data_3OVL
#
_entry.id 3OVL
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3OVL pdb_00003ovl 10.2210/pdb3ovl/pdb
RCSB RCSB061628 ? ?
WWPDB D_1000061628 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-07-06
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' pdbx_struct_conn_angle
5 3 'Structure model' struct_conn
6 3 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id'
10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
17 3 'Structure model' '_pdbx_struct_conn_angle.value'
18 3 'Structure model' '_struct_conn.pdbx_dist_value'
19 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
20 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
21 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
22 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
23 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
24 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'
25 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
26 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
27 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
28 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
29 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
30 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
31 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
32 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.entry_id 3OVL
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2010-09-16
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 2ON9 'APO VQIVYK' unspecified
PDB 3FQP 'APO VQIVYK (alternate polymorph)' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Landau, M.' 1
'Eisenberg, D.' 2
#
_citation.id primary
_citation.title 'Towards a pharmacophore for amyloid.'
_citation.journal_abbrev 'Plos Biol.'
_citation.journal_volume 9
_citation.page_first e1001080
_citation.page_last e1001080
_citation.year 2011
_citation.journal_id_ASTM ?
_citation.country US
_citation.journal_id_ISSN 1544-9173
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 21695112
_citation.pdbx_database_id_DOI 10.1371/journal.pbio.1001080
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Landau, M.' 1 ?
primary 'Sawaya, M.R.' 2 ?
primary 'Faull, K.F.' 3 ?
primary 'Laganowsky, A.' 4 ?
primary 'Jiang, L.' 5 ?
primary 'Sievers, S.A.' 6 ?
primary 'Liu, J.' 7 ?
primary 'Barrio, J.R.' 8 ?
primary 'Eisenberg, D.' 9 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Microtubule-associated protein' 749.917 1 ? ? 'VQIVYK (residues 306-311)' ?
2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ?
3 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ?
4 non-polymer syn '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' 408.406 1 ? ? ? ?
5 water nat water 18.015 2 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code VQIVYK
_entity_poly.pdbx_seq_one_letter_code_can VQIVYK
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'ZINC ION' ZN
3 'ACETIC ACID' ACY
4 '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' ORA
5 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 VAL n
1 2 GLN n
1 3 ILE n
1 4 VAL n
1 5 TYR n
1 6 LYS n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'VQIVYK (residues 306-311) from Tau, synthesized'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
ORA non-polymer . '7-hydroxy-8-[(E)-phenyldiazenyl]naphthalene-1,3-disulfonic acid' 'Orange G' 'C16 H12 N2 O7 S2' 408.406
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 VAL 1 1 1 VAL VAL A . n
A 1 2 GLN 2 2 2 GLN GLN A . n
A 1 3 ILE 3 3 3 ILE ILE A . n
A 1 4 VAL 4 4 4 VAL VAL A . n
A 1 5 TYR 5 5 5 TYR TYR A . n
A 1 6 LYS 6 6 6 LYS LYS A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN 1 7 2 ZN ZN A .
C 2 ZN 1 8 1 ZN ZN A .
D 3 ACY 1 9 1 ACY ACY A .
E 4 ORA 1 79 79 ORA ORA A .
F 5 HOH 1 10 1 HOH HOH A .
F 5 HOH 2 11 2 HOH HOH A .
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
5 ADSC Quantum ? ? ? ? 'data collection' ? ? ?
6 DENZO . ? ? ? ? 'data reduction' ? ? ?
#
_cell.length_a 55.056
_cell.length_b 4.831
_cell.length_c 22.127
_cell.angle_alpha 90.000
_cell.angle_beta 102.980
_cell.angle_gamma 90.000
_cell.entry_id 3OVL
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.entry_id 3OVL
_symmetry.Int_Tables_number 5
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 3OVL
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.91
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 35.66
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.temp 291
_exptl_crystal_grow.pdbx_details
'reservoir contained 0.1M Zinc Acetate dihydrate, 18% PEG 3350, vapor diffusion, hanging drop, temperature 291K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.pdbx_collection_date 2008-11-17
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9792
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 24-ID-E'
_diffrn_source.pdbx_wavelength_list 0.9792
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 24-ID-E
#
_reflns.entry_id 3OVL
_reflns.d_resolution_high 1.800
_reflns.d_resolution_low 90.000
_reflns.number_obs 587
_reflns.pdbx_Rmerge_I_obs 0.179
_reflns.pdbx_netI_over_sigmaI 4.500
_reflns.pdbx_chi_squared 1.071
_reflns.pdbx_redundancy 2.400
_reflns.percent_possible_obs 87.600
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I -3
_reflns.number_all 587
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate 19.9
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.800 1.940 ? ? ? 0.433 ? ? 1.077 1.400 ? 88 71.000 1 1
1.940 2.130 ? ? ? 0.281 ? ? 1.081 1.600 ? 106 79.100 2 1
2.130 2.440 ? ? ? 0.475 ? ? 1.050 2.700 ? 128 90.100 3 1
2.440 3.080 ? ? ? 0.350 ? ? 1.065 3.100 ? 112 99.100 4 1
3.080 90.000 ? ? ? 0.163 ? ? 1.088 2.900 ? 153 97.500 5 1
#
_refine.entry_id 3OVL
_refine.ls_d_res_high 1.8100
_refine.ls_d_res_low 26.8200
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 87.9900
_refine.ls_number_reflns_obs 586
_refine.ls_number_reflns_all 586
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details
'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY'
_refine.ls_R_factor_all 0.2589
_refine.ls_R_factor_obs 0.2589
_refine.ls_R_factor_R_work 0.2589
_refine.ls_wR_factor_R_work 0.2514
_refine.ls_R_factor_R_free 0.2590
_refine.ls_wR_factor_R_free 0.3060
_refine.ls_percent_reflns_R_free 10.4000
_refine.ls_number_reflns_R_free 61
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 20.2828
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] -0.6600
_refine.aniso_B[2][2] -0.7000
_refine.aniso_B[3][3] 1.2600
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] -0.2400
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc 0.9180
_refine.correlation_coeff_Fo_to_Fc_free 0.9640
_refine.overall_SU_R_Cruickshank_DPI 0.3608
_refine.overall_SU_R_free 0.2072
_refine.pdbx_overall_ESU_R_Free 0.2070
_refine.overall_SU_ML 0.1630
_refine.overall_SU_B 5.9190
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.4000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set 0.7697
_refine.B_iso_max 36.920
_refine.B_iso_min 6.300
_refine.occupancy_max 1.000
_refine.occupancy_min 0.250
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 53
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 33
_refine_hist.number_atoms_solvent 2
_refine_hist.number_atoms_total 88
_refine_hist.d_res_high 1.8100
_refine_hist.d_res_low 26.8200
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 85 0.011 0.022 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 44 0.005 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 118 1.220 2.402 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 104 0.627 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5 6.501 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 2 39.537 25.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 11 8.441 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 11 0.080 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 80 0.003 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 18 0.000 0.020 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 33 1.089 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 11 0.410 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 52 1.640 2.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 52 2.252 3.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 66 3.319 4.500 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.8050
_refine_ls_shell.d_res_low 2.0170
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.percent_reflns_obs 76.3700
_refine_ls_shell.number_reflns_R_work 118
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.3770
_refine_ls_shell.R_factor_R_free 0.4480
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 21
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 139
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3OVL
_struct.title 'Structure of an amyloid forming peptide VQIVYK from the TAU protein in complex with orange G'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3OVL
_struct_keywords.text 'amyloid-like protofibril in complex with a small-molecule binder, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
E N N 4 ?
F N N 5 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code TAU_HUMAN
_struct_ref.pdbx_db_accession P10636
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code VQIVYK
_struct_ref.pdbx_align_begin 623
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3OVL
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P10636
_struct_ref_seq.db_align_beg 623
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 628
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details hexameric
_pdbx_struct_assembly.oligomeric_count 6
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.8310000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.6620000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 4_455 -x-1/2,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 -27.5280000000 0.0000000000
1.0000000000 0.0000000000 2.4155000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
5 'crystal symmetry operation' 4_465 -x-1/2,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 -27.5280000000 0.0000000000
1.0000000000 0.0000000000 7.2465000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
6 'crystal symmetry operation' 4_475 -x-1/2,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 -27.5280000000 0.0000000000
1.0000000000 0.0000000000 12.0775000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
_struct_biol.id 1
_struct_biol.details
;The biological unit is a pair of beta sheets with orange G interrelating between two pairs of sheets. One sheet is constructed from chain A and unit cell translations along the b direction (i.e. X,Y+1,Z; X,Y+2,Z; X,Y+3,Z, etc.). The second sheet is constructed from -X-1/2,1/2+Y,-Z;-X-1/2,3/2+Y,-Z;-X-1/2,5/2+Y,-Z; etc. The other pairs of sheets will be contracted from -X,Y,-Z+1, -X,Y+1,-Z+1,-X,Y+2,-Z+1; etc. and from X+1/2,1/2+Y,Z+1, X+1/2,3/2+Y,Z+1, X+1/2,5/2+Y,Z+1; etc.
;
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? A LYS 6 NZ ? ? ? 1_555 B ZN . ZN ? ? A LYS 6 A ZN 7 1_555 ? ? ? ? ? ? ? 2.692 ? ?
metalc2 metalc ? ? A LYS 6 O ? ? ? 1_555 C ZN . ZN ? ? A LYS 6 A ZN 8 1_555 ? ? ? ? ? ? ? 2.013 ? ?
metalc3 metalc ? ? B ZN . ZN ? ? ? 1_555 E ORA . O4 ? ? A ZN 7 A ORA 79 1_555 ? ? ? ? ? ? ? 2.258 ? ?
metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 E ORA . S1 ? ? A ZN 7 A ORA 79 1_555 ? ? ? ? ? ? ? 2.897 ? ?
metalc5 metalc ? ? C ZN . ZN ? ? ? 1_555 D ACY . OXT ? ? A ZN 8 A ACY 9 1_555 ? ? ? ? ? ? ? 1.884 ? ?
#
_struct_conn_type.id metalc
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 NZ ? A LYS 6 ? A LYS 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 O4 ? E ORA . ? A ORA 79 ? 1_555 89.8 ?
2 NZ ? A LYS 6 ? A LYS 6 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 S1 ? E ORA . ? A ORA 79 ? 1_555 111.1 ?
3 O4 ? E ORA . ? A ORA 79 ? 1_555 ZN ? B ZN . ? A ZN 7 ? 1_555 S1 ? E ORA . ? A ORA 79 ? 1_555 30.0 ?
4 O ? A LYS 6 ? A LYS 6 ? 1_555 ZN ? C ZN . ? A ZN 8 ? 1_555 OXT ? D ACY . ? A ACY 9 ? 1_555 103.0 ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A ZN 7 ? 10 'BINDING SITE FOR RESIDUE ZN A 7'
AC2 Software A ZN 8 ? 4 'BINDING SITE FOR RESIDUE ZN A 8'
AC3 Software A ACY 9 ? 6 'BINDING SITE FOR RESIDUE ACY A 9'
AC4 Software A ORA 79 ? 17 'BINDING SITE FOR RESIDUE ORA A 79'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 10 LYS A 6 ? LYS A 6 . ? 1_545 ?
2 AC1 10 LYS A 6 ? LYS A 6 . ? 1_555 ?
3 AC1 10 LYS A 6 ? LYS A 6 . ? 2_556 ?
4 AC1 10 LYS A 6 ? LYS A 6 . ? 2_546 ?
5 AC1 10 ORA E . ? ORA A 79 . ? 1_565 ?
6 AC1 10 ORA E . ? ORA A 79 . ? 2_556 ?
7 AC1 10 ORA E . ? ORA A 79 . ? 2_546 ?
8 AC1 10 ORA E . ? ORA A 79 . ? 2_566 ?
9 AC1 10 ORA E . ? ORA A 79 . ? 1_555 ?
10 AC1 10 ORA E . ? ORA A 79 . ? 1_545 ?
11 AC2 4 VAL A 1 ? VAL A 1 . ? 1_556 ?
12 AC2 4 LYS A 6 ? LYS A 6 . ? 1_555 ?
13 AC2 4 ACY D . ? ACY A 9 . ? 1_555 ?
14 AC2 4 ACY D . ? ACY A 9 . ? 1_545 ?
15 AC3 6 VAL A 1 ? VAL A 1 . ? 1_566 ?
16 AC3 6 VAL A 1 ? VAL A 1 . ? 1_556 ?
17 AC3 6 LYS A 6 ? LYS A 6 . ? 1_565 ?
18 AC3 6 LYS A 6 ? LYS A 6 . ? 1_555 ?
19 AC3 6 ZN C . ? ZN A 8 . ? 1_565 ?
20 AC3 6 ZN C . ? ZN A 8 . ? 1_555 ?
21 AC4 17 GLN A 2 ? GLN A 2 . ? 1_565 ?
22 AC4 17 GLN A 2 ? GLN A 2 . ? 1_575 ?
23 AC4 17 GLN A 2 ? GLN A 2 . ? 1_555 ?
24 AC4 17 VAL A 4 ? VAL A 4 . ? 1_565 ?
25 AC4 17 VAL A 4 ? VAL A 4 . ? 1_555 ?
26 AC4 17 VAL A 4 ? VAL A 4 . ? 1_545 ?
27 AC4 17 LYS A 6 ? LYS A 6 . ? 1_555 ?
28 AC4 17 LYS A 6 ? LYS A 6 . ? 2_556 ?
29 AC4 17 LYS A 6 ? LYS A 6 . ? 2_566 ?
30 AC4 17 LYS A 6 ? LYS A 6 . ? 1_545 ?
31 AC4 17 LYS A 6 ? LYS A 6 . ? 2_546 ?
32 AC4 17 ZN B . ? ZN A 7 . ? 2_546 ?
33 AC4 17 ZN B . ? ZN A 7 . ? 1_545 ?
34 AC4 17 ZN B . ? ZN A 7 . ? 2_556 ?
35 AC4 17 ZN B . ? ZN A 7 . ? 1_555 ?
36 AC4 17 ZN B . ? ZN A 7 . ? 2_566 ?
37 AC4 17 ZN B . ? ZN A 7 . ? 1_565 ?
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id ZN
_pdbx_struct_special_symmetry.auth_seq_id 7
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id B
_pdbx_struct_special_symmetry.label_comp_id ZN
_pdbx_struct_special_symmetry.label_seq_id .
#
_pdbx_phasing_MR.entry_id 3OVL
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 1.800
_pdbx_phasing_MR.d_res_low_rotation 26.820
_pdbx_phasing_MR.d_res_high_translation 1.800
_pdbx_phasing_MR.d_res_low_translation 26.820
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ACY C C N N 1
ACY O O N N 2
ACY OXT O N N 3
ACY CH3 C N N 4
ACY HXT H N N 5
ACY H1 H N N 6
ACY H2 H N N 7
ACY H3 H N N 8
GLN N N N N 9
GLN CA C N S 10
GLN C C N N 11
GLN O O N N 12
GLN CB C N N 13
GLN CG C N N 14
GLN CD C N N 15
GLN OE1 O N N 16
GLN NE2 N N N 17
GLN OXT O N N 18
GLN H H N N 19
GLN H2 H N N 20
GLN HA H N N 21
GLN HB2 H N N 22
GLN HB3 H N N 23
GLN HG2 H N N 24
GLN HG3 H N N 25
GLN HE21 H N N 26
GLN HE22 H N N 27
GLN HXT H N N 28
HOH O O N N 29
HOH H1 H N N 30
HOH H2 H N N 31
ILE N N N N 32
ILE CA C N S 33
ILE C C N N 34
ILE O O N N 35
ILE CB C N S 36
ILE CG1 C N N 37
ILE CG2 C N N 38
ILE CD1 C N N 39
ILE OXT O N N 40
ILE H H N N 41
ILE H2 H N N 42
ILE HA H N N 43
ILE HB H N N 44
ILE HG12 H N N 45
ILE HG13 H N N 46
ILE HG21 H N N 47
ILE HG22 H N N 48
ILE HG23 H N N 49
ILE HD11 H N N 50
ILE HD12 H N N 51
ILE HD13 H N N 52
ILE HXT H N N 53
LYS N N N N 54
LYS CA C N S 55
LYS C C N N 56
LYS O O N N 57
LYS CB C N N 58
LYS CG C N N 59
LYS CD C N N 60
LYS CE C N N 61
LYS NZ N N N 62
LYS OXT O N N 63
LYS H H N N 64
LYS H2 H N N 65
LYS HA H N N 66
LYS HB2 H N N 67
LYS HB3 H N N 68
LYS HG2 H N N 69
LYS HG3 H N N 70
LYS HD2 H N N 71
LYS HD3 H N N 72
LYS HE2 H N N 73
LYS HE3 H N N 74
LYS HZ1 H N N 75
LYS HZ2 H N N 76
LYS HZ3 H N N 77
LYS HXT H N N 78
ORA C1 C Y N 79
ORA N1 N N N 80
ORA O1 O N N 81
ORA S1 S N N 82
ORA C2 C Y N 83
ORA N2 N N N 84
ORA O2 O N N 85
ORA S2 S N N 86
ORA C3 C Y N 87
ORA O3 O N N 88
ORA C4 C Y N 89
ORA O4 O N N 90
ORA C5 C Y N 91
ORA O5 O N N 92
ORA C6 C Y N 93
ORA O6 O N N 94
ORA C7 C Y N 95
ORA O7 O N N 96
ORA C8 C Y N 97
ORA C9 C Y N 98
ORA C10 C Y N 99
ORA C11 C Y N 100
ORA C12 C Y N 101
ORA C13 C Y N 102
ORA C14 C Y N 103
ORA C15 C Y N 104
ORA C16 C Y N 105
ORA H1 H N N 106
ORA H2 H N N 107
ORA H3 H N N 108
ORA H4 H N N 109
ORA H5 H N N 110
ORA H6 H N N 111
ORA H7 H N N 112
ORA HO7 H N N 113
ORA H8 H N N 114
ORA H9 H N N 115
ORA H11 H N N 116
ORA H12 H N N 117
TYR N N N N 118
TYR CA C N S 119
TYR C C N N 120
TYR O O N N 121
TYR CB C N N 122
TYR CG C Y N 123
TYR CD1 C Y N 124
TYR CD2 C Y N 125
TYR CE1 C Y N 126
TYR CE2 C Y N 127
TYR CZ C Y N 128
TYR OH O N N 129
TYR OXT O N N 130
TYR H H N N 131
TYR H2 H N N 132
TYR HA H N N 133
TYR HB2 H N N 134
TYR HB3 H N N 135
TYR HD1 H N N 136
TYR HD2 H N N 137
TYR HE1 H N N 138
TYR HE2 H N N 139
TYR HH H N N 140
TYR HXT H N N 141
VAL N N N N 142
VAL CA C N S 143
VAL C C N N 144
VAL O O N N 145
VAL CB C N N 146
VAL CG1 C N N 147
VAL CG2 C N N 148
VAL OXT O N N 149
VAL H H N N 150
VAL H2 H N N 151
VAL HA H N N 152
VAL HB H N N 153
VAL HG11 H N N 154
VAL HG12 H N N 155
VAL HG13 H N N 156
VAL HG21 H N N 157
VAL HG22 H N N 158
VAL HG23 H N N 159
VAL HXT H N N 160
ZN ZN ZN N N 161
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ACY C O doub N N 1
ACY C OXT sing N N 2
ACY C CH3 sing N N 3
ACY OXT HXT sing N N 4
ACY CH3 H1 sing N N 5
ACY CH3 H2 sing N N 6
ACY CH3 H3 sing N N 7
GLN N CA sing N N 8
GLN N H sing N N 9
GLN N H2 sing N N 10
GLN CA C sing N N 11
GLN CA CB sing N N 12
GLN CA HA sing N N 13
GLN C O doub N N 14
GLN C OXT sing N N 15
GLN CB CG sing N N 16
GLN CB HB2 sing N N 17
GLN CB HB3 sing N N 18
GLN CG CD sing N N 19
GLN CG HG2 sing N N 20
GLN CG HG3 sing N N 21
GLN CD OE1 doub N N 22
GLN CD NE2 sing N N 23
GLN NE2 HE21 sing N N 24
GLN NE2 HE22 sing N N 25
GLN OXT HXT sing N N 26
HOH O H1 sing N N 27
HOH O H2 sing N N 28
ILE N CA sing N N 29
ILE N H sing N N 30
ILE N H2 sing N N 31
ILE CA C sing N N 32
ILE CA CB sing N N 33
ILE CA HA sing N N 34
ILE C O doub N N 35
ILE C OXT sing N N 36
ILE CB CG1 sing N N 37
ILE CB CG2 sing N N 38
ILE CB HB sing N N 39
ILE CG1 CD1 sing N N 40
ILE CG1 HG12 sing N N 41
ILE CG1 HG13 sing N N 42
ILE CG2 HG21 sing N N 43
ILE CG2 HG22 sing N N 44
ILE CG2 HG23 sing N N 45
ILE CD1 HD11 sing N N 46
ILE CD1 HD12 sing N N 47
ILE CD1 HD13 sing N N 48
ILE OXT HXT sing N N 49
LYS N CA sing N N 50
LYS N H sing N N 51
LYS N H2 sing N N 52
LYS CA C sing N N 53
LYS CA CB sing N N 54
LYS CA HA sing N N 55
LYS C O doub N N 56
LYS C OXT sing N N 57
LYS CB CG sing N N 58
LYS CB HB2 sing N N 59
LYS CB HB3 sing N N 60
LYS CG CD sing N N 61
LYS CG HG2 sing N N 62
LYS CG HG3 sing N N 63
LYS CD CE sing N N 64
LYS CD HD2 sing N N 65
LYS CD HD3 sing N N 66
LYS CE NZ sing N N 67
LYS CE HE2 sing N N 68
LYS CE HE3 sing N N 69
LYS NZ HZ1 sing N N 70
LYS NZ HZ2 sing N N 71
LYS NZ HZ3 sing N N 72
LYS OXT HXT sing N N 73
ORA C1 C2 doub Y N 74
ORA C1 C3 sing Y N 75
ORA C1 H1 sing N N 76
ORA N1 N2 doub N N 77
ORA N1 C12 sing N N 78
ORA O1 S1 sing N N 79
ORA S1 O3 doub N N 80
ORA S1 O4 doub N N 81
ORA S1 C15 sing N N 82
ORA C2 C5 sing Y N 83
ORA C2 H2 sing N N 84
ORA N2 C13 sing N N 85
ORA O2 S2 sing N N 86
ORA S2 O5 doub N N 87
ORA S2 O6 doub N N 88
ORA S2 C16 sing N N 89
ORA C3 C6 doub Y N 90
ORA C3 H3 sing N N 91
ORA C4 C7 doub Y N 92
ORA C4 C10 sing Y N 93
ORA C4 H4 sing N N 94
ORA C5 C12 doub Y N 95
ORA C5 H5 sing N N 96
ORA C6 C12 sing Y N 97
ORA C6 H6 sing N N 98
ORA C7 C14 sing Y N 99
ORA C7 H7 sing N N 100
ORA O7 C14 sing N N 101
ORA O7 HO7 sing N N 102
ORA C8 C10 doub Y N 103
ORA C8 C15 sing Y N 104
ORA C8 H8 sing N N 105
ORA C9 C15 doub Y N 106
ORA C9 C16 sing Y N 107
ORA C9 H9 sing N N 108
ORA C10 C11 sing Y N 109
ORA C11 C13 sing Y N 110
ORA C11 C16 doub Y N 111
ORA C13 C14 doub Y N 112
ORA O1 H11 sing N N 113
ORA O2 H12 sing N N 114
TYR N CA sing N N 115
TYR N H sing N N 116
TYR N H2 sing N N 117
TYR CA C sing N N 118
TYR CA CB sing N N 119
TYR CA HA sing N N 120
TYR C O doub N N 121
TYR C OXT sing N N 122
TYR CB CG sing N N 123
TYR CB HB2 sing N N 124
TYR CB HB3 sing N N 125
TYR CG CD1 doub Y N 126
TYR CG CD2 sing Y N 127
TYR CD1 CE1 sing Y N 128
TYR CD1 HD1 sing N N 129
TYR CD2 CE2 doub Y N 130
TYR CD2 HD2 sing N N 131
TYR CE1 CZ doub Y N 132
TYR CE1 HE1 sing N N 133
TYR CE2 CZ sing Y N 134
TYR CE2 HE2 sing N N 135
TYR CZ OH sing N N 136
TYR OH HH sing N N 137
TYR OXT HXT sing N N 138
VAL N CA sing N N 139
VAL N H sing N N 140
VAL N H2 sing N N 141
VAL CA C sing N N 142
VAL CA CB sing N N 143
VAL CA HA sing N N 144
VAL C O doub N N 145
VAL C OXT sing N N 146
VAL CB CG1 sing N N 147
VAL CB CG2 sing N N 148
VAL CB HB sing N N 149
VAL CG1 HG11 sing N N 150
VAL CG1 HG12 sing N N 151
VAL CG1 HG13 sing N N 152
VAL CG2 HG21 sing N N 153
VAL CG2 HG22 sing N N 154
VAL CG2 HG23 sing N N 155
VAL OXT HXT sing N N 156
#
_atom_sites.entry_id 3OVL
_atom_sites.fract_transf_matrix[1][1] 0.018163
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.004187
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.206996
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.046379
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
S
ZN
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . VAL A 1 1 ? -7.955 0.074 -3.743 1.00 13.14 ? 1 VAL A N 1
ATOM 2 C CA . VAL A 1 1 ? -8.833 0.532 -2.629 1.00 13.01 ? 1 VAL A CA 1
ATOM 3 C C . VAL A 1 1 ? -8.405 -0.121 -1.289 1.00 13.33 ? 1 VAL A C 1
ATOM 4 O O . VAL A 1 1 ? -8.354 -1.351 -1.185 1.00 15.52 ? 1 VAL A O 1
ATOM 5 C CB . VAL A 1 1 ? -10.319 0.219 -2.957 1.00 12.07 ? 1 VAL A CB 1
ATOM 6 C CG1 . VAL A 1 1 ? -11.240 0.586 -1.817 1.00 12.46 ? 1 VAL A CG1 1
ATOM 7 C CG2 . VAL A 1 1 ? -10.730 0.946 -4.188 1.00 10.08 ? 1 VAL A CG2 1
ATOM 8 N N . GLN A 1 2 ? -8.100 0.695 -0.275 1.00 13.68 ? 2 GLN A N 1
ATOM 9 C CA . GLN A 1 2 ? -7.886 0.194 1.106 1.00 12.23 ? 2 GLN A CA 1
ATOM 10 C C . GLN A 1 2 ? -8.849 0.840 2.110 1.00 12.15 ? 2 GLN A C 1
ATOM 11 O O . GLN A 1 2 ? -8.869 2.069 2.234 1.00 11.46 ? 2 GLN A O 1
ATOM 12 C CB . GLN A 1 2 ? -6.443 0.445 1.560 1.00 13.05 ? 2 GLN A CB 1
ATOM 13 C CG . GLN A 1 2 ? -6.152 -0.022 2.989 1.00 13.48 ? 2 GLN A CG 1
ATOM 14 C CD . GLN A 1 2 ? -4.743 0.309 3.443 1.00 19.26 ? 2 GLN A CD 1
ATOM 15 O OE1 . GLN A 1 2 ? -3.981 -0.573 3.859 1.00 21.85 ? 2 GLN A OE1 1
ATOM 16 N NE2 . GLN A 1 2 ? -4.388 1.583 3.375 1.00 22.86 ? 2 GLN A NE2 1
ATOM 17 N N . ILE A 1 3 ? -9.611 0.013 2.836 1.00 11.10 ? 3 ILE A N 1
ATOM 18 C CA . ILE A 1 3 ? -10.513 0.474 3.908 1.00 11.69 ? 3 ILE A CA 1
ATOM 19 C C . ILE A 1 3 ? -10.130 -0.183 5.236 1.00 10.68 ? 3 ILE A C 1
ATOM 20 O O . ILE A 1 3 ? -9.963 -1.403 5.316 1.00 12.60 ? 3 ILE A O 1
ATOM 21 C CB . ILE A 1 3 ? -12.015 0.149 3.601 1.00 13.06 ? 3 ILE A CB 1
ATOM 22 C CG1 . ILE A 1 3 ? -12.404 0.574 2.181 1.00 14.22 ? 3 ILE A CG1 1
ATOM 23 C CG2 . ILE A 1 3 ? -12.958 0.800 4.615 1.00 8.87 ? 3 ILE A CG2 1
ATOM 24 C CD1 . ILE A 1 3 ? -12.130 2.011 1.868 1.00 18.25 ? 3 ILE A CD1 1
ATOM 25 N N . VAL A 1 4 ? -10.009 0.629 6.283 1.00 10.79 ? 4 VAL A N 1
ATOM 26 C CA . VAL A 1 4 ? -9.530 0.166 7.577 1.00 9.20 ? 4 VAL A CA 1
ATOM 27 C C . VAL A 1 4 ? -10.409 0.708 8.701 1.00 10.71 ? 4 VAL A C 1
ATOM 28 O O . VAL A 1 4 ? -10.548 1.926 8.848 1.00 11.39 ? 4 VAL A O 1
ATOM 29 C CB . VAL A 1 4 ? -8.090 0.680 7.852 1.00 10.48 ? 4 VAL A CB 1
ATOM 30 C CG1 . VAL A 1 4 ? -7.661 0.311 9.265 1.00 6.30 ? 4 VAL A CG1 1
ATOM 31 C CG2 . VAL A 1 4 ? -7.095 0.152 6.814 1.00 6.87 ? 4 VAL A CG2 1
ATOM 32 N N . TYR A 1 5 ? -10.987 -0.193 9.491 1.00 10.21 ? 5 TYR A N 1
ATOM 33 C CA . TYR A 1 5 ? -11.724 0.177 10.696 1.00 10.92 ? 5 TYR A CA 1
ATOM 34 C C . TYR A 1 5 ? -10.910 -0.252 11.895 1.00 11.54 ? 5 TYR A C 1
ATOM 35 O O . TYR A 1 5 ? -10.608 -1.441 12.036 1.00 11.89 ? 5 TYR A O 1
ATOM 36 C CB . TYR A 1 5 ? -13.046 -0.576 10.762 1.00 10.78 ? 5 TYR A CB 1
ATOM 37 C CG . TYR A 1 5 ? -14.058 -0.185 9.731 1.00 10.88 ? 5 TYR A CG 1
ATOM 38 C CD1 . TYR A 1 5 ? -14.994 0.802 10.003 1.00 11.13 ? 5 TYR A CD1 1
ATOM 39 C CD2 . TYR A 1 5 ? -14.095 -0.812 8.484 1.00 11.11 ? 5 TYR A CD2 1
ATOM 40 C CE1 . TYR A 1 5 ? -15.944 1.167 9.058 1.00 9.38 ? 5 TYR A CE1 1
ATOM 41 C CE2 . TYR A 1 5 ? -15.055 -0.458 7.528 1.00 12.71 ? 5 TYR A CE2 1
ATOM 42 C CZ . TYR A 1 5 ? -15.970 0.536 7.828 1.00 14.60 ? 5 TYR A CZ 1
ATOM 43 O OH . TYR A 1 5 ? -16.919 0.911 6.911 1.00 19.28 ? 5 TYR A OH 1
ATOM 44 N N . LYS A 1 6 ? -10.596 0.691 12.777 1.00 13.21 ? 6 LYS A N 1
ATOM 45 C CA . LYS A 1 6 ? -9.770 0.406 13.943 1.00 14.82 ? 6 LYS A CA 1
ATOM 46 C C . LYS A 1 6 ? -10.497 0.747 15.227 1.00 16.42 ? 6 LYS A C 1
ATOM 47 O O . LYS A 1 6 ? -9.998 0.491 16.325 1.00 15.32 ? 6 LYS A O 1
ATOM 48 C CB . LYS A 1 6 ? -8.456 1.188 13.863 1.00 16.07 ? 6 LYS A CB 1
ATOM 49 C CG . LYS A 1 6 ? -7.546 0.731 12.738 1.00 18.03 ? 6 LYS A CG 1
ATOM 50 C CD . LYS A 1 6 ? -6.316 1.615 12.628 1.00 22.58 ? 6 LYS A CD 1
ATOM 51 C CE . LYS A 1 6 ? -5.202 0.860 11.937 1.00 25.77 ? 6 LYS A CE 1
ATOM 52 N NZ . LYS A 1 6 ? -3.965 1.661 11.740 1.00 25.81 ? 6 LYS A NZ 1
ATOM 53 O OXT . LYS A 1 6 ? -11.597 1.299 15.201 1.00 16.38 ? 6 LYS A OXT 1
HETATM 54 ZN ZN . ZN B 2 . ? -2.485 -0.373 10.781 0.50 32.05 ? 7 ZN A ZN 1
HETATM 55 ZN ZN . ZN C 2 . ? -10.951 0.715 18.084 1.00 22.19 ? 8 ZN A ZN 1
HETATM 56 C C . ACY D 3 . ? -10.116 3.224 19.245 1.00 22.09 ? 9 ACY A C 1
HETATM 57 O O . ACY D 3 . ? -10.028 4.464 19.224 1.00 21.97 ? 9 ACY A O 1
HETATM 58 O OXT . ACY D 3 . ? -10.793 2.562 18.421 1.00 20.92 ? 9 ACY A OXT 1
HETATM 59 C CH3 . ACY D 3 . ? -9.361 2.506 20.327 1.00 23.36 ? 9 ACY A CH3 1
HETATM 60 C C1 . ORA E 4 . ? -2.249 8.785 6.380 0.25 36.92 ? 79 ORA A C1 1
HETATM 61 N N1 . ORA E 4 . ? -1.432 4.790 5.471 0.25 33.27 ? 79 ORA A N1 1
HETATM 62 O O1 . ORA E 4 . ? -5.113 -2.222 7.940 0.25 33.75 ? 79 ORA A O1 1
HETATM 63 S S1 . ORA E 4 . ? -3.936 -1.858 8.761 0.25 32.06 ? 79 ORA A S1 1
HETATM 64 C C2 . ORA E 4 . ? -0.995 8.446 5.839 0.25 36.47 ? 79 ORA A C2 1
HETATM 65 N N2 . ORA E 4 . ? -1.396 3.962 6.443 0.25 32.44 ? 79 ORA A N2 1
HETATM 66 O O2 . ORA E 4 . ? -4.136 3.788 7.203 0.25 30.38 ? 79 ORA A O2 1
HETATM 67 S S2 . ORA E 4 . ? -3.242 3.196 8.224 0.25 30.16 ? 79 ORA A S2 1
HETATM 68 C C3 . ORA E 4 . ? -3.230 7.794 6.616 0.25 36.11 ? 79 ORA A C3 1
HETATM 69 O O3 . ORA E 4 . ? -3.072 -3.052 8.890 0.25 32.62 ? 79 ORA A O3 1
HETATM 70 C C4 . ORA E 4 . ? -0.566 -0.169 5.524 0.25 30.05 ? 79 ORA A C4 1
HETATM 71 O O4 . ORA E 4 . ? -4.369 -1.410 10.094 0.25 29.49 ? 79 ORA A O4 1
HETATM 72 C C5 . ORA E 4 . ? -0.721 7.115 5.536 0.25 35.97 ? 79 ORA A C5 1
HETATM 73 O O5 . ORA E 4 . ? -3.956 3.153 9.520 0.25 25.49 ? 79 ORA A O5 1
HETATM 74 C C6 . ORA E 4 . ? -2.956 6.465 6.311 0.25 35.48 ? 79 ORA A C6 1
HETATM 75 O O6 . ORA E 4 . ? -2.050 4.052 8.395 0.25 29.45 ? 79 ORA A O6 1
HETATM 76 C C7 . ORA E 4 . ? 0.137 0.829 4.867 0.25 29.92 ? 79 ORA A C7 1
HETATM 77 O O7 . ORA E 4 . ? 0.601 3.120 4.481 0.25 28.58 ? 79 ORA A O7 1
HETATM 78 C C8 . ORA E 4 . ? -2.196 -0.910 7.094 0.25 31.92 ? 79 ORA A C8 1
HETATM 79 C C9 . ORA E 4 . ? -3.479 0.652 8.388 0.25 30.72 ? 79 ORA A C9 1
HETATM 80 C C10 . ORA E 4 . ? -1.531 0.141 6.474 0.25 30.63 ? 79 ORA A C10 1
HETATM 81 C C11 . ORA E 4 . ? -1.836 1.462 6.807 0.25 30.67 ? 79 ORA A C11 1
HETATM 82 C C12 . ORA E 4 . ? -1.703 6.128 5.771 0.25 35.15 ? 79 ORA A C12 1
HETATM 83 C C13 . ORA E 4 . ? -1.128 2.566 6.146 0.25 31.32 ? 79 ORA A C13 1
HETATM 84 C C14 . ORA E 4 . ? -0.110 2.164 5.144 0.25 30.13 ? 79 ORA A C14 1
HETATM 85 C C15 . ORA E 4 . ? -3.167 -0.656 8.052 0.25 31.46 ? 79 ORA A C15 1
HETATM 86 C C16 . ORA E 4 . ? -2.824 1.715 7.773 0.25 30.33 ? 79 ORA A C16 1
HETATM 87 O O . HOH F 5 . ? -13.223 2.881 15.498 1.00 28.92 ? 10 HOH A O 1
HETATM 88 O O . HOH F 5 . ? -13.963 0.984 14.133 1.00 27.77 ? 11 HOH A O 1
#