data_3UM4
#
_entry.id 3UM4
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.389
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3UM4 pdb_00003um4 10.2210/pdb3um4/pdb
NDB NA1495 ? ?
RCSB RCSB068925 ? ?
WWPDB D_1000068925 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-07-25
2 'Structure model' 1 1 2024-03-20
3 'Structure model' 1 2 2024-04-03
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Data collection'
2 2 'Structure model' 'Database references'
3 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' chem_comp_atom
2 2 'Structure model' chem_comp_bond
3 2 'Structure model' database_2
4 3 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_database_2.pdbx_DOI'
2 2 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3UM4
_pdbx_database_status.recvd_initial_deposition_date 2011-11-12
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3ULM 'The 3ULM structure is of stage (ii) in the ring crystal formation seen in oligonucleotide.' unspecified
PDB 3ULN 'The 3ULN structure is of stage (iii) in the ring crystal formation seen in oligonucleotide.' unspecified
PDB 3ULO 'The 3ULO structure is of stage (iv) in the ring crystal formation seen in oligonucleotide.' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Mandal, P.K.' 1
'Venkadesh, S.' 2
'Gautham, N.' 3
#
_citation.id primary
_citation.title 'Ring crystals of oligonucleotides: Growth stages and X-ray diffraction studies'
_citation.journal_abbrev J.Cryst.Growth
_citation.journal_volume 354
_citation.page_first 20
_citation.page_last 26
_citation.year 2012
_citation.journal_id_ASTM JCRGAE
_citation.country NE
_citation.journal_id_ISSN 0022-0248
_citation.journal_id_CSD 0229
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI 10.1016/j.jcrysgro.2012.05.029
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Mandal, P.K.' 1 ?
primary 'Chandrasekaran, A.R.' 2 ?
primary 'Madhanagopal, B.R.' 3 ?
primary 'Venkadesh, S.' 4 ?
primary 'Gautham, N.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn '6-mer DNA' 1221.840 2 ? ? ? ?
2 water nat water 18.015 3 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DT)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can TGTG
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DG n
1 3 DT n
1 4 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Chemically synthesized by M/s Microsynth'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT DT A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DT 3 3 3 DT DT A . n
A 1 4 DG 4 4 4 DG DG A . n
B 1 1 DT 1 5 5 DT DT B . n
B 1 2 DG 2 6 6 DG DG B . n
B 1 3 DT 3 7 7 DT DT B . n
B 1 4 DG 4 8 8 DG DG B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HOH 1 101 1 HOH HOH A .
C 2 HOH 2 102 3 HOH HOH A .
D 2 HOH 1 101 2 HOH HOH B .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MAR345dtb 'data collection' . ? 1
PHASER phasing . ? 2
REFMAC refinement 5.2.0019 ? 3
AUTOMAR 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 3UM4
_cell.length_a 17.693
_cell.length_b 17.693
_cell.length_c 42.495
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3UM4
_symmetry.space_group_name_H-M 'P 32'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 145
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3UM4
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.5715
_exptl_crystal.density_percent_sol 21.7286
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7
_exptl_crystal_grow.pdbx_details
;1mM DNA, 75mM sodium cacodylate trihydrate buffer (pH 7.0), 0.5mM cobalt hexammine chloride, 0.75mM spermine, equilibrated against 50% methyl pentane diol (MPD), VAPOR DIFFUSION, HANGING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'MAR scanner 345 mm plate'
_diffrn_detector.pdbx_collection_date 2009-10-01
_diffrn_detector.details mirror
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator Graphite
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.54
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'BRUKER AXS MICROSTAR'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.54
#
_reflns.entry_id 3UM4
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 20
_reflns.d_resolution_high 2.81
_reflns.number_obs 343
_reflns.number_all 367
_reflns.percent_possible_obs 93
_reflns.pdbx_Rmerge_I_obs 0.0657
_reflns.pdbx_Rsym_value 0.0459
_reflns.pdbx_netI_over_sigmaI 7.5
_reflns.B_iso_Wilson_estimate 41.7
_reflns.pdbx_redundancy 3.22
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.81
_reflns_shell.d_res_low 2.91
_reflns_shell.percent_possible_all 93.9
_reflns_shell.Rmerge_I_obs 0.3486
_reflns_shell.pdbx_Rsym_value 0.2535
_reflns_shell.meanI_over_sigI_obs 1.4
_reflns_shell.pdbx_redundancy 2.93
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 46
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.number_possible ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 3UM4
_refine.ls_number_reflns_obs 316
_refine.ls_number_reflns_all 346
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 15.32
_refine.ls_d_res_high 2.82
_refine.ls_percent_reflns_obs 91.46
_refine.ls_R_factor_obs 0.24171
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.24083
_refine.ls_R_factor_R_free 0.26195
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.8
_refine.ls_number_reflns_R_free 16
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.948
_refine.correlation_coeff_Fo_to_Fc_free 0.943
_refine.B_iso_mean 27.8454
_refine.aniso_B[1][1] -0.0900
_refine.aniso_B[2][2] -0.0900
_refine.aniso_B[3][3] 0.1400
_refine.aniso_B[1][2] -0.0500
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details
;THE DNA OLIGONUCLEOTIDE HAS SIX BASE PAIRS (D(CACGCG).D(CGCGTG)) AND FORMS THE Z-TYPE DOUBLE HELICAL STRUCTURE. THE STRUCTURE HAS STATISTICAL DIS-ORDER AND THE ASYMMETRIC UNIT CONTAINS A TETRAMERIC DUPLEX WHICH COULD STAND FOR EITHER CPGPCPG/CPGPCPG OR CPAPCPG/CPGPTPG OR CPGPCPA/TPGPCPG. DUE TO DISORDER, THE TETRANUCLEOTIDE WAS CONSTRUCTED AS TPGPTPG/TPGPTPG IN WHICH THE C5 METHYL GROUP OF THYMINE WAS ASSIGNED OCCUPANCY OF 1/6 AND N2 OF GUANINE WAS ASSIGNED OCCUPANCY OF 5/6.
;
_refine.pdbx_starting_model 'Z-type DNA tetranucleotide built using InsightII'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R_Free 0.564
_refine.overall_SU_ML 0.417
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 22.2130
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 165
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 3
_refine_hist.number_atoms_total 168
_refine_hist.d_res_high 2.82
_refine_hist.d_res_low 15.32
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 0.016 0.021 ? 183 ? 'X-RAY DIFFRACTION'
r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 2.391 3.000 ? 280 ? 'X-RAY DIFFRACTION'
r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_chiral_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 0.007 0.020 ? 88 ? 'X-RAY DIFFRACTION'
r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbd_refined 0.299 0.200 ? 79 ? 'X-RAY DIFFRACTION'
r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_refined 0.303 0.200 ? 87 ? 'X-RAY DIFFRACTION'
r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_refined 0.277 0.200 ? 3 ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_refined 0.347 0.200 ? 22 ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_refined 0.511 0.200 ? 1 ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 2.822
_refine_ls_shell.d_res_low 2.893
_refine_ls_shell.number_reflns_R_work 31
_refine_ls_shell.R_factor_R_work 0.390
_refine_ls_shell.percent_reflns_obs 89.19
_refine_ls_shell.R_factor_R_free 0.155
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 2
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 31
_refine_ls_shell.redundancy_reflns_obs ?
#
_database_PDB_matrix.entry_id 3UM4
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 3UM4
_struct.title
'X-ray Diffraction Studies of Ring Crystals obtained for d(CACGCG).d(CGCGTG): Stage (i) Hexagonal plates'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag N
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3UM4
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Z-type DNA double helix, ring crystal, crystal morphology, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3UM4
_struct_ref.pdbx_db_accession 3UM4
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3UM4 A 1 ? 4 ? 3UM4 1 ? 4 ? 1 4
2 1 3UM4 B 1 ? 4 ? 3UM4 5 ? 8 ? 5 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 470 ?
1 MORE -10 ?
1 'SSA (A^2)' 1720 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DT 1 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DT 1 B DG 8 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ?
hydrog2 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DT 3 O4 ? ? A DG 2 B DT 7 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ?
hydrog3 hydrog ? ? A DT 3 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DT 3 B DG 6 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ?
hydrog4 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DT 1 O4 ? ? A DG 4 B DT 5 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.71 108.30 4.41 0.30 N
2 1 N1 A DT 1 ? ? C2 A DT 1 ? ? N3 A DT 1 ? ? 118.80 114.60 4.20 0.60 N
3 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 112.04 108.30 3.74 0.30 N
4 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 111.21 108.30 2.91 0.30 N
5 1 N3 B DT 5 ? ? C2 B DT 5 ? ? O2 B DT 5 ? ? 118.45 122.30 -3.85 0.60 N
6 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.77 108.30 2.47 0.30 N
7 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 123.80 128.60 -4.80 0.60 N
#
_pdbx_entry_details.entry_id 3UM4
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details 'THE ACTUAL DNA SEQUENCE FOR THE THIS STUDY IS D(CACGCG).(CGCGTG)'
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DG OP3 O N N 1
DG P P N N 2
DG OP1 O N N 3
DG OP2 O N N 4
DG "O5'" O N N 5
DG "C5'" C N N 6
DG "C4'" C N R 7
DG "O4'" O N N 8
DG "C3'" C N S 9
DG "O3'" O N N 10
DG "C2'" C N N 11
DG "C1'" C N R 12
DG N9 N Y N 13
DG C8 C Y N 14
DG N7 N Y N 15
DG C5 C Y N 16
DG C6 C N N 17
DG O6 O N N 18
DG N1 N N N 19
DG C2 C N N 20
DG N2 N N N 21
DG N3 N N N 22
DG C4 C Y N 23
DG HOP3 H N N 24
DG HOP2 H N N 25
DG "H5'" H N N 26
DG "H5''" H N N 27
DG "H4'" H N N 28
DG "H3'" H N N 29
DG "HO3'" H N N 30
DG "H2'" H N N 31
DG "H2''" H N N 32
DG "H1'" H N N 33
DG H8 H N N 34
DG H1 H N N 35
DG H21 H N N 36
DG H22 H N N 37
DT OP3 O N N 38
DT P P N N 39
DT OP1 O N N 40
DT OP2 O N N 41
DT "O5'" O N N 42
DT "C5'" C N N 43
DT "C4'" C N R 44
DT "O4'" O N N 45
DT "C3'" C N S 46
DT "O3'" O N N 47
DT "C2'" C N N 48
DT "C1'" C N R 49
DT N1 N N N 50
DT C2 C N N 51
DT O2 O N N 52
DT N3 N N N 53
DT C4 C N N 54
DT O4 O N N 55
DT C5 C N N 56
DT C7 C N N 57
DT C6 C N N 58
DT HOP3 H N N 59
DT HOP2 H N N 60
DT "H5'" H N N 61
DT "H5''" H N N 62
DT "H4'" H N N 63
DT "H3'" H N N 64
DT "HO3'" H N N 65
DT "H2'" H N N 66
DT "H2''" H N N 67
DT "H1'" H N N 68
DT H3 H N N 69
DT H71 H N N 70
DT H72 H N N 71
DT H73 H N N 72
DT H6 H N N 73
HOH O O N N 74
HOH H1 H N N 75
HOH H2 H N N 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DG OP3 P sing N N 1
DG OP3 HOP3 sing N N 2
DG P OP1 doub N N 3
DG P OP2 sing N N 4
DG P "O5'" sing N N 5
DG OP2 HOP2 sing N N 6
DG "O5'" "C5'" sing N N 7
DG "C5'" "C4'" sing N N 8
DG "C5'" "H5'" sing N N 9
DG "C5'" "H5''" sing N N 10
DG "C4'" "O4'" sing N N 11
DG "C4'" "C3'" sing N N 12
DG "C4'" "H4'" sing N N 13
DG "O4'" "C1'" sing N N 14
DG "C3'" "O3'" sing N N 15
DG "C3'" "C2'" sing N N 16
DG "C3'" "H3'" sing N N 17
DG "O3'" "HO3'" sing N N 18
DG "C2'" "C1'" sing N N 19
DG "C2'" "H2'" sing N N 20
DG "C2'" "H2''" sing N N 21
DG "C1'" N9 sing N N 22
DG "C1'" "H1'" sing N N 23
DG N9 C8 sing Y N 24
DG N9 C4 sing Y N 25
DG C8 N7 doub Y N 26
DG C8 H8 sing N N 27
DG N7 C5 sing Y N 28
DG C5 C6 sing N N 29
DG C5 C4 doub Y N 30
DG C6 O6 doub N N 31
DG C6 N1 sing N N 32
DG N1 C2 sing N N 33
DG N1 H1 sing N N 34
DG C2 N2 sing N N 35
DG C2 N3 doub N N 36
DG N2 H21 sing N N 37
DG N2 H22 sing N N 38
DG N3 C4 sing N N 39
DT OP3 P sing N N 40
DT OP3 HOP3 sing N N 41
DT P OP1 doub N N 42
DT P OP2 sing N N 43
DT P "O5'" sing N N 44
DT OP2 HOP2 sing N N 45
DT "O5'" "C5'" sing N N 46
DT "C5'" "C4'" sing N N 47
DT "C5'" "H5'" sing N N 48
DT "C5'" "H5''" sing N N 49
DT "C4'" "O4'" sing N N 50
DT "C4'" "C3'" sing N N 51
DT "C4'" "H4'" sing N N 52
DT "O4'" "C1'" sing N N 53
DT "C3'" "O3'" sing N N 54
DT "C3'" "C2'" sing N N 55
DT "C3'" "H3'" sing N N 56
DT "O3'" "HO3'" sing N N 57
DT "C2'" "C1'" sing N N 58
DT "C2'" "H2'" sing N N 59
DT "C2'" "H2''" sing N N 60
DT "C1'" N1 sing N N 61
DT "C1'" "H1'" sing N N 62
DT N1 C2 sing N N 63
DT N1 C6 sing N N 64
DT C2 O2 doub N N 65
DT C2 N3 sing N N 66
DT N3 C4 sing N N 67
DT N3 H3 sing N N 68
DT C4 O4 doub N N 69
DT C4 C5 sing N N 70
DT C5 C7 sing N N 71
DT C5 C6 doub N N 72
DT C7 H71 sing N N 73
DT C7 H72 sing N N 74
DT C7 H73 sing N N 75
DT C6 H6 sing N N 76
HOH O H1 sing N N 77
HOH O H2 sing N N 78
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3UM4 'z-form double helix'
3UM4 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 B DG 4 1_555 2.256 -0.151 1.149 -27.327 2.445 6.772 1 A_DT1:DG8_B A 1 ? B 8 ? ? 1
1 A DG 2 1_555 B DT 3 1_555 -1.105 -0.638 -0.302 -4.978 10.245 4.893 2 A_DG2:DT7_B A 2 ? B 7 ? ? 1
1 A DT 3 1_555 B DG 2 1_555 0.192 -0.101 0.816 -6.676 -2.708 8.513 3 A_DT3:DG6_B A 3 ? B 6 ? ? ?
1 A DG 4 1_555 B DT 1 1_555 -0.582 -0.336 -0.440 -23.527 8.277 16.455 4 A_DG4:DT5_B A 4 ? B 5 ? ? 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 B DG 4 1_555 A DG 2 1_555 B DT 3 1_555 0.929 6.295 3.105 8.351 18.940 -36.758 -9.724 1.712 -0.187 -27.523
12.136 -42.009 1 AA_DT1DG2:DT7DG8_BB A 1 ? B 8 ? A 2 ? B 7 ?
1 A DG 2 1_555 B DT 3 1_555 A DT 3 1_555 B DG 2 1_555 0.033 -2.057 3.482 -4.097 -1.669 -33.619 3.809 -0.635 3.360 2.870
-7.046 -33.901 2 AA_DG2DT3:DG6DT7_BB A 2 ? B 7 ? A 3 ? B 6 ?
1 A DT 3 1_555 B DG 2 1_555 A DG 4 1_555 B DT 1 1_555 0.371 4.903 4.155 5.895 -1.791 -19.534 -12.742 4.507 4.285 5.115
16.842 -20.474 3 AA_DT3DG4:DT5DG6_BB A 3 ? B 6 ? A 4 ? B 5 ?
#
_pdbx_initial_refinement_model.accession_code ?
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'in silico model'
_pdbx_initial_refinement_model.source_name InsightII
_pdbx_initial_refinement_model.details 'Z-type DNA tetranucleotide built using InsightII'
#
_atom_sites.entry_id 3UM4
_atom_sites.fract_transf_matrix[1][1] 0.056520
_atom_sites.fract_transf_matrix[1][2] 0.032632
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.065263
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.023532
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 P P . DT A 1 1 ? 1.005 -7.578 -1.349 0.50 32.74 ? 1 DT A P 1
ATOM 2 O OP1 . DT A 1 1 ? 1.802 -6.521 -2.027 0.50 30.04 ? 1 DT A OP1 1
ATOM 3 O OP2 . DT A 1 1 ? -0.180 -8.135 -2.062 0.50 33.62 ? 1 DT A OP2 1
ATOM 4 O "O5'" . DT A 1 1 ? 1.875 -8.849 -0.852 1.00 31.63 ? 1 DT A "O5'" 1
ATOM 5 C "C5'" . DT A 1 1 ? 3.102 -8.712 -0.171 1.00 30.01 ? 1 DT A "C5'" 1
ATOM 6 C "C4'" . DT A 1 1 ? 4.281 -8.555 -1.123 1.00 28.87 ? 1 DT A "C4'" 1
ATOM 7 O "O4'" . DT A 1 1 ? 4.281 -7.292 -1.852 1.00 29.04 ? 1 DT A "O4'" 1
ATOM 8 C "C3'" . DT A 1 1 ? 5.604 -8.563 -0.387 1.00 28.65 ? 1 DT A "C3'" 1
ATOM 9 O "O3'" . DT A 1 1 ? 6.482 -9.263 -1.210 1.00 31.40 ? 1 DT A "O3'" 1
ATOM 10 C "C2'" . DT A 1 1 ? 5.955 -7.086 -0.224 1.00 27.35 ? 1 DT A "C2'" 1
ATOM 11 C "C1'" . DT A 1 1 ? 5.445 -6.512 -1.522 1.00 25.53 ? 1 DT A "C1'" 1
ATOM 12 N N1 . DT A 1 1 ? 5.184 -5.020 -1.576 1.00 24.61 ? 1 DT A N1 1
ATOM 13 C C2 . DT A 1 1 ? 6.205 -4.290 -2.096 1.00 24.66 ? 1 DT A C2 1
ATOM 14 O O2 . DT A 1 1 ? 7.222 -4.806 -2.429 1.00 28.82 ? 1 DT A O2 1
ATOM 15 N N3 . DT A 1 1 ? 6.049 -2.948 -2.227 1.00 25.79 ? 1 DT A N3 1
ATOM 16 C C4 . DT A 1 1 ? 4.938 -2.221 -1.857 1.00 28.15 ? 1 DT A C4 1
ATOM 17 O O4 . DT A 1 1 ? 4.953 -0.979 -2.020 1.00 27.98 ? 1 DT A O4 1
ATOM 18 C C5 . DT A 1 1 ? 3.838 -3.045 -1.299 1.00 26.83 ? 1 DT A C5 1
ATOM 19 C C7 . DT A 1 1 ? 2.546 -2.408 -0.876 0.17 26.19 ? 1 DT A C7 1
ATOM 20 C C6 . DT A 1 1 ? 4.008 -4.390 -1.191 1.00 25.24 ? 1 DT A C6 1
ATOM 21 P P . DG A 1 2 ? 7.585 -10.241 -0.580 1.00 33.40 ? 2 DG A P 1
ATOM 22 O OP1 . DG A 1 2 ? 7.039 -10.615 0.757 1.00 34.83 ? 2 DG A OP1 1
ATOM 23 O OP2 . DG A 1 2 ? 8.935 -9.617 -0.649 1.00 34.42 ? 2 DG A OP2 1
ATOM 24 O "O5'" . DG A 1 2 ? 7.588 -11.461 -1.616 1.00 28.77 ? 2 DG A "O5'" 1
ATOM 25 C "C5'" . DG A 1 2 ? 7.927 -11.258 -2.970 1.00 26.97 ? 2 DG A "C5'" 1
ATOM 26 C "C4'" . DG A 1 2 ? 6.939 -12.076 -3.757 1.00 26.39 ? 2 DG A "C4'" 1
ATOM 27 O "O4'" . DG A 1 2 ? 5.677 -11.405 -3.665 1.00 24.00 ? 2 DG A "O4'" 1
ATOM 28 C "C3'" . DG A 1 2 ? 7.243 -12.179 -5.235 1.00 27.41 ? 2 DG A "C3'" 1
ATOM 29 O "O3'" . DG A 1 2 ? 7.960 -13.392 -5.468 1.00 28.59 ? 2 DG A "O3'" 1
ATOM 30 C "C2'" . DG A 1 2 ? 5.877 -12.118 -5.922 1.00 27.63 ? 2 DG A "C2'" 1
ATOM 31 C "C1'" . DG A 1 2 ? 4.901 -11.743 -4.804 1.00 27.61 ? 2 DG A "C1'" 1
ATOM 32 N N9 . DG A 1 2 ? 3.965 -10.630 -5.087 1.00 29.57 ? 2 DG A N9 1
ATOM 33 C C8 . DG A 1 2 ? 2.616 -10.684 -5.374 1.00 29.76 ? 2 DG A C8 1
ATOM 34 N N7 . DG A 1 2 ? 2.062 -9.506 -5.569 1.00 30.53 ? 2 DG A N7 1
ATOM 35 C C5 . DG A 1 2 ? 3.090 -8.590 -5.384 1.00 30.62 ? 2 DG A C5 1
ATOM 36 C C6 . DG A 1 2 ? 3.114 -7.161 -5.456 1.00 31.44 ? 2 DG A C6 1
ATOM 37 O O6 . DG A 1 2 ? 2.191 -6.367 -5.711 1.00 33.39 ? 2 DG A O6 1
ATOM 38 N N1 . DG A 1 2 ? 4.392 -6.645 -5.208 1.00 31.26 ? 2 DG A N1 1
ATOM 39 C C2 . DG A 1 2 ? 5.518 -7.424 -4.932 1.00 32.30 ? 2 DG A C2 1
ATOM 40 N N2 . DG A 1 2 ? 6.706 -6.828 -4.708 0.83 29.24 ? 2 DG A N2 1
ATOM 41 N N3 . DG A 1 2 ? 5.495 -8.754 -4.859 1.00 33.53 ? 2 DG A N3 1
ATOM 42 C C4 . DG A 1 2 ? 4.259 -9.275 -5.090 1.00 31.49 ? 2 DG A C4 1
ATOM 43 P P . DT A 1 3 ? 8.437 -13.768 -6.966 0.50 29.66 ? 3 DT A P 1
ATOM 44 O OP1 . DT A 1 3 ? 7.275 -14.354 -7.701 0.50 28.31 ? 3 DT A OP1 1
ATOM 45 O OP2 . DT A 1 3 ? 9.717 -14.517 -6.820 0.50 27.03 ? 3 DT A OP2 1
ATOM 46 O "O5'" . DT A 1 3 ? 8.726 -12.341 -7.643 1.00 29.62 ? 3 DT A "O5'" 1
ATOM 47 C "C5'" . DT A 1 3 ? 9.980 -11.628 -7.351 1.00 32.98 ? 3 DT A "C5'" 1
ATOM 48 C "C4'" . DT A 1 3 ? 10.140 -10.274 -8.079 1.00 33.34 ? 3 DT A "C4'" 1
ATOM 49 O "O4'" . DT A 1 3 ? 8.942 -9.834 -8.838 1.00 31.09 ? 3 DT A "O4'" 1
ATOM 50 C "C3'" . DT A 1 3 ? 10.489 -9.093 -7.141 1.00 33.40 ? 3 DT A "C3'" 1
ATOM 51 O "O3'" . DT A 1 3 ? 11.391 -8.206 -7.808 1.00 33.50 ? 3 DT A "O3'" 1
ATOM 52 C "C2'" . DT A 1 3 ? 9.128 -8.419 -6.963 1.00 30.61 ? 3 DT A "C2'" 1
ATOM 53 C "C1'" . DT A 1 3 ? 8.654 -8.506 -8.414 1.00 25.66 ? 3 DT A "C1'" 1
ATOM 54 N N1 . DT A 1 3 ? 7.270 -8.166 -8.607 1.00 21.49 ? 3 DT A N1 1
ATOM 55 C C2 . DT A 1 3 ? 7.058 -6.851 -8.795 1.00 22.80 ? 3 DT A C2 1
ATOM 56 O O2 . DT A 1 3 ? 7.979 -6.051 -8.780 1.00 26.00 ? 3 DT A O2 1
ATOM 57 N N3 . DT A 1 3 ? 5.758 -6.501 -8.991 1.00 21.98 ? 3 DT A N3 1
ATOM 58 C C4 . DT A 1 3 ? 4.677 -7.330 -9.001 1.00 21.73 ? 3 DT A C4 1
ATOM 59 O O4 . DT A 1 3 ? 3.561 -6.863 -9.168 1.00 21.83 ? 3 DT A O4 1
ATOM 60 C C5 . DT A 1 3 ? 4.965 -8.727 -8.787 1.00 21.34 ? 3 DT A C5 1
ATOM 61 C C7 . DT A 1 3 ? 3.872 -9.757 -8.777 0.17 21.46 ? 3 DT A C7 1
ATOM 62 C C6 . DT A 1 3 ? 6.243 -9.069 -8.601 1.00 21.98 ? 3 DT A C6 1
ATOM 63 P P . DG A 1 4 ? 12.887 -7.993 -7.331 1.00 35.39 ? 4 DG A P 1
ATOM 64 O OP1 . DG A 1 4 ? 12.994 -8.274 -5.877 1.00 36.91 ? 4 DG A OP1 1
ATOM 65 O OP2 . DG A 1 4 ? 13.286 -6.634 -7.772 1.00 37.16 ? 4 DG A OP2 1
ATOM 66 O "O5'" . DG A 1 4 ? 13.649 -9.150 -8.170 1.00 31.97 ? 4 DG A "O5'" 1
ATOM 67 C "C5'" . DG A 1 4 ? 14.036 -8.976 -9.590 1.00 29.06 ? 4 DG A "C5'" 1
ATOM 68 C "C4'" . DG A 1 4 ? 13.944 -10.313 -10.335 1.00 27.10 ? 4 DG A "C4'" 1
ATOM 69 O "O4'" . DG A 1 4 ? 12.604 -10.845 -10.148 1.00 25.64 ? 4 DG A "O4'" 1
ATOM 70 C "C3'" . DG A 1 4 ? 14.090 -10.254 -11.855 1.00 25.82 ? 4 DG A "C3'" 1
ATOM 71 O "O3'" . DG A 1 4 ? 15.453 -10.436 -12.284 1.00 26.41 ? 4 DG A "O3'" 1
ATOM 72 C "C2'" . DG A 1 4 ? 13.201 -11.382 -12.363 1.00 22.91 ? 4 DG A "C2'" 1
ATOM 73 C "C1'" . DG A 1 4 ? 12.320 -11.746 -11.188 1.00 22.87 ? 4 DG A "C1'" 1
ATOM 74 N N9 . DG A 1 4 ? 10.909 -11.623 -11.512 1.00 26.38 ? 4 DG A N9 1
ATOM 75 C C8 . DG A 1 4 ? 10.007 -12.655 -11.601 1.00 29.18 ? 4 DG A C8 1
ATOM 76 N N7 . DG A 1 4 ? 8.784 -12.291 -11.907 1.00 28.77 ? 4 DG A N7 1
ATOM 77 C C5 . DG A 1 4 ? 8.876 -10.922 -12.025 1.00 25.08 ? 4 DG A C5 1
ATOM 78 C C6 . DG A 1 4 ? 7.863 -10.019 -12.354 1.00 23.96 ? 4 DG A C6 1
ATOM 79 O O6 . DG A 1 4 ? 6.658 -10.241 -12.610 1.00 21.58 ? 4 DG A O6 1
ATOM 80 N N1 . DG A 1 4 ? 8.402 -8.737 -12.372 1.00 24.44 ? 4 DG A N1 1
ATOM 81 C C2 . DG A 1 4 ? 9.704 -8.370 -12.112 1.00 23.98 ? 4 DG A C2 1
ATOM 82 N N2 . DG A 1 4 ? 10.001 -7.067 -12.161 0.83 22.23 ? 4 DG A N2 1
ATOM 83 N N3 . DG A 1 4 ? 10.652 -9.220 -11.801 1.00 25.40 ? 4 DG A N3 1
ATOM 84 C C4 . DG A 1 4 ? 10.166 -10.484 -11.782 1.00 26.13 ? 4 DG A C4 1
ATOM 85 O "O5'" . DT B 1 1 ? 1.935 -1.190 -13.244 1.00 27.67 ? 5 DT B "O5'" 1
ATOM 86 C "C5'" . DT B 1 1 ? 3.325 -1.198 -13.661 1.00 27.53 ? 5 DT B "C5'" 1
ATOM 87 C "C4'" . DT B 1 1 ? 4.302 -1.186 -12.472 1.00 26.04 ? 5 DT B "C4'" 1
ATOM 88 O "O4'" . DT B 1 1 ? 4.398 -2.494 -11.809 1.00 24.17 ? 5 DT B "O4'" 1
ATOM 89 C "C3'" . DT B 1 1 ? 5.729 -0.843 -12.862 1.00 25.09 ? 5 DT B "C3'" 1
ATOM 90 O "O3'" . DT B 1 1 ? 6.418 -0.193 -11.795 1.00 26.00 ? 5 DT B "O3'" 1
ATOM 91 C "C2'" . DT B 1 1 ? 6.276 -2.240 -13.155 1.00 24.84 ? 5 DT B "C2'" 1
ATOM 92 C "C1'" . DT B 1 1 ? 5.702 -3.036 -11.986 1.00 21.95 ? 5 DT B "C1'" 1
ATOM 93 N N1 . DT B 1 1 ? 5.651 -4.535 -12.167 1.00 19.57 ? 5 DT B N1 1
ATOM 94 C C2 . DT B 1 1 ? 6.761 -5.300 -12.427 1.00 18.34 ? 5 DT B C2 1
ATOM 95 O O2 . DT B 1 1 ? 7.897 -4.906 -12.540 1.00 20.15 ? 5 DT B O2 1
ATOM 96 N N3 . DT B 1 1 ? 6.525 -6.620 -12.548 1.00 17.36 ? 5 DT B N3 1
ATOM 97 C C4 . DT B 1 1 ? 5.347 -7.301 -12.430 1.00 18.18 ? 5 DT B C4 1
ATOM 98 O O4 . DT B 1 1 ? 5.262 -8.515 -12.555 1.00 19.44 ? 5 DT B O4 1
ATOM 99 C C5 . DT B 1 1 ? 4.219 -6.483 -12.164 1.00 18.53 ? 5 DT B C5 1
ATOM 100 C C7 . DT B 1 1 ? 2.857 -7.104 -12.026 0.17 18.85 ? 5 DT B C7 1
ATOM 101 C C6 . DT B 1 1 ? 4.436 -5.166 -12.038 1.00 20.48 ? 5 DT B C6 1
ATOM 102 P P . DG B 1 2 ? 7.726 0.715 -12.093 1.00 29.17 ? 6 DG B P 1
ATOM 103 O OP1 . DG B 1 2 ? 7.336 1.763 -13.079 1.00 27.98 ? 6 DG B OP1 1
ATOM 104 O OP2 . DG B 1 2 ? 8.849 -0.200 -12.431 1.00 28.19 ? 6 DG B OP2 1
ATOM 105 O "O5'" . DG B 1 2 ? 8.197 1.564 -10.764 1.00 29.07 ? 6 DG B "O5'" 1
ATOM 106 C "C5'" . DG B 1 2 ? 7.911 1.119 -9.436 1.00 29.40 ? 6 DG B "C5'" 1
ATOM 107 C "C4'" . DG B 1 2 ? 6.812 1.973 -8.834 1.00 29.07 ? 6 DG B "C4'" 1
ATOM 108 O "O4'" . DG B 1 2 ? 5.591 1.524 -9.467 1.00 28.60 ? 6 DG B "O4'" 1
ATOM 109 C "C3'" . DG B 1 2 ? 6.598 1.724 -7.347 1.00 30.61 ? 6 DG B "C3'" 1
ATOM 110 O "O3'" . DG B 1 2 ? 7.330 2.695 -6.529 1.00 28.98 ? 6 DG B "O3'" 1
ATOM 111 C "C2'" . DG B 1 2 ? 5.062 1.788 -7.190 1.00 31.53 ? 6 DG B "C2'" 1
ATOM 112 C "C1'" . DG B 1 2 ? 4.493 1.536 -8.584 1.00 30.81 ? 6 DG B "C1'" 1
ATOM 113 N N9 . DG B 1 2 ? 3.760 0.270 -8.685 1.00 33.17 ? 6 DG B N9 1
ATOM 114 C C8 . DG B 1 2 ? 2.395 0.067 -8.830 1.00 34.66 ? 6 DG B C8 1
ATOM 115 N N7 . DG B 1 2 ? 2.055 -1.205 -8.859 1.00 35.38 ? 6 DG B N7 1
ATOM 116 C C5 . DG B 1 2 ? 3.262 -1.902 -8.733 1.00 34.40 ? 6 DG B C5 1
ATOM 117 C C6 . DG B 1 2 ? 3.563 -3.299 -8.696 1.00 33.51 ? 6 DG B C6 1
ATOM 118 O O6 . DG B 1 2 ? 2.828 -4.290 -8.777 1.00 34.14 ? 6 DG B O6 1
ATOM 119 N N1 . DG B 1 2 ? 4.919 -3.541 -8.545 1.00 33.80 ? 6 DG B N1 1
ATOM 120 C C2 . DG B 1 2 ? 5.885 -2.560 -8.424 1.00 35.57 ? 6 DG B C2 1
ATOM 121 N N2 . DG B 1 2 ? 7.159 -2.964 -8.273 0.83 34.77 ? 6 DG B N2 1
ATOM 122 N N3 . DG B 1 2 ? 5.631 -1.252 -8.463 1.00 35.72 ? 6 DG B N3 1
ATOM 123 C C4 . DG B 1 2 ? 4.308 -0.996 -8.625 1.00 34.33 ? 6 DG B C4 1
ATOM 124 P P . DT B 1 3 ? 6.989 2.974 -4.966 0.50 28.02 ? 7 DT B P 1
ATOM 125 O OP1 . DT B 1 3 ? 5.712 2.353 -4.536 0.50 27.29 ? 7 DT B OP1 1
ATOM 126 O OP2 . DT B 1 3 ? 7.195 4.429 -4.778 0.50 29.22 ? 7 DT B OP2 1
ATOM 127 O "O5'" . DT B 1 3 ? 8.160 2.235 -4.177 1.00 27.24 ? 7 DT B "O5'" 1
ATOM 128 C "C5'" . DT B 1 3 ? 9.209 1.644 -4.936 1.00 28.32 ? 7 DT B "C5'" 1
ATOM 129 C "C4'" . DT B 1 3 ? 9.332 0.152 -4.638 1.00 27.80 ? 7 DT B "C4'" 1
ATOM 130 O "O4'" . DT B 1 3 ? 8.038 -0.507 -4.598 1.00 28.20 ? 7 DT B "O4'" 1
ATOM 131 C "C3'" . DT B 1 3 ? 10.201 -0.677 -5.576 1.00 27.23 ? 7 DT B "C3'" 1
ATOM 132 O "O3'" . DT B 1 3 ? 11.238 -1.140 -4.714 1.00 28.67 ? 7 DT B "O3'" 1
ATOM 133 C "C2'" . DT B 1 3 ? 9.250 -1.766 -6.114 1.00 25.77 ? 7 DT B "C2'" 1
ATOM 134 C "C1'" . DT B 1 3 ? 8.234 -1.854 -4.975 1.00 25.26 ? 7 DT B "C1'" 1
ATOM 135 N N1 . DT B 1 3 ? 6.884 -2.516 -5.140 1.00 23.71 ? 7 DT B N1 1
ATOM 136 C C2 . DT B 1 3 ? 6.831 -3.878 -5.228 1.00 23.53 ? 7 DT B C2 1
ATOM 137 O O2 . DT B 1 3 ? 7.818 -4.601 -5.217 1.00 20.36 ? 7 DT B O2 1
ATOM 138 N N3 . DT B 1 3 ? 5.550 -4.383 -5.340 1.00 26.13 ? 7 DT B N3 1
ATOM 139 C C4 . DT B 1 3 ? 4.315 -3.735 -5.364 1.00 26.25 ? 7 DT B C4 1
ATOM 140 O O4 . DT B 1 3 ? 3.249 -4.385 -5.487 1.00 21.99 ? 7 DT B O4 1
ATOM 141 C C5 . DT B 1 3 ? 4.455 -2.275 -5.254 1.00 25.27 ? 7 DT B C5 1
ATOM 142 C C7 . DT B 1 3 ? 3.265 -1.356 -5.255 0.17 24.87 ? 7 DT B C7 1
ATOM 143 C C6 . DT B 1 3 ? 5.705 -1.771 -5.145 1.00 24.79 ? 7 DT B C6 1
ATOM 144 P P . DG B 1 4 ? 12.752 -1.135 -5.200 1.00 28.82 ? 8 DG B P 1
ATOM 145 O OP1 . DG B 1 4 ? 12.858 0.139 -5.957 1.00 29.69 ? 8 DG B OP1 1
ATOM 146 O OP2 . DG B 1 4 ? 13.049 -2.429 -5.873 1.00 27.08 ? 8 DG B OP2 1
ATOM 147 O "O5'" . DG B 1 4 ? 13.663 -1.027 -3.867 1.00 26.18 ? 8 DG B "O5'" 1
ATOM 148 C "C5'" . DG B 1 4 ? 13.113 -0.877 -2.586 1.00 25.90 ? 8 DG B "C5'" 1
ATOM 149 C "C4'" . DG B 1 4 ? 13.296 0.510 -2.002 1.00 24.60 ? 8 DG B "C4'" 1
ATOM 150 O "O4'" . DG B 1 4 ? 12.117 1.239 -2.357 1.00 25.21 ? 8 DG B "O4'" 1
ATOM 151 C "C3'" . DG B 1 4 ? 13.234 0.509 -0.474 1.00 26.28 ? 8 DG B "C3'" 1
ATOM 152 O "O3'" . DG B 1 4 ? 14.542 0.642 0.101 1.00 28.95 ? 8 DG B "O3'" 1
ATOM 153 C "C2'" . DG B 1 4 ? 12.360 1.694 -0.053 1.00 25.20 ? 8 DG B "C2'" 1
ATOM 154 C "C1'" . DG B 1 4 ? 11.848 2.212 -1.380 1.00 26.04 ? 8 DG B "C1'" 1
ATOM 155 N N9 . DG B 1 4 ? 10.427 2.443 -1.265 1.00 27.08 ? 8 DG B N9 1
ATOM 156 C C8 . DG B 1 4 ? 9.823 3.636 -0.959 1.00 30.04 ? 8 DG B C8 1
ATOM 157 N N7 . DG B 1 4 ? 8.522 3.571 -0.901 1.00 32.19 ? 8 DG B N7 1
ATOM 158 C C5 . DG B 1 4 ? 8.275 2.239 -1.177 1.00 31.67 ? 8 DG B C5 1
ATOM 159 C C6 . DG B 1 4 ? 7.037 1.580 -1.255 1.00 35.47 ? 8 DG B C6 1
ATOM 160 O O6 . DG B 1 4 ? 5.943 2.138 -1.061 1.00 41.38 ? 8 DG B O6 1
ATOM 161 N N1 . DG B 1 4 ? 7.157 0.209 -1.586 1.00 34.31 ? 8 DG B N1 1
ATOM 162 C C2 . DG B 1 4 ? 8.396 -0.411 -1.789 1.00 33.21 ? 8 DG B C2 1
ATOM 163 N N2 . DG B 1 4 ? 8.412 -1.729 -2.080 0.83 31.33 ? 8 DG B N2 1
ATOM 164 N N3 . DG B 1 4 ? 9.574 0.226 -1.715 1.00 30.43 ? 8 DG B N3 1
ATOM 165 C C4 . DG B 1 4 ? 9.428 1.533 -1.401 1.00 28.40 ? 8 DG B C4 1
HETATM 166 O O . HOH C 2 . ? 12.178 -12.332 -0.594 1.00 34.31 ? 101 HOH A O 1
HETATM 167 O O . HOH C 2 . ? 5.742 -14.777 -11.944 1.00 2.00 ? 102 HOH A O 1
HETATM 168 O O . HOH D 2 . ? 15.333 -3.484 -8.083 1.00 30.80 ? 101 HOH B O 1
#