data_3NVG
#
_entry.id 3NVG
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3NVG pdb_00003nvg 10.2210/pdb3nvg/pdb
RCSB RCSB060328 ? ?
WWPDB D_1000060328 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-03-02
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2024-02-21
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.entry_id 3NVG
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2010-07-08
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3NVE 'MMHFGN hexapeptide (residues 138-143) from golden hamster prion protein' unspecified
PDB 3NVF 'IIHFGS hexapeptide (residues 138-143) from human prion protein' unspecified
PDB 3NVH 'MIHFGND peptide(residues 137-143) from mouse prion protein' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Apostol, M.I.' 1
'Sawaya, M.R.' 2
'Eisenberg, D.' 3
#
_citation.id primary
_citation.title 'Atomic structures suggest determinants of transmission barriers in Mammalian prion disease.'
_citation.journal_abbrev Biochemistry
_citation.journal_volume 50
_citation.page_first 2456
_citation.page_last 2463
_citation.year 2011
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 21323366
_citation.pdbx_database_id_DOI 10.1021/bi101803k
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Apostol, M.I.' 1 ?
primary 'Wiltzius, J.J.' 2 ?
primary 'Sawaya, M.R.' 3 ?
primary 'Cascio, D.' 4 ?
primary 'Eisenberg, D.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn 'Major prion protein' 718.844 1 ? ? ? ?
2 water nat water 18.015 2 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'PrP, PrP27-30, PrP33-35C'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code MIHFGN
_entity_poly.pdbx_seq_one_letter_code_can MIHFGN
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MET n
1 2 ILE n
1 3 HIS n
1 4 PHE n
1 5 GLY n
1 6 ASN n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'Mus musculus'
_pdbx_entity_src_syn.organism_common_name mouse
_pdbx_entity_src_syn.ncbi_taxonomy_id 10090
_pdbx_entity_src_syn.details 'MIHFGN (residues 137-142) from mouse prion'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MET 1 1 1 MET MET A . n
A 1 2 ILE 2 2 2 ILE ILE A . n
A 1 3 HIS 3 3 3 HIS HIS A . n
A 1 4 PHE 4 4 4 PHE PHE A . n
A 1 5 GLY 5 5 5 GLY GLY A . n
A 1 6 ASN 6 6 6 ASN ASN A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 7 1 HOH HOH A .
B 2 HOH 2 8 2 HOH HOH A .
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ?
2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
3 PHASER 1.3.2 'Wed Feb 15 11:59:26 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
#
_cell.length_a 27.280
_cell.length_b 4.771
_cell.length_c 31.476
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.entry_id 3NVG
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.entry_id 3NVG
_symmetry.Int_Tables_number 19
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 3NVG
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.42
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 13.67
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.pdbx_details '100mM HEPES 7.5, vapor diffusion, hanging drop, temperature 298K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 225 mm CCD'
_diffrn_detector.pdbx_collection_date 2006-11-20
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0048
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'SLS BEAMLINE X06SA'
_diffrn_source.pdbx_wavelength_list 1.0048
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site SLS
_diffrn_source.pdbx_synchrotron_beamline X06SA
#
_reflns.entry_id 3NVG
_reflns.d_resolution_high 1.48
_reflns.d_resolution_low 90.000
_reflns.number_obs 801
_reflns.pdbx_Rmerge_I_obs 0.154
_reflns.pdbx_netI_over_sigmaI 7.000
_reflns.pdbx_chi_squared 1.074
_reflns.pdbx_redundancy 5.300
_reflns.percent_possible_obs 90.900
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.number_all ?
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_ordinal
1.48 1.620 ? ? ? 0.452 ? ? 1.208 3.400 ? 130 68.800 ? 1
1.620 1.780 ? ? ? 0.324 ? ? 1.115 4.800 ? 132 95.700 ? 2
1.780 2.040 ? ? ? 0.233 ? ? 1.091 6.300 ? 158 97.500 ? 3
2.040 2.560 ? ? ? 0.176 ? ? 1.068 6.100 ? 180 94.700 ? 4
2.560 90.000 ? ? ? 0.108 ? ? 0.993 5.300 ? 201 99.500 ? 5
#
_refine.entry_id 3NVG
_refine.ls_d_res_high 1.48
_refine.ls_d_res_low 20.62
_refine.pdbx_ls_sigma_F 0.000
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 90.9600
_refine.ls_number_reflns_obs 785
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1835
_refine.ls_R_factor_R_work 0.1808
_refine.ls_wR_factor_R_work 0.1907
_refine.ls_R_factor_R_free 0.2049
_refine.ls_wR_factor_R_free 0.2215
_refine.ls_percent_reflns_R_free 11.6000
_refine.ls_number_reflns_R_free 91
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 8.4854
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] 0.4500
_refine.aniso_B[2][2] -0.6800
_refine.aniso_B[3][3] 0.2300
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc 0.9620
_refine.correlation_coeff_Fo_to_Fc_free 0.9390
_refine.overall_SU_R_Cruickshank_DPI 0.0940
_refine.overall_SU_R_free 0.0892
_refine.pdbx_overall_ESU_R_Free 0.0890
_refine.overall_SU_ML 0.0450
_refine.overall_SU_B 1.1920
_refine.solvent_model_details MASK
_refine.pdbx_solvent_vdw_probe_radii 1.4000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set 0.9018
_refine.B_iso_max 53.970
_refine.B_iso_min 3.060
_refine.occupancy_max 1.000
_refine.occupancy_min 1.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 50
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 2
_refine_hist.number_atoms_total 52
_refine_hist.d_res_high 1.48
_refine_hist.d_res_low 20.62
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 51 0.013 0.021 ? 'X-RAY DIFFRACTION' ?
r_bond_other_d 32 0.002 0.020 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 67 1.346 1.867 ? 'X-RAY DIFFRACTION' ?
r_angle_other_deg 77 0.560 3.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg 5 7.932 5.000 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg 3 42.478 23.333 ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg 8 12.239 15.000 ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 6 0.085 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 56 0.006 0.020 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_other 12 0.001 0.020 ? 'X-RAY DIFFRACTION' ?
r_mcbond_it 29 0.685 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcbond_other 12 0.154 1.500 ? 'X-RAY DIFFRACTION' ?
r_mcangle_it 45 1.356 2.000 ? 'X-RAY DIFFRACTION' ?
r_scbond_it 22 2.713 3.000 ? 'X-RAY DIFFRACTION' ?
r_scangle_it 22 4.507 4.500 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 1.48
_refine_ls_shell.d_res_low 1.6520
_refine_ls_shell.pdbx_total_number_of_bins_used 5
_refine_ls_shell.percent_reflns_obs 75.0000
_refine_ls_shell.number_reflns_R_work 159
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.2190
_refine_ls_shell.R_factor_R_free 0.2760
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 24
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 183
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3NVG
_struct.title 'MIHFGN segment 137-142 from mouse prion'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3NVG
_struct_keywords.text 'amyloid-like protofibril, PROTEIN FIBRIL'
_struct_keywords.pdbx_keywords 'PROTEIN FIBRIL'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code PRIO_MOUSE
_struct_ref.pdbx_db_accession P04925
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code MIHFGN
_struct_ref.pdbx_align_begin 137
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3NVG
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P04925
_struct_ref_seq.db_align_beg 137
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 142
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 6
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details decameric
_pdbx_struct_assembly.oligomeric_count 10
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 9.5420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 4.7710000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
4 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -4.7710000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
5 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 -9.5420000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
6 'crystal symmetry operation' 3_475 -x-1,y+5/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000
1.0000000000 0.0000000000 11.9275000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000
7 'crystal symmetry operation' 3_465 -x-1,y+3/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000
1.0000000000 0.0000000000 7.1565000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000
8 'crystal symmetry operation' 3_455 -x-1,y+1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000
1.0000000000 0.0000000000 2.3855000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000
9 'crystal symmetry operation' 3_445 -x-1,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000
1.0000000000 0.0000000000 -2.3855000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000
10 'crystal symmetry operation' 3_435 -x-1,y-3/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 -27.2800000000 0.0000000000
1.0000000000 0.0000000000 -7.1565000000 0.0000000000 0.0000000000 -1.0000000000 15.7380000000
#
_struct_biol.id 1
_struct_biol.details ?
#
_pdbx_phasing_MR.entry_id 3NVG
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO'
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 2.500
_pdbx_phasing_MR.d_res_low_rotation 15.740
_pdbx_phasing_MR.d_res_high_translation 2.500
_pdbx_phasing_MR.d_res_low_translation 15.740
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ASN N N N N 1
ASN CA C N S 2
ASN C C N N 3
ASN O O N N 4
ASN CB C N N 5
ASN CG C N N 6
ASN OD1 O N N 7
ASN ND2 N N N 8
ASN OXT O N N 9
ASN H H N N 10
ASN H2 H N N 11
ASN HA H N N 12
ASN HB2 H N N 13
ASN HB3 H N N 14
ASN HD21 H N N 15
ASN HD22 H N N 16
ASN HXT H N N 17
GLY N N N N 18
GLY CA C N N 19
GLY C C N N 20
GLY O O N N 21
GLY OXT O N N 22
GLY H H N N 23
GLY H2 H N N 24
GLY HA2 H N N 25
GLY HA3 H N N 26
GLY HXT H N N 27
HIS N N N N 28
HIS CA C N S 29
HIS C C N N 30
HIS O O N N 31
HIS CB C N N 32
HIS CG C Y N 33
HIS ND1 N Y N 34
HIS CD2 C Y N 35
HIS CE1 C Y N 36
HIS NE2 N Y N 37
HIS OXT O N N 38
HIS H H N N 39
HIS H2 H N N 40
HIS HA H N N 41
HIS HB2 H N N 42
HIS HB3 H N N 43
HIS HD1 H N N 44
HIS HD2 H N N 45
HIS HE1 H N N 46
HIS HE2 H N N 47
HIS HXT H N N 48
HOH O O N N 49
HOH H1 H N N 50
HOH H2 H N N 51
ILE N N N N 52
ILE CA C N S 53
ILE C C N N 54
ILE O O N N 55
ILE CB C N S 56
ILE CG1 C N N 57
ILE CG2 C N N 58
ILE CD1 C N N 59
ILE OXT O N N 60
ILE H H N N 61
ILE H2 H N N 62
ILE HA H N N 63
ILE HB H N N 64
ILE HG12 H N N 65
ILE HG13 H N N 66
ILE HG21 H N N 67
ILE HG22 H N N 68
ILE HG23 H N N 69
ILE HD11 H N N 70
ILE HD12 H N N 71
ILE HD13 H N N 72
ILE HXT H N N 73
MET N N N N 74
MET CA C N S 75
MET C C N N 76
MET O O N N 77
MET CB C N N 78
MET CG C N N 79
MET SD S N N 80
MET CE C N N 81
MET OXT O N N 82
MET H H N N 83
MET H2 H N N 84
MET HA H N N 85
MET HB2 H N N 86
MET HB3 H N N 87
MET HG2 H N N 88
MET HG3 H N N 89
MET HE1 H N N 90
MET HE2 H N N 91
MET HE3 H N N 92
MET HXT H N N 93
PHE N N N N 94
PHE CA C N S 95
PHE C C N N 96
PHE O O N N 97
PHE CB C N N 98
PHE CG C Y N 99
PHE CD1 C Y N 100
PHE CD2 C Y N 101
PHE CE1 C Y N 102
PHE CE2 C Y N 103
PHE CZ C Y N 104
PHE OXT O N N 105
PHE H H N N 106
PHE H2 H N N 107
PHE HA H N N 108
PHE HB2 H N N 109
PHE HB3 H N N 110
PHE HD1 H N N 111
PHE HD2 H N N 112
PHE HE1 H N N 113
PHE HE2 H N N 114
PHE HZ H N N 115
PHE HXT H N N 116
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ASN N CA sing N N 1
ASN N H sing N N 2
ASN N H2 sing N N 3
ASN CA C sing N N 4
ASN CA CB sing N N 5
ASN CA HA sing N N 6
ASN C O doub N N 7
ASN C OXT sing N N 8
ASN CB CG sing N N 9
ASN CB HB2 sing N N 10
ASN CB HB3 sing N N 11
ASN CG OD1 doub N N 12
ASN CG ND2 sing N N 13
ASN ND2 HD21 sing N N 14
ASN ND2 HD22 sing N N 15
ASN OXT HXT sing N N 16
GLY N CA sing N N 17
GLY N H sing N N 18
GLY N H2 sing N N 19
GLY CA C sing N N 20
GLY CA HA2 sing N N 21
GLY CA HA3 sing N N 22
GLY C O doub N N 23
GLY C OXT sing N N 24
GLY OXT HXT sing N N 25
HIS N CA sing N N 26
HIS N H sing N N 27
HIS N H2 sing N N 28
HIS CA C sing N N 29
HIS CA CB sing N N 30
HIS CA HA sing N N 31
HIS C O doub N N 32
HIS C OXT sing N N 33
HIS CB CG sing N N 34
HIS CB HB2 sing N N 35
HIS CB HB3 sing N N 36
HIS CG ND1 sing Y N 37
HIS CG CD2 doub Y N 38
HIS ND1 CE1 doub Y N 39
HIS ND1 HD1 sing N N 40
HIS CD2 NE2 sing Y N 41
HIS CD2 HD2 sing N N 42
HIS CE1 NE2 sing Y N 43
HIS CE1 HE1 sing N N 44
HIS NE2 HE2 sing N N 45
HIS OXT HXT sing N N 46
HOH O H1 sing N N 47
HOH O H2 sing N N 48
ILE N CA sing N N 49
ILE N H sing N N 50
ILE N H2 sing N N 51
ILE CA C sing N N 52
ILE CA CB sing N N 53
ILE CA HA sing N N 54
ILE C O doub N N 55
ILE C OXT sing N N 56
ILE CB CG1 sing N N 57
ILE CB CG2 sing N N 58
ILE CB HB sing N N 59
ILE CG1 CD1 sing N N 60
ILE CG1 HG12 sing N N 61
ILE CG1 HG13 sing N N 62
ILE CG2 HG21 sing N N 63
ILE CG2 HG22 sing N N 64
ILE CG2 HG23 sing N N 65
ILE CD1 HD11 sing N N 66
ILE CD1 HD12 sing N N 67
ILE CD1 HD13 sing N N 68
ILE OXT HXT sing N N 69
MET N CA sing N N 70
MET N H sing N N 71
MET N H2 sing N N 72
MET CA C sing N N 73
MET CA CB sing N N 74
MET CA HA sing N N 75
MET C O doub N N 76
MET C OXT sing N N 77
MET CB CG sing N N 78
MET CB HB2 sing N N 79
MET CB HB3 sing N N 80
MET CG SD sing N N 81
MET CG HG2 sing N N 82
MET CG HG3 sing N N 83
MET SD CE sing N N 84
MET CE HE1 sing N N 85
MET CE HE2 sing N N 86
MET CE HE3 sing N N 87
MET OXT HXT sing N N 88
PHE N CA sing N N 89
PHE N H sing N N 90
PHE N H2 sing N N 91
PHE CA C sing N N 92
PHE CA CB sing N N 93
PHE CA HA sing N N 94
PHE C O doub N N 95
PHE C OXT sing N N 96
PHE CB CG sing N N 97
PHE CB HB2 sing N N 98
PHE CB HB3 sing N N 99
PHE CG CD1 doub Y N 100
PHE CG CD2 sing Y N 101
PHE CD1 CE1 sing Y N 102
PHE CD1 HD1 sing N N 103
PHE CD2 CE2 doub Y N 104
PHE CD2 HD2 sing N N 105
PHE CE1 CZ doub Y N 106
PHE CE1 HE1 sing N N 107
PHE CE2 CZ sing Y N 108
PHE CE2 HE2 sing N N 109
PHE CZ HZ sing N N 110
PHE OXT HXT sing N N 111
#
_atom_sites.entry_id 3NVG
_atom_sites.fract_transf_matrix[1][1] 0.036657
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.209600
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.031770
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 N N . MET A 1 1 ? -13.617 -1.968 0.011 1.00 5.99 ? 1 MET A N 1
ATOM 2 C CA . MET A 1 1 ? -12.315 -2.459 0.552 1.00 5.37 ? 1 MET A CA 1
ATOM 3 C C . MET A 1 1 ? -12.059 -1.849 1.902 1.00 5.07 ? 1 MET A C 1
ATOM 4 O O . MET A 1 1 ? -12.171 -0.636 2.069 1.00 5.39 ? 1 MET A O 1
ATOM 5 C CB . MET A 1 1 ? -11.146 -2.105 -0.377 1.00 6.02 ? 1 MET A CB 1
ATOM 6 C CG . MET A 1 1 ? -9.830 -2.625 0.151 1.00 7.88 ? 1 MET A CG 1
ATOM 7 S SD . MET A 1 1 ? -8.355 -2.030 -0.725 1.00 15.51 ? 1 MET A SD 1
ATOM 8 C CE . MET A 1 1 ? -8.673 -2.736 -2.319 1.00 14.12 ? 1 MET A CE 1
ATOM 9 N N . ILE A 1 2 ? -11.728 -2.702 2.865 1.00 4.07 ? 2 ILE A N 1
ATOM 10 C CA . ILE A 1 2 ? -11.159 -2.241 4.126 1.00 4.11 ? 2 ILE A CA 1
ATOM 11 C C . ILE A 1 2 ? -9.762 -2.813 4.206 1.00 4.38 ? 2 ILE A C 1
ATOM 12 O O . ILE A 1 2 ? -9.594 -4.018 4.139 1.00 4.77 ? 2 ILE A O 1
ATOM 13 C CB . ILE A 1 2 ? -11.992 -2.696 5.318 1.00 3.83 ? 2 ILE A CB 1
ATOM 14 C CG1 . ILE A 1 2 ? -13.366 -2.028 5.283 1.00 4.39 ? 2 ILE A CG1 1
ATOM 15 C CG2 . ILE A 1 2 ? -11.198 -2.434 6.631 1.00 4.52 ? 2 ILE A CG2 1
ATOM 16 C CD1 . ILE A 1 2 ? -14.404 -2.700 6.223 1.00 6.50 ? 2 ILE A CD1 1
ATOM 17 N N . HIS A 1 3 ? -8.768 -1.929 4.308 1.00 4.50 ? 3 HIS A N 1
ATOM 18 C CA . HIS A 1 3 ? -7.384 -2.326 4.238 1.00 5.48 ? 3 HIS A CA 1
ATOM 19 C C . HIS A 1 3 ? -6.660 -1.746 5.429 1.00 5.24 ? 3 HIS A C 1
ATOM 20 O O . HIS A 1 3 ? -6.635 -0.540 5.590 1.00 5.63 ? 3 HIS A O 1
ATOM 21 C CB . HIS A 1 3 ? -6.737 -1.786 2.965 1.00 6.64 ? 3 HIS A CB 1
ATOM 22 C CG . HIS A 1 3 ? -5.252 -1.929 2.975 1.00 10.18 ? 3 HIS A CG 1
ATOM 23 N ND1 . HIS A 1 3 ? -4.397 -0.861 3.112 1.00 14.30 ? 3 HIS A ND1 1
ATOM 24 C CD2 . HIS A 1 3 ? -4.475 -3.030 2.985 1.00 13.92 ? 3 HIS A CD2 1
ATOM 25 C CE1 . HIS A 1 3 ? -3.148 -1.294 3.130 1.00 14.50 ? 3 HIS A CE1 1
ATOM 26 N NE2 . HIS A 1 3 ? -3.169 -2.611 3.059 1.00 16.15 ? 3 HIS A NE2 1
ATOM 27 N N . PHE A 1 4 ? -6.075 -2.619 6.240 1.00 4.07 ? 4 PHE A N 1
ATOM 28 C CA . PHE A 1 4 ? -5.226 -2.214 7.359 1.00 3.81 ? 4 PHE A CA 1
ATOM 29 C C . PHE A 1 4 ? -3.870 -2.851 7.171 1.00 3.06 ? 4 PHE A C 1
ATOM 30 O O . PHE A 1 4 ? -3.775 -4.060 7.186 1.00 3.81 ? 4 PHE A O 1
ATOM 31 C CB . PHE A 1 4 ? -5.812 -2.697 8.686 1.00 4.00 ? 4 PHE A CB 1
ATOM 32 C CG . PHE A 1 4 ? -6.853 -1.798 9.248 1.00 6.31 ? 4 PHE A CG 1
ATOM 33 C CD1 . PHE A 1 4 ? -6.588 -1.011 10.365 1.00 6.52 ? 4 PHE A CD1 1
ATOM 34 C CD2 . PHE A 1 4 ? -8.094 -1.704 8.644 1.00 10.00 ? 4 PHE A CD2 1
ATOM 35 C CE1 . PHE A 1 4 ? -7.541 -0.174 10.882 1.00 7.62 ? 4 PHE A CE1 1
ATOM 36 C CE2 . PHE A 1 4 ? -9.065 -0.858 9.168 1.00 12.21 ? 4 PHE A CE2 1
ATOM 37 C CZ . PHE A 1 4 ? -8.784 -0.094 10.286 1.00 10.60 ? 4 PHE A CZ 1
ATOM 38 N N . GLY A 1 5 ? -2.823 -2.047 7.017 1.00 3.53 ? 5 GLY A N 1
ATOM 39 C CA . GLY A 1 5 ? -1.473 -2.574 6.924 1.00 4.31 ? 5 GLY A CA 1
ATOM 40 C C . GLY A 1 5 ? -0.761 -1.935 5.765 1.00 5.12 ? 5 GLY A C 1
ATOM 41 O O . GLY A 1 5 ? -0.738 -0.721 5.670 1.00 6.02 ? 5 GLY A O 1
ATOM 42 N N . ASN A 1 6 ? -0.195 -2.765 4.894 1.00 5.74 ? 6 ASN A N 1
ATOM 43 C CA . ASN A 1 6 ? 0.520 -2.292 3.702 1.00 5.84 ? 6 ASN A CA 1
ATOM 44 C C . ASN A 1 6 ? -0.002 -2.991 2.467 1.00 6.96 ? 6 ASN A C 1
ATOM 45 O O . ASN A 1 6 ? 0.322 -2.567 1.363 1.00 8.45 ? 6 ASN A O 1
ATOM 46 C CB . ASN A 1 6 ? 2.009 -2.594 3.809 1.00 5.65 ? 6 ASN A CB 1
ATOM 47 C CG . ASN A 1 6 ? 2.617 -2.053 5.053 1.00 6.40 ? 6 ASN A CG 1
ATOM 48 O OD1 . ASN A 1 6 ? 2.993 -2.813 5.962 1.00 7.19 ? 6 ASN A OD1 1
ATOM 49 N ND2 . ASN A 1 6 ? 2.707 -0.752 5.135 1.00 4.36 ? 6 ASN A ND2 1
ATOM 50 O OXT . ASN A 1 6 ? -0.712 -3.989 2.558 1.00 6.76 ? 6 ASN A OXT 1
HETATM 51 O O . HOH B 2 . ? -15.880 -4.376 2.701 1.00 40.47 ? 7 HOH A O 1
HETATM 52 O O . HOH B 2 . ? -15.798 -1.963 1.638 1.00 53.97 ? 8 HOH A O 1
#