data_3NP6
#
_entry.id 3NP6
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.380
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3NP6 pdb_00003np6 10.2210/pdb3np6/pdb
NDB NA0614 ? ?
RCSB RCSB060105 ? ?
WWPDB D_1000060105 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 3NX5
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.entry_id 3NP6
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.recvd_initial_deposition_date 2010-06-28
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Ferraroni, M.' 1
'Bazzicalupi, C.' 2
'Gratteri, P.' 3
'Bilia, A.R.' 4
#
_citation.id primary
_citation.title
;X-Ray diffraction analyses of the natural isoquinoline alkaloids Berberine and Sanguinarine complexed with double helix DNA d(CGTACG)
;
_citation.journal_abbrev 'Chem.Commun.(Camb.)'
_citation.journal_volume 47
_citation.page_first 4917
_citation.page_last 4919
_citation.year 2011
_citation.journal_id_ASTM ?
_citation.country UK
_citation.journal_id_ISSN 1359-7345
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 21431128
_citation.pdbx_database_id_DOI 10.1039/c1cc10971e
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ferraroni, M.' 1 ?
primary 'Bazzicalupi, C.' 2 ?
primary 'Bilia, A.R.' 3 ?
primary 'Gratteri, P.' 4 ?
#
_cell.length_a 30.370
_cell.length_b 30.370
_cell.length_c 118.260
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 120.000
_cell.entry_id 3NP6
_cell.pdbx_unique_axis ?
_cell.Z_PDB 24
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 32 2 1'
_symmetry.entry_id 3NP6
_symmetry.Int_Tables_number 154
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 4 ? ? ? ?
2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ?
3 non-polymer syn BERBERINE 336.361 1 ? ? ? ?
4 water nat water 18.015 1 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A,B,C,D
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details 'Synthetic DNA'
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3NP6
_struct_ref.pdbx_db_accession 3NP6
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3NP6 A 1 ? 6 ? 3NP6 1 ? 6 ? 1 6
2 1 3NP6 B 1 ? 6 ? 3NP6 7 ? 12 ? 7 12
3 1 3NP6 C 1 ? 6 ? 3NP6 1 ? 6 ? 1 6
4 1 3NP6 D 1 ? 6 ? 3NP6 7 ? 12 ? 7 12
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361
CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
_exptl.crystals_number 1
_exptl.entry_id 3NP6
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
_exptl_crystal.density_Matthews 2.18
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_percent_sol 43.46
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION'
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.temp 296
_exptl_crystal_grow.pdbx_details 'MPD, MgCl2, NaCl, pH 6.5, vapor diffusion, temperature 296K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'OXFORD ONYX CCD'
_diffrn_detector.pdbx_collection_date 2010-01-22
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.542
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'SEALED TUBE'
_diffrn_source.type 'OXFORD DIFFRACTION ENHANCE ULTRA'
_diffrn_source.pdbx_wavelength_list 1.542
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
#
_reflns.entry_id 3NP6
_reflns.d_resolution_high 2.300
_reflns.number_obs 3159
_reflns.pdbx_Rmerge_I_obs 0.076
_reflns.pdbx_netI_over_sigmaI 29.040
_reflns.percent_possible_obs 100.000
_reflns.B_iso_Wilson_estimate 43.450
_reflns.observed_criterion_sigma_I -3.000
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 39.4200
_reflns.number_all ?
_reflns.pdbx_Rsym_value 0.076
_reflns.pdbx_redundancy ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.pdbx_rejects
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.meanI_over_sigI_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
2.300 2.400 7573 ? 653 ? 0.558 4.8 ? ? ? ? ? 654 ? ? 0.325 ? ? 99.800 0.584 ? 1 1
2.400 2.600 17213 ? 1019 ? 0.384 9.1 ? ? ? ? ? 1019 ? ? 0.153 ? ? 100.000 0.396 ? 2 1
2.600 2.800 14237 ? 738 ? 0.220 14.8 ? ? ? ? ? 738 ? ? 0.085 ? ? 100.000 0.226 ? 3 1
2.800 2.900 6047 ? 291 ? 0.177 18.7 ? ? ? ? ? 291 ? ? 0.060 ? ? 100.000 0.181 ? 4 1
2.900 3.000 5761 ? 273 ? 0.139 23.9 ? ? ? ? ? 273 ? ? 0.049 ? ? 100.000 0.142 ? 5 1
3.000 3.120 5891 ? 277 ? 0.104 29.6 ? ? ? ? ? 277 ? ? 0.038 ? ? 100.000 0.106 ? 6 1
3.120 3.270 6092 ? 278 ? 0.065 41.4 ? ? ? ? ? 278 ? ? 0.020 ? ? 100.000 0.067 ? 7 1
3.270 3.440 5881 ? 272 ? 0.059 46.1 ? ? ? ? ? 272 ? ? 0.018 ? ? 100.000 0.061 ? 8 1
3.440 3.650 5846 ? 263 ? 0.054 51.3 ? ? ? ? ? 263 ? ? 0.015 ? ? 100.000 0.056 ? 9 1
3.650 3.940 6152 ? 277 ? 0.060 52.3 ? ? ? ? ? 277 ? ? 0.017 ? ? 100.000 0.061 ? 10 1
3.940 4.330 6018 ? 285 ? 0.056 55.2 ? ? ? ? ? 285 ? ? 0.015 ? ? 100.000 0.057 ? 11 1
4.330 4.960 5571 ? 259 ? 0.056 55.4 ? ? ? ? ? 259 ? ? 0.017 ? ? 100.000 0.058 ? 12 1
4.960 6.250 5776 ? 272 ? 0.057 56.4 ? ? ? ? ? 272 ? ? 0.015 ? ? 100.000 0.058 ? 13 1
6.250 10.000 4592 ? 211 ? 0.049 61.8 ? ? ? ? ? 211 ? ? 0.013 ? ? 100.000 0.050 ? 14 1
10.000 15.000 863 ? 38 ? 0.041 64.6 ? ? ? ? ? 38 ? ? 0.010 ? ? 100.000 0.041 ? 15 1
15.000 39.420 351 ? 19 ? 0.030 61.0 ? ? ? ? ? 19 ? ? 0.010 ? ? 100.000 0.031 ? 16 1
#
_refine.entry_id 3NP6
_refine.ls_d_res_high 2.3000
_refine.ls_d_res_low 39.4200
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 99.9400
_refine.ls_number_reflns_obs 3153
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details RANDOM
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2387
_refine.ls_R_factor_R_work 0.2361
_refine.ls_wR_factor_R_work 0.2204
_refine.ls_R_factor_R_free 0.3014
_refine.ls_wR_factor_R_free 0.2752
_refine.ls_percent_reflns_R_free 4.4000
_refine.ls_number_reflns_R_free 139
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 18.1113
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.correlation_coeff_Fo_to_Fc 0.9380
_refine.correlation_coeff_Fo_to_Fc_free 0.8820
_refine.overall_SU_R_Cruickshank_DPI 0.0769
_refine.overall_SU_R_free 0.0594
_refine.pdbx_overall_ESU_R_Free 0.0590
_refine.overall_SU_ML 0.2120
_refine.overall_SU_B ?
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.pdbx_solvent_vdw_probe_radii 1.4000
_refine.pdbx_solvent_ion_probe_radii 0.8000
_refine.pdbx_solvent_shrinkage_radii 0.8000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model 'PDB ENTRY 1XCS'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set 0.7005
_refine.B_iso_max 36.440
_refine.B_iso_min 2.000
_refine.occupancy_max 1.000
_refine.occupancy_min 1.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 450
_refine_hist.pdbx_number_atoms_ligand 26
_refine_hist.number_atoms_solvent 1
_refine_hist.number_atoms_total 477
_refine_hist.d_res_high 2.3000
_refine_hist.d_res_low 39.4200
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 531 0.007 0.021 ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 813 1.842 3.000 ? 'X-RAY DIFFRACTION' ?
;CHIRAL-CENTER RESTRAINTS (A'*3)
;
87 0.091 0.200 ? 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 258 0.007 0.020 ? 'X-RAY DIFFRACTION' ?
;MAIN-CHAIN BOND REFINED ATOMS (A'*2)
;
3 0.189 1.500 ? 'X-RAY DIFFRACTION' ?
;MAIN-CHAIN ANGLE REFINED ATOMS (A'*2)
;
4 0.358 2.000 ? 'X-RAY DIFFRACTION' ?
;SIDE-CHAIN BOND REFINED ATOMS (A'*2)
;
528 1.454 3.000 ? 'X-RAY DIFFRACTION' ?
;SIDE-CHAIN ANGLE REFINED ATOMS (A'*2)
;
809 2.547 4.500 ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.d_res_high 2.3000
_refine_ls_shell.d_res_low 2.3600
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.percent_reflns_obs 99.5400
_refine_ls_shell.number_reflns_R_work 212
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_R_work 0.4410
_refine_ls_shell.R_factor_R_free 0.3850
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 6
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.number_reflns_all 218
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.redundancy_reflns_obs ?
#
_struct.entry_id 3NP6
_struct.title 'The crystal structure of Berberine bound to DNA d(CGTACG)'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3NP6
_struct_keywords.text 'DRUG-DNA COMPLEX, DOUBLE HELIX, B-DNA, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 1 ?
D N N 1 ?
E N N 2 ?
F N N 3 ?
G N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
metalc1 metalc ? ? E CA . CA ? ? ? 1_555 B DG 6 OP1 ? ? B CA 1 B DG 12 1_555 ? ? ? ? ? ? ? 2.162 ? ?
metalc2 metalc ? ? E CA . CA ? ? ? 1_555 D DG 6 OP1 ? ? B CA 1 D DG 12 1_555 ? ? ? ? ? ? ? 2.464 ? ?
hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 D DG 6 N3 ? ? A DG 2 D DG 12 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog5 hydrog ? ? A DG 2 N3 ? ? ? 1_555 D DG 6 N2 ? ? A DG 2 D DG 12 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DG 2 N3 ? ? B DG 12 C DG 2 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog14 hydrog ? ? B DG 6 N3 ? ? ? 1_555 C DG 2 N2 ? ? B DG 12 C DG 2 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ?
hydrog15 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? C DT 3 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 3 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? C DT 3 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 3 D DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 3 N3 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 3 O4 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
metalc ? ?
hydrog ? ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software C BER 7 ? 8 'BINDING SITE FOR RESIDUE BER C 7'
AC2 Software B CA 1 ? 3 'BINDING SITE FOR RESIDUE CA B 1'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 8 DC A 5 ? DC A 5 . ? 1_665 ?
2 AC1 8 DG A 6 ? DG A 6 . ? 1_665 ?
3 AC1 8 DC B 1 ? DC B 7 . ? 5_665 ?
4 AC1 8 DG B 2 ? DG B 8 . ? 1_665 ?
5 AC1 8 DC C 5 ? DC C 5 . ? 1_555 ?
6 AC1 8 DG C 6 ? DG C 6 . ? 1_555 ?
7 AC1 8 DC D 1 ? DC D 7 . ? 5_675 ?
8 AC1 8 DG D 2 ? DG D 8 . ? 1_555 ?
9 AC2 3 DG B 6 ? DG B 12 . ? 1_555 ?
10 AC2 3 DG D 6 ? DG D 12 . ? 1_555 ?
11 AC2 3 DG D 6 ? DG D 12 . ? 4_555 ?
#
_atom_sites.entry_id 3NP6
_atom_sites.fract_transf_matrix[1][1] 0.032927
_atom_sites.fract_transf_matrix[1][2] 0.019011
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.038021
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.008456
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
CA
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O3'" . DC A 1 1 ? 7.373 16.624 17.454 1.00 33.62 ? 1 DC A "O3'" 1
ATOM 2 P P . DG A 1 2 ? 7.876 18.042 16.921 1.00 33.77 ? 2 DG A P 1
ATOM 3 O OP1 . DG A 1 2 ? 9.317 18.177 17.241 1.00 33.50 ? 2 DG A OP1 1
ATOM 4 O OP2 . DG A 1 2 ? 6.896 19.057 17.372 1.00 33.95 ? 2 DG A OP2 1
ATOM 5 O "O5'" . DG A 1 2 ? 7.731 17.877 15.340 1.00 32.10 ? 2 DG A "O5'" 1
ATOM 6 C "C5'" . DG A 1 2 ? 7.384 18.985 14.524 1.00 28.87 ? 2 DG A "C5'" 1
ATOM 7 C "C4'" . DG A 1 2 ? 6.873 18.501 13.180 1.00 26.17 ? 2 DG A "C4'" 1
ATOM 8 O "O4'" . DG A 1 2 ? 7.875 17.686 12.529 1.00 23.99 ? 2 DG A "O4'" 1
ATOM 9 C "C3'" . DG A 1 2 ? 5.608 17.661 13.228 1.00 25.52 ? 2 DG A "C3'" 1
ATOM 10 O "O3'" . DG A 1 2 ? 4.756 18.144 12.200 1.00 26.41 ? 2 DG A "O3'" 1
ATOM 11 C "C2'" . DG A 1 2 ? 6.109 16.235 12.993 1.00 23.90 ? 2 DG A "C2'" 1
ATOM 12 C "C1'" . DG A 1 2 ? 7.352 16.440 12.134 1.00 21.80 ? 2 DG A "C1'" 1
ATOM 13 N N9 . DG A 1 2 ? 8.456 15.507 12.339 1.00 18.94 ? 2 DG A N9 1
ATOM 14 C C8 . DG A 1 2 ? 9.051 15.226 13.543 1.00 17.76 ? 2 DG A C8 1
ATOM 15 N N7 . DG A 1 2 ? 10.029 14.378 13.463 1.00 16.95 ? 2 DG A N7 1
ATOM 16 C C5 . DG A 1 2 ? 10.108 14.083 12.113 1.00 16.20 ? 2 DG A C5 1
ATOM 17 C C6 . DG A 1 2 ? 10.997 13.218 11.435 1.00 14.96 ? 2 DG A C6 1
ATOM 18 O O6 . DG A 1 2 ? 11.904 12.527 11.923 1.00 14.75 ? 2 DG A O6 1
ATOM 19 N N1 . DG A 1 2 ? 10.752 13.189 10.063 1.00 14.19 ? 2 DG A N1 1
ATOM 20 C C2 . DG A 1 2 ? 9.770 13.908 9.430 1.00 14.43 ? 2 DG A C2 1
ATOM 21 N N2 . DG A 1 2 ? 9.693 13.748 8.104 1.00 13.38 ? 2 DG A N2 1
ATOM 22 N N3 . DG A 1 2 ? 8.928 14.731 10.056 1.00 16.02 ? 2 DG A N3 1
ATOM 23 C C4 . DG A 1 2 ? 9.148 14.771 11.398 1.00 16.96 ? 2 DG A C4 1
ATOM 24 P P . DT A 1 3 ? 3.192 17.830 12.151 1.00 26.95 ? 3 DT A P 1
ATOM 25 O OP1 . DT A 1 3 ? 2.503 19.041 11.663 1.00 27.03 ? 3 DT A OP1 1
ATOM 26 O OP2 . DT A 1 3 ? 2.767 17.188 13.410 1.00 28.04 ? 3 DT A OP2 1
ATOM 27 O "O5'" . DT A 1 3 ? 3.125 16.685 11.043 1.00 26.90 ? 3 DT A "O5'" 1
ATOM 28 C "C5'" . DT A 1 3 ? 3.713 16.855 9.764 1.00 24.70 ? 3 DT A "C5'" 1
ATOM 29 C "C4'" . DT A 1 3 ? 3.941 15.509 9.108 1.00 23.27 ? 3 DT A "C4'" 1
ATOM 30 O "O4'" . DT A 1 3 ? 5.041 14.829 9.744 1.00 22.25 ? 3 DT A "O4'" 1
ATOM 31 C "C3'" . DT A 1 3 ? 2.782 14.522 9.163 1.00 22.83 ? 3 DT A "C3'" 1
ATOM 32 O "O3'" . DT A 1 3 ? 2.362 14.319 7.824 1.00 23.76 ? 3 DT A "O3'" 1
ATOM 33 C "C2'" . DT A 1 3 ? 3.372 13.270 9.817 1.00 21.49 ? 3 DT A "C2'" 1
ATOM 34 C "C1'" . DT A 1 3 ? 4.848 13.458 9.515 1.00 20.49 ? 3 DT A "C1'" 1
ATOM 35 N N1 . DT A 1 3 ? 5.840 12.735 10.359 1.00 18.35 ? 3 DT A N1 1
ATOM 36 C C2 . DT A 1 3 ? 6.777 11.921 9.752 1.00 16.91 ? 3 DT A C2 1
ATOM 37 O O2 . DT A 1 3 ? 6.848 11.713 8.560 1.00 15.96 ? 3 DT A O2 1
ATOM 38 N N3 . DT A 1 3 ? 7.647 11.321 10.612 1.00 16.77 ? 3 DT A N3 1
ATOM 39 C C4 . DT A 1 3 ? 7.690 11.445 11.984 1.00 16.72 ? 3 DT A C4 1
ATOM 40 O O4 . DT A 1 3 ? 8.534 10.850 12.642 1.00 17.08 ? 3 DT A O4 1
ATOM 41 C C5 . DT A 1 3 ? 6.692 12.313 12.561 1.00 17.14 ? 3 DT A C5 1
ATOM 42 C C7 . DT A 1 3 ? 6.621 12.540 14.043 1.00 17.65 ? 3 DT A C7 1
ATOM 43 C C6 . DT A 1 3 ? 5.828 12.909 11.729 1.00 17.74 ? 3 DT A C6 1
ATOM 44 P P . DA A 1 4 ? 1.181 13.331 7.411 1.00 23.52 ? 4 DA A P 1
ATOM 45 O OP1 . DA A 1 4 ? 0.450 13.937 6.285 1.00 24.57 ? 4 DA A OP1 1
ATOM 46 O OP2 . DA A 1 4 ? 0.432 12.884 8.604 1.00 24.00 ? 4 DA A OP2 1
ATOM 47 O "O5'" . DA A 1 4 ? 2.044 12.115 6.867 1.00 22.14 ? 4 DA A "O5'" 1
ATOM 48 C "C5'" . DA A 1 4 ? 2.591 12.149 5.568 1.00 19.65 ? 4 DA A "C5'" 1
ATOM 49 C "C4'" . DA A 1 4 ? 3.265 10.821 5.346 1.00 18.23 ? 4 DA A "C4'" 1
ATOM 50 O "O4'" . DA A 1 4 ? 4.072 10.595 6.514 1.00 16.45 ? 4 DA A "O4'" 1
ATOM 51 C "C3'" . DA A 1 4 ? 2.330 9.619 5.268 1.00 18.47 ? 4 DA A "C3'" 1
ATOM 52 O "O3'" . DA A 1 4 ? 2.606 8.882 4.084 1.00 21.05 ? 4 DA A "O3'" 1
ATOM 53 C "C2'" . DA A 1 4 ? 2.630 8.804 6.526 1.00 16.05 ? 4 DA A "C2'" 1
ATOM 54 C "C1'" . DA A 1 4 ? 4.053 9.231 6.830 1.00 12.98 ? 4 DA A "C1'" 1
ATOM 55 N N9 . DA A 1 4 ? 4.452 9.147 8.222 1.00 7.89 ? 4 DA A N9 1
ATOM 56 C C8 . DA A 1 4 ? 3.846 9.733 9.297 1.00 5.77 ? 4 DA A C8 1
ATOM 57 N N7 . DA A 1 4 ? 4.441 9.489 10.435 1.00 4.42 ? 4 DA A N7 1
ATOM 58 C C5 . DA A 1 4 ? 5.522 8.702 10.071 1.00 2.00 ? 4 DA A C5 1
ATOM 59 C C6 . DA A 1 4 ? 6.549 8.102 10.802 1.00 2.00 ? 4 DA A C6 1
ATOM 60 N N6 . DA A 1 4 ? 6.637 8.224 12.116 1.00 2.00 ? 4 DA A N6 1
ATOM 61 N N1 . DA A 1 4 ? 7.481 7.359 10.162 1.00 2.00 ? 4 DA A N1 1
ATOM 62 C C2 . DA A 1 4 ? 7.368 7.232 8.834 1.00 2.11 ? 4 DA A C2 1
ATOM 63 N N3 . DA A 1 4 ? 6.445 7.753 8.017 1.00 3.99 ? 4 DA A N3 1
ATOM 64 C C4 . DA A 1 4 ? 5.544 8.478 8.708 1.00 4.59 ? 4 DA A C4 1
ATOM 65 P P . DC A 1 5 ? 1.599 7.758 3.563 1.00 21.91 ? 5 DC A P 1
ATOM 66 O OP1 . DC A 1 5 ? 1.717 7.695 2.093 1.00 22.89 ? 5 DC A OP1 1
ATOM 67 O OP2 . DC A 1 5 ? 0.286 7.940 4.211 1.00 22.16 ? 5 DC A OP2 1
ATOM 68 O "O5'" . DC A 1 5 ? 2.240 6.442 4.165 1.00 22.35 ? 5 DC A "O5'" 1
ATOM 69 C "C5'" . DC A 1 5 ? 3.564 6.076 3.832 1.00 22.86 ? 5 DC A "C5'" 1
ATOM 70 C "C4'" . DC A 1 5 ? 3.988 5.014 4.812 1.00 23.27 ? 5 DC A "C4'" 1
ATOM 71 O "O4'" . DC A 1 5 ? 4.197 5.609 6.105 1.00 22.63 ? 5 DC A "O4'" 1
ATOM 72 C "C3'" . DC A 1 5 ? 2.877 4.013 5.064 1.00 24.31 ? 5 DC A "C3'" 1
ATOM 73 O "O3'" . DC A 1 5 ? 3.091 2.912 4.214 1.00 25.03 ? 5 DC A "O3'" 1
ATOM 74 C "C2'" . DC A 1 5 ? 2.989 3.663 6.549 1.00 23.53 ? 5 DC A "C2'" 1
ATOM 75 C "C1'" . DC A 1 5 ? 4.125 4.557 7.033 1.00 21.81 ? 5 DC A "C1'" 1
ATOM 76 N N1 . DC A 1 5 ? 3.953 5.081 8.420 1.00 20.17 ? 5 DC A N1 1
ATOM 77 C C2 . DC A 1 5 ? 4.918 4.754 9.376 1.00 19.74 ? 5 DC A C2 1
ATOM 78 O O2 . DC A 1 5 ? 5.883 4.055 9.049 1.00 19.94 ? 5 DC A O2 1
ATOM 79 N N3 . DC A 1 5 ? 4.771 5.215 10.643 1.00 19.41 ? 5 DC A N3 1
ATOM 80 C C4 . DC A 1 5 ? 3.725 5.972 10.971 1.00 18.81 ? 5 DC A C4 1
ATOM 81 N N4 . DC A 1 5 ? 3.647 6.396 12.235 1.00 18.38 ? 5 DC A N4 1
ATOM 82 C C5 . DC A 1 5 ? 2.728 6.321 10.012 1.00 19.31 ? 5 DC A C5 1
ATOM 83 C C6 . DC A 1 5 ? 2.879 5.857 8.762 1.00 19.78 ? 5 DC A C6 1
ATOM 84 P P . DG A 1 6 ? 1.927 1.876 3.943 1.00 25.59 ? 6 DG A P 1
ATOM 85 O OP1 . DG A 1 6 ? 2.259 1.234 2.658 1.00 27.15 ? 6 DG A OP1 1
ATOM 86 O OP2 . DG A 1 6 ? 0.611 2.519 4.163 1.00 24.51 ? 6 DG A OP2 1
ATOM 87 O "O5'" . DG A 1 6 ? 2.184 0.805 5.096 1.00 27.17 ? 6 DG A "O5'" 1
ATOM 88 C "C5'" . DG A 1 6 ? 3.120 -0.249 4.888 1.00 28.16 ? 6 DG A "C5'" 1
ATOM 89 C "C4'" . DG A 1 6 ? 2.548 -1.572 5.356 1.00 29.11 ? 6 DG A "C4'" 1
ATOM 90 O "O4'" . DG A 1 6 ? 2.248 -1.436 6.762 1.00 29.93 ? 6 DG A "O4'" 1
ATOM 91 C "C3'" . DG A 1 6 ? 1.240 -1.992 4.700 1.00 29.28 ? 6 DG A "C3'" 1
ATOM 92 O "O3'" . DG A 1 6 ? 1.483 -2.790 3.560 1.00 29.89 ? 6 DG A "O3'" 1
ATOM 93 C "C2'" . DG A 1 6 ? 0.587 -2.802 5.806 1.00 29.78 ? 6 DG A "C2'" 1
ATOM 94 C "C1'" . DG A 1 6 ? 0.999 -2.018 7.049 1.00 30.23 ? 6 DG A "C1'" 1
ATOM 95 N N9 . DG A 1 6 ? 0.072 -0.970 7.479 1.00 30.98 ? 6 DG A N9 1
ATOM 96 C C8 . DG A 1 6 ? -0.983 -0.443 6.774 1.00 31.60 ? 6 DG A C8 1
ATOM 97 N N7 . DG A 1 6 ? -1.642 0.478 7.413 1.00 32.21 ? 6 DG A N7 1
ATOM 98 C C5 . DG A 1 6 ? -0.980 0.574 8.627 1.00 32.53 ? 6 DG A C5 1
ATOM 99 C C6 . DG A 1 6 ? -1.242 1.413 9.740 1.00 32.85 ? 6 DG A C6 1
ATOM 100 O O6 . DG A 1 6 ? -2.141 2.257 9.860 1.00 33.22 ? 6 DG A O6 1
ATOM 101 N N1 . DG A 1 6 ? -0.339 1.200 10.782 1.00 32.46 ? 6 DG A N1 1
ATOM 102 C C2 . DG A 1 6 ? 0.694 0.293 10.745 1.00 31.95 ? 6 DG A C2 1
ATOM 103 N N2 . DG A 1 6 ? 1.458 0.227 11.840 1.00 32.27 ? 6 DG A N2 1
ATOM 104 N N3 . DG A 1 6 ? 0.951 -0.499 9.709 1.00 32.18 ? 6 DG A N3 1
ATOM 105 C C4 . DG A 1 6 ? 0.078 -0.309 8.686 1.00 31.79 ? 6 DG A C4 1
ATOM 106 O "O5'" . DC B 1 1 ? 15.161 4.258 21.543 1.00 28.71 ? 7 DC B "O5'" 1
ATOM 107 C "C5'" . DC B 1 1 ? 14.834 2.988 20.981 1.00 27.44 ? 7 DC B "C5'" 1
ATOM 108 C "C4'" . DC B 1 1 ? 13.551 2.410 21.562 1.00 26.23 ? 7 DC B "C4'" 1
ATOM 109 O "O4'" . DC B 1 1 ? 13.775 1.981 22.927 1.00 26.06 ? 7 DC B "O4'" 1
ATOM 110 C "C3'" . DC B 1 1 ? 12.340 3.339 21.607 1.00 26.04 ? 7 DC B "C3'" 1
ATOM 111 O "O3'" . DC B 1 1 ? 11.181 2.617 21.201 1.00 25.84 ? 7 DC B "O3'" 1
ATOM 112 C "C2'" . DC B 1 1 ? 12.251 3.730 23.079 1.00 25.67 ? 7 DC B "C2'" 1
ATOM 113 C "C1'" . DC B 1 1 ? 12.705 2.430 23.730 1.00 25.36 ? 7 DC B "C1'" 1
ATOM 114 N N1 . DC B 1 1 ? 13.195 2.525 25.133 1.00 24.70 ? 7 DC B N1 1
ATOM 115 C C2 . DC B 1 1 ? 12.500 1.888 26.173 1.00 23.93 ? 7 DC B C2 1
ATOM 116 O O2 . DC B 1 1 ? 11.465 1.251 25.940 1.00 22.76 ? 7 DC B O2 1
ATOM 117 N N3 . DC B 1 1 ? 12.996 1.995 27.433 1.00 24.55 ? 7 DC B N3 1
ATOM 118 C C4 . DC B 1 1 ? 14.117 2.692 27.670 1.00 24.89 ? 7 DC B C4 1
ATOM 119 N N4 . DC B 1 1 ? 14.562 2.768 28.926 1.00 25.00 ? 7 DC B N4 1
ATOM 120 C C5 . DC B 1 1 ? 14.837 3.344 26.628 1.00 25.21 ? 7 DC B C5 1
ATOM 121 C C6 . DC B 1 1 ? 14.343 3.228 25.391 1.00 25.25 ? 7 DC B C6 1
ATOM 122 P P . DG B 1 2 ? 10.425 2.912 19.826 1.00 25.10 ? 8 DG B P 1
ATOM 123 O OP1 . DG B 1 2 ? 10.115 4.351 19.752 1.00 25.91 ? 8 DG B OP1 1
ATOM 124 O OP2 . DG B 1 2 ? 9.331 1.927 19.720 1.00 26.33 ? 8 DG B OP2 1
ATOM 125 O "O5'" . DG B 1 2 ? 11.510 2.582 18.712 1.00 23.94 ? 8 DG B "O5'" 1
ATOM 126 C "C5'" . DG B 1 2 ? 11.796 1.253 18.322 1.00 22.22 ? 8 DG B "C5'" 1
ATOM 127 C "C4'" . DG B 1 2 ? 11.655 1.069 16.824 1.00 20.73 ? 8 DG B "C4'" 1
ATOM 128 O "O4'" . DG B 1 2 ? 10.259 1.149 16.495 1.00 19.85 ? 8 DG B "O4'" 1
ATOM 129 C "C3'" . DG B 1 2 ? 12.321 2.127 15.961 1.00 20.32 ? 8 DG B "C3'" 1
ATOM 130 O "O3'" . DG B 1 2 ? 13.636 1.707 15.655 1.00 21.31 ? 8 DG B "O3'" 1
ATOM 131 C "C2'" . DG B 1 2 ? 11.449 2.172 14.712 1.00 19.50 ? 8 DG B "C2'" 1
ATOM 132 C "C1'" . DG B 1 2 ? 10.102 1.662 15.188 1.00 18.40 ? 8 DG B "C1'" 1
ATOM 133 N N9 . DG B 1 2 ? 9.042 2.662 15.219 1.00 16.33 ? 8 DG B N9 1
ATOM 134 C C8 . DG B 1 2 ? 8.521 3.281 16.325 1.00 15.46 ? 8 DG B C8 1
ATOM 135 N N7 . DG B 1 2 ? 7.568 4.114 16.053 1.00 15.19 ? 8 DG B N7 1
ATOM 136 C C5 . DG B 1 2 ? 7.441 4.039 14.679 1.00 14.54 ? 8 DG B C5 1
ATOM 137 C C6 . DG B 1 2 ? 6.563 4.719 13.814 1.00 14.02 ? 8 DG B C6 1
ATOM 138 O O6 . DG B 1 2 ? 5.701 5.547 14.121 1.00 15.05 ? 8 DG B O6 1
ATOM 139 N N1 . DG B 1 2 ? 6.757 4.356 12.484 1.00 13.72 ? 8 DG B N1 1
ATOM 140 C C2 . DG B 1 2 ? 7.693 3.450 12.045 1.00 13.61 ? 8 DG B C2 1
ATOM 141 N N2 . DG B 1 2 ? 7.752 3.212 10.729 1.00 13.66 ? 8 DG B N2 1
ATOM 142 N N3 . DG B 1 2 ? 8.522 2.805 12.849 1.00 14.66 ? 8 DG B N3 1
ATOM 143 C C4 . DG B 1 2 ? 8.339 3.148 14.149 1.00 15.09 ? 8 DG B C4 1
ATOM 144 P P . DT B 1 3 ? 14.720 2.716 15.065 1.00 21.34 ? 9 DT B P 1
ATOM 145 O OP1 . DT B 1 3 ? 16.039 2.070 15.171 1.00 22.36 ? 9 DT B OP1 1
ATOM 146 O OP2 . DT B 1 3 ? 14.479 4.057 15.633 1.00 21.53 ? 9 DT B OP2 1
ATOM 147 O "O5'" . DT B 1 3 ? 14.351 2.754 13.520 1.00 20.90 ? 9 DT B "O5'" 1
ATOM 148 C "C5'" . DT B 1 3 ? 14.720 1.684 12.667 1.00 18.67 ? 9 DT B "C5'" 1
ATOM 149 C "C4'" . DT B 1 3 ? 14.230 1.992 11.268 1.00 16.97 ? 9 DT B "C4'" 1
ATOM 150 O "O4'" . DT B 1 3 ? 12.882 2.521 11.319 1.00 15.79 ? 9 DT B "O4'" 1
ATOM 151 C "C3'" . DT B 1 3 ? 15.063 3.023 10.536 1.00 16.67 ? 9 DT B "C3'" 1
ATOM 152 O "O3'" . DT B 1 3 ? 15.306 2.534 9.232 1.00 17.48 ? 9 DT B "O3'" 1
ATOM 153 C "C2'" . DT B 1 3 ? 14.198 4.283 10.572 1.00 16.24 ? 9 DT B "C2'" 1
ATOM 154 C "C1'" . DT B 1 3 ? 12.781 3.738 10.619 1.00 14.51 ? 9 DT B "C1'" 1
ATOM 155 N N1 . DT B 1 3 ? 11.792 4.618 11.331 1.00 12.73 ? 9 DT B N1 1
ATOM 156 C C2 . DT B 1 3 ? 10.712 5.147 10.652 1.00 11.24 ? 9 DT B C2 1
ATOM 157 O O2 . DT B 1 3 ? 10.477 4.968 9.475 1.00 10.31 ? 9 DT B O2 1
ATOM 158 N N3 . DT B 1 3 ? 9.887 5.922 11.421 1.00 11.34 ? 9 DT B N3 1
ATOM 159 C C4 . DT B 1 3 ? 10.012 6.226 12.762 1.00 10.97 ? 9 DT B C4 1
ATOM 160 O O4 . DT B 1 3 ? 9.201 6.940 13.347 1.00 11.64 ? 9 DT B O4 1
ATOM 161 C C5 . DT B 1 3 ? 11.154 5.644 13.411 1.00 11.08 ? 9 DT B C5 1
ATOM 162 C C7 . DT B 1 3 ? 11.408 5.892 14.870 1.00 11.66 ? 9 DT B C7 1
ATOM 163 C C6 . DT B 1 3 ? 11.973 4.886 12.676 1.00 11.69 ? 9 DT B C6 1
ATOM 164 P P . DA B 1 4 ? 15.991 3.409 8.092 1.00 16.63 ? 10 DA B P 1
ATOM 165 O OP1 . DA B 1 4 ? 16.551 2.467 7.111 1.00 17.48 ? 10 DA B OP1 1
ATOM 166 O OP2 . DA B 1 4 ? 16.858 4.436 8.699 1.00 17.93 ? 10 DA B OP2 1
ATOM 167 O "O5'" . DA B 1 4 ? 14.728 4.148 7.483 1.00 15.03 ? 10 DA B "O5'" 1
ATOM 168 C "C5'" . DA B 1 4 ? 14.015 3.601 6.397 1.00 11.40 ? 10 DA B "C5'" 1
ATOM 169 C "C4'" . DA B 1 4 ? 13.393 4.726 5.596 1.00 7.95 ? 10 DA B "C4'" 1
ATOM 170 O "O4'" . DA B 1 4 ? 12.498 5.484 6.441 1.00 4.92 ? 10 DA B "O4'" 1
ATOM 171 C "C3'" . DA B 1 4 ? 14.388 5.725 5.028 1.00 8.06 ? 10 DA B "C3'" 1
ATOM 172 O "O3'" . DA B 1 4 ? 13.992 5.983 3.698 1.00 12.84 ? 10 DA B "O3'" 1
ATOM 173 C "C2'" . DA B 1 4 ? 14.263 6.947 5.946 1.00 2.87 ? 10 DA B "C2'" 1
ATOM 174 C "C1'" . DA B 1 4 ? 12.829 6.868 6.451 1.00 2.00 ? 10 DA B "C1'" 1
ATOM 175 N N9 . DA B 1 4 ? 12.568 7.372 7.807 1.00 2.00 ? 10 DA B N9 1
ATOM 176 C C8 . DA B 1 4 ? 13.277 7.147 8.948 1.00 2.00 ? 10 DA B C8 1
ATOM 177 N N7 . DA B 1 4 ? 12.794 7.706 10.028 1.00 2.00 ? 10 DA B N7 1
ATOM 178 C C5 . DA B 1 4 ? 11.661 8.354 9.583 1.00 2.00 ? 10 DA B C5 1
ATOM 179 C C6 . DA B 1 4 ? 10.724 9.169 10.241 1.00 2.00 ? 10 DA B C6 1
ATOM 180 N N6 . DA B 1 4 ? 10.820 9.388 11.549 1.00 2.00 ? 10 DA B N6 1
ATOM 181 N N1 . DA B 1 4 ? 9.691 9.699 9.553 1.00 2.00 ? 10 DA B N1 1
ATOM 182 C C2 . DA B 1 4 ? 9.696 9.410 8.255 1.00 2.00 ? 10 DA B C2 1
ATOM 183 N N3 . DA B 1 4 ? 10.526 8.689 7.509 1.00 2.00 ? 10 DA B N3 1
ATOM 184 C C4 . DA B 1 4 ? 11.519 8.175 8.235 1.00 2.00 ? 10 DA B C4 1
ATOM 185 P P . DC B 1 5 ? 14.884 6.796 2.657 1.00 15.35 ? 11 DC B P 1
ATOM 186 O OP1 . DC B 1 5 ? 14.501 6.314 1.312 1.00 16.88 ? 11 DC B OP1 1
ATOM 187 O OP2 . DC B 1 5 ? 16.299 6.818 3.066 1.00 15.46 ? 11 DC B OP2 1
ATOM 188 O "O5'" . DC B 1 5 ? 14.325 8.266 2.866 1.00 14.87 ? 11 DC B "O5'" 1
ATOM 189 C "C5'" . DC B 1 5 ? 13.023 8.600 2.452 1.00 13.22 ? 11 DC B "C5'" 1
ATOM 190 C "C4'" . DC B 1 5 ? 12.697 9.986 2.956 1.00 12.23 ? 11 DC B "C4'" 1
ATOM 191 O "O4'" . DC B 1 5 ? 12.613 9.947 4.399 1.00 10.52 ? 11 DC B "O4'" 1
ATOM 192 C "C3'" . DC B 1 5 ? 13.729 11.065 2.633 1.00 12.49 ? 11 DC B "C3'" 1
ATOM 193 O "O3'" . DC B 1 5 ? 13.066 12.199 2.077 1.00 14.45 ? 11 DC B "O3'" 1
ATOM 194 C "C2'" . DC B 1 5 ? 14.329 11.384 3.995 1.00 10.23 ? 11 DC B "C2'" 1
ATOM 195 C "C1'" . DC B 1 5 ? 13.085 11.188 4.843 1.00 6.65 ? 11 DC B "C1'" 1
ATOM 196 N N1 . DC B 1 5 ? 13.327 11.118 6.286 1.00 3.24 ? 11 DC B N1 1
ATOM 197 C C2 . DC B 1 5 ? 12.477 11.783 7.177 1.00 2.00 ? 11 DC B C2 1
ATOM 198 O O2 . DC B 1 5 ? 11.523 12.476 6.804 1.00 3.57 ? 11 DC B O2 1
ATOM 199 N N3 . DC B 1 5 ? 12.782 11.697 8.480 1.00 2.00 ? 11 DC B N3 1
ATOM 200 C C4 . DC B 1 5 ? 13.803 10.985 8.928 1.00 2.00 ? 11 DC B C4 1
ATOM 201 N N4 . DC B 1 5 ? 13.987 10.932 10.244 1.00 2.00 ? 11 DC B N4 1
ATOM 202 C C5 . DC B 1 5 ? 14.672 10.279 8.041 1.00 2.00 ? 11 DC B C5 1
ATOM 203 C C6 . DC B 1 5 ? 14.393 10.377 6.732 1.00 2.04 ? 11 DC B C6 1
ATOM 204 P P . DG B 1 6 ? 13.859 13.304 1.259 1.00 14.94 ? 12 DG B P 1
ATOM 205 O OP1 . DG B 1 6 ? 12.843 14.118 0.588 1.00 16.16 ? 12 DG B OP1 1
ATOM 206 O OP2 . DG B 1 6 ? 14.929 12.660 0.478 1.00 15.11 ? 12 DG B OP2 1
ATOM 207 O "O5'" . DG B 1 6 ? 14.549 14.171 2.399 1.00 16.98 ? 12 DG B "O5'" 1
ATOM 208 C "C5'" . DG B 1 6 ? 13.819 15.077 3.204 1.00 18.17 ? 12 DG B "C5'" 1
ATOM 209 C "C4'" . DG B 1 6 ? 14.736 16.147 3.767 1.00 19.82 ? 12 DG B "C4'" 1
ATOM 210 O "O4'" . DG B 1 6 ? 15.872 15.540 4.431 1.00 20.59 ? 12 DG B "O4'" 1
ATOM 211 C "C3'" . DG B 1 6 ? 15.288 17.125 2.740 1.00 20.30 ? 12 DG B "C3'" 1
ATOM 212 O "O3'" . DG B 1 6 ? 14.675 18.376 2.942 1.00 21.65 ? 12 DG B "O3'" 1
ATOM 213 C "C2'" . DG B 1 6 ? 16.777 17.218 3.050 1.00 20.79 ? 12 DG B "C2'" 1
ATOM 214 C "C1'" . DG B 1 6 ? 17.083 15.936 3.815 1.00 21.02 ? 12 DG B "C1'" 1
ATOM 215 N N9 . DG B 1 6 ? 17.545 14.817 2.998 1.00 21.66 ? 12 DG B N9 1
ATOM 216 C C8 . DG B 1 6 ? 17.872 14.831 1.665 1.00 22.21 ? 12 DG B C8 1
ATOM 217 N N7 . DG B 1 6 ? 18.238 13.669 1.204 1.00 22.96 ? 12 DG B N7 1
ATOM 218 C C5 . DG B 1 6 ? 18.150 12.827 2.301 1.00 23.07 ? 12 DG B C5 1
ATOM 219 C C6 . DG B 1 6 ? 18.422 11.444 2.418 1.00 23.75 ? 12 DG B C6 1
ATOM 220 O O6 . DG B 1 6 ? 18.812 10.670 1.537 1.00 25.08 ? 12 DG B O6 1
ATOM 221 N N1 . DG B 1 6 ? 18.202 10.968 3.712 1.00 23.85 ? 12 DG B N1 1
ATOM 222 C C2 . DG B 1 6 ? 17.769 11.741 4.763 1.00 23.17 ? 12 DG B C2 1
ATOM 223 N N2 . DG B 1 6 ? 17.607 11.129 5.941 1.00 23.68 ? 12 DG B N2 1
ATOM 224 N N3 . DG B 1 6 ? 17.515 13.036 4.663 1.00 23.21 ? 12 DG B N3 1
ATOM 225 C C4 . DG B 1 6 ? 17.724 13.517 3.413 1.00 22.49 ? 12 DG B C4 1
ATOM 226 O "O3'" . DC C 1 1 ? 20.861 10.293 13.990 1.00 30.28 ? 1 DC C "O3'" 1
ATOM 227 P P . DG C 1 2 ? 19.829 9.095 14.230 1.00 30.38 ? 2 DG C P 1
ATOM 228 O OP1 . DG C 1 2 ? 18.741 9.609 15.094 1.00 30.43 ? 2 DG C OP1 1
ATOM 229 O OP2 . DG C 1 2 ? 20.607 7.912 14.652 1.00 30.53 ? 2 DG C OP2 1
ATOM 230 O "O5'" . DG C 1 2 ? 19.228 8.817 12.769 1.00 28.42 ? 2 DG C "O5'" 1
ATOM 231 C "C5'" . DG C 1 2 ? 19.968 8.116 11.767 1.00 24.24 ? 2 DG C "C5'" 1
ATOM 232 C "C4'" . DG C 1 2 ? 19.906 8.781 10.394 1.00 20.71 ? 2 DG C "C4'" 1
ATOM 233 O "O4'" . DG C 1 2 ? 18.721 9.600 10.226 1.00 17.89 ? 2 DG C "O4'" 1
ATOM 234 C "C3'" . DG C 1 2 ? 21.078 9.684 10.058 1.00 20.22 ? 2 DG C "C3'" 1
ATOM 235 O "O3'" . DG C 1 2 ? 21.516 9.321 8.760 1.00 22.65 ? 2 DG C "O3'" 1
ATOM 236 C "C2'" . DG C 1 2 ? 20.498 11.099 10.124 1.00 16.80 ? 2 DG C "C2'" 1
ATOM 237 C "C1'" . DG C 1 2 ? 19.036 10.893 9.745 1.00 12.88 ? 2 DG C "C1'" 1
ATOM 238 N N9 . DG C 1 2 ? 18.055 11.757 10.399 1.00 5.95 ? 2 DG C N9 1
ATOM 239 C C8 . DG C 1 2 ? 17.894 11.859 11.758 1.00 4.07 ? 2 DG C C8 1
ATOM 240 N N7 . DG C 1 2 ? 16.947 12.676 12.109 1.00 2.00 ? 2 DG C N7 1
ATOM 241 C C5 . DG C 1 2 ? 16.431 13.141 10.914 1.00 2.00 ? 2 DG C C5 1
ATOM 242 C C6 . DG C 1 2 ? 15.370 14.055 10.699 1.00 2.00 ? 2 DG C C6 1
ATOM 243 O O6 . DG C 1 2 ? 14.639 14.644 11.494 1.00 2.00 ? 2 DG C O6 1
ATOM 244 N N1 . DG C 1 2 ? 15.115 14.265 9.362 1.00 2.00 ? 2 DG C N1 1
ATOM 245 C C2 . DG C 1 2 ? 15.820 13.680 8.349 1.00 2.00 ? 2 DG C C2 1
ATOM 246 N N2 . DG C 1 2 ? 15.456 14.040 7.118 1.00 2.00 ? 2 DG C N2 1
ATOM 247 N N3 . DG C 1 2 ? 16.828 12.830 8.529 1.00 2.00 ? 2 DG C N3 1
ATOM 248 C C4 . DG C 1 2 ? 17.086 12.584 9.845 1.00 2.00 ? 2 DG C C4 1
ATOM 249 P P . DT C 1 3 ? 22.930 9.778 8.178 1.00 24.51 ? 3 DT C P 1
ATOM 250 O OP1 . DT C 1 3 ? 23.390 8.679 7.312 1.00 25.20 ? 3 DT C OP1 1
ATOM 251 O OP2 . DT C 1 3 ? 23.775 10.273 9.284 1.00 25.21 ? 3 DT C OP2 1
ATOM 252 O "O5'" . DT C 1 3 ? 22.578 11.035 7.261 1.00 24.22 ? 3 DT C "O5'" 1
ATOM 253 C "C5'" . DT C 1 3 ? 21.659 10.888 6.187 1.00 23.52 ? 3 DT C "C5'" 1
ATOM 254 C "C4'" . DT C 1 3 ? 21.133 12.233 5.731 1.00 22.56 ? 3 DT C "C4'" 1
ATOM 255 O "O4'" . DT C 1 3 ? 20.248 12.803 6.728 1.00 22.33 ? 3 DT C "O4'" 1
ATOM 256 C "C3'" . DT C 1 3 ? 22.203 13.285 5.475 1.00 22.61 ? 3 DT C "C3'" 1
ATOM 257 O "O3'" . DT C 1 3 ? 22.118 13.660 4.110 1.00 23.46 ? 3 DT C "O3'" 1
ATOM 258 C "C2'" . DT C 1 3 ? 21.857 14.429 6.433 1.00 21.78 ? 3 DT C "C2'" 1
ATOM 259 C "C1'" . DT C 1 3 ? 20.366 14.205 6.647 1.00 20.25 ? 3 DT C "C1'" 1
ATOM 260 N N1 . DT C 1 3 ? 19.750 14.807 7.862 1.00 18.05 ? 3 DT C N1 1
ATOM 261 C C2 . DT C 1 3 ? 18.707 15.680 7.683 1.00 17.65 ? 3 DT C C2 1
ATOM 262 O O2 . DT C 1 3 ? 18.281 15.988 6.595 1.00 19.03 ? 3 DT C O2 1
ATOM 263 N N3 . DT C 1 3 ? 18.166 16.200 8.825 1.00 16.81 ? 3 DT C N3 1
ATOM 264 C C4 . DT C 1 3 ? 18.559 15.939 10.118 1.00 16.40 ? 3 DT C C4 1
ATOM 265 O O4 . DT C 1 3 ? 17.992 16.467 11.067 1.00 16.21 ? 3 DT C O4 1
ATOM 266 C C5 . DT C 1 3 ? 19.662 15.015 10.251 1.00 16.61 ? 3 DT C C5 1
ATOM 267 C C7 . DT C 1 3 ? 20.186 14.644 11.606 1.00 16.82 ? 3 DT C C7 1
ATOM 268 C C6 . DT C 1 3 ? 20.197 14.499 9.132 1.00 17.25 ? 3 DT C C6 1
ATOM 269 P P . DA C 1 4 ? 23.257 14.521 3.399 1.00 23.02 ? 4 DA C P 1
ATOM 270 O OP1 . DA C 1 4 ? 23.528 13.898 2.093 1.00 24.19 ? 4 DA C OP1 1
ATOM 271 O OP2 . DA C 1 4 ? 24.367 14.766 4.345 1.00 22.96 ? 4 DA C OP2 1
ATOM 272 O "O5'" . DA C 1 4 ? 22.496 15.893 3.151 1.00 22.14 ? 4 DA C "O5'" 1
ATOM 273 C "C5'" . DA C 1 4 ? 21.257 15.912 2.477 1.00 20.61 ? 4 DA C "C5'" 1
ATOM 274 C "C4'" . DA C 1 4 ? 20.641 17.292 2.581 1.00 19.88 ? 4 DA C "C4'" 1
ATOM 275 O "O4'" . DA C 1 4 ? 20.095 17.492 3.909 1.00 19.15 ? 4 DA C "O4'" 1
ATOM 276 C "C3'" . DA C 1 4 ? 21.601 18.447 2.339 1.00 19.57 ? 4 DA C "C3'" 1
ATOM 277 O "O3'" . DA C 1 4 ? 20.971 19.334 1.437 1.00 20.53 ? 4 DA C "O3'" 1
ATOM 278 C "C2'" . DA C 1 4 ? 21.787 19.069 3.723 1.00 18.68 ? 4 DA C "C2'" 1
ATOM 279 C "C1'" . DA C 1 4 ? 20.449 18.768 4.390 1.00 17.09 ? 4 DA C "C1'" 1
ATOM 280 N N9 . DA C 1 4 ? 20.483 18.681 5.847 1.00 14.45 ? 4 DA C N9 1
ATOM 281 C C8 . DA C 1 4 ? 21.359 17.954 6.603 1.00 13.14 ? 4 DA C C8 1
ATOM 282 N N7 . DA C 1 4 ? 21.156 18.044 7.890 1.00 12.14 ? 4 DA C N7 1
ATOM 283 C C5 . DA C 1 4 ? 20.063 18.884 7.985 1.00 11.89 ? 4 DA C C5 1
ATOM 284 C C6 . DA C 1 4 ? 19.349 19.379 9.092 1.00 10.85 ? 4 DA C C6 1
ATOM 285 N N6 . DA C 1 4 ? 19.669 19.071 10.349 1.00 10.48 ? 4 DA C N6 1
ATOM 286 N N1 . DA C 1 4 ? 18.305 20.203 8.855 1.00 11.08 ? 4 DA C N1 1
ATOM 287 C C2 . DA C 1 4 ? 17.991 20.511 7.586 1.00 11.19 ? 4 DA C C2 1
ATOM 288 N N3 . DA C 1 4 ? 18.587 20.102 6.465 1.00 12.34 ? 4 DA C N3 1
ATOM 289 C C4 . DA C 1 4 ? 19.628 19.287 6.735 1.00 12.60 ? 4 DA C C4 1
ATOM 290 P P . DC C 1 5 ? 21.774 20.487 0.694 1.00 20.65 ? 5 DC C P 1
ATOM 291 O OP1 . DC C 1 5 ? 21.046 20.756 -0.561 1.00 21.71 ? 5 DC C OP1 1
ATOM 292 O OP2 . DC C 1 5 ? 23.209 20.148 0.689 1.00 20.81 ? 5 DC C OP2 1
ATOM 293 O "O5'" . DC C 1 5 ? 21.615 21.732 1.662 1.00 20.38 ? 5 DC C "O5'" 1
ATOM 294 C "C5'" . DC C 1 5 ? 20.383 22.402 1.805 1.00 19.26 ? 5 DC C "C5'" 1
ATOM 295 C "C4'" . DC C 1 5 ? 20.464 23.306 3.016 1.00 18.40 ? 5 DC C "C4'" 1
ATOM 296 O "O4'" . DC C 1 5 ? 20.563 22.495 4.212 1.00 17.07 ? 5 DC C "O4'" 1
ATOM 297 C "C3'" . DC C 1 5 ? 21.677 24.237 3.034 1.00 18.53 ? 5 DC C "C3'" 1
ATOM 298 O "O3'" . DC C 1 5 ? 21.228 25.588 3.007 1.00 19.55 ? 5 DC C "O3'" 1
ATOM 299 C "C2'" . DC C 1 5 ? 22.392 23.894 4.338 1.00 17.72 ? 5 DC C "C2'" 1
ATOM 300 C "C1'" . DC C 1 5 ? 21.252 23.283 5.146 1.00 16.30 ? 5 DC C "C1'" 1
ATOM 301 N N1 . DC C 1 5 ? 21.687 22.500 6.346 1.00 13.98 ? 5 DC C N1 1
ATOM 302 C C2 . DC C 1 5 ? 21.037 22.703 7.568 1.00 12.14 ? 5 DC C C2 1
ATOM 303 O O2 . DC C 1 5 ? 20.108 23.510 7.638 1.00 11.36 ? 5 DC C O2 1
ATOM 304 N N3 . DC C 1 5 ? 21.453 22.002 8.651 1.00 11.36 ? 5 DC C N3 1
ATOM 305 C C4 . DC C 1 5 ? 22.461 21.140 8.546 1.00 10.86 ? 5 DC C C4 1
ATOM 306 N N4 . DC C 1 5 ? 22.829 20.474 9.636 1.00 10.62 ? 5 DC C N4 1
ATOM 307 C C5 . DC C 1 5 ? 23.134 20.913 7.311 1.00 11.86 ? 5 DC C C5 1
ATOM 308 C C6 . DC C 1 5 ? 22.722 21.612 6.248 1.00 13.07 ? 5 DC C C6 1
ATOM 309 P P . DG C 1 6 ? 22.236 26.810 2.833 1.00 19.85 ? 6 DG C P 1
ATOM 310 O OP1 . DG C 1 6 ? 21.498 27.870 2.124 1.00 20.76 ? 6 DG C OP1 1
ATOM 311 O OP2 . DG C 1 6 ? 23.514 26.301 2.315 1.00 20.24 ? 6 DG C OP2 1
ATOM 312 O "O5'" . DG C 1 6 ? 22.516 27.282 4.331 1.00 20.47 ? 6 DG C "O5'" 1
ATOM 313 C "C5'" . DG C 1 6 ? 21.654 28.204 4.978 1.00 19.28 ? 6 DG C "C5'" 1
ATOM 314 C "C4'" . DG C 1 6 ? 22.447 29.196 5.803 1.00 19.51 ? 6 DG C "C4'" 1
ATOM 315 O "O4'" . DG C 1 6 ? 23.187 28.498 6.822 1.00 19.41 ? 6 DG C "O4'" 1
ATOM 316 C "C3'" . DG C 1 6 ? 23.513 29.988 5.070 1.00 19.60 ? 6 DG C "C3'" 1
ATOM 317 O "O3'" . DG C 1 6 ? 22.894 31.087 4.436 1.00 20.57 ? 6 DG C "O3'" 1
ATOM 318 C "C2'" . DG C 1 6 ? 24.422 30.425 6.214 1.00 18.97 ? 6 DG C "C2'" 1
ATOM 319 C "C1'" . DG C 1 6 ? 24.277 29.286 7.228 1.00 18.37 ? 6 DG C "C1'" 1
ATOM 320 N N9 . DG C 1 6 ? 25.404 28.364 7.321 1.00 17.83 ? 6 DG C N9 1
ATOM 321 C C8 . DG C 1 6 ? 26.263 27.998 6.318 1.00 17.55 ? 6 DG C C8 1
ATOM 322 N N7 . DG C 1 6 ? 27.174 27.154 6.689 1.00 17.55 ? 6 DG C N7 1
ATOM 323 C C5 . DG C 1 6 ? 26.902 26.937 8.026 1.00 17.09 ? 6 DG C C5 1
ATOM 324 C C6 . DG C 1 6 ? 27.555 26.097 8.956 1.00 17.14 ? 6 DG C C6 1
ATOM 325 O O6 . DG C 1 6 ? 28.534 25.368 8.774 1.00 17.51 ? 6 DG C O6 1
ATOM 326 N N1 . DG C 1 6 ? 26.962 26.159 10.210 1.00 16.98 ? 6 DG C N1 1
ATOM 327 C C2 . DG C 1 6 ? 25.872 26.936 10.521 1.00 17.05 ? 6 DG C C2 1
ATOM 328 N N2 . DG C 1 6 ? 25.446 26.870 11.786 1.00 18.24 ? 6 DG C N2 1
ATOM 329 N N3 . DG C 1 6 ? 25.242 27.719 9.659 1.00 17.22 ? 6 DG C N3 1
ATOM 330 C C4 . DG C 1 6 ? 25.812 27.671 8.431 1.00 17.17 ? 6 DG C C4 1
ATOM 331 O "O5'" . DC D 1 1 ? 13.947 23.404 20.018 1.00 34.47 ? 7 DC D "O5'" 1
ATOM 332 C "C5'" . DC D 1 1 ? 14.628 22.415 20.767 1.00 34.01 ? 7 DC D "C5'" 1
ATOM 333 C "C4'" . DC D 1 1 ? 15.730 23.063 21.578 1.00 33.85 ? 7 DC D "C4'" 1
ATOM 334 O "O4'" . DC D 1 1 ? 15.303 23.213 22.956 1.00 34.72 ? 7 DC D "O4'" 1
ATOM 335 C "C3'" . DC D 1 1 ? 17.043 22.287 21.582 1.00 33.21 ? 7 DC D "C3'" 1
ATOM 336 O "O3'" . DC D 1 1 ? 18.097 23.103 21.070 1.00 30.99 ? 7 DC D "O3'" 1
ATOM 337 C "C2'" . DC D 1 1 ? 17.287 21.904 23.044 1.00 34.35 ? 7 DC D "C2'" 1
ATOM 338 C "C1'" . DC D 1 1 ? 16.342 22.809 23.833 1.00 35.31 ? 7 DC D "C1'" 1
ATOM 339 N N1 . DC D 1 1 ? 15.733 22.197 25.083 1.00 36.08 ? 7 DC D N1 1
ATOM 340 C C2 . DC D 1 1 ? 16.171 22.616 26.354 1.00 36.28 ? 7 DC D C2 1
ATOM 341 O O2 . DC D 1 1 ? 17.063 23.470 26.443 1.00 36.25 ? 7 DC D O2 1
ATOM 342 N N3 . DC D 1 1 ? 15.603 22.060 27.464 1.00 36.31 ? 7 DC D N3 1
ATOM 343 C C4 . DC D 1 1 ? 14.640 21.138 27.343 1.00 35.82 ? 7 DC D C4 1
ATOM 344 N N4 . DC D 1 1 ? 14.118 20.628 28.460 1.00 35.55 ? 7 DC D N4 1
ATOM 345 C C5 . DC D 1 1 ? 14.175 20.698 26.067 1.00 35.94 ? 7 DC D C5 1
ATOM 346 C C6 . DC D 1 1 ? 14.742 21.249 24.983 1.00 36.20 ? 7 DC D C6 1
ATOM 347 P P . DG D 1 2 ? 18.525 23.076 19.526 1.00 28.13 ? 8 DG D P 1
ATOM 348 O OP1 . DG D 1 2 ? 18.391 21.704 18.996 1.00 28.94 ? 8 DG D OP1 1
ATOM 349 O OP2 . DG D 1 2 ? 19.821 23.781 19.452 1.00 27.50 ? 8 DG D OP2 1
ATOM 350 O "O5'" . DG D 1 2 ? 17.397 23.927 18.798 1.00 25.25 ? 8 DG D "O5'" 1
ATOM 351 C "C5'" . DG D 1 2 ? 17.710 25.217 18.373 1.00 20.68 ? 8 DG D "C5'" 1
ATOM 352 C "C4'" . DG D 1 2 ? 16.943 25.690 17.161 1.00 16.90 ? 8 DG D "C4'" 1
ATOM 353 O "O4'" . DG D 1 2 ? 17.958 26.039 16.209 1.00 13.48 ? 8 DG D "O4'" 1
ATOM 354 C "C3'" . DG D 1 2 ? 16.006 24.718 16.461 1.00 17.19 ? 8 DG D "C3'" 1
ATOM 355 O "O3'" . DG D 1 2 ? 14.701 25.134 16.765 1.00 22.12 ? 8 DG D "O3'" 1
ATOM 356 C "C2'" . DG D 1 2 ? 16.262 24.980 14.985 1.00 13.30 ? 8 DG D "C2'" 1
ATOM 357 C "C1'" . DG D 1 2 ? 17.695 25.443 14.969 1.00 7.86 ? 8 DG D "C1'" 1
ATOM 358 N N9 . DG D 1 2 ? 18.688 24.406 14.725 1.00 2.00 ? 8 DG D N9 1
ATOM 359 C C8 . DG D 1 2 ? 19.494 23.705 15.586 1.00 2.00 ? 8 DG D C8 1
ATOM 360 N N7 . DG D 1 2 ? 20.302 22.868 14.987 1.00 2.00 ? 8 DG D N7 1
ATOM 361 C C5 . DG D 1 2 ? 20.004 23.029 13.644 1.00 2.00 ? 8 DG D C5 1
ATOM 362 C C6 . DG D 1 2 ? 20.524 22.428 12.471 1.00 2.00 ? 8 DG D C6 1
ATOM 363 O O6 . DG D 1 2 ? 21.396 21.568 12.338 1.00 2.00 ? 8 DG D O6 1
ATOM 364 N N1 . DG D 1 2 ? 19.932 22.926 11.318 1.00 2.00 ? 8 DG D N1 1
ATOM 365 C C2 . DG D 1 2 ? 18.936 23.875 11.294 1.00 2.00 ? 8 DG D C2 1
ATOM 366 N N2 . DG D 1 2 ? 18.491 24.265 10.107 1.00 2.00 ? 8 DG D N2 1
ATOM 367 N N3 . DG D 1 2 ? 18.451 24.452 12.358 1.00 2.00 ? 8 DG D N3 1
ATOM 368 C C4 . DG D 1 2 ? 19.025 23.980 13.483 1.00 2.00 ? 8 DG D C4 1
ATOM 369 P P . DT D 1 3 ? 13.366 24.408 16.265 1.00 24.50 ? 9 DT D P 1
ATOM 370 O OP1 . DT D 1 3 ? 12.258 25.267 16.759 1.00 25.70 ? 9 DT D OP1 1
ATOM 371 O OP2 . DT D 1 3 ? 13.453 22.981 16.645 1.00 23.94 ? 9 DT D OP2 1
ATOM 372 O "O5'" . DT D 1 3 ? 13.372 24.517 14.681 1.00 24.09 ? 9 DT D "O5'" 1
ATOM 373 C "C5'" . DT D 1 3 ? 12.838 25.661 14.043 1.00 23.51 ? 9 DT D "C5'" 1
ATOM 374 C "C4'" . DT D 1 3 ? 12.761 25.398 12.555 1.00 22.79 ? 9 DT D "C4'" 1
ATOM 375 O "O4'" . DT D 1 3 ? 14.001 24.795 12.124 1.00 22.55 ? 9 DT D "O4'" 1
ATOM 376 C "C3'" . DT D 1 3 ? 11.670 24.434 12.130 1.00 23.02 ? 9 DT D "C3'" 1
ATOM 377 O "O3'" . DT D 1 3 ? 11.091 24.944 10.934 1.00 24.17 ? 9 DT D "O3'" 1
ATOM 378 C "C2'" . DT D 1 3 ? 12.421 23.119 11.925 1.00 22.22 ? 9 DT D "C2'" 1
ATOM 379 C "C1'" . DT D 1 3 ? 13.773 23.598 11.422 1.00 20.55 ? 9 DT D "C1'" 1
ATOM 380 N N1 . DT D 1 3 ? 14.900 22.660 11.718 1.00 18.39 ? 9 DT D N1 1
ATOM 381 C C2 . DT D 1 3 ? 15.665 22.117 10.703 1.00 17.02 ? 9 DT D C2 1
ATOM 382 O O2 . DT D 1 3 ? 15.499 22.346 9.526 1.00 17.14 ? 9 DT D O2 1
ATOM 383 N N3 . DT D 1 3 ? 16.657 21.272 11.118 1.00 15.89 ? 9 DT D N3 1
ATOM 384 C C4 . DT D 1 3 ? 16.961 20.923 12.419 1.00 15.94 ? 9 DT D C4 1
ATOM 385 O O4 . DT D 1 3 ? 17.879 20.155 12.691 1.00 16.45 ? 9 DT D O4 1
ATOM 386 C C5 . DT D 1 3 ? 16.128 21.526 13.431 1.00 15.94 ? 9 DT D C5 1
ATOM 387 C C7 . DT D 1 3 ? 16.335 21.241 14.887 1.00 15.77 ? 9 DT D C7 1
ATOM 388 C C6 . DT D 1 3 ? 15.159 22.347 13.034 1.00 17.18 ? 9 DT D C6 1
ATOM 389 P P . DA D 1 4 ? 9.957 24.159 10.127 1.00 24.12 ? 10 DA D P 1
ATOM 390 O OP1 . DA D 1 4 ? 9.130 25.171 9.431 1.00 24.06 ? 10 DA D OP1 1
ATOM 391 O OP2 . DA D 1 4 ? 9.348 23.156 11.031 1.00 23.35 ? 10 DA D OP2 1
ATOM 392 O "O5'" . DA D 1 4 ? 10.809 23.370 9.026 1.00 22.71 ? 10 DA D "O5'" 1
ATOM 393 C "C5'" . DA D 1 4 ? 11.367 24.038 7.896 1.00 19.00 ? 10 DA D "C5'" 1
ATOM 394 C "C4'" . DA D 1 4 ? 11.621 23.055 6.767 1.00 15.93 ? 10 DA D "C4'" 1
ATOM 395 O "O4'" . DA D 1 4 ? 12.723 22.189 7.112 1.00 13.24 ? 10 DA D "O4'" 1
ATOM 396 C "C3'" . DA D 1 4 ? 10.452 22.133 6.444 1.00 15.61 ? 10 DA D "C3'" 1
ATOM 397 O "O3'" . DA D 1 4 ? 10.347 21.998 5.044 1.00 17.83 ? 10 DA D "O3'" 1
ATOM 398 C "C2'" . DA D 1 4 ? 10.814 20.817 7.125 1.00 12.65 ? 10 DA D "C2'" 1
ATOM 399 C "C1'" . DA D 1 4 ? 12.333 20.831 7.095 1.00 8.81 ? 10 DA D "C1'" 1
ATOM 400 N N9 . DA D 1 4 ? 12.944 20.222 8.268 1.00 3.21 ? 10 DA D N9 1
ATOM 401 C C8 . DA D 1 4 ? 12.574 20.417 9.566 1.00 2.00 ? 10 DA D C8 1
ATOM 402 N N7 . DA D 1 4 ? 13.334 19.742 10.397 1.00 2.00 ? 10 DA D N7 1
ATOM 403 C C5 . DA D 1 4 ? 14.254 19.058 9.616 1.00 2.00 ? 10 DA D C5 1
ATOM 404 C C6 . DA D 1 4 ? 15.302 18.173 9.928 1.00 2.00 ? 10 DA D C6 1
ATOM 405 N N6 . DA D 1 4 ? 15.652 17.798 11.155 1.00 3.15 ? 10 DA D N6 1
ATOM 406 N N1 . DA D 1 4 ? 16.000 17.684 8.900 1.00 2.00 ? 10 DA D N1 1
ATOM 407 C C2 . DA D 1 4 ? 15.647 18.053 7.666 1.00 2.00 ? 10 DA D C2 1
ATOM 408 N N3 . DA D 1 4 ? 14.700 18.882 7.244 1.00 2.00 ? 10 DA D N3 1
ATOM 409 C C4 . DA D 1 4 ? 14.020 19.362 8.292 1.00 2.00 ? 10 DA D C4 1
ATOM 410 P P . DC D 1 5 ? 9.080 21.333 4.346 1.00 18.58 ? 11 DC D P 1
ATOM 411 O OP1 . DC D 1 5 ? 8.929 21.954 3.021 1.00 19.24 ? 11 DC D OP1 1
ATOM 412 O OP2 . DC D 1 5 ? 7.940 21.321 5.280 1.00 19.37 ? 11 DC D OP2 1
ATOM 413 O "O5'" . DC D 1 5 ? 9.583 19.836 4.181 1.00 18.74 ? 11 DC D "O5'" 1
ATOM 414 C "C5'" . DC D 1 5 ? 10.756 19.525 3.439 1.00 17.99 ? 11 DC D "C5'" 1
ATOM 415 C "C4'" . DC D 1 5 ? 11.148 18.076 3.661 1.00 17.48 ? 11 DC D "C4'" 1
ATOM 416 O "O4'" . DC D 1 5 ? 11.753 17.947 4.971 1.00 16.78 ? 11 DC D "O4'" 1
ATOM 417 C "C3'" . DC D 1 5 ? 9.998 17.063 3.621 1.00 17.23 ? 11 DC D "C3'" 1
ATOM 418 O "O3'" . DC D 1 5 ? 10.344 15.984 2.740 1.00 17.82 ? 11 DC D "O3'" 1
ATOM 419 C "C2'" . DC D 1 5 ? 9.875 16.625 5.082 1.00 16.08 ? 11 DC D "C2'" 1
ATOM 420 C "C1'" . DC D 1 5 ? 11.343 16.704 5.486 1.00 15.45 ? 11 DC D "C1'" 1
ATOM 421 N N1 . DC D 1 5 ? 11.631 16.607 6.947 1.00 13.59 ? 11 DC D N1 1
ATOM 422 C C2 . DC D 1 5 ? 12.725 15.853 7.382 1.00 12.60 ? 11 DC D C2 1
ATOM 423 O O2 . DC D 1 5 ? 13.447 15.277 6.564 1.00 12.92 ? 11 DC D O2 1
ATOM 424 N N3 . DC D 1 5 ? 12.967 15.761 8.707 1.00 12.33 ? 11 DC D N3 1
ATOM 425 C C4 . DC D 1 5 ? 12.174 16.381 9.578 1.00 12.48 ? 11 DC D C4 1
ATOM 426 N N4 . DC D 1 5 ? 12.463 16.260 10.878 1.00 13.25 ? 11 DC D N4 1
ATOM 427 C C5 . DC D 1 5 ? 11.056 17.157 9.160 1.00 12.89 ? 11 DC D C5 1
ATOM 428 C C6 . DC D 1 5 ? 10.822 17.237 7.847 1.00 13.39 ? 11 DC D C6 1
ATOM 429 P P . DG D 1 6 ? 9.261 14.983 2.118 1.00 16.33 ? 12 DG D P 1
ATOM 430 O OP1 . DG D 1 6 ? 9.907 14.290 0.988 1.00 17.22 ? 12 DG D OP1 1
ATOM 431 O OP2 . DG D 1 6 ? 8.004 15.712 1.926 1.00 16.34 ? 12 DG D OP2 1
ATOM 432 O "O5'" . DG D 1 6 ? 9.022 13.924 3.277 1.00 17.58 ? 12 DG D "O5'" 1
ATOM 433 C "C5'" . DG D 1 6 ? 10.056 13.077 3.733 1.00 17.22 ? 12 DG D "C5'" 1
ATOM 434 C "C4'" . DG D 1 6 ? 9.438 11.883 4.418 1.00 18.02 ? 12 DG D "C4'" 1
ATOM 435 O "O4'" . DG D 1 6 ? 8.687 12.350 5.561 1.00 18.88 ? 12 DG D "O4'" 1
ATOM 436 C "C3'" . DG D 1 6 ? 8.455 11.122 3.547 1.00 18.66 ? 12 DG D "C3'" 1
ATOM 437 O "O3'" . DG D 1 6 ? 9.083 9.969 3.010 1.00 18.69 ? 12 DG D "O3'" 1
ATOM 438 C "C2'" . DG D 1 6 ? 7.309 10.793 4.503 1.00 18.91 ? 12 DG D "C2'" 1
ATOM 439 C "C1'" . DG D 1 6 ? 7.323 11.989 5.447 1.00 19.05 ? 12 DG D "C1'" 1
ATOM 440 N N9 . DG D 1 6 ? 6.602 13.178 4.997 1.00 19.94 ? 12 DG D N9 1
ATOM 441 C C8 . DG D 1 6 ? 5.867 13.333 3.846 1.00 20.34 ? 12 DG D C8 1
ATOM 442 N N7 . DG D 1 6 ? 5.349 14.516 3.704 1.00 20.88 ? 12 DG D N7 1
ATOM 443 C C5 . DG D 1 6 ? 5.767 15.199 4.829 1.00 21.48 ? 12 DG D C5 1
ATOM 444 C C6 . DG D 1 6 ? 5.516 16.533 5.225 1.00 22.16 ? 12 DG D C6 1
ATOM 445 O O6 . DG D 1 6 ? 4.847 17.387 4.634 1.00 23.17 ? 12 DG D O6 1
ATOM 446 N N1 . DG D 1 6 ? 6.127 16.846 6.437 1.00 22.31 ? 12 DG D N1 1
ATOM 447 C C2 . DG D 1 6 ? 6.887 15.972 7.176 1.00 22.11 ? 12 DG D C2 1
ATOM 448 N N2 . DG D 1 6 ? 7.389 16.449 8.325 1.00 23.17 ? 12 DG D N2 1
ATOM 449 N N3 . DG D 1 6 ? 7.132 14.716 6.818 1.00 21.96 ? 12 DG D N3 1
ATOM 450 C C4 . DG D 1 6 ? 6.542 14.393 5.636 1.00 21.23 ? 12 DG D C4 1
HETATM 451 CA CA . CA E 2 . ? 11.402 14.626 -0.941 1.00 36.44 ? 1 CA B CA 1
HETATM 452 C C1 . BER F 3 . ? 22.371 25.635 11.021 1.00 18.98 ? 7 BER C C1 1
HETATM 453 C C2 . BER F 3 . ? 21.552 26.387 12.005 1.00 18.81 ? 7 BER C C2 1
HETATM 454 N N1 . BER F 3 . ? 22.251 25.914 9.631 1.00 19.01 ? 7 BER C N1 1
HETATM 455 C C3 . BER F 3 . ? 23.315 24.721 11.496 1.00 19.07 ? 7 BER C C3 1
HETATM 456 C C4 . BER F 3 . ? 20.514 27.351 11.530 1.00 18.59 ? 7 BER C C4 1
HETATM 457 C C5 . BER F 3 . ? 21.894 26.280 13.356 1.00 18.38 ? 7 BER C C5 1
HETATM 458 C C6 . BER F 3 . ? 23.039 25.271 8.734 1.00 19.33 ? 7 BER C C6 1
HETATM 459 C C7 . BER F 3 . ? 21.276 26.894 9.108 1.00 18.93 ? 7 BER C C7 1
HETATM 460 C C8 . BER F 3 . ? 24.132 24.046 10.598 1.00 19.57 ? 7 BER C C8 1
HETATM 461 C C9 . BER F 3 . ? 19.761 28.086 12.451 1.00 17.85 ? 7 BER C C9 1
HETATM 462 C C10 . BER F 3 . ? 20.194 27.440 10.052 1.00 18.67 ? 7 BER C C10 1
HETATM 463 C C11 . BER F 3 . ? 21.151 27.035 14.239 1.00 18.42 ? 7 BER C C11 1
HETATM 464 C C12 . BER F 3 . ? 23.992 24.328 9.144 1.00 19.61 ? 7 BER C C12 1
HETATM 465 C C13 . BER F 3 . ? 25.071 23.124 11.049 1.00 19.61 ? 7 BER C C13 1
HETATM 466 C C14 . BER F 3 . ? 20.096 27.934 13.789 1.00 18.21 ? 7 BER C C14 1
HETATM 467 O O1 . BER F 3 . ? 21.239 27.111 15.592 1.00 19.34 ? 7 BER C O1 1
HETATM 468 C C15 . BER F 3 . ? 24.890 23.595 8.197 1.00 20.63 ? 7 BER C C15 1
HETATM 469 C C16 . BER F 3 . ? 25.900 22.433 10.164 1.00 20.18 ? 7 BER C C16 1
HETATM 470 O O2 . BER F 3 . ? 19.572 28.528 14.896 1.00 19.35 ? 7 BER C O2 1
HETATM 471 C C17 . BER F 3 . ? 20.287 28.082 16.068 1.00 19.16 ? 7 BER C C17 1
HETATM 472 C C18 . BER F 3 . ? 25.861 22.604 8.778 1.00 20.95 ? 7 BER C C18 1
HETATM 473 O O3 . BER F 3 . ? 24.755 23.824 6.849 1.00 22.47 ? 7 BER C O3 1
HETATM 474 O O4 . BER F 3 . ? 26.767 21.838 8.062 1.00 22.88 ? 7 BER C O4 1
HETATM 475 C C19 . BER F 3 . ? 25.824 24.241 5.997 1.00 22.09 ? 7 BER C C19 1
HETATM 476 C C20 . BER F 3 . ? 26.545 21.227 6.784 1.00 24.23 ? 7 BER C C20 1
HETATM 477 O O . HOH G 4 . ? 9.549 8.187 4.995 1.00 15.59 ? 1 HOH D O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1 1 DC DC A . n
A 1 2 DG 2 2 2 DG DG A . n
A 1 3 DT 3 3 3 DT DT A . n
A 1 4 DA 4 4 4 DA DA A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DG 6 6 6 DG DG A . n
B 1 1 DC 1 7 7 DC DC B . n
B 1 2 DG 2 8 8 DG DG B . n
B 1 3 DT 3 9 9 DT DT B . n
B 1 4 DA 4 10 10 DA DA B . n
B 1 5 DC 5 11 11 DC DC B . n
B 1 6 DG 6 12 12 DG DG B . n
C 1 1 DC 1 1 1 DC DC C . n
C 1 2 DG 2 2 2 DG DG C . n
C 1 3 DT 3 3 3 DT DT C . n
C 1 4 DA 4 4 4 DA DA C . n
C 1 5 DC 5 5 5 DC DC C . n
C 1 6 DG 6 6 6 DG DG C . n
D 1 1 DC 1 7 7 DC DC D . n
D 1 2 DG 2 8 8 DG DG D . n
D 1 3 DT 3 9 9 DT DT D . n
D 1 4 DA 4 10 10 DA DA D . n
D 1 5 DC 5 11 11 DC DC D . n
D 1 6 DG 6 12 12 DG DG D . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CA 1 1 1 CA CA B .
F 3 BER 1 7 1 BER BER C .
G 4 HOH 1 1 1 HOH HOH D .
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text 'MINOR GROOVE BINDER'
#
loop_
_pdbx_struct_assembly.id
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
1 author_and_software_defined_assembly PISA dimeric 2
2 author_and_software_defined_assembly PISA dimeric 2
#
loop_
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
_pdbx_struct_assembly_gen.asym_id_list
1 1 A,B,E
2 1 C,D,F,G
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 360 ?
1 MORE -2 ?
1 'SSA (A^2)' 2700 ?
2 'ABSA (A^2)' 360 ?
2 MORE -2 ?
2 'SSA (A^2)' 2700 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_struct_conn_angle.id 1
_pdbx_struct_conn_angle.ptnr1_label_atom_id OP1
_pdbx_struct_conn_angle.ptnr1_label_alt_id ?
_pdbx_struct_conn_angle.ptnr1_label_asym_id B
_pdbx_struct_conn_angle.ptnr1_label_comp_id DG
_pdbx_struct_conn_angle.ptnr1_label_seq_id 6
_pdbx_struct_conn_angle.ptnr1_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr1_auth_asym_id B
_pdbx_struct_conn_angle.ptnr1_auth_comp_id DG
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 12
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr1_symmetry 1_555
_pdbx_struct_conn_angle.ptnr2_label_atom_id CA
_pdbx_struct_conn_angle.ptnr2_label_alt_id ?
_pdbx_struct_conn_angle.ptnr2_label_asym_id E
_pdbx_struct_conn_angle.ptnr2_label_comp_id CA
_pdbx_struct_conn_angle.ptnr2_label_seq_id .
_pdbx_struct_conn_angle.ptnr2_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr2_auth_asym_id B
_pdbx_struct_conn_angle.ptnr2_auth_comp_id CA
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 1
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr2_symmetry 1_555
_pdbx_struct_conn_angle.ptnr3_label_atom_id OP1
_pdbx_struct_conn_angle.ptnr3_label_alt_id ?
_pdbx_struct_conn_angle.ptnr3_label_asym_id D
_pdbx_struct_conn_angle.ptnr3_label_comp_id DG
_pdbx_struct_conn_angle.ptnr3_label_seq_id 6
_pdbx_struct_conn_angle.ptnr3_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr3_auth_asym_id D
_pdbx_struct_conn_angle.ptnr3_auth_comp_id DG
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 12
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr3_symmetry 1_555
_pdbx_struct_conn_angle.value 79.6
_pdbx_struct_conn_angle.value_esd ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2011-05-04
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2023-11-01
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' pdbx_initial_refinement_model
5 3 'Structure model' struct_conn
6 3 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id'
10 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
11 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
12 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
13 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id'
17 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
18 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
19 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_phasing_MR.entry_id 3NP6
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details ?
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 3.500
_pdbx_phasing_MR.d_res_low_rotation 39.420
_pdbx_phasing_MR.d_res_high_translation 3.500
_pdbx_phasing_MR.d_res_low_translation 39.420
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling'
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ?
2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing
http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ?
3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
5 CrysalisPro . ? ? ? ? 'data collection' ? ? ?
6 XDS . ? ? ? ? 'data reduction' ? ? ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.91 108.30 2.61 0.30 N
2 1 C6 B DA 10 ? ? N1 B DA 10 ? ? C2 B DA 10 ? ? 114.17 118.60 -4.43 0.60 N
3 1 C8 B DA 10 ? ? N9 B DA 10 ? ? C4 B DA 10 ? ? 103.33 105.80 -2.47 0.40 N
4 1 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 122.87 118.90 3.97 0.60 N
5 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 112.49 108.30 4.19 0.30 N
6 1 "O4'" D DC 11 ? ? "C1'" D DC 11 ? ? N1 D DC 11 ? ? 111.08 108.30 2.78 0.30 N
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A DC 1 ? "O5'" ? A DC 1 "O5'"
2 1 Y 1 A DC 1 ? "C5'" ? A DC 1 "C5'"
3 1 Y 1 A DC 1 ? "C4'" ? A DC 1 "C4'"
4 1 Y 1 A DC 1 ? "O4'" ? A DC 1 "O4'"
5 1 Y 1 A DC 1 ? "C3'" ? A DC 1 "C3'"
6 1 Y 1 A DC 1 ? "C2'" ? A DC 1 "C2'"
7 1 Y 1 A DC 1 ? "C1'" ? A DC 1 "C1'"
8 1 Y 1 A DC 1 ? N1 ? A DC 1 N1
9 1 Y 1 A DC 1 ? C2 ? A DC 1 C2
10 1 Y 1 A DC 1 ? O2 ? A DC 1 O2
11 1 Y 1 A DC 1 ? N3 ? A DC 1 N3
12 1 Y 1 A DC 1 ? C4 ? A DC 1 C4
13 1 Y 1 A DC 1 ? N4 ? A DC 1 N4
14 1 Y 1 A DC 1 ? C5 ? A DC 1 C5
15 1 Y 1 A DC 1 ? C6 ? A DC 1 C6
16 1 Y 1 C DC 1 ? "O5'" ? C DC 1 "O5'"
17 1 Y 1 C DC 1 ? "C5'" ? C DC 1 "C5'"
18 1 Y 1 C DC 1 ? "C4'" ? C DC 1 "C4'"
19 1 Y 1 C DC 1 ? "O4'" ? C DC 1 "O4'"
20 1 Y 1 C DC 1 ? "C3'" ? C DC 1 "C3'"
21 1 Y 1 C DC 1 ? "C2'" ? C DC 1 "C2'"
22 1 Y 1 C DC 1 ? "C1'" ? C DC 1 "C1'"
23 1 Y 1 C DC 1 ? N1 ? C DC 1 N1
24 1 Y 1 C DC 1 ? C2 ? C DC 1 C2
25 1 Y 1 C DC 1 ? O2 ? C DC 1 O2
26 1 Y 1 C DC 1 ? N3 ? C DC 1 N3
27 1 Y 1 C DC 1 ? C4 ? C DC 1 C4
28 1 Y 1 C DC 1 ? N4 ? C DC 1 N4
29 1 Y 1 C DC 1 ? C5 ? C DC 1 C5
30 1 Y 1 C DC 1 ? C6 ? C DC 1 C6
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
BER C1 C Y N 1
BER C2 C Y N 2
BER N1 N Y N 3
BER C3 C Y N 4
BER C4 C Y N 5
BER C5 C Y N 6
BER C6 C Y N 7
BER C7 C N N 8
BER C8 C Y N 9
BER C9 C Y N 10
BER C10 C N N 11
BER C11 C Y N 12
BER C12 C Y N 13
BER C13 C Y N 14
BER C14 C Y N 15
BER O1 O N N 16
BER C15 C Y N 17
BER C16 C Y N 18
BER O2 O N N 19
BER C17 C N N 20
BER C18 C Y N 21
BER O3 O N N 22
BER O4 O N N 23
BER C19 C N N 24
BER C20 C N N 25
BER H31 H N N 26
BER H51 H N N 27
BER H61 H N N 28
BER H71 H N N 29
BER H72 H N N 30
BER H91 H N N 31
BER H101 H N N 32
BER H102 H N N 33
BER H131 H N N 34
BER H161 H N N 35
BER H171 H N N 36
BER H172 H N N 37
BER H191 H N N 38
BER H192 H N N 39
BER H193 H N N 40
BER H201 H N N 41
BER H202 H N N 42
BER H203 H N N 43
CA CA CA N N 44
DA OP3 O N N 45
DA P P N N 46
DA OP1 O N N 47
DA OP2 O N N 48
DA "O5'" O N N 49
DA "C5'" C N N 50
DA "C4'" C N R 51
DA "O4'" O N N 52
DA "C3'" C N S 53
DA "O3'" O N N 54
DA "C2'" C N N 55
DA "C1'" C N R 56
DA N9 N Y N 57
DA C8 C Y N 58
DA N7 N Y N 59
DA C5 C Y N 60
DA C6 C Y N 61
DA N6 N N N 62
DA N1 N Y N 63
DA C2 C Y N 64
DA N3 N Y N 65
DA C4 C Y N 66
DA HOP3 H N N 67
DA HOP2 H N N 68
DA "H5'" H N N 69
DA "H5''" H N N 70
DA "H4'" H N N 71
DA "H3'" H N N 72
DA "HO3'" H N N 73
DA "H2'" H N N 74
DA "H2''" H N N 75
DA "H1'" H N N 76
DA H8 H N N 77
DA H61 H N N 78
DA H62 H N N 79
DA H2 H N N 80
DC OP3 O N N 81
DC P P N N 82
DC OP1 O N N 83
DC OP2 O N N 84
DC "O5'" O N N 85
DC "C5'" C N N 86
DC "C4'" C N R 87
DC "O4'" O N N 88
DC "C3'" C N S 89
DC "O3'" O N N 90
DC "C2'" C N N 91
DC "C1'" C N R 92
DC N1 N N N 93
DC C2 C N N 94
DC O2 O N N 95
DC N3 N N N 96
DC C4 C N N 97
DC N4 N N N 98
DC C5 C N N 99
DC C6 C N N 100
DC HOP3 H N N 101
DC HOP2 H N N 102
DC "H5'" H N N 103
DC "H5''" H N N 104
DC "H4'" H N N 105
DC "H3'" H N N 106
DC "HO3'" H N N 107
DC "H2'" H N N 108
DC "H2''" H N N 109
DC "H1'" H N N 110
DC H41 H N N 111
DC H42 H N N 112
DC H5 H N N 113
DC H6 H N N 114
DG OP3 O N N 115
DG P P N N 116
DG OP1 O N N 117
DG OP2 O N N 118
DG "O5'" O N N 119
DG "C5'" C N N 120
DG "C4'" C N R 121
DG "O4'" O N N 122
DG "C3'" C N S 123
DG "O3'" O N N 124
DG "C2'" C N N 125
DG "C1'" C N R 126
DG N9 N Y N 127
DG C8 C Y N 128
DG N7 N Y N 129
DG C5 C Y N 130
DG C6 C N N 131
DG O6 O N N 132
DG N1 N N N 133
DG C2 C N N 134
DG N2 N N N 135
DG N3 N N N 136
DG C4 C Y N 137
DG HOP3 H N N 138
DG HOP2 H N N 139
DG "H5'" H N N 140
DG "H5''" H N N 141
DG "H4'" H N N 142
DG "H3'" H N N 143
DG "HO3'" H N N 144
DG "H2'" H N N 145
DG "H2''" H N N 146
DG "H1'" H N N 147
DG H8 H N N 148
DG H1 H N N 149
DG H21 H N N 150
DG H22 H N N 151
DT OP3 O N N 152
DT P P N N 153
DT OP1 O N N 154
DT OP2 O N N 155
DT "O5'" O N N 156
DT "C5'" C N N 157
DT "C4'" C N R 158
DT "O4'" O N N 159
DT "C3'" C N S 160
DT "O3'" O N N 161
DT "C2'" C N N 162
DT "C1'" C N R 163
DT N1 N N N 164
DT C2 C N N 165
DT O2 O N N 166
DT N3 N N N 167
DT C4 C N N 168
DT O4 O N N 169
DT C5 C N N 170
DT C7 C N N 171
DT C6 C N N 172
DT HOP3 H N N 173
DT HOP2 H N N 174
DT "H5'" H N N 175
DT "H5''" H N N 176
DT "H4'" H N N 177
DT "H3'" H N N 178
DT "HO3'" H N N 179
DT "H2'" H N N 180
DT "H2''" H N N 181
DT "H1'" H N N 182
DT H3 H N N 183
DT H71 H N N 184
DT H72 H N N 185
DT H73 H N N 186
DT H6 H N N 187
HOH O O N N 188
HOH H1 H N N 189
HOH H2 H N N 190
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BER C1 C2 sing Y N 1
BER C1 N1 doub Y N 2
BER C1 C3 sing Y N 3
BER C2 C4 doub Y N 4
BER C2 C5 sing Y N 5
BER N1 C6 sing Y N 6
BER N1 C7 sing N N 7
BER C3 C8 doub Y N 8
BER C3 H31 sing N N 9
BER C4 C9 sing Y N 10
BER C4 C10 sing N N 11
BER C5 C11 doub Y N 12
BER C5 H51 sing N N 13
BER C6 C12 doub Y N 14
BER C6 H61 sing N N 15
BER C7 C10 sing N N 16
BER C7 H71 sing N N 17
BER C7 H72 sing N N 18
BER C8 C12 sing Y N 19
BER C8 C13 sing Y N 20
BER C9 C14 doub Y N 21
BER C9 H91 sing N N 22
BER C10 H101 sing N N 23
BER C10 H102 sing N N 24
BER C11 C14 sing Y N 25
BER C11 O1 sing N N 26
BER C12 C15 sing Y N 27
BER C13 C16 doub Y N 28
BER C13 H131 sing N N 29
BER C14 O2 sing N N 30
BER O1 C17 sing N N 31
BER C15 C18 doub Y N 32
BER C15 O3 sing N N 33
BER C16 C18 sing Y N 34
BER C16 H161 sing N N 35
BER O2 C17 sing N N 36
BER C17 H171 sing N N 37
BER C17 H172 sing N N 38
BER C18 O4 sing N N 39
BER O3 C19 sing N N 40
BER O4 C20 sing N N 41
BER C19 H191 sing N N 42
BER C19 H192 sing N N 43
BER C19 H193 sing N N 44
BER C20 H201 sing N N 45
BER C20 H202 sing N N 46
BER C20 H203 sing N N 47
DA OP3 P sing N N 48
DA OP3 HOP3 sing N N 49
DA P OP1 doub N N 50
DA P OP2 sing N N 51
DA P "O5'" sing N N 52
DA OP2 HOP2 sing N N 53
DA "O5'" "C5'" sing N N 54
DA "C5'" "C4'" sing N N 55
DA "C5'" "H5'" sing N N 56
DA "C5'" "H5''" sing N N 57
DA "C4'" "O4'" sing N N 58
DA "C4'" "C3'" sing N N 59
DA "C4'" "H4'" sing N N 60
DA "O4'" "C1'" sing N N 61
DA "C3'" "O3'" sing N N 62
DA "C3'" "C2'" sing N N 63
DA "C3'" "H3'" sing N N 64
DA "O3'" "HO3'" sing N N 65
DA "C2'" "C1'" sing N N 66
DA "C2'" "H2'" sing N N 67
DA "C2'" "H2''" sing N N 68
DA "C1'" N9 sing N N 69
DA "C1'" "H1'" sing N N 70
DA N9 C8 sing Y N 71
DA N9 C4 sing Y N 72
DA C8 N7 doub Y N 73
DA C8 H8 sing N N 74
DA N7 C5 sing Y N 75
DA C5 C6 sing Y N 76
DA C5 C4 doub Y N 77
DA C6 N6 sing N N 78
DA C6 N1 doub Y N 79
DA N6 H61 sing N N 80
DA N6 H62 sing N N 81
DA N1 C2 sing Y N 82
DA C2 N3 doub Y N 83
DA C2 H2 sing N N 84
DA N3 C4 sing Y N 85
DC OP3 P sing N N 86
DC OP3 HOP3 sing N N 87
DC P OP1 doub N N 88
DC P OP2 sing N N 89
DC P "O5'" sing N N 90
DC OP2 HOP2 sing N N 91
DC "O5'" "C5'" sing N N 92
DC "C5'" "C4'" sing N N 93
DC "C5'" "H5'" sing N N 94
DC "C5'" "H5''" sing N N 95
DC "C4'" "O4'" sing N N 96
DC "C4'" "C3'" sing N N 97
DC "C4'" "H4'" sing N N 98
DC "O4'" "C1'" sing N N 99
DC "C3'" "O3'" sing N N 100
DC "C3'" "C2'" sing N N 101
DC "C3'" "H3'" sing N N 102
DC "O3'" "HO3'" sing N N 103
DC "C2'" "C1'" sing N N 104
DC "C2'" "H2'" sing N N 105
DC "C2'" "H2''" sing N N 106
DC "C1'" N1 sing N N 107
DC "C1'" "H1'" sing N N 108
DC N1 C2 sing N N 109
DC N1 C6 sing N N 110
DC C2 O2 doub N N 111
DC C2 N3 sing N N 112
DC N3 C4 doub N N 113
DC C4 N4 sing N N 114
DC C4 C5 sing N N 115
DC N4 H41 sing N N 116
DC N4 H42 sing N N 117
DC C5 C6 doub N N 118
DC C5 H5 sing N N 119
DC C6 H6 sing N N 120
DG OP3 P sing N N 121
DG OP3 HOP3 sing N N 122
DG P OP1 doub N N 123
DG P OP2 sing N N 124
DG P "O5'" sing N N 125
DG OP2 HOP2 sing N N 126
DG "O5'" "C5'" sing N N 127
DG "C5'" "C4'" sing N N 128
DG "C5'" "H5'" sing N N 129
DG "C5'" "H5''" sing N N 130
DG "C4'" "O4'" sing N N 131
DG "C4'" "C3'" sing N N 132
DG "C4'" "H4'" sing N N 133
DG "O4'" "C1'" sing N N 134
DG "C3'" "O3'" sing N N 135
DG "C3'" "C2'" sing N N 136
DG "C3'" "H3'" sing N N 137
DG "O3'" "HO3'" sing N N 138
DG "C2'" "C1'" sing N N 139
DG "C2'" "H2'" sing N N 140
DG "C2'" "H2''" sing N N 141
DG "C1'" N9 sing N N 142
DG "C1'" "H1'" sing N N 143
DG N9 C8 sing Y N 144
DG N9 C4 sing Y N 145
DG C8 N7 doub Y N 146
DG C8 H8 sing N N 147
DG N7 C5 sing Y N 148
DG C5 C6 sing N N 149
DG C5 C4 doub Y N 150
DG C6 O6 doub N N 151
DG C6 N1 sing N N 152
DG N1 C2 sing N N 153
DG N1 H1 sing N N 154
DG C2 N2 sing N N 155
DG C2 N3 doub N N 156
DG N2 H21 sing N N 157
DG N2 H22 sing N N 158
DG N3 C4 sing N N 159
DT OP3 P sing N N 160
DT OP3 HOP3 sing N N 161
DT P OP1 doub N N 162
DT P OP2 sing N N 163
DT P "O5'" sing N N 164
DT OP2 HOP2 sing N N 165
DT "O5'" "C5'" sing N N 166
DT "C5'" "C4'" sing N N 167
DT "C5'" "H5'" sing N N 168
DT "C5'" "H5''" sing N N 169
DT "C4'" "O4'" sing N N 170
DT "C4'" "C3'" sing N N 171
DT "C4'" "H4'" sing N N 172
DT "O4'" "C1'" sing N N 173
DT "C3'" "O3'" sing N N 174
DT "C3'" "C2'" sing N N 175
DT "C3'" "H3'" sing N N 176
DT "O3'" "HO3'" sing N N 177
DT "C2'" "C1'" sing N N 178
DT "C2'" "H2'" sing N N 179
DT "C2'" "H2''" sing N N 180
DT "C1'" N1 sing N N 181
DT "C1'" "H1'" sing N N 182
DT N1 C2 sing N N 183
DT N1 C6 sing N N 184
DT C2 O2 doub N N 185
DT C2 N3 sing N N 186
DT N3 C4 sing N N 187
DT N3 H3 sing N N 188
DT C4 O4 doub N N 189
DT C4 C5 sing N N 190
DT C5 C7 sing N N 191
DT C5 C6 doub N N 192
DT C7 H71 sing N N 193
DT C7 H72 sing N N 194
DT C7 H73 sing N N 195
DT C6 H6 sing N N 196
HOH O H1 sing N N 197
HOH O H2 sing N N 198
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3NP6 'double helix'
3NP6 'b-form double helix'
3NP6 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 B DG 2 1_555 A DC 5 1_555 -0.241 -0.176 0.041 -12.422 -2.953 1.525 1 B_DG8:DC5_A B 8 ? A 5 ? 19 1
1 B DT 3 1_555 A DA 4 1_555 -0.280 0.105 -0.071 2.974 -5.637 -2.967 2 B_DT9:DA4_A B 9 ? A 4 ? 20 1
1 B DA 4 1_555 A DT 3 1_555 0.194 -0.119 0.147 2.760 -6.299 -2.803 3 B_DA10:DT3_A B 10 ? A 3 ? 20 1
1 B DC 5 1_555 A DG 2 1_555 0.478 -0.087 0.142 5.535 -0.591 3.858 4 B_DC11:DG2_A B 11 ? A 2 ? 19 1
1 C DG 2 1_555 D DC 5 1_555 -0.243 -0.301 0.040 -5.985 0.988 2.581 5 C_DG2:DC11_D C 2 ? D 11 ? 19 1
1 C DT 3 1_555 D DA 4 1_555 -0.474 -0.329 0.306 -0.963 -5.912 -0.672 6 C_DT3:DA10_D C 3 ? D 10 ? 20 1
1 C DA 4 1_555 D DT 3 1_555 -0.109 0.012 0.092 0.480 -1.774 -0.391 7 C_DA4:DT9_D C 4 ? D 9 ? 20 1
1 C DC 5 1_555 D DG 2 1_555 0.457 0.175 -0.123 16.259 3.015 2.526 8 C_DC5:DG8_D C 5 ? D 8 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 B DG 2 1_555 A DC 5 1_555 B DT 3 1_555 A DA 4 1_555 -1.025 -0.562 3.061 2.669 1.546 30.479 -1.343 2.424 2.931 2.932 -5.060
30.631 1 BB_DG8DT9:DA4DC5_AA B 8 ? A 5 ? B 9 ? A 4 ?
1 B DT 3 1_555 A DA 4 1_555 B DA 4 1_555 A DT 3 1_555 -0.133 -0.171 3.242 -2.256 2.449 39.916 -0.527 -0.062 3.229 3.581 3.297
40.049 2 BB_DT9DA10:DT3DA4_AA B 9 ? A 4 ? B 10 ? A 3 ?
1 B DA 4 1_555 A DT 3 1_555 B DC 5 1_555 A DG 2 1_555 0.462 -0.197 3.397 -0.239 2.622 28.359 -1.021 -0.996 3.362 5.336 0.487
28.479 3 BB_DA10DC11:DG2DT3_AA B 10 ? A 3 ? B 11 ? A 2 ?
1 B DC 5 1_555 A DG 2 1_555 C DG 2 1_555 D DC 5 1_555 -0.016 0.948 3.516 0.774 4.400 -70.766 -0.980 0.015 3.459 -3.796 0.668
-70.888 4 BC_DC11DG2:DC11DG2_DA B 11 ? A 2 ? C 2 ? D 11 ?
1 C DG 2 1_555 D DC 5 1_555 C DT 3 1_555 D DA 4 1_555 -0.485 -0.440 3.319 -2.016 1.313 24.370 -1.451 0.507 3.320 3.101 4.761
24.487 5 CC_DG2DT3:DA10DC11_DD C 2 ? D 11 ? C 3 ? D 10 ?
1 C DT 3 1_555 D DA 4 1_555 C DA 4 1_555 D DT 3 1_555 0.270 -0.226 3.218 1.970 1.836 40.484 -0.527 -0.173 3.214 2.650 -2.843
40.570 6 CC_DT3DA4:DT9DA10_DD C 3 ? D 10 ? C 4 ? D 9 ?
1 C DA 4 1_555 D DT 3 1_555 C DC 5 1_555 D DG 2 1_555 1.011 -0.509 3.128 -1.075 4.716 30.255 -1.839 -2.114 2.979 8.963 2.044
30.631 7 CC_DA4DC5:DG8DT9_DD C 4 ? D 9 ? C 5 ? D 8 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'CALCIUM ION' CA
3 BERBERINE BER
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1XCS
_pdbx_initial_refinement_model.details 'PDB ENTRY 1XCS'
#
loop_
_pdbx_reflns_twin.domain_id
_pdbx_reflns_twin.crystal_id
_pdbx_reflns_twin.diffrn_id
_pdbx_reflns_twin.fraction
_pdbx_reflns_twin.operator
_pdbx_reflns_twin.type
_pdbx_reflns_twin.mean_F_square_over_mean_F2
_pdbx_reflns_twin.mean_I2_over_mean_I_square
1 1 1 0.914 'H, K, L' ? ? ?
2 1 1 0.086 -h,-k,l ? ? ?
#