8 H8 sing N N 72
DA N7 C5 sing Y N 73
DA C5 C6 sing Y N 74
DA C5 C4 doub Y N 75
DA C6 N6 sing N N 76
DA C6 N1 doub Y N 77
DA N6 H61 sing N N 78
DA N6 H62 sing N N 79
DA N1 C2 sing Y N 80
DA C2 N3 doub Y N 81
DA C2 H2 sing N N 82
DA N3 C4 sing Y N 83
DC OP3 P sing N N 84
DC OP3 HOP3 sing N N 85
DC P OP1 doub N N 86
DC P OP2 sing N N 87
DC P "O5'" sing N N 88
DC OP2 HOP2 sing N N 89
DC "O5'" "C5'" sing N N 90
DC "C5'" "C4'" sing N N 91
DC "C5'" "H5'" sing N N 92
DC "C5'" "H5''" sing N N 93
DC "C4'" "O4'" sing N N 94
DC "C4'" "C3'" sing N N 95
DC "C4'" "H4'" sing N N 96
DC "O4'" "C1'" sing N N 97
DC "C3'" "O3'" sing N N 98
DC "C3'" "C2'" sing N N 99
DC "C3'" "H3'" sing N N 100
DC "O3'" "HO3'" sing N N 101
DC "C2'" "C1'" sing N N 102
DC "C2'" "H2'" sing N N 103
DC "C2'" "H2''" sing N N 104
DC "C1'" N1 sing N N 105
DC "C1'" "H1'" sing N N 106
DC N1 C2 sing N N 107
DC N1 C6 sing N N 108
DC C2 O2 doub N N 109
DC C2 N3 sing N N 110
DC N3 C4 doub N N 111
DC C4 N4 sing N N 112
DC C4 C5 sing N N 113
DC N4 H41 sing N N 114
DC N4 H42 sing N N 115
DC C5 C6 doub N N 116
DC C5 H5 sing N N 117
DC C6 H6 sing N N 118
DG OP3 P sing N N 119
DG OP3 HOP3 sing N N 120
DG P OP1 doub N N 121
DG P OP2 sing N N 122
DG P "O5'" sing N N 123
DG OP2 HOP2 sing N N 124
DG "O5'" "C5'" sing N N 125
DG "C5'" "C4'" sing N N 126
DG "C5'" "H5'" sing N N 127
DG "C5'" "H5''" sing N N 128
DG "C4'" "O4'" sing N N 129
DG "C4'" "C3'" sing N N 130
DG "C4'" "H4'" sing N N 131
DG "O4'" "C1'" sing N N 132
DG "C3'" "O3'" sing N N 133
DG "C3'" "C2'" sing N N 134
DG "C3'" "H3'" sing N N 135
DG "O3'" "HO3'" sing N N 136
DG "C2'" "C1'" sing N N 137
DG "C2'" "H2'" sing N N 138
DG "C2'" "H2''" sing N N 139
DG "C1'" N9 sing N N 140
DG "C1'" "H1'" sing N N 141
DG N9 C8 sing Y N 142
DG N9 C4 sing Y N 143
DG C8 N7 doub Y N 144
DG C8 H8 sing N N 145
DG N7 C5 sing Y N 146
DG C5 C6 sing N N 147
DG C5 C4 doub Y N 148
DG C6 O6 doub N N 149
DG C6 N1 sing N N 150
DG N1 C2 sing N N 151
DG N1 H1 sing N N 152
DG C2 N2 sing N N 153
DG C2 N3 doub N N 154
DG N2 H21 sing N N 155
DG N2 H22 sing N N 156
DG N3 C4 sing N N 157
DT OP3 P sing N N 158
DT OP3 HOP3 sing N N 159
DT P OP1 doub N N 160
DT P OP2 sing N N 161
DT P "O5'" sing N N 162
DT OP2 HOP2 sing N N 163
DT "O5'" "C5'" sing N N 164
DT "C5'" "C4'" sing N N 165
DT "C5'" "H5'" sing N N 166
DT "C5'" "H5''" sing N N 167
DT "C4'" "O4'" sing N N 168
DT "C4'" "C3'" sing N N 169
DT "C4'" "H4'" sing N N 170
DT "O4'" "C1'" sing N N 171
DT "C3'" "O3'" sing N N 172
DT "C3'" "C2'" sing N N 173
DT "C3'" "H3'" sing N N 174
DT "O3'" "HO3'" sing N N 175
DT "C2'" "C1'" sing N N 176
DT "C2'" "H2'" sing N N 177
DT "C2'" "H2''" sing N N 178
DT "C1'" N1 sing N N 179
DT "C1'" "H1'" sing N N 180
DT N1 C2 sing N N 181
DT N1 C6 sing N N 182
DT C2 O2 doub N N 183
DT C2 N3 sing N N 184
DT N3 C4 sing N N 185
DT N3 H3 sing N N 186
DT C4 O4 doub N N 187
DT C4 C5 sing N N 188
DT C5 C7 sing N N 189
DT C5 C6 doub N N 190
DT C7 H71 sing N N 191
DT C7 H72 sing N N 192
DT C7 H73 sing N N 193
DT C6 H6 sing N N 194
HOH O H1 sing N N 195
HOH O H2 sing N N 196
#
_ndb_struct_conf_na.entry_id 465D
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 4_655 0.154 -0.179 0.036 3.104 -12.077 -2.542 1 A_DC1001:DG1006_A A 1001 ? A 1006 ? 19 1
1 A DG 2 1_555 A DC 5 4_655 -0.292 -0.186 0.034 -7.436 -4.798 -2.352 2 A_DG1002:DC1005_A A 1002 ? A 1005 ? 19 1
1 A DT 3 1_555 A DA 4 4_655 0.025 -0.217 -0.029 2.145 -10.633 -2.730 3 A_DT1003:DA1004_A A 1003 ? A 1004 ? 20 1
1 A DA 4 1_555 A DT 3 4_655 -0.025 -0.217 -0.029 -2.145 -10.633 -2.730 4 A_DA1004:DT1003_A A 1004 ? A 1003 ? 20 1
1 A DC 5 1_555 A DG 2 4_655 0.292 -0.186 0.034 7.435 -4.798 -2.352 5 A_DC1005:DG1002_A A 1005 ? A 1002 ? 19 1
1 A DG 6 1_555 A DC 1 4_655 -0.154 -0.179 0.036 -3.104 -12.077 -2.542 6 A_DG1006:DC1001_A A 1006 ? A 1001 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 4_655 A DG 2 1_555 A DC 5 4_655 0.353 0.430 6.899 -0.624 3.709 22.970 -1.634 -1.330 6.870 9.233 1.553
23.272 1 AA_DC1001DG1002:DC1005DG1006_AA A 1001 ? A 1006 ? A 1002 ? A 1005 ?
1 A DG 2 1_555 A DC 5 4_655 A DT 3 1_555 A DA 4 4_655 -0.587 0.025 3.173 0.847 1.714 29.149 -0.310 1.341 3.151 3.401 -1.681
29.210 2 AA_DG1002DT1003:DA1004DC1005_AA A 1002 ? A 1005 ? A 1003 ? A 1004 ?
1 A DT 3 1_555 A DA 4 4_655 A DA 4 1_555 A DT 3 4_655 0.000 1.610 3.240 0.000 -1.812 47.590 2.137 0.000 3.181 -2.245 0.000
47.622 3 AA_DT1003DA1004:DT1003DA1004_AA A 1003 ? A 1004 ? A 1004 ? A 1003 ?
1 A DA 4 1_555 A DT 3 4_655 A DC 5 1_555 A DG 2 4_655 0.587 0.025 3.173 -0.847 1.714 29.149 -0.310 -1.341 3.151 3.400 1.681
29.210 4 AA_DA1004DC1005:DG1002DT1003_AA A 1004 ? A 1003 ? A 1005 ? A 1002 ?
1 A DC 5 1_555 A DG 2 4_655 A DG 6 1_555 A DC 1 4_655 -0.353 0.430 6.899 0.624 3.709 22.970 -1.634 1.330 6.870 9.233 -1.553
23.272 5 AA_DC1005DG1006:DC1001DG1002_AA A 1005 ? A 1002 ? A 1006 ? A 1001 ?
#
_pdbx_initial_refinement_model.accession_code 366D
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details DDF073
#
_atom_sites.entry_id 465D
_atom_sites.fract_transf_matrix[1][1] 0.033155
_atom_sites.fract_transf_matrix[1][2] 0.019142
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.038285
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025194
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DC A 1 1 ? 20.307 10.604 27.303 1.00 17.39 ? 1001 DC A "O5'" 1
ATOM 2 C "C5'" . DC A 1 1 ? 19.433 11.734 27.530 1.00 17.91 ? 1001 DC A "C5'" 1
ATOM 3 C "C4'" . DC A 1 1 ? 18.610 11.911 26.243 1.00 14.48 ? 1001 DC A "C4'" 1
ATOM 4 O "O4'" . DC A 1 1 ? 19.360 12.184 25.044 1.00 18.40 ? 1001 DC A "O4'" 1
ATOM 5 C "C3'" . DC A 1 1 ? 17.747 10.593 25.916 1.00 22.63 ? 1001 DC A "C3'" 1
ATOM 6 O "O3'" . DC A 1 1 ? 16.448 10.862 26.629 1.00 21.32 ? 1001 DC A "O3'" 1
ATOM 7 C "C2'" . DC A 1 1 ? 17.430 10.861 24.382 1.00 23.78 ? 1001 DC A "C2'" 1
ATOM 8 C "C1'" . DC A 1 1 ? 18.776 11.467 23.811 1.00 28.84 ? 1001 DC A "C1'" 1
ATOM 9 N N1 . DC A 1 1 ? 19.828 10.722 23.250 1.00 20.16 ? 1001 DC A N1 1
ATOM 10 C C2 . DC A 1 1 ? 19.977 10.764 21.886 1.00 16.37 ? 1001 DC A C2 1
ATOM 11 O O2 . DC A 1 1 ? 19.142 11.467 21.254 1.00 22.63 ? 1001 DC A O2 1
ATOM 12 N N3 . DC A 1 1 ? 20.984 10.057 21.311 1.00 15.78 ? 1001 DC A N3 1
ATOM 13 C C4 . DC A 1 1 ? 21.810 9.338 22.090 1.00 17.94 ? 1001 DC A C4 1
ATOM 14 N N4 . DC A 1 1 ? 22.801 8.644 21.534 1.00 16.69 ? 1001 DC A N4 1
ATOM 15 C C5 . DC A 1 1 ? 21.661 9.296 23.513 1.00 15.57 ? 1001 DC A C5 1
ATOM 16 C C6 . DC A 1 1 ? 20.658 10.003 24.058 1.00 17.72 ? 1001 DC A C6 1
ATOM 17 P P . DG A 1 2 ? 15.566 9.494 26.969 1.00 23.54 ? 1002 DG A P 1
ATOM 18 O OP1 . DG A 1 2 ? 14.449 9.929 27.940 1.00 25.00 ? 1002 DG A OP1 1
ATOM 19 O OP2 . DG A 1 2 ? 16.467 8.388 27.421 1.00 21.73 ? 1002 DG A OP2 1
ATOM 20 O "O5'" . DG A 1 2 ? 14.964 9.301 25.478 1.00 21.29 ? 1002 DG A "O5'" 1
ATOM 21 C "C5'" . DG A 1 2 ? 13.960 8.234 25.460 1.00 22.69 ? 1002 DG A "C5'" 1
ATOM 22 C "C4'" . DG A 1 2 ? 13.396 8.352 24.025 1.00 27.31 ? 1002 DG A "C4'" 1
ATOM 23 O "O4'" . DG A 1 2 ? 14.355 7.887 23.048 1.00 28.59 ? 1002 DG A "O4'" 1
ATOM 24 C "C3'" . DG A 1 2 ? 12.097 7.400 23.839 1.00 27.72 ? 1002 DG A "C3'" 1
ATOM 25 O "O3'" . DG A 1 2 ? 11.419 8.081 22.690 1.00 26.23 ? 1002 DG A "O3'" 1
ATOM 26 C "C2'" . DG A 1 2 ? 12.774 6.106 23.257 1.00 25.07 ? 1002 DG A "C2'" 1
ATOM 27 C "C1'" . DG A 1 2 ? 13.912 6.655 22.273 1.00 30.93 ? 1002 DG A "C1'" 1
ATOM 28 N N9 . DG A 1 2 ? 15.219 5.814 22.404 1.00 20.03 ? 1002 DG A N9 1
ATOM 29 C C8 . DG A 1 2 ? 15.934 5.386 23.474 1.00 19.52 ? 1002 DG A C8 1
ATOM 30 N N7 . DG A 1 2 ? 16.998 4.686 23.159 1.00 24.15 ? 1002 DG A N7 1
ATOM 31 C C5 . DG A 1 2 ? 16.979 4.651 21.764 1.00 19.37 ? 1002 DG A C5 1
ATOM 32 C C6 . DG A 1 2 ? 17.877 4.039 20.880 1.00 15.80 ? 1002 DG A C6 1
ATOM 33 O O6 . DG A 1 2 ? 18.868 3.410 21.230 1.00 18.90 ? 1002 DG A O6 1
ATOM 34 N N1 . DG A 1 2 ? 17.551 4.207 19.536 1.00 14.03 ? 1002 DG A N1 1
ATOM 35 C C2 . DG A 1 2 ? 16.418 4.928 19.169 1.00 20.23 ? 1002 DG A C2 1
ATOM 36 N N2 . DG A 1 2 ? 16.168 5.045 17.864 1.00 20.10 ? 1002 DG A N2 1
ATOM 37 N N3 . DG A 1 2 ? 15.545 5.521 20.001 1.00 19.21 ? 1002 DG A N3 1
ATOM 38 C C4 . DG A 1 2 ? 15.884 5.344 21.282 1.00 21.01 ? 1002 DG A C4 1
ATOM 39 P P . DT A 1 3 ? 9.878 7.534 22.306 1.00 29.49 ? 1003 DT A P 1
ATOM 40 O OP1 . DT A 1 3 ? 9.088 8.735 21.864 1.00 35.24 ? 1003 DT A OP1 1
ATOM 41 O OP2 . DT A 1 3 ? 9.450 6.608 23.396 1.00 31.56 ? 1003 DT A OP2 1
ATOM 42 O "O5'" . DT A 1 3 ? 10.330 6.644 21.016 1.00 25.64 ? 1003 DT A "O5'" 1
ATOM 43 C "C5'" . DT A 1 3 ? 10.712 7.335 19.784 1.00 19.30 ? 1003 DT A "C5'" 1
ATOM 44 C "C4'" . DT A 1 3 ? 10.734 6.118 18.802 1.00 23.10 ? 1003 DT A "C4'" 1
ATOM 45 O "O4'" . DT A 1 3 ? 11.869 5.284 19.101 1.00 30.15 ? 1003 DT A "O4'" 1
ATOM 46 C "C3'" . DT A 1 3 ? 9.445 5.191 19.110 1.00 27.39 ? 1003 DT A "C3'" 1
ATOM 47 O "O3'" . DT A 1 3 ? 9.156 4.550 17.795 1.00 37.81 ? 1003 DT A "O3'" 1
ATOM 48 C "C2'" . DT A 1 3 ? 10.066 4.032 19.974 1.00 22.17 ? 1003 DT A "C2'" 1
ATOM 49 C "C1'" . DT A 1 3 ? 11.490 3.797 19.260 1.00 30.74 ? 1003 DT A "C1'" 1
ATOM 50 N N1 . DT A 1 3 ? 12.531 3.176 19.933 1.00 27.82 ? 1003 DT A N1 1
ATOM 51 C C2 . DT A 1 3 ? 13.598 2.671 19.175 1.00 23.95 ? 1003 DT A C2 1
ATOM 52 O O2 . DT A 1 3 ? 13.628 2.764 17.936 1.00 21.09 ? 1003 DT A O2 1
ATOM 53 N N3 . DT A 1 3 ? 14.573 2.081 19.927 1.00 24.08 ? 1003 DT A N3 1
ATOM 54 C C4 . DT A 1 3 ? 14.630 1.933 21.283 1.00 17.82 ? 1003 DT A C4 1
ATOM 55 O O4 . DT A 1 3 ? 15.571 1.379 21.828 1.00 28.00 ? 1003 DT A O4 1
ATOM 56 C C5 . DT A 1 3 ? 13.490 2.483 21.977 1.00 29.96 ? 1003 DT A C5 1
ATOM 57 C C7 . DT A 1 3 ? 13.423 2.389 23.487 1.00 33.69 ? 1003 DT A C7 1
ATOM 58 C C6 . DT A 1 3 ? 12.501 3.077 21.286 1.00 21.52 ? 1003 DT A C6 1
ATOM 59 P P . DA A 1 4 ? 7.712 4.547 16.984 1.00 36.53 ? 1004 DA A P 1
ATOM 60 O OP1 . DA A 1 4 ? 7.281 5.953 16.685 1.00 58.20 ? 1004 DA A OP1 1
ATOM 61 O OP2 . DA A 1 4 ? 6.781 3.568 17.677 1.00 35.45 ? 1004 DA A OP2 1
ATOM 62 O "O5'" . DA A 1 4 ? 8.253 3.858 15.607 1.00 27.64 ? 1004 DA A "O5'" 1
ATOM 63 C "C5'" . DA A 1 4 ? 9.262 4.491 14.782 1.00 26.51 ? 1004 DA A "C5'" 1
ATOM 64 C "C4'" . DA A 1 4 ? 9.920 3.322 14.017 1.00 25.90 ? 1004 DA A "C4'" 1
ATOM 65 O "O4'" . DA A 1 4 ? 10.777 2.520 14.849 1.00 22.30 ? 1004 DA A "O4'" 1
ATOM 66 C "C3'" . DA A 1 4 ? 8.830 2.336 13.395 1.00 20.57 ? 1004 DA A "C3'" 1
ATOM 67 O "O3'" . DA A 1 4 ? 9.437 1.928 12.077 1.00 16.79 ? 1004 DA A "O3'" 1
ATOM 68 C "C2'" . DA A 1 4 ? 8.935 1.073 14.318 1.00 18.42 ? 1004 DA A "C2'" 1
ATOM 69 C "C1'" . DA A 1 4 ? 10.443 1.017 14.809 1.00 18.03 ? 1004 DA A "C1'" 1
ATOM 70 N N9 . DA A 1 4 ? 10.567 0.773 16.332 1.00 15.96 ? 1004 DA A N9 1
ATOM 71 C C8 . DA A 1 4 ? 9.706 1.066 17.368 1.00 19.25 ? 1004 DA A C8 1
ATOM 72 N N7 . DA A 1 4 ? 10.207 0.678 18.554 1.00 18.78 ? 1004 DA A N7 1
ATOM 73 C C5 . DA A 1 4 ? 11.433 0.118 18.249 1.00 16.04 ? 1004 DA A C5 1
ATOM 74 C C6 . DA A 1 4 ? 12.466 -0.476 19.026 1.00 18.01 ? 1004 DA A C6 1
ATOM 75 N N6 . DA A 1 4 ? 12.336 -0.573 20.362 1.00 20.51 ? 1004 DA A N6 1
ATOM 76 N N1 . DA A 1 4 ? 13.562 -0.931 18.408 1.00 17.18 ? 1004 DA A N1 1
ATOM 77 C C2 . DA A 1 4 ? 13.645 -0.813 17.084 1.00 14.27 ? 1004 DA A C2 1
ATOM 78 N N3 . DA A 1 4 ? 12.774 -0.289 16.227 1.00 16.09 ? 1004 DA A N3 1
ATOM 79 C C4 . DA A 1 4 ? 11.675 0.168 16.886 1.00 22.49 ? 1004 DA A C4 1
ATOM 80 P P . DC A 1 5 ? 8.628 0.802 11.181 1.00 19.65 ? 1005 DC A P 1
ATOM 81 O OP1 . DC A 1 5 ? 9.015 1.021 9.731 1.00 20.21 ? 1005 DC A OP1 1
ATOM 82 O OP2 . DC A 1 5 ? 7.181 0.760 11.637 1.00 22.76 ? 1005 DC A OP2 1
ATOM 83 O "O5'" . DC A 1 5 ? 9.323 -0.572 11.694 1.00 18.59 ? 1005 DC A "O5'" 1
ATOM 84 C "C5'" . DC A 1 5 ? 10.720 -0.803 11.351 1.00 17.77 ? 1005 DC A "C5'" 1
ATOM 85 C "C4'" . DC A 1 5 ? 11.076 -2.152 12.010 1.00 17.27 ? 1005 DC A "C4'" 1
ATOM 86 O "O4'" . DC A 1 5 ? 11.070 -2.070 13.465 1.00 17.42 ? 1005 DC A "O4'" 1
ATOM 87 C "C3'" . DC A 1 5 ? 9.955 -3.250 11.628 1.00 18.18 ? 1005 DC A "C3'" 1
ATOM 88 O "O3'" . DC A 1 5 ? 10.748 -4.476 11.395 1.00 17.17 ? 1005 DC A "O3'" 1
ATOM 89 C "C2'" . DC A 1 5 ? 9.242 -3.524 13.000 1.00 17.25 ? 1005 DC A "C2'" 1
ATOM 90 C "C1'" . DC A 1 5 ? 10.376 -3.229 14.096 1.00 17.59 ? 1005 DC A "C1'" 1
ATOM 91 N N1 . DC A 1 5 ? 10.047 -3.033 15.431 1.00 16.99 ? 1005 DC A N1 1
ATOM 92 C C2 . DC A 1 5 ? 10.977 -3.433 16.377 1.00 17.87 ? 1005 DC A C2 1
ATOM 93 O O2 . DC A 1 5 ? 12.076 -3.947 16.011 1.00 16.46 ? 1005 DC A O2 1
ATOM 94 N N3 . DC A 1 5 ? 10.695 -3.270 17.710 1.00 18.01 ? 1005 DC A N3 1
ATOM 95 C C4 . DC A 1 5 ? 9.508 -2.711 18.041 1.00 16.97 ? 1005 DC A C4 1
ATOM 96 N N4 . DC A 1 5 ? 9.249 -2.553 19.331 1.00 15.73 ? 1005 DC A N4 1
ATOM 97 C C5 . DC A 1 5 ? 8.542 -2.300 17.068 1.00 16.51 ? 1005 DC A C5 1
ATOM 98 C C6 . DC A 1 5 ? 8.841 -2.470 15.763 1.00 17.19 ? 1005 DC A C6 1
ATOM 99 P P . DG A 1 6 ? 10.169 -5.530 10.236 1.00 21.00 ? 1006 DG A P 1
ATOM 100 O OP1 . DG A 1 6 ? 10.766 -5.169 8.864 1.00 24.37 ? 1006 DG A OP1 1
ATOM 101 O OP2 . DG A 1 6 ? 8.695 -5.528 10.354 1.00 18.37 ? 1006 DG A OP2 1
ATOM 102 O "O5'" . DG A 1 6 ? 10.925 -6.839 10.749 1.00 20.21 ? 1006 DG A "O5'" 1
ATOM 103 C "C5'" . DG A 1 6 ? 10.504 -7.157 12.089 1.00 20.02 ? 1006 DG A "C5'" 1
ATOM 104 C "C4'" . DG A 1 6 ? 10.982 -8.637 12.210 1.00 28.62 ? 1006 DG A "C4'" 1
ATOM 105 O "O4'" . DG A 1 6 ? 10.562 -9.100 13.522 1.00 21.06 ? 1006 DG A "O4'" 1
ATOM 106 C "C3'" . DG A 1 6 ? 10.152 -9.517 11.134 1.00 22.23 ? 1006 DG A "C3'" 1
ATOM 107 O "O3'" . DG A 1 6 ? 10.966 -10.754 11.017 1.00 24.76 ? 1006 DG A "O3'" 1
ATOM 108 C "C2'" . DG A 1 6 ? 8.913 -9.949 11.998 1.00 22.90 ? 1006 DG A "C2'" 1
ATOM 109 C "C1'" . DG A 1 6 ? 9.540 -10.211 13.444 1.00 27.02 ? 1006 DG A "C1'" 1
ATOM 110 N N9 . DG A 1 6 ? 8.546 -9.737 14.543 1.00 18.50 ? 1006 DG A N9 1
ATOM 111 C C8 . DG A 1 6 ? 7.329 -9.132 14.462 1.00 22.94 ? 1006 DG A C8 1
ATOM 112 N N7 . DG A 1 6 ? 6.826 -8.903 15.664 1.00 22.32 ? 1006 DG A N7 1
ATOM 113 C C5 . DG A 1 6 ? 7.767 -9.386 16.527 1.00 17.96 ? 1006 DG A C5 1
ATOM 114 C C6 . DG A 1 6 ? 7.808 -9.431 17.951 1.00 16.51 ? 1006 DG A C6 1
ATOM 115 O O6 . DG A 1 6 ? 6.895 -8.991 18.681 1.00 19.41 ? 1006 DG A O6 1
ATOM 116 N N1 . DG A 1 6 ? 8.963 -10.011 18.442 1.00 16.81 ? 1006 DG A N1 1
ATOM 117 C C2 . DG A 1 6 ? 10.004 -10.518 17.705 1.00 13.00 ? 1006 DG A C2 1
ATOM 118 N N2 . DG A 1 6 ? 11.031 -11.040 18.410 1.00 15.17 ? 1006 DG A N2 1
ATOM 119 N N3 . DG A 1 6 ? 9.973 -10.478 16.380 1.00 14.58 ? 1006 DG A N3 1
ATOM 120 C C4 . DG A 1 6 ? 8.863 -9.917 15.872 1.00 18.42 ? 1006 DG A C4 1
HETATM 121 C C1 . 9AD B 2 . ? 17.443 8.276 20.142 1.00 19.40 ? 3014 9AD A C1 1
HETATM 122 C C2 . 9AD B 2 . ? 17.407 8.246 21.529 1.00 19.63 ? 3014 9AD A C2 1
HETATM 123 C C3 . 9AD B 2 . ? 18.402 7.593 22.199 1.00 20.88 ? 3014 9AD A C3 1
HETATM 124 C C4 . 9AD B 2 . ? 19.465 6.920 21.566 1.00 21.90 ? 3014 9AD A C4 1
HETATM 125 C C5 . 9AD B 2 . ? 21.757 5.869 17.549 1.00 20.15 ? 3014 9AD A C5 1
HETATM 126 C C6 . 9AD B 2 . ? 21.874 5.924 16.158 1.00 17.74 ? 3014 9AD A C6 1
HETATM 127 C C7 . 9AD B 2 . ? 20.928 6.600 15.392 1.00 19.72 ? 3014 9AD A C7 1
HETATM 128 C C8 . 9AD B 2 . ? 19.735 7.002 15.963 1.00 20.86 ? 3014 9AD A C8 1
HETATM 129 C C9 . 9AD B 2 . ? 18.514 7.617 18.021 1.00 22.06 ? 3014 9AD A C9 1
HETATM 130 N N10 . 9AD B 2 . ? 20.524 6.351 19.498 1.00 20.30 ? 3014 9AD A N10 1
HETATM 131 C C11 . 9AD B 2 . ? 18.469 7.615 19.443 1.00 18.97 ? 3014 9AD A C11 1
HETATM 132 C C12 . 9AD B 2 . ? 19.596 7.033 20.150 1.00 22.66 ? 3014 9AD A C12 1
HETATM 133 C C13 . 9AD B 2 . ? 19.605 6.996 17.378 1.00 22.14 ? 3014 9AD A C13 1
HETATM 134 C C14 . 9AD B 2 . ? 20.632 6.392 18.183 1.00 23.34 ? 3014 9AD A C14 1
HETATM 135 N N9 . 9AD B 2 . ? 17.479 8.129 17.322 1.00 22.22 ? 3014 9AD A N9 1
HETATM 136 C CD1 . 9AD B 2 . ? 20.419 6.101 22.461 1.00 27.00 ? 3014 9AD A CD1 1
HETATM 137 O OD1 . 9AD B 2 . ? 21.445 5.664 21.945 1.00 27.80 ? 3014 9AD A OD1 1
HETATM 138 N ND1 . 9AD B 2 . ? 20.057 5.969 23.762 1.00 36.98 ? 3014 9AD A ND1 1
HETATM 139 N ND2 . 9AD B 2 . ? 19.440 3.184 24.231 1.00 61.88 ? 3014 9AD A ND2 1
HETATM 140 C CD2 . 9AD B 2 . ? 20.830 5.218 24.764 1.00 43.09 ? 3014 9AD A CD2 1
HETATM 141 C CD3 . 9AD B 2 . ? 20.833 3.711 24.438 1.00 50.22 ? 3014 9AD A CD3 1
HETATM 142 C CD7 . 9AD B 2 . ? 19.468 1.759 23.802 1.00 38.09 ? 3014 9AD A CD7 1
HETATM 143 C CD8 . 9AD B 2 . ? 18.545 3.434 25.400 1.00 56.88 ? 3014 9AD A CD8 1
HETATM 144 C C1 A 9AD C 2 . ? 8.816 -13.683 17.339 0.50 11.98 ? 3015 9AD A C1 1
HETATM 145 C C2 A 9AD C 2 . ? 8.100 -13.269 16.238 0.50 16.71 ? 3015 9AD A C2 1
HETATM 146 C C3 A 9AD C 2 . ? 6.867 -12.659 16.354 0.50 20.34 ? 3015 9AD A C3 1
HETATM 147 C C4 A 9AD C 2 . ? 6.238 -12.456 17.598 0.50 23.89 ? 3015 9AD A C4 1
HETATM 148 C C5 A 9AD C 2 . ? 6.521 -12.464 22.253 0.50 10.95 ? 3015 9AD A C5 1
HETATM 149 C C6 A 9AD C 2 . ? 7.046 -12.934 23.454 0.50 23.55 ? 3015 9AD A C6 1
HETATM 150 C C7 A 9AD C 2 . ? 8.361 -13.405 23.492 0.50 15.06 ? 3015 9AD A C7 1
HETATM 151 C C8 A 9AD C 2 . ? 8.973 -13.826 22.317 0.50 15.21 ? 3015 9AD A C8 1
HETATM 152 C C9 A 9AD C 2 . ? 8.970 -13.887 19.822 0.50 12.49 ? 3015 9AD A C9 1
HETATM 153 N N10 A 9AD C 2 . ? 6.464 -12.668 19.947 0.50 16.90 ? 3015 9AD A N10 1
HETATM 154 C C11 A 9AD C 2 . ? 8.281 -13.508 18.633 0.50 14.54 ? 3015 9AD A C11 1
HETATM 155 C C12 A 9AD C 2 . ? 7.038 -12.764 18.755 0.50 20.45 ? 3015 9AD A C12 1
HETATM 156 C C13 A 9AD C 2 . ? 8.388 -13.544 21.069 0.50 16.88 ? 3015 9AD A C13 1
HETATM 157 C C14 A 9AD C 2 . ? 7.115 -12.877 21.059 0.50 13.19 ? 3015 9AD A C14 1
HETATM 158 N N9 A 9AD C 2 . ? 10.206 -14.443 19.824 0.50 15.05 ? 3015 9AD A N9 1
HETATM 159 C CD1 A 9AD C 2 . ? 4.912 -11.658 17.688 0.50 30.44 ? 3015 9AD A CD1 1
HETATM 160 O OD1 A 9AD C 2 . ? 4.276 -11.581 18.751 0.50 26.21 ? 3015 9AD A OD1 1
HETATM 161 N ND1 A 9AD C 2 . ? 4.414 -10.969 16.633 0.50 35.92 ? 3015 9AD A ND1 1
HETATM 162 N ND2 A 9AD C 2 . ? 4.236 -8.150 15.767 0.50 24.34 ? 3015 9AD A ND2 1
HETATM 163 C CD2 A 9AD C 2 . ? 3.120 -10.266 16.690 0.50 33.06 ? 3015 9AD A CD2 1
HETATM 164 C CD3 A 9AD C 2 . ? 3.280 -8.735 16.769 0.50 23.25 ? 3015 9AD A CD3 1
HETATM 165 C CD7 A 9AD C 2 . ? 3.597 -8.088 14.415 0.50 25.86 ? 3015 9AD A CD7 1
HETATM 166 C CD8 A 9AD C 2 . ? 4.743 -6.806 16.173 0.50 35.01 ? 3015 9AD A CD8 1
HETATM 167 O O . HOH D 3 . ? 11.933 9.823 28.426 1.00 23.95 ? 4001 HOH A O 1
HETATM 168 O O . HOH D 3 . ? 16.346 11.697 21.100 1.00 23.11 ? 4002 HOH A O 1
HETATM 169 O O . HOH D 3 . ? 14.423 9.902 20.900 1.00 31.87 ? 4003 HOH A O 1
HETATM 170 O O . HOH D 3 . ? 17.427 8.911 29.958 1.00 29.77 ? 4004 HOH A O 1
HETATM 171 O O . HOH D 3 . ? 12.325 -12.671 12.883 1.00 26.42 ? 4005 HOH A O 1
HETATM 172 O O . HOH D 3 . ? 9.962 11.029 21.897 1.00 41.78 ? 4006 HOH A O 1
HETATM 173 O O . HOH D 3 . ? 19.953 9.011 29.474 1.00 31.81 ? 4007 HOH A O 1
HETATM 174 O O . HOH D 3 . ? 9.520 0.502 21.126 1.00 34.63 ? 4008 HOH A O 1
HETATM 175 O O . HOH D 3 . ? 6.944 -3.587 9.566 1.00 34.69 ? 4009 HOH A O 1
HETATM 176 O O . HOH D 3 . ? 24.305 5.054 21.448 1.00 31.71 ? 4010 HOH A O 1
HETATM 177 O O . HOH D 3 . ? 7.158 -6.540 12.266 1.00 35.07 ? 4011 HOH A O 1
HETATM 178 O O . HOH D 3 . ? 5.596 -5.409 13.542 1.00 42.65 ? 4012 HOH A O 1
HETATM 179 O O . HOH D 3 . ? 10.148 -14.224 13.564 1.00 34.07 ? 4013 HOH A O 1
HETATM 180 O O . HOH D 3 . ? 6.879 -1.428 20.172 1.00 32.57 ? 4014 HOH A O 1
HETATM 181 O O . HOH D 3 . ? 11.877 -15.217 21.573 1.00 27.22 ? 4015 HOH A O 1
HETATM 182 O O . HOH D 3 . ? 8.651 -1.035 7.963 1.00 22.30 ? 4016 HOH A O 1
HETATM 183 O O . HOH D 3 . ? 6.321 1.017 17.074 1.00 50.20 ? 4017 HOH A O 1
HETATM 184 O O . HOH D 3 . ? 16.461 8.420 31.985 1.00 31.17 ? 4018 HOH A O 1
HETATM 185 O O . HOH D 3 . ? 14.130 4.675 26.332 1.00 31.36 ? 4019 HOH A O 1
HETATM 186 O O . HOH D 3 . ? 14.718 6.888 28.147 1.00 39.58 ? 4020 HOH A O 1
HETATM 187 O O . HOH D 3 . ? 22.838 11.671 26.897 1.00 14.72 ? 4021 HOH A O 1
HETATM 188 O O . HOH D 3 . ? 11.931 10.748 20.237 1.00 43.23 ? 4022 HOH A O 1
HETATM 189 O O . HOH D 3 . ? 11.122 10.446 17.947 1.00 43.97 ? 4023 HOH A O 1
HETATM 190 O O . HOH D 3 . ? 18.422 7.279 25.706 1.00 28.17 ? 4024 HOH A O 1
HETATM 191 O O . HOH D 3 . ? 7.540 -13.060 12.454 0.50 31.63 ? 4025 HOH A O 1
HETATM 192 O O . HOH D 3 . ? 16.394 12.296 18.040 1.00 45.97 ? 4026 HOH A O 1
HETATM 193 O O . HOH D 3 . ? 6.170 -0.972 13.627 1.00 52.79 ? 4027 HOH A O 1
HETATM 194 O O . HOH D 3 . ? 26.934 4.133 20.691 1.00 56.74 ? 4028 HOH A O 1
HETATM 195 O O . HOH D 3 . ? 7.540 -13.060 10.201 0.50 57.41 ? 4029 HOH A O 1
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