data_3LLN
#
_entry.id 3LLN
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.378
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3LLN pdb_00003lln 10.2210/pdb3lln/pdb
NDB NA0435 ? ?
RCSB RCSB057429 ? ?
WWPDB D_1000057429 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 2H0N 'CONTAINS THE SAME TYPE OF SYNTHETIC NUCLEOSIDES' unspecified
PDB 2P8D 'CONTAINS THE SAME TYPE OF SYNTHETIC NUCLEOSIDES' unspecified
PDB 3FL6 'IDENTICAL SEQUENCE' unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3LLN
_pdbx_database_status.recvd_initial_deposition_date 2010-01-29
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Robeyns, K.' 1
'Herdewijn, P.' 2
'Van Meervelt, L.' 3
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Comparison between the orthorhombic and tetragonal forms of the heptamer sequence d[GCG(xT)GCG]/d(CGCACGC)'
'Acta Crystallogr.,Sect.F' 66 1028 1031 2010 ? DK 1744-3091 ? ? 20823518 10.1107/S1744309110031696
1 'Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC.'
J.Am.Chem.Soc. 130 1979 1984 2008 JACSAT US 0002-7863 0004 ? 18198873 10.1021/ja077313f
2 'Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(CGCGAATTCGCG).'
'Nucleic Acids Res.' 36 1407 1414 2008 NARHAD UK 0305-1048 0389 ? 18160414 10.1093/nar/gkm1132
3 'Direct observation of two cyclohexenyl (CeNA) ring conformations in duplex DNA'
'Artificial DNA' 1 1 7 2010 ? US 1949-095X ? ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Robeyns, K.' 1 ?
primary 'Herdewijn, P.' 2 ?
primary 'Van Meervelt, L.' 3 ?
1 'Robeyns, K.' 4 ?
1 'Herdewijn, P.' 5 ?
1 'Van Meervelt, L.' 6 ?
2 'Robeyns, K.' 7 ?
2 'Herdewijn, P.' 8 ?
2 'Van Meervelt, L.' 9 ?
3 'Robeyns, K.' 10 ?
3 'Herdewijn, P.' 11 ?
3 'Van Meervelt, L.' 12 ?
#
_cell.entry_id 3LLN
_cell.length_a 25.482
_cell.length_b 25.482
_cell.length_c 81.147
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3LLN
_symmetry.space_group_name_H-M 'P 41 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 92
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3')
;
2164.460 1 ? ? ? ?
2 polymer syn
;DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3')
;
2083.388 1 ? ? ? ?
3 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ?
4 water nat water 18.015 9 ? ? ? ?
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(XTR)(DG)(DC)(DG)' GCGTGCG A ?
2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DA)(DC)(DG)(DC)' CGCACGC B ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DC n
1 3 DG n
1 4 XTR n
1 5 DG n
1 6 DC n
1 7 DG n
2 1 DC n
2 2 DG n
2 3 DC n
2 4 DA n
2 5 DC n
2 6 DG n
2 7 DC n
#
loop_
_pdbx_entity_src_syn.entity_id
_pdbx_entity_src_syn.pdbx_src_id
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_entity_src_syn.pdbx_beg_seq_num
_pdbx_entity_src_syn.pdbx_end_seq_num
_pdbx_entity_src_syn.organism_scientific
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.details
1 1 sample ? ? ? ? ? 'SYNTHESIZED ON SOLID SUPPORT'
2 1 sample ? ? ? ? ? 'SYNTHESIZED ON SOLID SUPPORT'
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.entity_id
_struct_ref.pdbx_align_begin
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_db_isoform
1 PDB 3LLN 3LLN 1 ? ? ?
2 PDB 3LLN 3LLN 2 ? ? ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 3LLN A 1 ? 7 ? 3LLN 1 ? 7 ? 1 7
2 2 3LLN B 1 ? 7 ? 3LLN 11 ? 17 ? 11 17
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116
XTR 'DNA linking' n
'[(1R,4S,6S)-6-hydroxy-4-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclohex-2-en-1-yl]methyl dihydrogen phosphate' ?
'C12 H17 N2 O7 P' 332.246
#
_exptl.entry_id 3LLN
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews ?
_exptl_crystal.density_percent_sol ?
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 289
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.5
_exptl_crystal_grow.pdbx_details
;10%(V/V) 2-METHYL-2,4-PENTANEDIOL(MPD), 20MM COBALT HEXAMINE, 40MM POTASSIUM CACODYLATE BUFFERED AT PH=5.5, AND 80/12MM KCL/NACL, VAPOR DIFFUSION, HANGING DROP, temperature 289K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 225 mm CCD'
_diffrn_detector.pdbx_collection_date 2007-09-06
_diffrn_detector.details mirror
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'Double crystal Si(111)'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9537
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline X12
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9537
#
_reflns.entry_id 3LLN
_reflns.observed_criterion_sigma_I 0
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 18.55
_reflns.d_resolution_high 3
_reflns.number_obs 681
_reflns.number_all 681
_reflns.percent_possible_obs 99.6
_reflns.pdbx_Rmerge_I_obs 0.105
_reflns.pdbx_Rsym_value 0.105
_reflns.pdbx_netI_over_sigmaI 10.6
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 11.4
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 3
_reflns_shell.d_res_low 3.16
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs 0.174
_reflns_shell.pdbx_Rsym_value 0.174
_reflns_shell.meanI_over_sigI_obs 4.5
_reflns_shell.pdbx_redundancy 12.4
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 93
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 3LLN
_refine.ls_number_reflns_obs 678
_refine.ls_number_reflns_all 678
_refine.pdbx_ls_sigma_I 0
_refine.pdbx_ls_sigma_F 0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 18.15
_refine.ls_d_res_high 3.00
_refine.ls_percent_reflns_obs 98.55
_refine.ls_R_factor_obs .22599
_refine.ls_R_factor_all .22599
_refine.ls_R_factor_R_work .22599
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc .960
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 71.704
_refine.aniso_B[1][1] 6.73
_refine.aniso_B[2][2] 6.73
_refine.aniso_B[3][3] -13.45
_refine.aniso_B[1][2] .00
_refine.aniso_B[1][3] .00
_refine.aniso_B[2][3] .00
_refine.solvent_model_details 'BABINET MODEL WITH MASK'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.40
_refine.pdbx_solvent_ion_probe_radii .80
_refine.pdbx_solvent_shrinkage_radii .80
_refine.pdbx_ls_cross_valid_method NONE
_refine.details ?
_refine.pdbx_starting_model 'PDB entry 3FL6 (one biological unit)'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ISOTROPIC
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details NONE
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML .291
_refine.overall_SU_B 14.930
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 282
_refine_hist.pdbx_number_atoms_ligand 7
_refine_hist.number_atoms_solvent 9
_refine_hist.number_atoms_total 298
_refine_hist.d_res_high 3.00
_refine_hist.d_res_low 18.15
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d .012 .022 ? 323 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 1.943 2.922 ? 607 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr .122 .200 ? 53 'X-RAY DIFFRACTION' ?
r_gen_planes_refined .011 .020 ? 151 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 2.103 3.000 ? 321 'X-RAY DIFFRACTION' ?
r_scangle_it 3.229 4.500 ? 497 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 3.001
_refine_ls_shell.d_res_low 3.079
_refine_ls_shell.number_reflns_R_work 41
_refine_ls_shell.R_factor_R_work .195
_refine_ls_shell.percent_reflns_obs 100.00
_refine_ls_shell.R_factor_R_free ?
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free ?
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 678
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3LLN
_struct.title
'Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC).'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3LLN
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DOUBLE HELIX, CENA, SUGAR MODIFICATION, RIGHT-HANDED, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 3 "O3'" ? ? ? 1_555 A XTR 4 P ? ? A DG 3 A XTR 4 1_555 ? ? ? ? ? ? ? 1.624 ? ?
covale2 covale both ? A XTR 4 "O3'" ? ? ? 1_555 A DG 5 P ? ? A XTR 4 A DG 5 1_555 ? ? ? ? ? ? ? 1.603 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 1 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 1 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 1 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A XTR 4 N3 ? ? ? 1_555 B DA 4 N1 ? ? A XTR 4 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A XTR 4 O4 ? ? ? 1_555 B DA 4 N6 ? ? A XTR 4 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 5 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 5 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 5 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 6 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 6 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 6 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id A
_struct_site.pdbx_auth_comp_id NCO
_struct_site.pdbx_auth_seq_id 8
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 4
_struct_site.details 'BINDING SITE FOR RESIDUE NCO A 8'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 4 DC A 2 ? DC A 2 . ? 7_565 ?
2 AC1 4 XTR A 4 ? XTR A 4 . ? 1_555 ?
3 AC1 4 DG A 5 ? DG A 5 . ? 1_555 ?
4 AC1 4 DA B 4 ? DA B 14 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 3LLN
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 3LLN
_atom_sites.fract_transf_matrix[1][1] .039244
_atom_sites.fract_transf_matrix[1][2] .000000
_atom_sites.fract_transf_matrix[1][3] .000000
_atom_sites.fract_transf_matrix[2][1] .000000
_atom_sites.fract_transf_matrix[2][2] .039244
_atom_sites.fract_transf_matrix[2][3] .000000
_atom_sites.fract_transf_matrix[3][1] .000000
_atom_sites.fract_transf_matrix[3][2] .000000
_atom_sites.fract_transf_matrix[3][3] .012323
_atom_sites.fract_transf_vector[1] .00000
_atom_sites.fract_transf_vector[2] .00000
_atom_sites.fract_transf_vector[3] .00000
#
loop_
_atom_type.symbol
C
CO
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? -14.067 -7.141 8.347 1.00 58.77 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? -14.758 -6.663 9.544 1.00 61.05 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? -16.129 -6.231 9.082 1.00 61.60 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? -16.164 -4.777 9.126 1.00 59.75 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? -16.321 -6.648 7.619 1.00 63.27 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? -17.661 -7.143 7.302 1.00 67.72 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? -15.822 -5.416 6.842 1.00 61.88 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? -15.756 -4.255 7.859 1.00 59.37 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? -14.426 -3.616 7.981 1.00 55.97 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? -13.209 -4.258 8.096 1.00 53.99 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? -12.184 -3.472 8.210 1.00 50.56 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? -12.745 -2.211 8.177 1.00 51.47 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? -12.115 -0.945 8.261 1.00 50.87 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? -10.909 -0.698 8.382 1.00 50.20 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? -13.027 0.104 8.223 1.00 47.75 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? -14.371 -0.051 8.081 1.00 46.86 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? -15.054 1.091 8.043 1.00 42.22 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? -14.982 -1.234 7.981 1.00 49.39 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? -14.116 -2.273 8.044 1.00 52.28 ? 1 DG A C4 1
ATOM 20 P P . DC A 1 2 ? -18.591 -6.383 6.212 1.00 74.64 ? 2 DC A P 1
ATOM 21 O OP1 . DC A 1 2 ? -19.911 -7.065 6.170 1.00 72.80 ? 2 DC A OP1 1
ATOM 22 O OP2 . DC A 1 2 ? -17.812 -6.265 4.945 1.00 72.89 ? 2 DC A OP2 1
ATOM 23 O "O5'" . DC A 1 2 ? -18.772 -4.910 6.867 1.00 75.69 ? 2 DC A "O5'" 1
ATOM 24 C "C5'" . DC A 1 2 ? -19.377 -3.804 6.193 1.00 78.02 ? 2 DC A "C5'" 1
ATOM 25 C "C4'" . DC A 1 2 ? -18.526 -2.901 5.287 1.00 80.66 ? 2 DC A "C4'" 1
ATOM 26 O "O4'" . DC A 1 2 ? -17.137 -2.799 5.713 1.00 81.02 ? 2 DC A "O4'" 1
ATOM 27 C "C3'" . DC A 1 2 ? -18.450 -3.212 3.798 1.00 82.34 ? 2 DC A "C3'" 1
ATOM 28 O "O3'" . DC A 1 2 ? -19.233 -2.253 3.152 1.00 84.42 ? 2 DC A "O3'" 1
ATOM 29 C "C2'" . DC A 1 2 ? -16.978 -2.991 3.391 1.00 81.66 ? 2 DC A "C2'" 1
ATOM 30 C "C1'" . DC A 1 2 ? -16.395 -2.302 4.614 1.00 81.36 ? 2 DC A "C1'" 1
ATOM 31 N N1 . DC A 1 2 ? -14.919 -2.505 4.805 1.00 82.07 ? 2 DC A N1 1
ATOM 32 C C2 . DC A 1 2 ? -14.059 -1.391 4.927 1.00 83.30 ? 2 DC A C2 1
ATOM 33 O O2 . DC A 1 2 ? -14.530 -0.249 4.946 1.00 82.54 ? 2 DC A O2 1
ATOM 34 N N3 . DC A 1 2 ? -12.714 -1.579 5.055 1.00 83.78 ? 2 DC A N3 1
ATOM 35 C C4 . DC A 1 2 ? -12.207 -2.812 5.016 1.00 83.70 ? 2 DC A C4 1
ATOM 36 N N4 . DC A 1 2 ? -10.886 -2.965 5.140 1.00 83.00 ? 2 DC A N4 1
ATOM 37 C C5 . DC A 1 2 ? -13.055 -3.950 4.856 1.00 84.15 ? 2 DC A C5 1
ATOM 38 C C6 . DC A 1 2 ? -14.377 -3.753 4.734 1.00 83.22 ? 2 DC A C6 1
ATOM 39 P P . DG A 1 3 ? -20.396 -2.723 2.177 1.00 85.13 ? 3 DG A P 1
ATOM 40 O OP1 . DG A 1 3 ? -21.370 -3.498 2.992 1.00 86.01 ? 3 DG A OP1 1
ATOM 41 O OP2 . DG A 1 3 ? -19.764 -3.362 1.003 1.00 85.09 ? 3 DG A OP2 1
ATOM 42 O "O5'" . DG A 1 3 ? -21.016 -1.322 1.706 1.00 84.92 ? 3 DG A "O5'" 1
ATOM 43 C "C5'" . DG A 1 3 ? -20.697 -0.123 2.452 1.00 84.33 ? 3 DG A "C5'" 1
ATOM 44 C "C4'" . DG A 1 3 ? -19.794 0.842 1.689 1.00 83.74 ? 3 DG A "C4'" 1
ATOM 45 O "O4'" . DG A 1 3 ? -18.404 0.498 1.913 1.00 81.49 ? 3 DG A "O4'" 1
ATOM 46 C "C3'" . DG A 1 3 ? -19.960 0.899 0.169 1.00 84.70 ? 3 DG A "C3'" 1
ATOM 47 O "O3'" . DG A 1 3 ? -19.815 2.238 -0.313 1.00 87.22 ? 3 DG A "O3'" 1
ATOM 48 C "C2'" . DG A 1 3 ? -18.796 0.036 -0.295 1.00 82.91 ? 3 DG A "C2'" 1
ATOM 49 C "C1'" . DG A 1 3 ? -17.745 0.569 0.663 1.00 81.47 ? 3 DG A "C1'" 1
ATOM 50 N N9 . DG A 1 3 ? -16.529 -0.237 0.727 1.00 79.99 ? 3 DG A N9 1
ATOM 51 C C8 . DG A 1 3 ? -16.481 -1.605 0.576 1.00 79.05 ? 3 DG A C8 1
ATOM 52 N N7 . DG A 1 3 ? -15.285 -2.090 0.682 1.00 78.31 ? 3 DG A N7 1
ATOM 53 C C5 . DG A 1 3 ? -14.492 -0.971 0.914 1.00 77.90 ? 3 DG A C5 1
ATOM 54 C C6 . DG A 1 3 ? -13.100 -0.911 1.127 1.00 77.79 ? 3 DG A C6 1
ATOM 55 O O6 . DG A 1 3 ? -12.296 -1.849 1.162 1.00 78.54 ? 3 DG A O6 1
ATOM 56 N N1 . DG A 1 3 ? -12.655 0.396 1.349 1.00 75.48 ? 3 DG A N1 1
ATOM 57 C C2 . DG A 1 3 ? -13.471 1.502 1.361 1.00 74.39 ? 3 DG A C2 1
ATOM 58 N N2 . DG A 1 3 ? -12.861 2.679 1.584 1.00 71.94 ? 3 DG A N2 1
ATOM 59 N N3 . DG A 1 3 ? -14.785 1.449 1.160 1.00 74.69 ? 3 DG A N3 1
ATOM 60 C C4 . DG A 1 3 ? -15.230 0.184 0.950 1.00 77.03 ? 3 DG A C4 1
HETATM 61 C "C4'" . XTR A 1 4 ? -17.918 5.563 -1.816 1.00 82.87 ? 4 XTR A "C4'" 1
HETATM 62 C "C7'" . XTR A 1 4 ? -16.407 4.013 -0.528 1.00 83.30 ? 4 XTR A "C7'" 1
HETATM 63 C "C6'" . XTR A 1 4 ? -17.561 4.687 -0.629 1.00 83.24 ? 4 XTR A "C6'" 1
HETATM 64 C "C1'" . XTR A 1 4 ? -15.290 4.020 -1.554 1.00 82.90 ? 4 XTR A "C1'" 1
HETATM 65 O O4 . XTR A 1 4 ? -13.550 -0.986 -2.854 1.00 83.99 ? 4 XTR A O4 1
HETATM 66 C C4 . XTR A 1 4 ? -13.963 0.127 -2.569 1.00 83.82 ? 4 XTR A C4 1
HETATM 67 C C5 . XTR A 1 4 ? -15.376 0.427 -2.497 1.00 84.29 ? 4 XTR A C5 1
HETATM 68 C C5M . XTR A 1 4 ? -16.395 -0.645 -2.786 1.00 83.45 ? 4 XTR A C5M 1
HETATM 69 C C6 . XTR A 1 4 ? -15.735 1.681 -2.170 1.00 83.07 ? 4 XTR A C6 1
HETATM 70 N N3 . XTR A 1 4 ? -13.110 1.181 -2.301 1.00 82.47 ? 4 XTR A N3 1
HETATM 71 C C2 . XTR A 1 4 ? -13.467 2.457 -1.967 1.00 82.03 ? 4 XTR A C2 1
HETATM 72 O O2 . XTR A 1 4 ? -12.640 3.317 -1.736 1.00 81.79 ? 4 XTR A O2 1
HETATM 73 N N1 . XTR A 1 4 ? -14.821 2.680 -1.898 1.00 82.28 ? 4 XTR A N1 1
HETATM 74 C "C2'" . XTR A 1 4 ? -15.710 4.683 -2.853 1.00 83.10 ? 4 XTR A "C2'" 1
HETATM 75 C "C3'" . XTR A 1 4 ? -16.715 5.818 -2.732 1.00 82.89 ? 4 XTR A "C3'" 1
HETATM 76 P P . XTR A 1 4 ? -19.996 2.582 -1.890 1.00 90.40 ? 4 XTR A P 1
HETATM 77 O OP1 . XTR A 1 4 ? -21.363 2.154 -2.325 1.00 88.69 ? 4 XTR A OP1 1
HETATM 78 O OP2 . XTR A 1 4 ? -18.796 2.094 -2.629 1.00 89.84 ? 4 XTR A OP2 1
HETATM 79 O "O5'" . XTR A 1 4 ? -19.948 4.201 -1.897 1.00 86.52 ? 4 XTR A "O5'" 1
HETATM 80 C "C5'" . XTR A 1 4 ? -19.005 4.930 -2.664 1.00 83.47 ? 4 XTR A "C5'" 1
HETATM 81 O "O3'" . XTR A 1 4 ? -15.982 7.002 -2.447 1.00 81.73 ? 4 XTR A "O3'" 1
ATOM 82 P P . DG A 1 5 ? -15.357 7.821 -3.675 1.00 82.79 ? 5 DG A P 1
ATOM 83 O OP1 . DG A 1 5 ? -16.005 9.158 -3.688 1.00 84.71 ? 5 DG A OP1 1
ATOM 84 O OP2 . DG A 1 5 ? -15.414 6.965 -4.892 1.00 80.54 ? 5 DG A OP2 1
ATOM 85 O "O5'" . DG A 1 5 ? -13.815 7.956 -3.251 1.00 78.09 ? 5 DG A "O5'" 1
ATOM 86 C "C5'" . DG A 1 5 ? -12.851 8.490 -4.177 1.00 72.01 ? 5 DG A "C5'" 1
ATOM 87 C "C4'" . DG A 1 5 ? -12.418 7.531 -5.293 1.00 68.99 ? 5 DG A "C4'" 1
ATOM 88 O "O4'" . DG A 1 5 ? -12.707 6.099 -5.050 1.00 67.83 ? 5 DG A "O4'" 1
ATOM 89 C "C3'" . DG A 1 5 ? -13.023 7.860 -6.660 1.00 65.78 ? 5 DG A "C3'" 1
ATOM 90 O "O3'" . DG A 1 5 ? -11.991 7.996 -7.647 1.00 64.47 ? 5 DG A "O3'" 1
ATOM 91 C "C2'" . DG A 1 5 ? -13.878 6.624 -6.923 1.00 63.46 ? 5 DG A "C2'" 1
ATOM 92 C "C1'" . DG A 1 5 ? -12.937 5.575 -6.342 1.00 62.10 ? 5 DG A "C1'" 1
ATOM 93 N N9 . DG A 1 5 ? -13.494 4.216 -6.234 1.00 56.53 ? 5 DG A N9 1
ATOM 94 C C8 . DG A 1 5 ? -14.782 3.882 -6.582 1.00 54.06 ? 5 DG A C8 1
ATOM 95 N N7 . DG A 1 5 ? -15.050 2.611 -6.495 1.00 50.76 ? 5 DG A N7 1
ATOM 96 C C5 . DG A 1 5 ? -13.865 2.034 -6.072 1.00 49.43 ? 5 DG A C5 1
ATOM 97 C C6 . DG A 1 5 ? -13.583 0.663 -5.822 1.00 46.50 ? 5 DG A C6 1
ATOM 98 O O6 . DG A 1 5 ? -14.353 -0.315 -5.919 1.00 38.95 ? 5 DG A O6 1
ATOM 99 N N1 . DG A 1 5 ? -12.253 0.482 -5.445 1.00 44.71 ? 5 DG A N1 1
ATOM 100 C C2 . DG A 1 5 ? -11.337 1.495 -5.344 1.00 46.24 ? 5 DG A C2 1
ATOM 101 N N2 . DG A 1 5 ? -10.109 1.137 -4.963 1.00 46.21 ? 5 DG A N2 1
ATOM 102 N N3 . DG A 1 5 ? -11.586 2.787 -5.587 1.00 48.73 ? 5 DG A N3 1
ATOM 103 C C4 . DG A 1 5 ? -12.879 2.999 -5.939 1.00 52.26 ? 5 DG A C4 1
ATOM 104 P P . DC A 1 6 ? -12.369 8.224 -9.203 1.00 66.71 ? 6 DC A P 1
ATOM 105 O OP1 . DC A 1 6 ? -12.821 9.635 -9.332 1.00 63.48 ? 6 DC A OP1 1
ATOM 106 O OP2 . DC A 1 6 ? -13.260 7.113 -9.656 1.00 65.74 ? 6 DC A OP2 1
ATOM 107 O "O5'" . DC A 1 6 ? -10.986 7.950 -9.975 1.00 64.36 ? 6 DC A "O5'" 1
ATOM 108 C "C5'" . DC A 1 6 ? -9.832 7.609 -9.206 1.00 66.97 ? 6 DC A "C5'" 1
ATOM 109 C "C4'" . DC A 1 6 ? -9.291 6.209 -9.453 1.00 67.87 ? 6 DC A "C4'" 1
ATOM 110 O "O4'" . DC A 1 6 ? -10.073 5.160 -8.815 1.00 67.26 ? 6 DC A "O4'" 1
ATOM 111 C "C3'" . DC A 1 6 ? -9.130 5.807 -10.912 1.00 69.42 ? 6 DC A "C3'" 1
ATOM 112 O "O3'" . DC A 1 6 ? -7.806 5.420 -11.002 1.00 71.43 ? 6 DC A "O3'" 1
ATOM 113 C "C2'" . DC A 1 6 ? -10.017 4.581 -11.056 1.00 67.22 ? 6 DC A "C2'" 1
ATOM 114 C "C1'" . DC A 1 6 ? -10.050 4.024 -9.642 1.00 63.90 ? 6 DC A "C1'" 1
ATOM 115 N N1 . DC A 1 6 ? -11.273 3.204 -9.441 1.00 61.59 ? 6 DC A N1 1
ATOM 116 C C2 . DC A 1 6 ? -11.092 1.835 -9.215 1.00 60.71 ? 6 DC A C2 1
ATOM 117 O O2 . DC A 1 6 ? -9.931 1.393 -9.166 1.00 63.12 ? 6 DC A O2 1
ATOM 118 N N3 . DC A 1 6 ? -12.179 1.042 -9.063 1.00 58.44 ? 6 DC A N3 1
ATOM 119 C C4 . DC A 1 6 ? -13.402 1.578 -9.143 1.00 59.88 ? 6 DC A C4 1
ATOM 120 N N4 . DC A 1 6 ? -14.434 0.741 -8.990 1.00 58.30 ? 6 DC A N4 1
ATOM 121 C C5 . DC A 1 6 ? -13.623 2.983 -9.376 1.00 59.97 ? 6 DC A C5 1
ATOM 122 C C6 . DC A 1 6 ? -12.533 3.754 -9.524 1.00 60.66 ? 6 DC A C6 1
ATOM 123 P P . DG A 1 7 ? -6.952 5.629 -12.323 1.00 75.17 ? 7 DG A P 1
ATOM 124 O OP1 . DG A 1 7 ? -5.611 5.037 -12.005 1.00 75.08 ? 7 DG A OP1 1
ATOM 125 O OP2 . DG A 1 7 ? -7.079 7.031 -12.803 1.00 70.83 ? 7 DG A OP2 1
ATOM 126 O "O5'" . DG A 1 7 ? -7.746 4.745 -13.394 1.00 75.29 ? 7 DG A "O5'" 1
ATOM 127 C "C5'" . DG A 1 7 ? -7.493 3.347 -13.380 1.00 77.17 ? 7 DG A "C5'" 1
ATOM 128 C "C4'" . DG A 1 7 ? -8.266 2.766 -14.523 1.00 78.44 ? 7 DG A "C4'" 1
ATOM 129 O "O4'" . DG A 1 7 ? -9.652 3.051 -14.243 1.00 79.59 ? 7 DG A "O4'" 1
ATOM 130 C "C3'" . DG A 1 7 ? -7.944 3.484 -15.816 1.00 80.12 ? 7 DG A "C3'" 1
ATOM 131 O "O3'" . DG A 1 7 ? -6.900 2.790 -16.480 1.00 80.77 ? 7 DG A "O3'" 1
ATOM 132 C "C2'" . DG A 1 7 ? -9.282 3.456 -16.547 1.00 81.28 ? 7 DG A "C2'" 1
ATOM 133 C "C1'" . DG A 1 7 ? -10.269 3.617 -15.382 1.00 83.03 ? 7 DG A "C1'" 1
ATOM 134 N N9 . DG A 1 7 ? -10.670 4.999 -15.087 1.00 85.94 ? 7 DG A N9 1
ATOM 135 C C8 . DG A 1 7 ? -10.136 6.112 -15.689 1.00 88.31 ? 7 DG A C8 1
ATOM 136 N N7 . DG A 1 7 ? -10.670 7.238 -15.300 1.00 89.17 ? 7 DG A N7 1
ATOM 137 C C5 . DG A 1 7 ? -11.611 6.859 -14.356 1.00 88.37 ? 7 DG A C5 1
ATOM 138 C C6 . DG A 1 7 ? -12.479 7.673 -13.585 1.00 89.15 ? 7 DG A C6 1
ATOM 139 O O6 . DG A 1 7 ? -12.572 8.909 -13.590 1.00 90.35 ? 7 DG A O6 1
ATOM 140 N N1 . DG A 1 7 ? -13.298 6.923 -12.743 1.00 88.40 ? 7 DG A N1 1
ATOM 141 C C2 . DG A 1 7 ? -13.265 5.554 -12.665 1.00 87.19 ? 7 DG A C2 1
ATOM 142 N N2 . DG A 1 7 ? -14.134 5.027 -11.794 1.00 87.30 ? 7 DG A N2 1
ATOM 143 N N3 . DG A 1 7 ? -12.452 4.780 -13.384 1.00 86.14 ? 7 DG A N3 1
ATOM 144 C C4 . DG A 1 7 ? -11.637 5.485 -14.210 1.00 86.76 ? 7 DG A C4 1
ATOM 145 O "O5'" . DC B 2 1 ? -12.095 -6.622 -13.453 1.00 86.75 ? 11 DC B "O5'" 1
ATOM 146 C "C5'" . DC B 2 1 ? -11.702 -6.300 -12.118 1.00 89.83 ? 11 DC B "C5'" 1
ATOM 147 C "C4'" . DC B 2 1 ? -12.131 -7.397 -11.152 1.00 90.47 ? 11 DC B "C4'" 1
ATOM 148 O "O4'" . DC B 2 1 ? -13.170 -6.921 -10.262 1.00 88.88 ? 11 DC B "O4'" 1
ATOM 149 C "C3'" . DC B 2 1 ? -12.692 -8.668 -11.810 1.00 91.40 ? 11 DC B "C3'" 1
ATOM 150 O "O3'" . DC B 2 1 ? -12.398 -9.887 -11.091 1.00 92.83 ? 11 DC B "O3'" 1
ATOM 151 C "C2'" . DC B 2 1 ? -14.200 -8.414 -11.855 1.00 89.47 ? 11 DC B "C2'" 1
ATOM 152 C "C1'" . DC B 2 1 ? -14.423 -7.445 -10.691 1.00 88.76 ? 11 DC B "C1'" 1
ATOM 153 N N1 . DC B 2 1 ? -15.321 -6.317 -11.061 1.00 85.73 ? 11 DC B N1 1
ATOM 154 C C2 . DC B 2 1 ? -15.705 -5.393 -10.079 1.00 84.12 ? 11 DC B C2 1
ATOM 155 O O2 . DC B 2 1 ? -15.309 -5.521 -8.910 1.00 81.54 ? 11 DC B O2 1
ATOM 156 N N3 . DC B 2 1 ? -16.522 -4.382 -10.447 1.00 84.17 ? 11 DC B N3 1
ATOM 157 C C4 . DC B 2 1 ? -16.949 -4.297 -11.710 1.00 84.40 ? 11 DC B C4 1
ATOM 158 N N4 . DC B 2 1 ? -17.765 -3.286 -12.020 1.00 84.47 ? 11 DC B N4 1
ATOM 159 C C5 . DC B 2 1 ? -16.556 -5.224 -12.714 1.00 83.63 ? 11 DC B C5 1
ATOM 160 C C6 . DC B 2 1 ? -15.754 -6.217 -12.347 1.00 83.56 ? 11 DC B C6 1
ATOM 161 P P . DG B 2 2 ? -11.246 -9.938 -9.977 1.00 93.52 ? 12 DG B P 1
ATOM 162 O OP1 . DG B 2 2 ? -10.935 -11.366 -9.749 1.00 94.41 ? 12 DG B OP1 1
ATOM 163 O OP2 . DG B 2 2 ? -11.690 -9.167 -8.786 1.00 92.35 ? 12 DG B OP2 1
ATOM 164 O "O5'" . DG B 2 2 ? -10.046 -9.167 -10.728 1.00 91.00 ? 12 DG B "O5'" 1
ATOM 165 C "C5'" . DG B 2 2 ? -8.711 -9.135 -10.252 1.00 88.78 ? 12 DG B "C5'" 1
ATOM 166 C "C4'" . DG B 2 2 ? -8.461 -8.048 -9.217 1.00 86.22 ? 12 DG B "C4'" 1
ATOM 167 O "O4'" . DG B 2 2 ? -9.404 -6.940 -9.289 1.00 83.50 ? 12 DG B "O4'" 1
ATOM 168 C "C3'" . DG B 2 2 ? -8.485 -8.547 -7.775 1.00 84.87 ? 12 DG B "C3'" 1
ATOM 169 O "O3'" . DG B 2 2 ? -7.228 -8.206 -7.171 1.00 84.33 ? 12 DG B "O3'" 1
ATOM 170 C "C2'" . DG B 2 2 ? -9.661 -7.793 -7.163 1.00 83.27 ? 12 DG B "C2'" 1
ATOM 171 C "C1'" . DG B 2 2 ? -9.561 -6.492 -7.952 1.00 83.79 ? 12 DG B "C1'" 1
ATOM 172 N N9 . DG B 2 2 ? -10.735 -5.623 -7.888 1.00 83.00 ? 12 DG B N9 1
ATOM 173 C C8 . DG B 2 2 ? -12.036 -6.025 -7.733 1.00 83.45 ? 12 DG B C8 1
ATOM 174 N N7 . DG B 2 2 ? -12.893 -5.046 -7.738 1.00 83.36 ? 12 DG B N7 1
ATOM 175 C C5 . DG B 2 2 ? -12.114 -3.910 -7.918 1.00 82.18 ? 12 DG B C5 1
ATOM 176 C C6 . DG B 2 2 ? -12.502 -2.549 -8.014 1.00 80.92 ? 12 DG B C6 1
ATOM 177 O O6 . DG B 2 2 ? -13.642 -2.072 -7.944 1.00 79.64 ? 12 DG B O6 1
ATOM 178 N N1 . DG B 2 2 ? -11.405 -1.713 -8.195 1.00 81.03 ? 12 DG B N1 1
ATOM 179 C C2 . DG B 2 2 ? -10.096 -2.143 -8.277 1.00 81.84 ? 12 DG B C2 1
ATOM 180 N N2 . DG B 2 2 ? -9.155 -1.199 -8.457 1.00 81.60 ? 12 DG B N2 1
ATOM 181 N N3 . DG B 2 2 ? -9.726 -3.417 -8.185 1.00 82.25 ? 12 DG B N3 1
ATOM 182 C C4 . DG B 2 2 ? -10.782 -4.250 -8.010 1.00 82.36 ? 12 DG B C4 1
ATOM 183 P P . DC B 2 3 ? -6.939 -8.550 -5.624 1.00 83.83 ? 13 DC B P 1
ATOM 184 O OP1 . DC B 2 3 ? -5.641 -9.274 -5.531 1.00 81.67 ? 13 DC B OP1 1
ATOM 185 O OP2 . DC B 2 3 ? -8.163 -9.144 -5.032 1.00 84.17 ? 13 DC B OP2 1
ATOM 186 O "O5'" . DC B 2 3 ? -6.792 -7.096 -4.988 1.00 85.06 ? 13 DC B "O5'" 1
ATOM 187 C "C5'" . DC B 2 3 ? -5.590 -6.343 -5.237 1.00 85.93 ? 13 DC B "C5'" 1
ATOM 188 C "C4'" . DC B 2 3 ? -5.733 -4.925 -4.726 1.00 83.78 ? 13 DC B "C4'" 1
ATOM 189 O "O4'" . DC B 2 3 ? -7.031 -4.408 -5.131 1.00 82.07 ? 13 DC B "O4'" 1
ATOM 190 C "C3'" . DC B 2 3 ? -5.695 -4.834 -3.200 1.00 84.48 ? 13 DC B "C3'" 1
ATOM 191 O "O3'" . DC B 2 3 ? -4.845 -3.753 -2.807 1.00 86.48 ? 13 DC B "O3'" 1
ATOM 192 C "C2'" . DC B 2 3 ? -7.165 -4.628 -2.823 1.00 81.90 ? 13 DC B "C2'" 1
ATOM 193 C "C1'" . DC B 2 3 ? -7.577 -3.756 -4.003 1.00 78.99 ? 13 DC B "C1'" 1
ATOM 194 N N1 . DC B 2 3 ? -9.016 -3.497 -4.225 1.00 73.47 ? 13 DC B N1 1
ATOM 195 C C2 . DC B 2 3 ? -9.372 -2.292 -4.840 1.00 70.80 ? 13 DC B C2 1
ATOM 196 O O2 . DC B 2 3 ? -8.481 -1.504 -5.160 1.00 68.39 ? 13 DC B O2 1
ATOM 197 N N3 . DC B 2 3 ? -10.681 -2.018 -5.068 1.00 70.27 ? 13 DC B N3 1
ATOM 198 C C4 . DC B 2 3 ? -11.613 -2.906 -4.700 1.00 71.10 ? 13 DC B C4 1
ATOM 199 N N4 . DC B 2 3 ? -12.889 -2.608 -4.954 1.00 68.48 ? 13 DC B N4 1
ATOM 200 C C5 . DC B 2 3 ? -11.272 -4.151 -4.075 1.00 72.52 ? 13 DC B C5 1
ATOM 201 C C6 . DC B 2 3 ? -9.968 -4.404 -3.862 1.00 73.60 ? 13 DC B C6 1
ATOM 202 P P . DA B 2 4 ? -3.267 -3.861 -3.085 1.00 88.64 ? 14 DA B P 1
ATOM 203 O OP1 . DA B 2 4 ? -3.052 -3.909 -4.556 1.00 86.20 ? 14 DA B OP1 1
ATOM 204 O OP2 . DA B 2 4 ? -2.742 -4.955 -2.235 1.00 88.73 ? 14 DA B OP2 1
ATOM 205 O "O5'" . DA B 2 4 ? -2.700 -2.494 -2.465 1.00 86.10 ? 14 DA B "O5'" 1
ATOM 206 C "C5'" . DA B 2 4 ? -2.880 -1.242 -3.126 1.00 83.14 ? 14 DA B "C5'" 1
ATOM 207 C "C4'" . DA B 2 4 ? -3.434 -0.231 -2.144 1.00 80.11 ? 14 DA B "C4'" 1
ATOM 208 O "O4'" . DA B 2 4 ? -4.888 -0.316 -2.221 1.00 81.04 ? 14 DA B "O4'" 1
ATOM 209 C "C3'" . DA B 2 4 ? -3.041 -0.381 -0.658 1.00 79.77 ? 14 DA B "C3'" 1
ATOM 210 O "O3'" . DA B 2 4 ? -3.227 0.916 -0.114 1.00 77.56 ? 14 DA B "O3'" 1
ATOM 211 C "C2'" . DA B 2 4 ? -4.224 -1.196 -0.172 1.00 80.46 ? 14 DA B "C2'" 1
ATOM 212 C "C1'" . DA B 2 4 ? -5.346 -0.477 -0.893 1.00 80.95 ? 14 DA B "C1'" 1
ATOM 213 N N9 . DA B 2 4 ? -6.723 -0.975 -0.868 1.00 79.94 ? 14 DA B N9 1
ATOM 214 C C8 . DA B 2 4 ? -7.200 -2.211 -0.505 1.00 79.99 ? 14 DA B C8 1
ATOM 215 N N7 . DA B 2 4 ? -8.508 -2.324 -0.610 1.00 78.21 ? 14 DA B N7 1
ATOM 216 C C5 . DA B 2 4 ? -8.905 -1.076 -1.069 1.00 77.53 ? 14 DA B C5 1
ATOM 217 C C6 . DA B 2 4 ? -10.161 -0.539 -1.396 1.00 76.60 ? 14 DA B C6 1
ATOM 218 N N6 . DA B 2 4 ? -11.284 -1.252 -1.300 1.00 75.80 ? 14 DA B N6 1
ATOM 219 N N1 . DA B 2 4 ? -10.221 0.741 -1.837 1.00 75.54 ? 14 DA B N1 1
ATOM 220 C C2 . DA B 2 4 ? -9.085 1.438 -1.940 1.00 76.38 ? 14 DA B C2 1
ATOM 221 N N3 . DA B 2 4 ? -7.843 1.031 -1.666 1.00 77.31 ? 14 DA B N3 1
ATOM 222 C C4 . DA B 2 4 ? -7.822 -0.237 -1.229 1.00 77.91 ? 14 DA B C4 1
ATOM 223 P P . DC B 2 5 ? -2.385 1.499 1.132 1.00 76.41 ? 15 DC B P 1
ATOM 224 O OP1 . DC B 2 5 ? -0.942 1.306 0.842 1.00 77.06 ? 15 DC B OP1 1
ATOM 225 O OP2 . DC B 2 5 ? -2.949 1.016 2.418 1.00 73.07 ? 15 DC B OP2 1
ATOM 226 O "O5'" . DC B 2 5 ? -2.830 3.031 1.046 1.00 74.22 ? 15 DC B "O5'" 1
ATOM 227 C "C5'" . DC B 2 5 ? -3.987 3.283 0.208 1.00 70.70 ? 15 DC B "C5'" 1
ATOM 228 C "C4'" . DC B 2 5 ? -5.214 3.848 0.924 1.00 68.16 ? 15 DC B "C4'" 1
ATOM 229 O "O4'" . DC B 2 5 ? -6.356 2.946 0.860 1.00 66.31 ? 15 DC B "O4'" 1
ATOM 230 C "C3'" . DC B 2 5 ? -5.038 4.238 2.389 1.00 66.60 ? 15 DC B "C3'" 1
ATOM 231 O "O3'" . DC B 2 5 ? -4.834 5.684 2.418 1.00 65.86 ? 15 DC B "O3'" 1
ATOM 232 C "C2'" . DC B 2 5 ? -6.311 3.703 3.085 1.00 64.88 ? 15 DC B "C2'" 1
ATOM 233 C "C1'" . DC B 2 5 ? -7.216 3.161 1.972 1.00 65.50 ? 15 DC B "C1'" 1
ATOM 234 N N1 . DC B 2 5 ? -7.927 1.833 2.156 1.00 65.71 ? 15 DC B N1 1
ATOM 235 C C2 . DC B 2 5 ? -9.331 1.669 2.009 1.00 65.61 ? 15 DC B C2 1
ATOM 236 O O2 . DC B 2 5 ? -10.075 2.646 1.818 1.00 65.32 ? 15 DC B O2 1
ATOM 237 N N3 . DC B 2 5 ? -9.862 0.410 2.110 1.00 63.55 ? 15 DC B N3 1
ATOM 238 C C4 . DC B 2 5 ? -9.071 -0.647 2.337 1.00 61.99 ? 15 DC B C4 1
ATOM 239 N N4 . DC B 2 5 ? -9.620 -1.847 2.468 1.00 59.59 ? 15 DC B N4 1
ATOM 240 C C5 . DC B 2 5 ? -7.664 -0.516 2.468 1.00 63.53 ? 15 DC B C5 1
ATOM 241 C C6 . DC B 2 5 ? -7.149 0.716 2.343 1.00 66.29 ? 15 DC B C6 1
ATOM 242 P P . DG B 2 6 ? -4.567 6.463 3.808 1.00 69.20 ? 16 DG B P 1
ATOM 243 O OP1 . DG B 2 6 ? -3.768 7.688 3.538 1.00 67.67 ? 16 DG B OP1 1
ATOM 244 O OP2 . DG B 2 6 ? -4.089 5.484 4.820 1.00 70.29 ? 16 DG B OP2 1
ATOM 245 O "O5'" . DG B 2 6 ? -6.028 6.904 4.278 1.00 67.76 ? 16 DG B "O5'" 1
ATOM 246 C "C5'" . DG B 2 6 ? -7.069 7.272 3.368 1.00 63.50 ? 16 DG B "C5'" 1
ATOM 247 C "C4'" . DG B 2 6 ? -8.327 7.249 4.215 1.00 60.84 ? 16 DG B "C4'" 1
ATOM 248 O "O4'" . DG B 2 6 ? -8.820 5.890 4.232 1.00 56.38 ? 16 DG B "O4'" 1
ATOM 249 C "C3'" . DG B 2 6 ? -8.115 7.642 5.690 1.00 59.67 ? 16 DG B "C3'" 1
ATOM 250 O "O3'" . DG B 2 6 ? -9.165 8.576 6.148 1.00 61.04 ? 16 DG B "O3'" 1
ATOM 251 C "C2'" . DG B 2 6 ? -8.097 6.282 6.414 1.00 55.87 ? 16 DG B "C2'" 1
ATOM 252 C "C1'" . DG B 2 6 ? -9.108 5.518 5.573 1.00 55.18 ? 16 DG B "C1'" 1
ATOM 253 N N9 . DG B 2 6 ? -8.988 4.068 5.546 1.00 54.57 ? 16 DG B N9 1
ATOM 254 C C8 . DG B 2 6 ? -7.827 3.331 5.608 1.00 54.95 ? 16 DG B C8 1
ATOM 255 N N7 . DG B 2 6 ? -8.008 2.051 5.485 1.00 50.97 ? 16 DG B N7 1
ATOM 256 C C5 . DG B 2 6 ? -9.358 1.926 5.323 1.00 48.57 ? 16 DG B C5 1
ATOM 257 C C6 . DG B 2 6 ? -10.098 0.750 5.188 1.00 49.07 ? 16 DG B C6 1
ATOM 258 O O6 . DG B 2 6 ? -9.674 -0.426 5.147 1.00 48.61 ? 16 DG B O6 1
ATOM 259 N N1 . DG B 2 6 ? -11.467 1.022 5.060 1.00 46.72 ? 16 DG B N1 1
ATOM 260 C C2 . DG B 2 6 ? -12.003 2.298 5.080 1.00 45.59 ? 16 DG B C2 1
ATOM 261 N N2 . DG B 2 6 ? -13.324 2.401 4.961 1.00 47.17 ? 16 DG B N2 1
ATOM 262 N N3 . DG B 2 6 ? -11.307 3.400 5.229 1.00 44.19 ? 16 DG B N3 1
ATOM 263 C C4 . DG B 2 6 ? -9.993 3.144 5.344 1.00 50.16 ? 16 DG B C4 1
ATOM 264 P P . DC B 2 7 ? -9.294 8.959 7.721 1.00 63.39 ? 17 DC B P 1
ATOM 265 O OP1 . DC B 2 7 ? -9.265 10.443 7.831 1.00 63.03 ? 17 DC B OP1 1
ATOM 266 O OP2 . DC B 2 7 ? -8.263 8.199 8.497 1.00 61.68 ? 17 DC B OP2 1
ATOM 267 O "O5'" . DC B 2 7 ? -10.735 8.365 8.128 1.00 61.25 ? 17 DC B "O5'" 1
ATOM 268 C "C5'" . DC B 2 7 ? -11.953 8.900 7.601 1.00 62.78 ? 17 DC B "C5'" 1
ATOM 269 C "C4'" . DC B 2 7 ? -13.077 8.027 8.125 1.00 64.35 ? 17 DC B "C4'" 1
ATOM 270 O "O4'" . DC B 2 7 ? -12.676 6.667 7.845 1.00 63.14 ? 17 DC B "O4'" 1
ATOM 271 C "C3'" . DC B 2 7 ? -13.322 8.078 9.642 1.00 66.55 ? 17 DC B "C3'" 1
ATOM 272 O "O3'" . DC B 2 7 ? -14.743 8.258 9.974 1.00 67.40 ? 17 DC B "O3'" 1
ATOM 273 C "C2'" . DC B 2 7 ? -12.733 6.758 10.167 1.00 64.62 ? 17 DC B "C2'" 1
ATOM 274 C "C1'" . DC B 2 7 ? -12.921 5.843 8.957 1.00 63.39 ? 17 DC B "C1'" 1
ATOM 275 N N1 . DC B 2 7 ? -11.960 4.709 8.835 1.00 62.31 ? 17 DC B N1 1
ATOM 276 C C2 . DC B 2 7 ? -12.386 3.485 8.332 1.00 59.95 ? 17 DC B C2 1
ATOM 277 O O2 . DC B 2 7 ? -13.554 3.346 8.003 1.00 59.58 ? 17 DC B O2 1
ATOM 278 N N3 . DC B 2 7 ? -11.504 2.480 8.221 1.00 59.22 ? 17 DC B N3 1
ATOM 279 C C4 . DC B 2 7 ? -10.240 2.657 8.582 1.00 61.77 ? 17 DC B C4 1
ATOM 280 N N4 . DC B 2 7 ? -9.404 1.627 8.444 1.00 63.19 ? 17 DC B N4 1
ATOM 281 C C5 . DC B 2 7 ? -9.757 3.899 9.081 1.00 62.32 ? 17 DC B C5 1
ATOM 282 C C6 . DC B 2 7 ? -10.650 4.887 9.179 1.00 64.04 ? 17 DC B C6 1
HETATM 283 CO CO . NCO C 3 . ? -9.654 6.723 -1.499 0.50 48.20 ? 8 NCO A CO 1
HETATM 284 N N1 . NCO C 3 . ? -11.259 7.121 -0.409 0.50 44.66 ? 8 NCO A N1 1
HETATM 285 N N2 . NCO C 3 . ? -8.754 6.119 0.173 0.50 44.33 ? 8 NCO A N2 1
HETATM 286 N N3 . NCO C 3 . ? -8.042 6.326 -2.586 0.50 43.22 ? 8 NCO A N3 1
HETATM 287 N N4 . NCO C 3 . ? -10.536 7.283 -3.182 0.50 43.30 ? 8 NCO A N4 1
HETATM 288 N N5 . NCO C 3 . ? -9.000 8.563 -1.160 0.50 43.56 ? 8 NCO A N5 1
HETATM 289 N N6 . NCO C 3 . ? -10.338 4.886 -1.836 0.50 44.35 ? 8 NCO A N6 1
HETATM 290 O O . HOH D 4 . ? -7.185 4.635 -8.690 1.00 56.94 ? 9 HOH A O 1
HETATM 291 O O . HOH D 4 . ? -13.660 9.944 -1.303 1.00 38.46 ? 10 HOH A O 1
HETATM 292 O O . HOH D 4 . ? -9.483 8.058 -13.002 1.00 30.81 ? 11 HOH A O 1
HETATM 293 O O . HOH E 4 . ? -3.060 1.227 5.123 1.00 39.96 ? 1 HOH B O 1
HETATM 294 O O . HOH E 4 . ? -13.170 -11.933 -13.148 1.00 54.19 ? 2 HOH B O 1
HETATM 295 O O . HOH E 4 . ? -5.169 -5.171 0.000 0.50 55.72 ? 4 HOH B O 1
HETATM 296 O O . HOH E 4 . ? -8.627 -5.422 -0.611 1.00 44.04 ? 6 HOH B O 1
HETATM 297 O O . HOH E 4 . ? -1.650 6.816 5.052 1.00 73.10 ? 7 HOH B O 1
HETATM 298 O O . HOH E 4 . ? -13.219 -10.217 -6.094 1.00 47.70 ? 8 HOH B O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DC 2 2 2 DC DC A . n
A 1 3 DG 3 3 3 DG DG A . n
A 1 4 XTR 4 4 4 XTR XTR A . n
A 1 5 DG 5 5 5 DG DG A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DG 7 7 7 DG DG A . n
B 2 1 DC 1 11 11 DC DC B . n
B 2 2 DG 2 12 12 DG DG B . n
B 2 3 DC 3 13 13 DC DC B . n
B 2 4 DA 4 14 14 DA DA B . n
B 2 5 DC 5 15 15 DC DC B . n
B 2 6 DG 6 16 16 DG DG B . n
B 2 7 DC 7 17 17 DC DC B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NCO 1 8 1 NCO NCO A .
D 4 HOH 1 9 9 HOH HOH A .
D 4 HOH 2 10 3 HOH HOH A .
D 4 HOH 3 11 5 HOH HOH A .
E 4 HOH 1 1 1 HOH HOH B .
E 4 HOH 2 2 2 HOH HOH B .
E 4 HOH 3 4 4 HOH HOH B .
E 4 HOH 4 6 6 HOH HOH B .
E 4 HOH 5 7 7 HOH HOH B .
E 4 HOH 6 8 8 HOH HOH B .
#
_pdbx_struct_mod_residue.id 1
_pdbx_struct_mod_residue.label_asym_id A
_pdbx_struct_mod_residue.label_comp_id XTR
_pdbx_struct_mod_residue.label_seq_id 4
_pdbx_struct_mod_residue.auth_asym_id A
_pdbx_struct_mod_residue.auth_comp_id XTR
_pdbx_struct_mod_residue.auth_seq_id 4
_pdbx_struct_mod_residue.PDB_ins_code ?
_pdbx_struct_mod_residue.parent_comp_id DT
_pdbx_struct_mod_residue.details ?
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 640 ?
1 MORE -3 ?
1 'SSA (A^2)' 3020 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id B
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 4
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id E
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2010-08-18
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2023-09-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' diffrn_source
5 3 'Structure model' pdbx_initial_refinement_model
6 3 'Structure model' struct_conn
7 3 'Structure model' struct_site
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
5 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MAR345dtb 'data collection' . ? 1
PHASER phasing . ? 2
REFMAC refinement 5.5.0072 ? 3
MOSFLM 'data reduction' . ? 4
SCALA 'data scaling' . ? 5
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DC
_pdbx_validate_rmsd_bond.auth_seq_id_1 6
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DC
_pdbx_validate_rmsd_bond.auth_seq_id_2 6
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.382
_pdbx_validate_rmsd_bond.bond_target_value 1.419
_pdbx_validate_rmsd_bond.bond_deviation -0.037
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.006
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.64 108.30 3.34 0.30 N
2 1 "C1'" A DG 5 ? ? "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? 103.90 110.10 -6.20 1.00 N
3 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.67 108.30 2.37 0.30 N
4 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 111.06 108.30 2.76 0.30 N
5 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 104.15 109.40 -5.25 0.80 N
6 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 103.10 108.00 -4.90 0.70 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
HOH O O N N 108
HOH H1 H N N 109
HOH H2 H N N 110
NCO CO CO N N 111
NCO N1 N N N 112
NCO N2 N N N 113
NCO N3 N N N 114
NCO N4 N N N 115
NCO N5 N N N 116
NCO N6 N N N 117
NCO HN11 H N N 118
NCO HN12 H N N 119
NCO HN13 H N N 120
NCO HN21 H N N 121
NCO HN22 H N N 122
NCO HN23 H N N 123
NCO HN31 H N N 124
NCO HN32 H N N 125
NCO HN33 H N N 126
NCO HN41 H N N 127
NCO HN42 H N N 128
NCO HN43 H N N 129
NCO HN51 H N N 130
NCO HN52 H N N 131
NCO HN53 H N N 132
NCO HN61 H N N 133
NCO HN62 H N N 134
NCO HN63 H N N 135
XTR OP3 O N N 136
XTR "C4'" C N R 137
XTR "C7'" C N N 138
XTR "C6'" C N N 139
XTR "C1'" C N S 140
XTR O4 O N N 141
XTR C4 C N N 142
XTR C5 C N N 143
XTR C5M C N N 144
XTR C6 C N N 145
XTR N3 N N N 146
XTR C2 C N N 147
XTR O2 O N N 148
XTR N1 N N N 149
XTR "C2'" C N N 150
XTR "C3'" C N S 151
XTR P P N N 152
XTR OP1 O N N 153
XTR OP2 O N N 154
XTR "O5'" O N N 155
XTR "C5'" C N N 156
XTR "O3'" O N N 157
XTR HOP3 H N N 158
XTR "H4'" H N N 159
XTR "H7'" H N N 160
XTR "H6'" H N N 161
XTR "H1'" H N N 162
XTR H5M H N N 163
XTR H5MA H N N 164
XTR H5MB H N N 165
XTR H6 H N N 166
XTR HN3 H N N 167
XTR "H2'" H N N 168
XTR "H2'A" H N N 169
XTR "H3'" H N N 170
XTR "H5'" H N N 171
XTR "H5'A" H N N 172
XTR "HO3'" H N N 173
XTR HOP2 H N N 174
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
HOH O H1 sing N N 113
HOH O H2 sing N N 114
NCO CO N1 sing N N 115
NCO CO N2 sing N N 116
NCO CO N3 sing N N 117
NCO CO N4 sing N N 118
NCO CO N5 sing N N 119
NCO CO N6 sing N N 120
NCO N1 HN11 sing N N 121
NCO N1 HN12 sing N N 122
NCO N1 HN13 sing N N 123
NCO N2 HN21 sing N N 124
NCO N2 HN22 sing N N 125
NCO N2 HN23 sing N N 126
NCO N3 HN31 sing N N 127
NCO N3 HN32 sing N N 128
NCO N3 HN33 sing N N 129
NCO N4 HN41 sing N N 130
NCO N4 HN42 sing N N 131
NCO N4 HN43 sing N N 132
NCO N5 HN51 sing N N 133
NCO N5 HN52 sing N N 134
NCO N5 HN53 sing N N 135
NCO N6 HN61 sing N N 136
NCO N6 HN62 sing N N 137
NCO N6 HN63 sing N N 138
XTR OP3 HOP3 sing N N 139
XTR "C4'" "C6'" sing N N 140
XTR "C4'" "H4'" sing N N 141
XTR "C7'" "C6'" doub N N 142
XTR "C7'" "H7'" sing N N 143
XTR "C6'" "H6'" sing N N 144
XTR "C1'" "C7'" sing N N 145
XTR "C1'" N1 sing N N 146
XTR "C1'" "H1'" sing N N 147
XTR C4 O4 doub N N 148
XTR C5 C4 sing N N 149
XTR C5 C5M sing N N 150
XTR C5M H5M sing N N 151
XTR C5M H5MA sing N N 152
XTR C5M H5MB sing N N 153
XTR C6 C5 doub N N 154
XTR C6 H6 sing N N 155
XTR N3 C4 sing N N 156
XTR N3 HN3 sing N N 157
XTR C2 N3 sing N N 158
XTR O2 C2 doub N N 159
XTR N1 C6 sing N N 160
XTR N1 C2 sing N N 161
XTR "C2'" "C1'" sing N N 162
XTR "C2'" "C3'" sing N N 163
XTR "C2'" "H2'" sing N N 164
XTR "C2'" "H2'A" sing N N 165
XTR "C3'" "C4'" sing N N 166
XTR "C3'" "H3'" sing N N 167
XTR P OP3 sing N N 168
XTR P OP1 doub N N 169
XTR OP2 P sing N N 170
XTR "O5'" P sing N N 171
XTR "C5'" "C4'" sing N N 172
XTR "C5'" "O5'" sing N N 173
XTR "C5'" "H5'" sing N N 174
XTR "C5'" "H5'A" sing N N 175
XTR "O3'" "C3'" sing N N 176
XTR "O3'" "HO3'" sing N N 177
XTR OP2 HOP2 sing N N 178
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3LLN 'double helix'
3LLN 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 B DC 7 1_555 -0.617 -0.381 -0.833 -17.066 -3.615 -1.442 1 A_DG1:DC17_B A 1 ? B 17 ? 19 1
1 A DC 2 1_555 B DG 6 1_555 0.681 -0.335 -0.291 -0.632 -0.609 -3.223 2 A_DC2:DG16_B A 2 ? B 16 ? 19 1
1 A DG 3 1_555 B DC 5 1_555 -0.405 -0.248 0.621 5.743 -12.625 -3.571 3 A_DG3:DC15_B A 3 ? B 15 ? 19 1
1 A XTR 4 1_555 B DA 4 1_555 0.197 -0.218 0.720 -20.529 -26.820 -18.722 4 A_XTR4:DA14_B A 4 ? B 14 ? 20 1
1 A DG 5 1_555 B DC 3 1_555 0.613 -0.061 -0.621 -11.921 -17.781 -1.617 5 A_DG5:DC13_B A 5 ? B 13 ? 19 1
1 A DC 6 1_555 B DG 2 1_555 0.465 -0.097 0.524 4.282 -4.582 1.866 6 A_DC6:DG12_B A 6 ? B 12 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 B DC 7 1_555 A DC 2 1_555 B DG 6 1_555 0.715 0.482 2.745 -6.372 -0.443 33.881 0.870 -2.018 2.566 -0.752
10.814 34.460 1 AA_DG1DC2:DG16DC17_BB A 1 ? B 17 ? A 2 ? B 16 ?
1 A DC 2 1_555 B DG 6 1_555 A DG 3 1_555 B DC 5 1_555 -0.277 1.187 3.330 -0.959 4.331 27.346 1.381 0.336 3.480 9.086 2.012
27.697 2 AA_DC2DG3:DC15DG16_BB A 2 ? B 16 ? A 3 ? B 15 ?
1 A DG 3 1_555 B DC 5 1_555 A XTR 4 1_555 B DA 4 1_555 -0.791 -0.545 3.962 -3.667 2.009 42.688 -0.989 0.638 3.985 2.752 5.023
42.882 3 AA_DG3XTR4:DA14DC15_BB A 3 ? B 15 ? A 4 ? B 14 ?
1 A XTR 4 1_555 B DA 4 1_555 A DG 5 1_555 B DC 3 1_555 1.275 1.076 3.419 14.984 5.674 36.986 0.826 0.099 3.761 8.473
-22.376 40.196 4 AA_XTR4DG5:DC13DA14_BB A 4 ? B 14 ? A 5 ? B 13 ?
1 A DG 5 1_555 B DC 3 1_555 A DC 6 1_555 B DG 2 1_555 0.311 -0.201 2.819 -11.663 10.125 24.620 -2.265 -2.768 2.208 21.278
24.511 29.000 5 AA_DG5DC6:DG12DC13_BB A 5 ? B 13 ? A 6 ? B 12 ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'COBALT HEXAMMINE(III)' NCO
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3FL6
_pdbx_initial_refinement_model.details 'PDB entry 3FL6 (one biological unit)'
#