data_3T86
#
_entry.id 3T86
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3T86 pdb_00003t86 10.2210/pdb3t86/pdb
NDB NA1256 ? ?
RCSB RCSB067158 ? ?
WWPDB D_1000067158 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-06-13
2 'Structure model' 1 1 2014-11-12
3 'Structure model' 1 2 2017-11-22
4 'Structure model' 1 3 2024-02-28
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Structure summary'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' pdbx_database_related
2 4 'Structure model' chem_comp_atom
3 4 'Structure model' chem_comp_bond
4 4 'Structure model' database_2
5 4 'Structure model' pdbx_struct_conn_angle
6 4 'Structure model' pdbx_struct_special_symmetry
7 4 'Structure model' struct_conn
8 4 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_database_2.pdbx_DOI'
2 4 'Structure model' '_database_2.pdbx_database_accession'
3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
5 4 'Structure model' '_pdbx_struct_conn_angle.value'
6 4 'Structure model' '_struct_conn.pdbx_dist_value'
7 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
9 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'
10 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'
11 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'
12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
13 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
14 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
15 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3T86
_pdbx_database_status.recvd_initial_deposition_date 2011-08-01
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1QYK 'metal ions with the GCATGCT sequence' unspecified
PDB 1QYL . unspecified
PDB 1QLZ . unspecified
PDB 1R2O . unspecified
PDB 1MF5 . unspecified
PDB 184D . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Cardin, C.J.' 1
'Gan, Y.' 2
#
_citation.id primary
_citation.title
;A novel structure for the d(GCATGCT) quadruplex in the presence of nickel and cobalt aqueous cations : comparison with the vanadium, barium and calcium-bound structural motif.
;
_citation.journal_abbrev 'To be Published'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Gan, Y.' 1 ?
primary 'Thorpe, J.H.' 2 ?
primary 'Teixeira, S.C.M.' 3 ?
primary 'Naseer, A.' 4 ?
primary 'Cardin, C.J.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3')
;
2113.410 1 ? ? ? 'DNA heptamer'
2 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ?
3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ?
4 water nat water 18.015 10 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DA)(DT)(DG)(DC)(DT)'
_entity_poly.pdbx_seq_one_letter_code_can GCATGCT
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'POTASSIUM ION' K
3 'CALCIUM ION' CA
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DC n
1 3 DA n
1 4 DT n
1 5 DG n
1 6 DC n
1 7 DT n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 DA 3 3 3 DA DA A . n
A 1 4 DT 4 4 4 DT DT A . n
A 1 5 DG 5 5 5 DG DG A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DT 7 7 7 DT DT A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K 1 8 8 K K A .
C 3 CA 1 9 9 CA CA A .
D 4 HOH 1 101 101 HOH HOH A .
D 4 HOH 2 102 102 HOH HOH A .
D 4 HOH 3 103 103 HOH HOH A .
D 4 HOH 4 104 104 HOH HOH A .
D 4 HOH 5 105 105 HOH HOH A .
D 4 HOH 6 106 106 HOH HOH A .
D 4 HOH 7 107 107 HOH HOH A .
D 4 HOH 8 108 108 HOH HOH A .
D 4 HOH 9 109 109 HOH HOH A .
D 4 HOH 10 110 110 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CrystalClear 'data collection' . ? 1
XFIT 'data reduction' . ? 2
REFMAC refinement 5.0 ? 3
MOSFLM 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_cell.entry_id 3T86
_cell.length_a 22.742
_cell.length_b 58.341
_cell.length_c 23.669
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3T86
_symmetry.space_group_name_H-M 'C 2 2 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 21
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3T86
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 1.86
_exptl_crystal.density_percent_sol 33.78
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 290
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.pdbx_details
;Drops initially containing 2ul 20 mm sodium cacodylate, 2ul calcium chloride, 2ul potassium chloride, 2 ul 10% PEG, 2ul 1 mM DNA, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 290K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type 'RIGAKU RAXIS IV++'
_diffrn_detector.pdbx_collection_date 2004-01-01
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'RIGAKU FR-D'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 3T86
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F 0.0
_reflns.d_resolution_low 29.11
_reflns.d_resolution_high 1.90
_reflns.number_obs 1246
_reflns.number_all 1246
_reflns.percent_possible_obs 95.7
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_refine.entry_id 3T86
_refine.ls_number_reflns_obs 1233
_refine.ls_number_reflns_all 1246
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 29.11
_refine.ls_d_res_high 1.90
_refine.ls_percent_reflns_obs 93.85
_refine.ls_R_factor_obs 0.24135
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.23927
_refine.ls_R_factor_R_free 0.27918
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.9
_refine.ls_number_reflns_R_free 64
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.938
_refine.correlation_coeff_Fo_to_Fc_free 0.890
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R_Free 0.193
_refine.overall_SU_ML 0.156
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 140
_refine_hist.pdbx_number_atoms_ligand 2
_refine_hist.number_atoms_solvent 10
_refine_hist.number_atoms_total 152
_refine_hist.d_res_high 1.90
_refine_hist.d_res_low 29.11
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
r_bond_refined_d 0.013 0.021 ? 156 ? 'X-RAY DIFFRACTION'
r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION'
r_angle_refined_deg 2.199 3.000 ? 239 ? 'X-RAY DIFFRACTION'
r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION'
r_chiral_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_gen_planes_refined 0.009 0.020 ? 71 ? 'X-RAY DIFFRACTION'
r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbd_refined 0.168 0.200 ? 43 ? 'X-RAY DIFFRACTION'
r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_nbtor_refined 0.304 0.200 ? 88 ? 'X-RAY DIFFRACTION'
r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_refined 0.273 0.200 ? 3 ? 'X-RAY DIFFRACTION'
r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION'
r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_refined 0.127 0.200 ? 12 ? 'X-RAY DIFFRACTION'
r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_refined 0.130 0.200 ? 10 ? 'X-RAY DIFFRACTION'
r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_refined 0.143 0.200 ? 3 ? 'X-RAY DIFFRACTION'
r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION'
r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION'
r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION'
r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION'
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.900
_refine_ls_shell.d_res_low 1.950
_refine_ls_shell.number_reflns_R_work 87
_refine_ls_shell.R_factor_R_work 0.375
_refine_ls_shell.percent_reflns_obs 87.62
_refine_ls_shell.R_factor_R_free 0.263
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 5
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 156
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_database_PDB_matrix.entry_id 3T86
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 3T86
_struct.title 'd(GCATGCT) + calcium'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3T86
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'quadruplex, loop, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3T86
_struct_ref.pdbx_db_accession 3T86
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code GCATGCT
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3T86
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 7
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3T86
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 7
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 7
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details tetrameric
_pdbx_struct_assembly.oligomeric_count 4
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2270 ?
1 MORE -26 ?
1 'SSA (A^2)' 4700 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 22.7420000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 22.7420000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 23.6690000000
4 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 23.6690000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 B K . K ? ? A DC 2 A K 8 1_555 ? ? ? ? ? ? ? 2.846 ? ?
metalc2 metalc ? ? A DC 6 OP1 ? ? ? 1_555 B K . K ? ? A DC 6 A K 8 1_555 ? ? ? ? ? ? ? 2.942 ? ?
metalc3 metalc ? ? B K . K ? ? ? 1_555 D HOH . O ? ? A K 8 A HOH 102 1_555 ? ? ? ? ? ? ? 3.133 ? ?
metalc4 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 9 A HOH 103 1_555 ? ? ? ? ? ? ? 2.466 ? ?
metalc5 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 9 A HOH 106 1_555 ? ? ? ? ? ? ? 2.208 ? ?
metalc6 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 9 A HOH 107 1_555 ? ? ? ? ? ? ? 2.648 ? ?
hydrog1 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 1 A DC 6 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ?
hydrog2 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 2 A DG 5 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 OP1 ? A DC 2 ? A DC 2 ? 1_555 K ? B K . ? A K 8 ? 1_555 OP1 ? A DC 6 ? A DC 6 ? 1_555 85.7 ?
2 OP1 ? A DC 2 ? A DC 2 ? 1_555 K ? B K . ? A K 8 ? 1_555 O ? D HOH . ? A HOH 102 ? 1_555 77.4 ?
3 OP1 ? A DC 6 ? A DC 6 ? 1_555 K ? B K . ? A K 8 ? 1_555 O ? D HOH . ? A HOH 102 ? 1_555 67.3 ?
4 O ? D HOH . ? A HOH 103 ? 1_555 CA ? C CA . ? A CA 9 ? 1_555 O ? D HOH . ? A HOH 106 ? 1_555 92.1 ?
5 O ? D HOH . ? A HOH 103 ? 1_555 CA ? C CA . ? A CA 9 ? 1_555 O ? D HOH . ? A HOH 107 ? 1_555 83.3 ?
6 O ? D HOH . ? A HOH 106 ? 1_555 CA ? C CA . ? A CA 9 ? 1_555 O ? D HOH . ? A HOH 107 ? 1_555 95.9 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A K 8 ? 7 'BINDING SITE FOR RESIDUE K A 8'
AC2 Software A CA 9 ? 12 'BINDING SITE FOR RESIDUE CA A 9'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 7 DG A 1 ? DG A 1 . ? 1_555 ?
2 AC1 7 DG A 1 ? DG A 1 . ? 3_656 ?
3 AC1 7 DC A 2 ? DC A 2 . ? 1_555 ?
4 AC1 7 DC A 2 ? DC A 2 . ? 3_656 ?
5 AC1 7 DC A 6 ? DC A 6 . ? 3_656 ?
6 AC1 7 DC A 6 ? DC A 6 . ? 1_555 ?
7 AC1 7 HOH D . ? HOH A 102 . ? 3_656 ?
8 AC2 12 HOH D . ? HOH A 103 . ? 1_555 ?
9 AC2 12 HOH D . ? HOH A 103 . ? 2_555 ?
10 AC2 12 HOH D . ? HOH A 103 . ? 3_555 ?
11 AC2 12 HOH D . ? HOH A 103 . ? 4_555 ?
12 AC2 12 HOH D . ? HOH A 106 . ? 3_555 ?
13 AC2 12 HOH D . ? HOH A 106 . ? 1_555 ?
14 AC2 12 HOH D . ? HOH A 106 . ? 4_555 ?
15 AC2 12 HOH D . ? HOH A 106 . ? 2_555 ?
16 AC2 12 HOH D . ? HOH A 107 . ? 4_555 ?
17 AC2 12 HOH D . ? HOH A 107 . ? 3_555 ?
18 AC2 12 HOH D . ? HOH A 107 . ? 2_555 ?
19 AC2 12 HOH D . ? HOH A 107 . ? 1_555 ?
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DT
_pdbx_validate_rmsd_bond.auth_seq_id_1 4
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DT
_pdbx_validate_rmsd_bond.auth_seq_id_2 4
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.380
_pdbx_validate_rmsd_bond.bond_target_value 1.419
_pdbx_validate_rmsd_bond.bond_deviation -0.039
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.006
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 100.58 108.00 -7.42 0.70 N
2 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.94 108.30 2.64 0.30 N
3 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 103.47 108.00 -4.53 0.70 N
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A K 8 ? B K .
2 1 A CA 9 ? C CA .
3 1 A HOH 101 ? D HOH .
4 1 A HOH 103 ? D HOH .
5 1 A HOH 106 ? D HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CA CA CA N N 1
DA OP3 O N N 2
DA P P N N 3
DA OP1 O N N 4
DA OP2 O N N 5
DA "O5'" O N N 6
DA "C5'" C N N 7
DA "C4'" C N R 8
DA "O4'" O N N 9
DA "C3'" C N S 10
DA "O3'" O N N 11
DA "C2'" C N N 12
DA "C1'" C N R 13
DA N9 N Y N 14
DA C8 C Y N 15
DA N7 N Y N 16
DA C5 C Y N 17
DA C6 C Y N 18
DA N6 N N N 19
DA N1 N Y N 20
DA C2 C Y N 21
DA N3 N Y N 22
DA C4 C Y N 23
DA HOP3 H N N 24
DA HOP2 H N N 25
DA "H5'" H N N 26
DA "H5''" H N N 27
DA "H4'" H N N 28
DA "H3'" H N N 29
DA "HO3'" H N N 30
DA "H2'" H N N 31
DA "H2''" H N N 32
DA "H1'" H N N 33
DA H8 H N N 34
DA H61 H N N 35
DA H62 H N N 36
DA H2 H N N 37
DC OP3 O N N 38
DC P P N N 39
DC OP1 O N N 40
DC OP2 O N N 41
DC "O5'" O N N 42
DC "C5'" C N N 43
DC "C4'" C N R 44
DC "O4'" O N N 45
DC "C3'" C N S 46
DC "O3'" O N N 47
DC "C2'" C N N 48
DC "C1'" C N R 49
DC N1 N N N 50
DC C2 C N N 51
DC O2 O N N 52
DC N3 N N N 53
DC C4 C N N 54
DC N4 N N N 55
DC C5 C N N 56
DC C6 C N N 57
DC HOP3 H N N 58
DC HOP2 H N N 59
DC "H5'" H N N 60
DC "H5''" H N N 61
DC "H4'" H N N 62
DC "H3'" H N N 63
DC "HO3'" H N N 64
DC "H2'" H N N 65
DC "H2''" H N N 66
DC "H1'" H N N 67
DC H41 H N N 68
DC H42 H N N 69
DC H5 H N N 70
DC H6 H N N 71
DG OP3 O N N 72
DG P P N N 73
DG OP1 O N N 74
DG OP2 O N N 75
DG "O5'" O N N 76
DG "C5'" C N N 77
DG "C4'" C N R 78
DG "O4'" O N N 79
DG "C3'" C N S 80
DG "O3'" O N N 81
DG "C2'" C N N 82
DG "C1'" C N R 83
DG N9 N Y N 84
DG C8 C Y N 85
DG N7 N Y N 86
DG C5 C Y N 87
DG C6 C N N 88
DG O6 O N N 89
DG N1 N N N 90
DG C2 C N N 91
DG N2 N N N 92
DG N3 N N N 93
DG C4 C Y N 94
DG HOP3 H N N 95
DG HOP2 H N N 96
DG "H5'" H N N 97
DG "H5''" H N N 98
DG "H4'" H N N 99
DG "H3'" H N N 100
DG "HO3'" H N N 101
DG "H2'" H N N 102
DG "H2''" H N N 103
DG "H1'" H N N 104
DG H8 H N N 105
DG H1 H N N 106
DG H21 H N N 107
DG H22 H N N 108
DT OP3 O N N 109
DT P P N N 110
DT OP1 O N N 111
DT OP2 O N N 112
DT "O5'" O N N 113
DT "C5'" C N N 114
DT "C4'" C N R 115
DT "O4'" O N N 116
DT "C3'" C N S 117
DT "O3'" O N N 118
DT "C2'" C N N 119
DT "C1'" C N R 120
DT N1 N N N 121
DT C2 C N N 122
DT O2 O N N 123
DT N3 N N N 124
DT C4 C N N 125
DT O4 O N N 126
DT C5 C N N 127
DT C7 C N N 128
DT C6 C N N 129
DT HOP3 H N N 130
DT HOP2 H N N 131
DT "H5'" H N N 132
DT "H5''" H N N 133
DT "H4'" H N N 134
DT "H3'" H N N 135
DT "HO3'" H N N 136
DT "H2'" H N N 137
DT "H2''" H N N 138
DT "H1'" H N N 139
DT H3 H N N 140
DT H71 H N N 141
DT H72 H N N 142
DT H73 H N N 143
DT H6 H N N 144
HOH O O N N 145
HOH H1 H N N 146
HOH H2 H N N 147
K K K N N 148
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
DT OP3 P sing N N 113
DT OP3 HOP3 sing N N 114
DT P OP1 doub N N 115
DT P OP2 sing N N 116
DT P "O5'" sing N N 117
DT OP2 HOP2 sing N N 118
DT "O5'" "C5'" sing N N 119
DT "C5'" "C4'" sing N N 120
DT "C5'" "H5'" sing N N 121
DT "C5'" "H5''" sing N N 122
DT "C4'" "O4'" sing N N 123
DT "C4'" "C3'" sing N N 124
DT "C4'" "H4'" sing N N 125
DT "O4'" "C1'" sing N N 126
DT "C3'" "O3'" sing N N 127
DT "C3'" "C2'" sing N N 128
DT "C3'" "H3'" sing N N 129
DT "O3'" "HO3'" sing N N 130
DT "C2'" "C1'" sing N N 131
DT "C2'" "H2'" sing N N 132
DT "C2'" "H2''" sing N N 133
DT "C1'" N1 sing N N 134
DT "C1'" "H1'" sing N N 135
DT N1 C2 sing N N 136
DT N1 C6 sing N N 137
DT C2 O2 doub N N 138
DT C2 N3 sing N N 139
DT N3 C4 sing N N 140
DT N3 H3 sing N N 141
DT C4 O4 doub N N 142
DT C4 C5 sing N N 143
DT C5 C7 sing N N 144
DT C5 C6 doub N N 145
DT C7 H71 sing N N 146
DT C7 H72 sing N N 147
DT C7 H73 sing N N 148
DT C6 H6 sing N N 149
HOH O H1 sing N N 150
HOH O H2 sing N N 151
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3T86 'double helix'
3T86 'hairpin loop'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 6 1_555 -3.325 8.461 -0.381 -2.483 37.048 176.090 1 A_DG1:DC6_A A 1 ? A 6 ? ? ?
1 A DC 2 1_555 A DG 5 1_555 3.122 8.528 -0.218 10.990 36.172 177.253 2 A_DC2:DG5_A A 2 ? A 5 ? ? ?
#
_ndb_struct_na_base_pair_step.model_number 1
_ndb_struct_na_base_pair_step.i_label_asym_id_1 A
_ndb_struct_na_base_pair_step.i_label_comp_id_1 DG
_ndb_struct_na_base_pair_step.i_label_seq_id_1 1
_ndb_struct_na_base_pair_step.i_symmetry_1 1_555
_ndb_struct_na_base_pair_step.j_label_asym_id_1 A
_ndb_struct_na_base_pair_step.j_label_comp_id_1 DC
_ndb_struct_na_base_pair_step.j_label_seq_id_1 6
_ndb_struct_na_base_pair_step.j_symmetry_1 1_555
_ndb_struct_na_base_pair_step.i_label_asym_id_2 A
_ndb_struct_na_base_pair_step.i_label_comp_id_2 DC
_ndb_struct_na_base_pair_step.i_label_seq_id_2 2
_ndb_struct_na_base_pair_step.i_symmetry_2 1_555
_ndb_struct_na_base_pair_step.j_label_asym_id_2 A
_ndb_struct_na_base_pair_step.j_label_comp_id_2 DG
_ndb_struct_na_base_pair_step.j_label_seq_id_2 5
_ndb_struct_na_base_pair_step.j_symmetry_2 1_555
_ndb_struct_na_base_pair_step.shift 0.247
_ndb_struct_na_base_pair_step.slide 0.430
_ndb_struct_na_base_pair_step.rise 3.025
_ndb_struct_na_base_pair_step.tilt -2.437
_ndb_struct_na_base_pair_step.roll 3.785
_ndb_struct_na_base_pair_step.twist 29.175
_ndb_struct_na_base_pair_step.x_displacement 0.094
_ndb_struct_na_base_pair_step.y_displacement -0.967
_ndb_struct_na_base_pair_step.helical_rise 3.025
_ndb_struct_na_base_pair_step.inclination 7.458
_ndb_struct_na_base_pair_step.tip 4.803
_ndb_struct_na_base_pair_step.helical_twist 29.513
_ndb_struct_na_base_pair_step.step_number 1
_ndb_struct_na_base_pair_step.step_name AA_DG1DC2:DG5DC6_AA
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 A
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ?
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 A
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 6
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ?
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 A
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ?
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 A
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 5
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ?
#
_atom_sites.entry_id 3T86
_atom_sites.fract_transf_matrix[1][1] 0.043972
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.017141
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.042249
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CA
K
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 17.025 9.020 8.603 1.00 20.44 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 15.814 9.676 8.847 1.00 18.17 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 14.706 8.884 8.177 1.00 17.95 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 14.835 8.980 6.738 1.00 18.83 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 14.552 7.397 8.496 1.00 15.80 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 13.145 7.203 8.778 1.00 15.05 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 15.042 6.703 7.225 1.00 16.42 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 14.689 7.706 6.148 1.00 13.92 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 15.636 7.810 5.051 1.00 16.35 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 17.017 7.649 5.082 1.00 14.66 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 17.557 7.853 3.915 1.00 15.55 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 16.490 8.170 3.063 1.00 15.05 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 16.448 8.482 1.663 1.00 14.28 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 17.345 8.584 0.813 1.00 13.70 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 15.152 8.724 1.243 1.00 15.89 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 14.017 8.696 2.028 1.00 13.71 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 12.869 8.980 1.407 1.00 12.40 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 14.032 8.421 3.310 1.00 12.33 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 15.300 8.152 3.754 1.00 14.15 ? 1 DG A C4 1
ATOM 20 P P . DC A 1 2 ? 12.549 5.789 9.163 1.00 15.31 ? 2 DC A P 1
ATOM 21 O OP1 . DC A 1 2 ? 11.337 5.965 9.935 1.00 16.40 ? 2 DC A OP1 1
ATOM 22 O OP2 . DC A 1 2 ? 13.630 4.916 9.636 1.00 14.53 ? 2 DC A OP2 1
ATOM 23 O "O5'" . DC A 1 2 ? 12.067 5.211 7.791 1.00 16.87 ? 2 DC A "O5'" 1
ATOM 24 C "C5'" . DC A 1 2 ? 11.005 5.822 7.052 1.00 15.27 ? 2 DC A "C5'" 1
ATOM 25 C "C4'" . DC A 1 2 ? 11.007 5.176 5.683 1.00 15.01 ? 2 DC A "C4'" 1
ATOM 26 O "O4'" . DC A 1 2 ? 12.199 5.573 4.953 1.00 15.58 ? 2 DC A "O4'" 1
ATOM 27 C "C3'" . DC A 1 2 ? 11.045 3.656 5.703 1.00 13.50 ? 2 DC A "C3'" 1
ATOM 28 O "O3'" . DC A 1 2 ? 9.763 3.183 5.314 1.00 14.70 ? 2 DC A "O3'" 1
ATOM 29 C "C2'" . DC A 1 2 ? 12.122 3.258 4.692 1.00 12.97 ? 2 DC A "C2'" 1
ATOM 30 C "C1'" . DC A 1 2 ? 12.368 4.576 3.965 1.00 15.12 ? 2 DC A "C1'" 1
ATOM 31 N N1 . DC A 1 2 ? 13.699 4.715 3.388 1.00 13.17 ? 2 DC A N1 1
ATOM 32 C C2 . DC A 1 2 ? 13.811 5.104 2.048 1.00 12.92 ? 2 DC A C2 1
ATOM 33 O O2 . DC A 1 2 ? 12.799 5.360 1.379 1.00 13.25 ? 2 DC A O2 1
ATOM 34 N N3 . DC A 1 2 ? 15.048 5.233 1.521 1.00 14.79 ? 2 DC A N3 1
ATOM 35 C C4 . DC A 1 2 ? 16.129 4.976 2.274 1.00 13.98 ? 2 DC A C4 1
ATOM 36 N N4 . DC A 1 2 ? 17.333 5.108 1.703 1.00 13.63 ? 2 DC A N4 1
ATOM 37 C C5 . DC A 1 2 ? 16.021 4.551 3.629 1.00 14.55 ? 2 DC A C5 1
ATOM 38 C C6 . DC A 1 2 ? 14.794 4.438 4.146 1.00 12.93 ? 2 DC A C6 1
ATOM 39 P P . DA A 1 3 ? 8.926 2.212 6.252 1.00 14.97 ? 3 DA A P 1
ATOM 40 O OP1 . DA A 1 3 ? 8.888 2.849 7.585 1.00 18.02 ? 3 DA A OP1 1
ATOM 41 O OP2 . DA A 1 3 ? 9.465 0.879 6.049 1.00 13.55 ? 3 DA A OP2 1
ATOM 42 O "O5'" . DA A 1 3 ? 7.450 2.322 5.711 1.00 15.47 ? 3 DA A "O5'" 1
ATOM 43 C "C5'" . DA A 1 3 ? 6.748 3.585 5.714 1.00 15.06 ? 3 DA A "C5'" 1
ATOM 44 C "C4'" . DA A 1 3 ? 5.893 3.713 4.463 1.00 15.41 ? 3 DA A "C4'" 1
ATOM 45 O "O4'" . DA A 1 3 ? 6.779 3.850 3.332 1.00 15.90 ? 3 DA A "O4'" 1
ATOM 46 C "C3'" . DA A 1 3 ? 4.956 2.556 4.094 1.00 14.58 ? 3 DA A "C3'" 1
ATOM 47 O "O3'" . DA A 1 3 ? 3.736 3.128 3.637 1.00 16.86 ? 3 DA A "O3'" 1
ATOM 48 C "C2'" . DA A 1 3 ? 5.679 1.786 3.002 1.00 11.79 ? 3 DA A "C2'" 1
ATOM 49 C "C1'" . DA A 1 3 ? 6.395 2.945 2.326 1.00 12.60 ? 3 DA A "C1'" 1
ATOM 50 N N9 . DA A 1 3 ? 7.593 2.582 1.573 1.00 13.61 ? 3 DA A N9 1
ATOM 51 C C8 . DA A 1 3 ? 8.890 2.629 1.995 1.00 11.90 ? 3 DA A C8 1
ATOM 52 N N7 . DA A 1 3 ? 9.744 2.243 1.088 1.00 13.07 ? 3 DA A N7 1
ATOM 53 C C5 . DA A 1 3 ? 8.952 1.932 0.007 1.00 11.80 ? 3 DA A C5 1
ATOM 54 C C6 . DA A 1 3 ? 9.221 1.474 -1.303 1.00 12.99 ? 3 DA A C6 1
ATOM 55 N N6 . DA A 1 3 ? 10.443 1.209 -1.752 1.00 13.19 ? 3 DA A N6 1
ATOM 56 N N1 . DA A 1 3 ? 8.182 1.268 -2.147 1.00 12.11 ? 3 DA A N1 1
ATOM 57 C C2 . DA A 1 3 ? 6.953 1.491 -1.737 1.00 9.82 ? 3 DA A C2 1
ATOM 58 N N3 . DA A 1 3 ? 6.579 1.950 -0.557 1.00 14.17 ? 3 DA A N3 1
ATOM 59 C C4 . DA A 1 3 ? 7.629 2.127 0.285 1.00 11.54 ? 3 DA A C4 1
ATOM 60 P P . DT A 1 4 ? 2.284 2.571 4.016 1.00 18.41 ? 4 DT A P 1
ATOM 61 O OP1 . DT A 1 4 ? 2.300 1.081 4.081 1.00 16.24 ? 4 DT A OP1 1
ATOM 62 O OP2 . DT A 1 4 ? 1.470 3.281 3.038 1.00 20.91 ? 4 DT A OP2 1
ATOM 63 O "O5'" . DT A 1 4 ? 1.914 3.122 5.450 1.00 16.58 ? 4 DT A "O5'" 1
ATOM 64 C "C5'" . DT A 1 4 ? 1.583 4.468 5.738 1.00 15.45 ? 4 DT A "C5'" 1
ATOM 65 C "C4'" . DT A 1 4 ? 1.733 4.633 7.226 1.00 17.28 ? 4 DT A "C4'" 1
ATOM 66 O "O4'" . DT A 1 4 ? 1.110 3.492 7.870 1.00 17.47 ? 4 DT A "O4'" 1
ATOM 67 C "C3'" . DT A 1 4 ? 3.192 4.637 7.661 1.00 16.98 ? 4 DT A "C3'" 1
ATOM 68 O "O3'" . DT A 1 4 ? 3.389 5.603 8.626 1.00 17.37 ? 4 DT A "O3'" 1
ATOM 69 C "C2'" . DT A 1 4 ? 3.402 3.281 8.319 1.00 16.55 ? 4 DT A "C2'" 1
ATOM 70 C "C1'" . DT A 1 4 ? 1.993 2.928 8.785 1.00 14.13 ? 4 DT A "C1'" 1
ATOM 71 N N1 . DT A 1 4 ? 1.867 1.480 8.804 1.00 15.58 ? 4 DT A N1 1
ATOM 72 C C2 . DT A 1 4 ? 1.746 0.888 10.041 1.00 16.45 ? 4 DT A C2 1
ATOM 73 O O2 . DT A 1 4 ? 1.706 1.522 11.076 1.00 14.27 ? 4 DT A O2 1
ATOM 74 N N3 . DT A 1 4 ? 1.662 -0.480 10.035 1.00 16.85 ? 4 DT A N3 1
ATOM 75 C C4 . DT A 1 4 ? 1.706 -1.288 8.925 1.00 16.33 ? 4 DT A C4 1
ATOM 76 O O4 . DT A 1 4 ? 1.640 -2.493 9.070 1.00 17.42 ? 4 DT A O4 1
ATOM 77 C C5 . DT A 1 4 ? 1.833 -0.626 7.641 1.00 16.84 ? 4 DT A C5 1
ATOM 78 C C7 . DT A 1 4 ? 1.615 -1.389 6.359 1.00 17.93 ? 4 DT A C7 1
ATOM 79 C C6 . DT A 1 4 ? 1.916 0.720 7.641 1.00 15.82 ? 4 DT A C6 1
ATOM 80 P P . DG A 1 5 ? 3.800 7.113 8.345 1.00 18.35 ? 5 DG A P 1
ATOM 81 O OP1 . DG A 1 5 ? 3.805 7.782 9.631 1.00 20.29 ? 5 DG A OP1 1
ATOM 82 O OP2 . DG A 1 5 ? 3.010 7.685 7.265 1.00 17.76 ? 5 DG A OP2 1
ATOM 83 O "O5'" . DG A 1 5 ? 5.319 6.960 7.916 1.00 19.97 ? 5 DG A "O5'" 1
ATOM 84 C "C5'" . DG A 1 5 ? 6.367 6.501 8.723 1.00 18.24 ? 5 DG A "C5'" 1
ATOM 85 C "C4'" . DG A 1 5 ? 7.655 7.062 8.155 1.00 16.97 ? 5 DG A "C4'" 1
ATOM 86 O "O4'" . DG A 1 5 ? 7.825 6.681 6.765 1.00 16.91 ? 5 DG A "O4'" 1
ATOM 87 C "C3'" . DG A 1 5 ? 7.812 8.579 8.167 1.00 16.06 ? 5 DG A "C3'" 1
ATOM 88 O "O3'" . DG A 1 5 ? 9.207 8.802 8.370 1.00 19.01 ? 5 DG A "O3'" 1
ATOM 89 C "C2'" . DG A 1 5 ? 7.340 9.024 6.784 1.00 15.46 ? 5 DG A "C2'" 1
ATOM 90 C "C1'" . DG A 1 5 ? 7.832 7.864 5.931 1.00 16.70 ? 5 DG A "C1'" 1
ATOM 91 N N9 . DG A 1 5 ? 6.962 7.497 4.811 1.00 15.66 ? 5 DG A N9 1
ATOM 92 C C8 . DG A 1 5 ? 5.595 7.493 4.838 1.00 13.93 ? 5 DG A C8 1
ATOM 93 N N7 . DG A 1 5 ? 5.057 7.070 3.755 1.00 13.92 ? 5 DG A N7 1
ATOM 94 C C5 . DG A 1 5 ? 6.124 6.769 2.918 1.00 15.35 ? 5 DG A C5 1
ATOM 95 C C6 . DG A 1 5 ? 6.153 6.259 1.581 1.00 15.43 ? 5 DG A C6 1
ATOM 96 O O6 . DG A 1 5 ? 5.230 5.959 0.830 1.00 15.70 ? 5 DG A O6 1
ATOM 97 N N1 . DG A 1 5 ? 7.446 6.086 1.097 1.00 13.62 ? 5 DG A N1 1
ATOM 98 C C2 . DG A 1 5 ? 8.555 6.353 1.838 1.00 15.95 ? 5 DG A C2 1
ATOM 99 N N2 . DG A 1 5 ? 9.686 6.119 1.184 1.00 15.88 ? 5 DG A N2 1
ATOM 100 N N3 . DG A 1 5 ? 8.567 6.825 3.085 1.00 14.50 ? 5 DG A N3 1
ATOM 101 C C4 . DG A 1 5 ? 7.316 7.012 3.566 1.00 15.93 ? 5 DG A C4 1
ATOM 102 P P . DC A 1 6 ? 9.750 10.201 8.873 1.00 20.51 ? 6 DC A P 1
ATOM 103 O OP1 . DC A 1 6 ? 10.685 9.848 9.967 1.00 23.62 ? 6 DC A OP1 1
ATOM 104 O OP2 . DC A 1 6 ? 8.592 11.079 9.048 1.00 19.73 ? 6 DC A OP2 1
ATOM 105 O "O5'" . DC A 1 6 ? 10.523 10.797 7.616 1.00 23.28 ? 6 DC A "O5'" 1
ATOM 106 C "C5'" . DC A 1 6 ? 11.605 10.109 7.005 1.00 21.50 ? 6 DC A "C5'" 1
ATOM 107 C "C4'" . DC A 1 6 ? 11.707 10.460 5.544 1.00 20.07 ? 6 DC A "C4'" 1
ATOM 108 O "O4'" . DC A 1 6 ? 10.572 9.928 4.828 1.00 19.93 ? 6 DC A "O4'" 1
ATOM 109 C "C3'" . DC A 1 6 ? 11.698 11.959 5.298 1.00 21.04 ? 6 DC A "C3'" 1
ATOM 110 O "O3'" . DC A 1 6 ? 12.904 12.312 4.654 1.00 22.52 ? 6 DC A "O3'" 1
ATOM 111 C "C2'" . DC A 1 6 ? 10.515 12.223 4.369 1.00 20.33 ? 6 DC A "C2'" 1
ATOM 112 C "C1'" . DC A 1 6 ? 10.308 10.833 3.767 1.00 19.56 ? 6 DC A "C1'" 1
ATOM 113 N N1 . DC A 1 6 ? 8.941 10.569 3.206 1.00 18.82 ? 6 DC A N1 1
ATOM 114 C C2 . DC A 1 6 ? 8.797 10.012 1.906 1.00 15.98 ? 6 DC A C2 1
ATOM 115 O O2 . DC A 1 6 ? 9.792 9.723 1.232 1.00 16.79 ? 6 DC A O2 1
ATOM 116 N N3 . DC A 1 6 ? 7.548 9.781 1.439 1.00 14.67 ? 6 DC A N3 1
ATOM 117 C C4 . DC A 1 6 ? 6.481 10.098 2.179 1.00 14.47 ? 6 DC A C4 1
ATOM 118 N N4 . DC A 1 6 ? 5.282 9.838 1.677 1.00 15.78 ? 6 DC A N4 1
ATOM 119 C C5 . DC A 1 6 ? 6.595 10.682 3.480 1.00 13.49 ? 6 DC A C5 1
ATOM 120 C C6 . DC A 1 6 ? 7.834 10.903 3.950 1.00 15.28 ? 6 DC A C6 1
ATOM 121 P P . DT A 1 7 ? 13.762 13.567 5.110 1.00 22.55 ? 7 DT A P 1
ATOM 122 O OP1 . DT A 1 7 ? 13.613 13.686 6.570 1.00 23.47 ? 7 DT A OP1 1
ATOM 123 O OP2 . DT A 1 7 ? 13.503 14.643 4.166 1.00 22.37 ? 7 DT A OP2 1
ATOM 124 O "O5'" . DT A 1 7 ? 15.233 13.036 4.871 1.00 23.50 ? 7 DT A "O5'" 1
ATOM 125 C "C5'" . DT A 1 7 ? 15.762 11.908 5.528 1.00 23.47 ? 7 DT A "C5'" 1
ATOM 126 C "C4'" . DT A 1 7 ? 16.977 11.482 4.739 1.00 26.37 ? 7 DT A "C4'" 1
ATOM 127 O "O4'" . DT A 1 7 ? 16.519 11.165 3.421 1.00 27.53 ? 7 DT A "O4'" 1
ATOM 128 C "C3'" . DT A 1 7 ? 17.993 12.592 4.519 1.00 28.72 ? 7 DT A "C3'" 1
ATOM 129 O "O3'" . DT A 1 7 ? 19.075 12.343 5.391 1.00 32.12 ? 7 DT A "O3'" 1
ATOM 130 C "C2'" . DT A 1 7 ? 18.403 12.519 3.047 1.00 28.39 ? 7 DT A "C2'" 1
ATOM 131 C "C1'" . DT A 1 7 ? 17.404 11.563 2.403 1.00 25.75 ? 7 DT A "C1'" 1
ATOM 132 N N1 . DT A 1 7 ? 16.529 12.112 1.334 1.00 24.91 ? 7 DT A N1 1
ATOM 133 C C2 . DT A 1 7 ? 17.060 12.595 0.151 1.00 25.24 ? 7 DT A C2 1
ATOM 134 O O2 . DT A 1 7 ? 18.249 12.619 -0.090 1.00 28.17 ? 7 DT A O2 1
ATOM 135 N N3 . DT A 1 7 ? 16.158 13.088 -0.758 1.00 23.54 ? 7 DT A N3 1
ATOM 136 C C4 . DT A 1 7 ? 14.786 13.119 -0.612 1.00 25.57 ? 7 DT A C4 1
ATOM 137 O O4 . DT A 1 7 ? 14.061 13.573 -1.490 1.00 25.81 ? 7 DT A O4 1
ATOM 138 C C5 . DT A 1 7 ? 14.269 12.596 0.645 1.00 25.17 ? 7 DT A C5 1
ATOM 139 C C7 . DT A 1 7 ? 12.855 12.866 1.055 1.00 24.55 ? 7 DT A C7 1
ATOM 140 C C6 . DT A 1 7 ? 15.158 12.116 1.530 1.00 25.25 ? 7 DT A C6 1
HETATM 141 K K . K B 2 . ? 11.541 7.907 12.005 0.50 33.81 ? 8 K A K 1
HETATM 142 CA CA . CA C 3 . ? -0.003 0.067 0.000 0.25 18.66 ? 9 CA A CA 1
HETATM 143 O O . HOH D 4 . ? 11.371 0.000 4.251 0.50 8.15 ? 101 HOH A O 1
HETATM 144 O O . HOH D 4 . ? 8.457 7.809 11.459 1.00 17.38 ? 102 HOH A O 1
HETATM 145 O O . HOH D 4 . ? 0.000 0.000 -2.465 0.50 10.77 ? 103 HOH A O 1
HETATM 146 O O . HOH D 4 . ? 7.920 -1.011 4.909 1.00 11.65 ? 104 HOH A O 1
HETATM 147 O O . HOH D 4 . ? 3.762 2.275 -0.367 1.00 13.37 ? 105 HOH A O 1
HETATM 148 O O . HOH D 4 . ? 0.031 2.275 0.020 0.50 16.89 ? 106 HOH A O 1
HETATM 149 O O . HOH D 4 . ? 2.610 -0.242 -0.296 0.50 18.18 ? 107 HOH A O 1
HETATM 150 O O . HOH D 4 . ? 5.206 -1.217 5.464 1.00 18.64 ? 108 HOH A O 1
HETATM 151 O O . HOH D 4 . ? 3.713 -0.908 3.673 1.00 21.27 ? 109 HOH A O 1
HETATM 152 O O . HOH D 4 . ? 11.309 2.122 9.432 1.00 20.13 ? 110 HOH A O 1
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