data_3IJN
#
_entry.id 3IJN
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.378
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3IJN pdb_00003ijn 10.2210/pdb3ijn/pdb
NDB NA0116 ? ?
RCSB RCSB054494 ? ?
WWPDB D_1000054494 ? ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 3IJK
_pdbx_database_related.details .
_pdbx_database_related.content_type unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3IJN
_pdbx_database_status.recvd_initial_deposition_date 2009-08-04
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sheng, J.' 1
'Zhang, W.' 2
'Hassan, A.E.A.' 3
'Gan, J.' 4
'Huang, Z.' 5
#
_citation.id primary
_citation.title '5-SeMe-Cytidine modified DNA 8mer'
_citation.journal_abbrev 'TO BE PUBLISHED'
_citation.journal_volume ?
_citation.page_first ?
_citation.page_last ?
_citation.year ?
_citation.journal_id_ASTM ?
_citation.country ?
_citation.journal_id_ISSN ?
_citation.journal_id_CSD 0353
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Sheng, J.' 1 ?
primary 'Zhang, W.' 2 ?
primary 'Hassan, A.E.A.' 3 ?
primary 'Gan, J.' 4 ?
primary 'Huang, Z.' 5 ?
#
_cell.entry_id 3IJN
_cell.length_a 42.581
_cell.length_b 42.581
_cell.length_c 24.548
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3IJN
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*(UMS)P*GP*TP*AP*(5SE)P*AP*C)-3'" 2598.564 1 ? ? ? '5-SeMe-Cytidine-DNA octamer'
2 water nat water 18.015 34 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(DT)(DA)(5SE)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GUGTAUAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 UMS n
1 3 DG n
1 4 DT n
1 5 DA n
1 6 5SE n
1 7 DA n
1 8 DC n
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3IJN
_struct_ref.pdbx_db_accession 3IJN
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code GUGTAUAC
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3IJN
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3IJN
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
5SE 'DNA linking' n
;2'-deoxy-5-(methylselanyl)cytidine 5'-(dihydrogen phosphate)
;
? 'C10 H16 N3 O7 P Se' 400.184
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168
#
_exptl.entry_id 3IJN
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.13
_exptl_crystal.density_percent_sol 42.33
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 7.0
_exptl_crystal_grow.pdbx_details
;10% v / v MPD, 40 mM Na Cacodylate pH 7.0, 12 mM Spermine tetra-HCl, 40 mM Lithium Chloride, 80 mM Strontium Chloride /
20 mM Magnesium Chloride, VAPOR DIFFUSION, HANGING DROP, temperature 293K
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 99
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.pdbx_collection_date 2009-07-15
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'horizontally focusing monochromator'
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.9795
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'NSLS BEAMLINE X29A'
_diffrn_source.pdbx_synchrotron_site NSLS
_diffrn_source.pdbx_synchrotron_beamline X29A
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 0.9795
#
_reflns.entry_id 3IJN
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 30
_reflns.d_resolution_high 1.80
_reflns.number_obs 2282
_reflns.number_all 2333
_reflns.percent_possible_obs 97.8
_reflns.pdbx_Rmerge_I_obs 0.07
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 38.16
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 15.6
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.86
_reflns_shell.percent_possible_all 85.0
_reflns_shell.Rmerge_I_obs 0.445
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 2.89
_reflns_shell.pdbx_redundancy 4.6
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 187
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 3IJN
_refine.ls_number_reflns_obs 2159
_refine.ls_number_reflns_all 2211
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 30
_refine.ls_d_res_high 1.80
_refine.ls_percent_reflns_obs 97.67
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_all 0.20729
_refine.ls_R_factor_R_work 0.20588
_refine.ls_R_factor_R_free 0.23421
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.6
_refine.ls_number_reflns_R_free 104
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc 0.962
_refine.correlation_coeff_Fo_to_Fc_free 0.951
_refine.B_iso_mean 12.118
_refine.aniso_B[1][1] 0.76
_refine.aniso_B[2][2] 0.76
_refine.aniso_B[3][3] -1.51
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model 1DNS
_refine.pdbx_method_to_determine_struct SAD
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.144
_refine.pdbx_overall_ESU_R_Free 0.131
_refine.overall_SU_ML 0.128
_refine.overall_SU_B 9.334
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL'
_refine.pdbx_diffrn_id 1
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 3IJN
_refine_analyze.Luzzati_coordinate_error_obs 0.144
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free 0.131
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 164
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 34
_refine_hist.number_atoms_total 198
_refine_hist.d_res_high 1.80
_refine_hist.d_res_low 30
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.009 0.021 ? 181 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 2.042 3.000 ? 272 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.067 0.200 ? 29 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.007 0.020 ? 92 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.342 0.200 ? 61 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.279 0.200 ? 97 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.150 0.200 ? 23 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.192 0.200 ? 20 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.135 0.200 ? 11 'X-RAY DIFFRACTION' ?
r_scbond_it 0.646 3.000 ? 264 'X-RAY DIFFRACTION' ?
r_scangle_it 0.814 4.500 ? 272 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.801
_refine_ls_shell.d_res_low 1.847
_refine_ls_shell.number_reflns_R_work 134
_refine_ls_shell.R_factor_R_work 0.352
_refine_ls_shell.percent_reflns_obs 81.71
_refine_ls_shell.R_factor_R_free 0.360
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 9
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_struct.entry_id 3IJN
_struct.title '5-SeMe-Cytidine modified DNA 8mer'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3IJN
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'Selenium, DNA, 5-SeMe-cytidine'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.603 ? ?
covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.601 ? ?
covale3 covale both ? A DA 5 "O3'" ? ? ? 1_555 A 5SE 6 P ? ? A DA 5 A 5SE 6 1_555 ? ? ? ? ? ? ? 1.637 ? ?
covale4 covale one ? A 5SE 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A 5SE 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.597 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_database_PDB_matrix.entry_id 3IJN
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 3IJN
_atom_sites.fract_transf_matrix[1][1] 0.023485
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023485
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.040737
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
SE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 7.754 44.801 11.725 1.00 6.43 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 7.629 46.197 11.469 1.00 6.35 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 8.793 46.738 10.649 1.00 6.85 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 10.019 46.600 11.412 1.00 7.12 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 9.100 46.043 9.327 1.00 6.84 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 8.292 46.546 8.268 1.00 6.71 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 10.570 46.408 9.141 1.00 6.63 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 11.097 46.270 10.563 1.00 6.53 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 11.548 44.921 10.895 1.00 6.85 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 10.833 43.954 11.566 1.00 6.83 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 11.480 42.834 11.716 1.00 6.81 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 12.702 43.071 11.104 1.00 6.37 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 13.818 42.217 10.961 1.00 6.24 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 13.936 41.055 11.360 1.00 6.70 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 14.872 42.831 10.285 1.00 6.70 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 14.835 44.118 9.806 1.00 6.58 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 15.941 44.527 9.180 1.00 6.85 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 13.793 44.939 9.929 1.00 6.46 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 12.762 44.350 10.588 1.00 6.34 ? 1 DG A C4 1
HETATM 20 P P . UMS A 1 2 ? 7.867 45.620 7.031 1.00 6.73 ? 2 UMS A P 1
HETATM 21 O OP1 . UMS A 1 2 ? 6.960 46.398 6.159 1.00 5.92 ? 2 UMS A OP1 1
HETATM 22 O OP2 . UMS A 1 2 ? 7.405 44.328 7.571 1.00 6.41 ? 2 UMS A OP2 1
HETATM 23 O "O5'" . UMS A 1 2 ? 9.262 45.365 6.286 1.00 6.34 ? 2 UMS A "O5'" 1
HETATM 24 C "C5'" . UMS A 1 2 ? 9.874 46.361 5.467 1.00 6.12 ? 2 UMS A "C5'" 1
HETATM 25 C "C4'" . UMS A 1 2 ? 11.238 45.910 4.982 1.00 6.72 ? 2 UMS A "C4'" 1
HETATM 26 O "O4'" . UMS A 1 2 ? 12.063 45.587 6.125 1.00 7.31 ? 2 UMS A "O4'" 1
HETATM 27 C "C3'" . UMS A 1 2 ? 11.278 44.624 4.165 1.00 7.70 ? 2 UMS A "C3'" 1
HETATM 28 O "O3'" . UMS A 1 2 ? 10.872 44.836 2.805 1.00 8.73 ? 2 UMS A "O3'" 1
HETATM 29 C "C2'" . UMS A 1 2 ? 12.746 44.208 4.319 1.00 7.29 ? 2 UMS A "C2'" 1
HETATM 30 SE "SE2'" . UMS A 1 2 ? 13.960 45.301 3.207 0.70 9.24 ? 2 UMS A "SE2'" 1
HETATM 31 C "C1'" . UMS A 1 2 ? 12.944 44.519 5.805 1.00 7.21 ? 2 UMS A "C1'" 1
HETATM 32 C "CA'" . UMS A 1 2 ? 15.786 44.645 3.482 0.70 7.01 ? 2 UMS A "CA'" 1
HETATM 33 N N1 . UMS A 1 2 ? 12.677 43.311 6.667 1.00 6.87 ? 2 UMS A N1 1
HETATM 34 C C2 . UMS A 1 2 ? 13.643 42.323 6.751 1.00 6.20 ? 2 UMS A C2 1
HETATM 35 O O2 . UMS A 1 2 ? 14.710 42.374 6.177 1.00 6.87 ? 2 UMS A O2 1
HETATM 36 N N3 . UMS A 1 2 ? 13.321 41.253 7.545 1.00 5.45 ? 2 UMS A N3 1
HETATM 37 C C4 . UMS A 1 2 ? 12.149 41.068 8.253 1.00 6.31 ? 2 UMS A C4 1
HETATM 38 O O4 . UMS A 1 2 ? 12.006 40.050 8.921 1.00 6.76 ? 2 UMS A O4 1
HETATM 39 C C5 . UMS A 1 2 ? 11.179 42.131 8.125 1.00 6.46 ? 2 UMS A C5 1
HETATM 40 C C6 . UMS A 1 2 ? 11.475 43.185 7.353 1.00 6.75 ? 2 UMS A C6 1
ATOM 41 P P . DG A 1 3 ? 10.001 43.752 2.012 1.00 8.67 ? 3 DG A P 1
ATOM 42 O OP1 . DG A 1 3 ? 9.613 44.425 0.762 1.00 8.68 ? 3 DG A OP1 1
ATOM 43 O OP2 . DG A 1 3 ? 8.986 43.181 2.928 1.00 9.19 ? 3 DG A OP2 1
ATOM 44 O "O5'" . DG A 1 3 ? 10.984 42.529 1.720 1.00 7.93 ? 3 DG A "O5'" 1
ATOM 45 C "C5'" . DG A 1 3 ? 12.122 42.676 0.899 1.00 7.39 ? 3 DG A "C5'" 1
ATOM 46 C "C4'" . DG A 1 3 ? 13.150 41.596 1.210 1.00 6.87 ? 3 DG A "C4'" 1
ATOM 47 O "O4'" . DG A 1 3 ? 13.468 41.594 2.623 1.00 5.78 ? 3 DG A "O4'" 1
ATOM 48 C "C3'" . DG A 1 3 ? 12.774 40.144 0.931 1.00 6.18 ? 3 DG A "C3'" 1
ATOM 49 O "O3'" . DG A 1 3 ? 12.833 39.851 -0.469 1.00 6.07 ? 3 DG A "O3'" 1
ATOM 50 C "C2'" . DG A 1 3 ? 13.928 39.489 1.677 1.00 5.69 ? 3 DG A "C2'" 1
ATOM 51 C "C1'" . DG A 1 3 ? 14.034 40.345 2.927 1.00 5.46 ? 3 DG A "C1'" 1
ATOM 52 N N9 . DG A 1 3 ? 13.282 39.748 4.019 1.00 5.62 ? 3 DG A N9 1
ATOM 53 C C8 . DG A 1 3 ? 12.056 40.123 4.521 1.00 5.34 ? 3 DG A C8 1
ATOM 54 N N7 . DG A 1 3 ? 11.648 39.366 5.503 1.00 5.20 ? 3 DG A N7 1
ATOM 55 C C5 . DG A 1 3 ? 12.676 38.432 5.659 1.00 5.84 ? 3 DG A C5 1
ATOM 56 C C6 . DG A 1 3 ? 12.825 37.347 6.564 1.00 5.22 ? 3 DG A C6 1
ATOM 57 O O6 . DG A 1 3 ? 12.042 36.992 7.454 1.00 5.95 ? 3 DG A O6 1
ATOM 58 N N1 . DG A 1 3 ? 14.014 36.642 6.366 1.00 4.87 ? 3 DG A N1 1
ATOM 59 C C2 . DG A 1 3 ? 14.961 36.944 5.416 1.00 4.82 ? 3 DG A C2 1
ATOM 60 N N2 . DG A 1 3 ? 16.055 36.174 5.369 1.00 5.28 ? 3 DG A N2 1
ATOM 61 N N3 . DG A 1 3 ? 14.844 37.955 4.568 1.00 5.42 ? 3 DG A N3 1
ATOM 62 C C4 . DG A 1 3 ? 13.684 38.650 4.742 1.00 5.83 ? 3 DG A C4 1
ATOM 63 P P . DT A 1 4 ? 12.246 38.512 -1.133 1.00 6.47 ? 4 DT A P 1
ATOM 64 O OP1 . DT A 1 4 ? 12.338 38.640 -2.604 1.00 6.14 ? 4 DT A OP1 1
ATOM 65 O OP2 . DT A 1 4 ? 10.927 38.265 -0.524 1.00 6.69 ? 4 DT A OP2 1
ATOM 66 O "O5'" . DT A 1 4 ? 13.218 37.351 -0.611 1.00 7.07 ? 4 DT A "O5'" 1
ATOM 67 C "C5'" . DT A 1 4 ? 14.610 37.275 -0.918 1.00 6.72 ? 4 DT A "C5'" 1
ATOM 68 C "C4'" . DT A 1 4 ? 15.232 36.026 -0.305 1.00 6.64 ? 4 DT A "C4'" 1
ATOM 69 O "O4'" . DT A 1 4 ? 15.275 36.157 1.137 1.00 6.50 ? 4 DT A "O4'" 1
ATOM 70 C "C3'" . DT A 1 4 ? 14.481 34.716 -0.517 1.00 6.62 ? 4 DT A "C3'" 1
ATOM 71 O "O3'" . DT A 1 4 ? 14.766 34.153 -1.782 1.00 7.50 ? 4 DT A "O3'" 1
ATOM 72 C "C2'" . DT A 1 4 ? 15.037 33.857 0.611 1.00 5.84 ? 4 DT A "C2'" 1
ATOM 73 C "C1'" . DT A 1 4 ? 15.116 34.875 1.735 1.00 5.73 ? 4 DT A "C1'" 1
ATOM 74 N N1 . DT A 1 4 ? 13.907 34.877 2.623 1.00 6.26 ? 4 DT A N1 1
ATOM 75 C C2 . DT A 1 4 ? 13.800 33.951 3.645 1.00 5.33 ? 4 DT A C2 1
ATOM 76 O O2 . DT A 1 4 ? 14.634 33.102 3.882 1.00 5.72 ? 4 DT A O2 1
ATOM 77 N N3 . DT A 1 4 ? 12.662 34.053 4.399 1.00 4.70 ? 4 DT A N3 1
ATOM 78 C C4 . DT A 1 4 ? 11.635 34.960 4.232 1.00 5.19 ? 4 DT A C4 1
ATOM 79 O O4 . DT A 1 4 ? 10.667 34.944 4.976 1.00 5.54 ? 4 DT A O4 1
ATOM 80 C C5 . DT A 1 4 ? 11.790 35.900 3.138 1.00 5.70 ? 4 DT A C5 1
ATOM 81 C C7 . DT A 1 4 ? 10.766 36.951 2.830 1.00 4.91 ? 4 DT A C7 1
ATOM 82 C C6 . DT A 1 4 ? 12.905 35.812 2.404 1.00 6.43 ? 4 DT A C6 1
ATOM 83 P P . DA A 1 5 ? 13.858 32.995 -2.418 1.00 7.49 ? 5 DA A P 1
ATOM 84 O OP1 . DA A 1 5 ? 14.216 32.947 -3.853 1.00 8.70 ? 5 DA A OP1 1
ATOM 85 O OP2 . DA A 1 5 ? 12.448 33.121 -1.966 1.00 7.75 ? 5 DA A OP2 1
ATOM 86 O "O5'" . DA A 1 5 ? 14.443 31.673 -1.751 1.00 7.10 ? 5 DA A "O5'" 1
ATOM 87 C "C5'" . DA A 1 5 ? 13.594 30.611 -1.433 1.00 5.26 ? 5 DA A "C5'" 1
ATOM 88 C "C4'" . DA A 1 5 ? 14.209 29.834 -0.297 1.00 4.89 ? 5 DA A "C4'" 1
ATOM 89 O "O4'" . DA A 1 5 ? 14.291 30.652 0.890 1.00 5.08 ? 5 DA A "O4'" 1
ATOM 90 C "C3'" . DA A 1 5 ? 13.374 28.649 0.102 1.00 5.11 ? 5 DA A "C3'" 1
ATOM 91 O "O3'" . DA A 1 5 ? 13.635 27.535 -0.659 1.00 24.95 ? 5 DA A "O3'" 1
ATOM 92 C "C2'" . DA A 1 5 ? 13.631 28.489 1.587 1.00 4.50 ? 5 DA A "C2'" 1
ATOM 93 C "C1'" . DA A 1 5 ? 13.782 29.939 2.001 1.00 4.18 ? 5 DA A "C1'" 1
ATOM 94 N N9 . DA A 1 5 ? 12.563 30.609 2.442 1.00 4.28 ? 5 DA A N9 1
ATOM 95 C C8 . DA A 1 5 ? 11.964 31.674 1.833 1.00 3.70 ? 5 DA A C8 1
ATOM 96 N N7 . DA A 1 5 ? 10.897 32.102 2.454 1.00 4.35 ? 5 DA A N7 1
ATOM 97 C C5 . DA A 1 5 ? 10.790 31.272 3.557 1.00 4.41 ? 5 DA A C5 1
ATOM 98 C C6 . DA A 1 5 ? 9.859 31.208 4.617 1.00 4.12 ? 5 DA A C6 1
ATOM 99 N N6 . DA A 1 5 ? 8.821 32.037 4.738 1.00 3.75 ? 5 DA A N6 1
ATOM 100 N N1 . DA A 1 5 ? 10.041 30.252 5.557 1.00 3.87 ? 5 DA A N1 1
ATOM 101 C C2 . DA A 1 5 ? 11.079 29.410 5.440 1.00 3.60 ? 5 DA A C2 1
ATOM 102 N N3 . DA A 1 5 ? 12.021 29.379 4.492 1.00 4.45 ? 5 DA A N3 1
ATOM 103 C C4 . DA A 1 5 ? 11.816 30.342 3.571 1.00 4.47 ? 5 DA A C4 1
HETATM 104 P P . 5SE A 1 6 ? 12.611 26.315 -1.037 1.00 26.63 ? 6 5SE A P 1
HETATM 105 N N1 . 5SE A 1 6 ? 9.764 26.760 3.384 1.00 24.16 ? 6 5SE A N1 1
HETATM 106 C C2 . 5SE A 1 6 ? 8.708 27.066 4.229 1.00 25.26 ? 6 5SE A C2 1
HETATM 107 O O2 . 5SE A 1 6 ? 8.535 26.355 5.208 1.00 27.44 ? 6 5SE A O2 1
HETATM 108 N N3 . 5SE A 1 6 ? 7.880 28.103 3.983 1.00 23.81 ? 6 5SE A N3 1
HETATM 109 C C4 . 5SE A 1 6 ? 8.097 28.828 2.921 1.00 21.58 ? 6 5SE A C4 1
HETATM 110 N N4 . 5SE A 1 6 ? 7.259 29.832 2.723 1.00 21.26 ? 6 5SE A N4 1
HETATM 111 C C5 . 5SE A 1 6 ? 9.188 28.535 2.056 1.00 23.72 ? 6 5SE A C5 1
HETATM 112 C C6 . 5SE A 1 6 ? 10.000 27.508 2.299 1.00 23.78 ? 6 5SE A C6 1
HETATM 113 C "C1'" . 5SE A 1 6 ? 10.641 25.694 3.754 1.00 25.00 ? 6 5SE A "C1'" 1
HETATM 114 C "C2'" . 5SE A 1 6 ? 10.150 24.292 3.532 1.00 25.84 ? 6 5SE A "C2'" 1
HETATM 115 O OP2 . 5SE A 1 6 ? 11.496 26.977 -1.691 1.00 26.59 ? 6 5SE A OP2 1
HETATM 116 C "C3'" . 5SE A 1 6 ? 10.738 24.156 2.156 1.00 27.34 ? 6 5SE A "C3'" 1
HETATM 117 O "O3'" . 5SE A 1 6 ? 10.683 22.800 1.748 1.00 31.01 ? 6 5SE A "O3'" 1
HETATM 118 C "C4'" . 5SE A 1 6 ? 12.150 24.651 2.366 1.00 26.74 ? 6 5SE A "C4'" 1
HETATM 119 O "O4'" . 5SE A 1 6 ? 11.807 25.902 2.987 1.00 28.09 ? 6 5SE A "O4'" 1
HETATM 120 C "C5'" . 5SE A 1 6 ? 12.962 24.929 1.113 1.00 24.59 ? 6 5SE A "C5'" 1
HETATM 121 O "O5'" . 5SE A 1 6 ? 12.157 25.777 0.370 1.00 24.94 ? 6 5SE A "O5'" 1
HETATM 122 C CA5 . 5SE A 1 6 ? 8.095 29.110 -0.855 1.00 29.51 ? 6 5SE A CA5 1
HETATM 123 SE SE5 . 5SE A 1 6 ? 9.463 29.597 0.481 1.00 33.73 ? 6 5SE A SE5 1
HETATM 124 O OP1 . 5SE A 1 6 ? 13.343 25.208 -1.665 1.00 31.76 ? 6 5SE A OP1 1
ATOM 125 P P . DA A 1 7 ? 9.515 22.092 0.920 1.00 28.23 ? 7 DA A P 1
ATOM 126 O OP1 . DA A 1 7 ? 9.736 20.685 0.341 1.00 9.83 ? 7 DA A OP1 1
ATOM 127 O OP2 . DA A 1 7 ? 9.130 23.155 0.043 1.00 11.44 ? 7 DA A OP2 1
ATOM 128 O "O5'" . DA A 1 7 ? 8.395 21.974 2.070 1.00 9.28 ? 7 DA A "O5'" 1
ATOM 129 C "C5'" . DA A 1 7 ? 8.462 20.994 3.087 1.00 8.81 ? 7 DA A "C5'" 1
ATOM 130 C "C4'" . DA A 1 7 ? 7.275 21.131 4.015 1.00 7.62 ? 7 DA A "C4'" 1
ATOM 131 O "O4'" . DA A 1 7 ? 7.230 22.478 4.527 1.00 7.75 ? 7 DA A "O4'" 1
ATOM 132 C "C3'" . DA A 1 7 ? 5.923 20.962 3.363 1.00 7.48 ? 7 DA A "C3'" 1
ATOM 133 O "O3'" . DA A 1 7 ? 5.606 19.613 3.348 1.00 7.13 ? 7 DA A "O3'" 1
ATOM 134 C "C2'" . DA A 1 7 ? 5.001 21.711 4.313 1.00 7.52 ? 7 DA A "C2'" 1
ATOM 135 C "C1'" . DA A 1 7 ? 5.888 22.879 4.712 1.00 7.50 ? 7 DA A "C1'" 1
ATOM 136 N N9 . DA A 1 7 ? 5.699 24.127 3.974 1.00 7.67 ? 7 DA A N9 1
ATOM 137 C C8 . DA A 1 7 ? 6.434 24.575 2.908 1.00 7.12 ? 7 DA A C8 1
ATOM 138 N N7 . DA A 1 7 ? 6.057 25.744 2.463 1.00 6.73 ? 7 DA A N7 1
ATOM 139 C C5 . DA A 1 7 ? 5.003 26.096 3.297 1.00 7.57 ? 7 DA A C5 1
ATOM 140 C C6 . DA A 1 7 ? 4.157 27.233 3.370 1.00 7.76 ? 7 DA A C6 1
ATOM 141 N N6 . DA A 1 7 ? 4.247 28.273 2.540 1.00 7.67 ? 7 DA A N6 1
ATOM 142 N N1 . DA A 1 7 ? 3.195 27.267 4.330 1.00 7.67 ? 7 DA A N1 1
ATOM 143 C C2 . DA A 1 7 ? 3.086 26.228 5.169 1.00 7.14 ? 7 DA A C2 1
ATOM 144 N N3 . DA A 1 7 ? 3.826 25.115 5.198 1.00 7.86 ? 7 DA A N3 1
ATOM 145 C C4 . DA A 1 7 ? 4.772 25.109 4.238 1.00 7.26 ? 7 DA A C4 1
ATOM 146 P P . DC A 1 8 ? 4.684 19.045 2.193 1.00 7.24 ? 8 DC A P 1
ATOM 147 O OP1 . DC A 1 8 ? 4.687 17.574 2.325 1.00 7.43 ? 8 DC A OP1 1
ATOM 148 O OP2 . DC A 1 8 ? 5.074 19.720 0.939 1.00 7.48 ? 8 DC A OP2 1
ATOM 149 O "O5'" . DC A 1 8 ? 3.220 19.548 2.568 1.00 9.05 ? 8 DC A "O5'" 1
ATOM 150 C "C5'" . DC A 1 8 ? 2.554 19.020 3.710 1.00 9.67 ? 8 DC A "C5'" 1
ATOM 151 C "C4'" . DC A 1 8 ? 1.285 19.802 3.950 1.00 10.31 ? 8 DC A "C4'" 1
ATOM 152 O "O4'" . DC A 1 8 ? 1.653 21.189 4.102 1.00 11.03 ? 8 DC A "O4'" 1
ATOM 153 C "C3'" . DC A 1 8 ? 0.330 19.725 2.769 1.00 11.05 ? 8 DC A "C3'" 1
ATOM 154 O "O3'" . DC A 1 8 ? -0.729 18.827 3.081 1.00 11.89 ? 8 DC A "O3'" 1
ATOM 155 C "C2'" . DC A 1 8 ? -0.188 21.148 2.578 1.00 11.03 ? 8 DC A "C2'" 1
ATOM 156 C "C1'" . DC A 1 8 ? 0.715 22.014 3.447 1.00 10.15 ? 8 DC A "C1'" 1
ATOM 157 N N1 . DC A 1 8 ? 1.384 23.092 2.648 1.00 9.85 ? 8 DC A N1 1
ATOM 158 C C2 . DC A 1 8 ? 0.848 24.381 2.726 1.00 10.19 ? 8 DC A C2 1
ATOM 159 O O2 . DC A 1 8 ? -0.134 24.581 3.456 1.00 10.07 ? 8 DC A O2 1
ATOM 160 N N3 . DC A 1 8 ? 1.421 25.378 2.000 1.00 9.76 ? 8 DC A N3 1
ATOM 161 C C4 . DC A 1 8 ? 2.476 25.125 1.224 1.00 9.42 ? 8 DC A C4 1
ATOM 162 N N4 . DC A 1 8 ? 2.987 26.151 0.542 1.00 8.90 ? 8 DC A N4 1
ATOM 163 C C5 . DC A 1 8 ? 3.043 23.816 1.128 1.00 9.13 ? 8 DC A C5 1
ATOM 164 C C6 . DC A 1 8 ? 2.466 22.841 1.846 1.00 9.64 ? 8 DC A C6 1
HETATM 165 O O . HOH B 2 . ? -0.375 25.029 6.562 1.00 34.60 ? 9 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 8.065 41.895 5.860 1.00 31.23 ? 10 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 14.498 27.766 4.831 1.00 19.24 ? 11 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 5.837 25.999 -0.473 1.00 31.96 ? 12 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 15.590 25.473 3.813 1.00 27.19 ? 13 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 15.771 24.483 -1.175 1.00 30.87 ? 14 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 8.991 39.280 6.430 1.00 32.36 ? 15 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 14.370 23.074 4.220 1.00 35.68 ? 16 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 10.303 35.207 -0.382 1.00 39.03 ? 17 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 9.188 33.817 1.308 1.00 24.26 ? 18 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 9.967 37.822 9.033 1.00 22.56 ? 19 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 8.059 36.172 5.256 1.00 32.79 ? 20 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 10.104 40.758 12.838 1.00 31.45 ? 21 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 6.003 32.217 0.732 1.00 34.97 ? 22 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 8.833 25.387 -1.406 1.00 34.26 ? 23 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 13.220 25.109 -4.615 1.00 42.84 ? 24 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 9.448 47.819 1.049 1.00 41.29 ? 25 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 6.462 43.438 9.872 1.00 31.32 ? 26 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 16.896 38.517 2.915 1.00 33.26 ? 27 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 7.563 18.401 -0.554 1.00 45.06 ? 28 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 8.920 39.682 0.396 1.00 44.71 ? 29 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 2.563 22.909 6.556 1.00 25.61 ? 30 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 11.636 32.458 -5.583 1.00 39.36 ? 31 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 5.485 22.405 -1.115 1.00 41.80 ? 32 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 10.217 31.637 -2.269 1.00 34.47 ? 33 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 6.338 16.037 3.754 1.00 34.72 ? 34 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 16.543 25.957 1.206 1.00 23.06 ? 35 HOH A O 1
HETATM 192 O O . HOH B 2 . ? 15.978 43.594 -0.437 1.00 44.69 ? 36 HOH A O 1
HETATM 193 O O . HOH B 2 . ? 7.001 40.895 9.934 1.00 41.13 ? 37 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 4.676 44.108 4.695 1.00 45.76 ? 38 HOH A O 1
HETATM 195 O O . HOH B 2 . ? 6.132 44.735 2.942 1.00 42.99 ? 39 HOH A O 1
HETATM 196 O O . HOH B 2 . ? 10.491 43.591 -2.466 1.00 46.85 ? 40 HOH A O 1
HETATM 197 O O . HOH B 2 . ? 12.442 39.172 12.582 1.00 34.40 ? 41 HOH A O 1
HETATM 198 O O . HOH B 2 . ? 10.653 29.456 -3.071 1.00 30.21 ? 42 HOH A O 1
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 UMS 2 2 2 UMS UMS A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 DT 4 4 4 DT T A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 5SE 6 6 6 5SE 5SC A . n
A 1 7 DA 7 7 7 DA A A . n
A 1 8 DC 8 8 8 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 9 9 HOH HOH A .
B 2 HOH 2 10 10 HOH HOH A .
B 2 HOH 3 11 1 HOH HOH A .
B 2 HOH 4 12 12 HOH HOH A .
B 2 HOH 5 13 2 HOH HOH A .
B 2 HOH 6 14 14 HOH HOH A .
B 2 HOH 7 15 15 HOH HOH A .
B 2 HOH 8 16 16 HOH HOH A .
B 2 HOH 9 17 17 HOH HOH A .
B 2 HOH 10 18 18 HOH HOH A .
B 2 HOH 11 19 3 HOH HOH A .
B 2 HOH 12 20 20 HOH HOH A .
B 2 HOH 13 21 4 HOH HOH A .
B 2 HOH 14 22 22 HOH HOH A .
B 2 HOH 15 23 23 HOH HOH A .
B 2 HOH 16 24 24 HOH HOH A .
B 2 HOH 17 25 25 HOH HOH A .
B 2 HOH 18 26 26 HOH HOH A .
B 2 HOH 19 27 27 HOH HOH A .
B 2 HOH 20 28 28 HOH HOH A .
B 2 HOH 21 29 29 HOH HOH A .
B 2 HOH 22 30 5 HOH HOH A .
B 2 HOH 23 31 31 HOH HOH A .
B 2 HOH 24 32 32 HOH HOH A .
B 2 HOH 25 33 33 HOH HOH A .
B 2 HOH 26 34 34 HOH HOH A .
B 2 HOH 27 35 6 HOH HOH A .
B 2 HOH 28 36 36 HOH HOH A .
B 2 HOH 29 37 37 HOH HOH A .
B 2 HOH 30 38 38 HOH HOH A .
B 2 HOH 31 39 39 HOH HOH A .
B 2 HOH 32 40 40 HOH HOH A .
B 2 HOH 33 41 7 HOH HOH A .
B 2 HOH 34 42 8 HOH HOH A .
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A UMS 2 A UMS 2 ? DU ?
2 A 5SE 6 A 5SE 6 ? DU ?
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000
1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 42.5810000000 -1.0000000000
0.0000000000 0.0000000000 42.5810000000 0.0000000000 0.0000000000 -1.0000000000 12.2740000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2009-10-06
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2023-09-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' Advisory
2 2 'Structure model' 'Version format compliance'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Database references'
5 3 'Structure model' 'Derived calculations'
6 3 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' chem_comp_atom
2 3 'Structure model' chem_comp_bond
3 3 'Structure model' database_2
4 3 'Structure model' pdbx_initial_refinement_model
5 3 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_database_2.pdbx_DOI'
2 3 'Structure model' '_database_2.pdbx_database_accession'
3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
_pdbx_refine_tls.S[3][3]
'X-RAY DIFFRACTION' 1 ? refined 12.2728 40.9982 5.2746 0.2447 0.2449 0.2224 -0.0276 -0.0236 -0.0459 0.1734 6.1739 1.0527 -0.9801
-0.3874 1.8459 0.1210 0.3224 0.1581 -0.2993 -0.0007 -0.1882 -0.1642 -0.1250 -0.1203
'X-RAY DIFFRACTION' 2 ? refined 7.8407 25.7755 2.2939 0.1567 0.1581 0.1450 0.0112 -0.0466 -0.0105 5.1849 10.3167 7.4352 0.4017
-1.6536 -0.5501 -0.1334 -0.1405 -0.1907 -0.4170 -0.0214 -0.1579 0.4675 0.2088 0.1548
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
_pdbx_refine_tls_group.selection_details
'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 4 ? ? ? ?
'X-RAY DIFFRACTION' 2 2 A 5 ? ? A 8 ? ? ? ?
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
CBASS 'data collection' . ? 1
SHELXS phasing . ? 2
REFMAC refinement 5.0 ? 3
HKL-2000 'data reduction' . ? 4
HKL-2000 'data scaling' . ? 5
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 DA
_pdbx_validate_rmsd_bond.auth_seq_id_1 5
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 DA
_pdbx_validate_rmsd_bond.auth_seq_id_2 5
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.374
_pdbx_validate_rmsd_bond.bond_target_value 1.419
_pdbx_validate_rmsd_bond.bond_deviation -0.045
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.006
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? 97.65 102.20 -4.55 0.70 N
2 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A 5SE 6 ? ? 127.82 119.70 8.12 1.20 Y
3 1 "C3'" A 5SE 6 ? ? "O3'" A 5SE 6 ? ? P A DA 7 ? ? 127.00 119.70 7.30 1.20 Y
4 1 "O3'" A 5SE 6 ? ? P A DA 7 ? ? OP1 A DA 7 ? ? 119.72 110.50 9.22 1.10 Y
5 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.79 108.30 3.49 0.30 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
5SE P P N N 1
5SE N1 N N N 2
5SE C2 C N N 3
5SE O2 O N N 4
5SE N3 N N N 5
5SE C4 C N N 6
5SE N4 N N N 7
5SE C5 C N N 8
5SE C6 C N N 9
5SE "C1'" C N R 10
5SE OP3 O N N 11
5SE "C2'" C N N 12
5SE OP2 O N N 13
5SE "C3'" C N S 14
5SE "O3'" O N N 15
5SE "C4'" C N R 16
5SE "O4'" O N N 17
5SE "C5'" C N N 18
5SE "O5'" O N N 19
5SE CA5 C N N 20
5SE SE5 SE N N 21
5SE HN4 H N N 22
5SE HN4A H N N 23
5SE H6 H N N 24
5SE "H1'" H N N 25
5SE HOP3 H N N 26
5SE "H2'" H N N 27
5SE "H2'A" H N N 28
5SE HOP2 H N N 29
5SE "H3'" H N N 30
5SE "HO3'" H N N 31
5SE "H4'" H N N 32
5SE "H5'" H N N 33
5SE "H5'A" H N N 34
5SE HA5 H N N 35
5SE HA5A H N N 36
5SE HA5B H N N 37
5SE OP1 O N N 38
DA OP3 O N N 39
DA P P N N 40
DA OP1 O N N 41
DA OP2 O N N 42
DA "O5'" O N N 43
DA "C5'" C N N 44
DA "C4'" C N R 45
DA "O4'" O N N 46
DA "C3'" C N S 47
DA "O3'" O N N 48
DA "C2'" C N N 49
DA "C1'" C N R 50
DA N9 N Y N 51
DA C8 C Y N 52
DA N7 N Y N 53
DA C5 C Y N 54
DA C6 C Y N 55
DA N6 N N N 56
DA N1 N Y N 57
DA C2 C Y N 58
DA N3 N Y N 59
DA C4 C Y N 60
DA HOP3 H N N 61
DA HOP2 H N N 62
DA "H5'" H N N 63
DA "H5''" H N N 64
DA "H4'" H N N 65
DA "H3'" H N N 66
DA "HO3'" H N N 67
DA "H2'" H N N 68
DA "H2''" H N N 69
DA "H1'" H N N 70
DA H8 H N N 71
DA H61 H N N 72
DA H62 H N N 73
DA H2 H N N 74
DC OP3 O N N 75
DC P P N N 76
DC OP1 O N N 77
DC OP2 O N N 78
DC "O5'" O N N 79
DC "C5'" C N N 80
DC "C4'" C N R 81
DC "O4'" O N N 82
DC "C3'" C N S 83
DC "O3'" O N N 84
DC "C2'" C N N 85
DC "C1'" C N R 86
DC N1 N N N 87
DC C2 C N N 88
DC O2 O N N 89
DC N3 N N N 90
DC C4 C N N 91
DC N4 N N N 92
DC C5 C N N 93
DC C6 C N N 94
DC HOP3 H N N 95
DC HOP2 H N N 96
DC "H5'" H N N 97
DC "H5''" H N N 98
DC "H4'" H N N 99
DC "H3'" H N N 100
DC "HO3'" H N N 101
DC "H2'" H N N 102
DC "H2''" H N N 103
DC "H1'" H N N 104
DC H41 H N N 105
DC H42 H N N 106
DC H5 H N N 107
DC H6 H N N 108
DG OP3 O N N 109
DG P P N N 110
DG OP1 O N N 111
DG OP2 O N N 112
DG "O5'" O N N 113
DG "C5'" C N N 114
DG "C4'" C N R 115
DG "O4'" O N N 116
DG "C3'" C N S 117
DG "O3'" O N N 118
DG "C2'" C N N 119
DG "C1'" C N R 120
DG N9 N Y N 121
DG C8 C Y N 122
DG N7 N Y N 123
DG C5 C Y N 124
DG C6 C N N 125
DG O6 O N N 126
DG N1 N N N 127
DG C2 C N N 128
DG N2 N N N 129
DG N3 N N N 130
DG C4 C Y N 131
DG HOP3 H N N 132
DG HOP2 H N N 133
DG "H5'" H N N 134
DG "H5''" H N N 135
DG "H4'" H N N 136
DG "H3'" H N N 137
DG "HO3'" H N N 138
DG "H2'" H N N 139
DG "H2''" H N N 140
DG "H1'" H N N 141
DG H8 H N N 142
DG H1 H N N 143
DG H21 H N N 144
DG H22 H N N 145
DT OP3 O N N 146
DT P P N N 147
DT OP1 O N N 148
DT OP2 O N N 149
DT "O5'" O N N 150
DT "C5'" C N N 151
DT "C4'" C N R 152
DT "O4'" O N N 153
DT "C3'" C N S 154
DT "O3'" O N N 155
DT "C2'" C N N 156
DT "C1'" C N R 157
DT N1 N N N 158
DT C2 C N N 159
DT O2 O N N 160
DT N3 N N N 161
DT C4 C N N 162
DT O4 O N N 163
DT C5 C N N 164
DT C7 C N N 165
DT C6 C N N 166
DT HOP3 H N N 167
DT HOP2 H N N 168
DT "H5'" H N N 169
DT "H5''" H N N 170
DT "H4'" H N N 171
DT "H3'" H N N 172
DT "HO3'" H N N 173
DT "H2'" H N N 174
DT "H2''" H N N 175
DT "H1'" H N N 176
DT H3 H N N 177
DT H71 H N N 178
DT H72 H N N 179
DT H73 H N N 180
DT H6 H N N 181
HOH O O N N 182
HOH H1 H N N 183
HOH H2 H N N 184
UMS OP3 O N N 185
UMS P P N N 186
UMS OP1 O N N 187
UMS OP2 O N N 188
UMS "O5'" O N N 189
UMS "C5'" C N N 190
UMS "C4'" C N R 191
UMS "O4'" O N N 192
UMS "C3'" C N R 193
UMS "O3'" O N N 194
UMS "C2'" C N R 195
UMS "SE2'" SE N N 196
UMS "C1'" C N R 197
UMS "CA'" C N N 198
UMS N1 N N N 199
UMS C2 C N N 200
UMS O2 O N N 201
UMS N3 N N N 202
UMS C4 C N N 203
UMS O4 O N N 204
UMS C5 C N N 205
UMS C6 C N N 206
UMS HOP3 H N N 207
UMS HOP2 H N N 208
UMS "H5'" H N N 209
UMS "H5'2" H N N 210
UMS "H4'" H N N 211
UMS "H3'" H N N 212
UMS "HO3'" H N N 213
UMS "H2'" H N N 214
UMS "H1'" H N N 215
UMS "HA'" H N N 216
UMS "HA'2" H N N 217
UMS "HA'3" H N N 218
UMS H3 H N N 219
UMS H5 H N N 220
UMS H6 H N N 221
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5SE P "O5'" sing N N 1
5SE N1 "C1'" sing N N 2
5SE N1 C2 sing N N 3
5SE C2 O2 doub N N 4
5SE N3 C2 sing N N 5
5SE C4 N3 doub N N 6
5SE N4 C4 sing N N 7
5SE N4 HN4 sing N N 8
5SE N4 HN4A sing N N 9
5SE C5 C4 sing N N 10
5SE C5 C6 doub N N 11
5SE C6 N1 sing N N 12
5SE C6 H6 sing N N 13
5SE "C1'" "H1'" sing N N 14
5SE OP3 P sing N N 15
5SE OP3 HOP3 sing N N 16
5SE "C2'" "C1'" sing N N 17
5SE "C2'" "H2'" sing N N 18
5SE "C2'" "H2'A" sing N N 19
5SE OP2 P sing N N 20
5SE OP2 HOP2 sing N N 21
5SE "C3'" "C2'" sing N N 22
5SE "C3'" "C4'" sing N N 23
5SE "C3'" "H3'" sing N N 24
5SE "O3'" "C3'" sing N N 25
5SE "O3'" "HO3'" sing N N 26
5SE "C4'" "O4'" sing N N 27
5SE "C4'" "H4'" sing N N 28
5SE "O4'" "C1'" sing N N 29
5SE "C5'" "C4'" sing N N 30
5SE "C5'" "H5'" sing N N 31
5SE "C5'" "H5'A" sing N N 32
5SE "O5'" "C5'" sing N N 33
5SE CA5 SE5 sing N N 34
5SE CA5 HA5 sing N N 35
5SE CA5 HA5A sing N N 36
5SE CA5 HA5B sing N N 37
5SE SE5 C5 sing N N 38
5SE P OP1 doub N N 39
DA OP3 P sing N N 40
DA OP3 HOP3 sing N N 41
DA P OP1 doub N N 42
DA P OP2 sing N N 43
DA P "O5'" sing N N 44
DA OP2 HOP2 sing N N 45
DA "O5'" "C5'" sing N N 46
DA "C5'" "C4'" sing N N 47
DA "C5'" "H5'" sing N N 48
DA "C5'" "H5''" sing N N 49
DA "C4'" "O4'" sing N N 50
DA "C4'" "C3'" sing N N 51
DA "C4'" "H4'" sing N N 52
DA "O4'" "C1'" sing N N 53
DA "C3'" "O3'" sing N N 54
DA "C3'" "C2'" sing N N 55
DA "C3'" "H3'" sing N N 56
DA "O3'" "HO3'" sing N N 57
DA "C2'" "C1'" sing N N 58
DA "C2'" "H2'" sing N N 59
DA "C2'" "H2''" sing N N 60
DA "C1'" N9 sing N N 61
DA "C1'" "H1'" sing N N 62
DA N9 C8 sing Y N 63
DA N9 C4 sing Y N 64
DA C8 N7 doub Y N 65
DA C8 H8 sing N N 66
DA N7 C5 sing Y N 67
DA C5 C6 sing Y N 68
DA C5 C4 doub Y N 69
DA C6 N6 sing N N 70
DA C6 N1 doub Y N 71
DA N6 H61 sing N N 72
DA N6 H62 sing N N 73
DA N1 C2 sing Y N 74
DA C2 N3 doub Y N 75
DA C2 H2 sing N N 76
DA N3 C4 sing Y N 77
DC OP3 P sing N N 78
DC OP3 HOP3 sing N N 79
DC P OP1 doub N N 80
DC P OP2 sing N N 81
DC P "O5'" sing N N 82
DC OP2 HOP2 sing N N 83
DC "O5'" "C5'" sing N N 84
DC "C5'" "C4'" sing N N 85
DC "C5'" "H5'" sing N N 86
DC "C5'" "H5''" sing N N 87
DC "C4'" "O4'" sing N N 88
DC "C4'" "C3'" sing N N 89
DC "C4'" "H4'" sing N N 90
DC "O4'" "C1'" sing N N 91
DC "C3'" "O3'" sing N N 92
DC "C3'" "C2'" sing N N 93
DC "C3'" "H3'" sing N N 94
DC "O3'" "HO3'" sing N N 95
DC "C2'" "C1'" sing N N 96
DC "C2'" "H2'" sing N N 97
DC "C2'" "H2''" sing N N 98
DC "C1'" N1 sing N N 99
DC "C1'" "H1'" sing N N 100
DC N1 C2 sing N N 101
DC N1 C6 sing N N 102
DC C2 O2 doub N N 103
DC C2 N3 sing N N 104
DC N3 C4 doub N N 105
DC C4 N4 sing N N 106
DC C4 C5 sing N N 107
DC N4 H41 sing N N 108
DC N4 H42 sing N N 109
DC C5 C6 doub N N 110
DC C5 H5 sing N N 111
DC C6 H6 sing N N 112
DG OP3 P sing N N 113
DG OP3 HOP3 sing N N 114
DG P OP1 doub N N 115
DG P OP2 sing N N 116
DG P "O5'" sing N N 117
DG OP2 HOP2 sing N N 118
DG "O5'" "C5'" sing N N 119
DG "C5'" "C4'" sing N N 120
DG "C5'" "H5'" sing N N 121
DG "C5'" "H5''" sing N N 122
DG "C4'" "O4'" sing N N 123
DG "C4'" "C3'" sing N N 124
DG "C4'" "H4'" sing N N 125
DG "O4'" "C1'" sing N N 126
DG "C3'" "O3'" sing N N 127
DG "C3'" "C2'" sing N N 128
DG "C3'" "H3'" sing N N 129
DG "O3'" "HO3'" sing N N 130
DG "C2'" "C1'" sing N N 131
DG "C2'" "H2'" sing N N 132
DG "C2'" "H2''" sing N N 133
DG "C1'" N9 sing N N 134
DG "C1'" "H1'" sing N N 135
DG N9 C8 sing Y N 136
DG N9 C4 sing Y N 137
DG C8 N7 doub Y N 138
DG C8 H8 sing N N 139
DG N7 C5 sing Y N 140
DG C5 C6 sing N N 141
DG C5 C4 doub Y N 142
DG C6 O6 doub N N 143
DG C6 N1 sing N N 144
DG N1 C2 sing N N 145
DG N1 H1 sing N N 146
DG C2 N2 sing N N 147
DG C2 N3 doub N N 148
DG N2 H21 sing N N 149
DG N2 H22 sing N N 150
DG N3 C4 sing N N 151
DT OP3 P sing N N 152
DT OP3 HOP3 sing N N 153
DT P OP1 doub N N 154
DT P OP2 sing N N 155
DT P "O5'" sing N N 156
DT OP2 HOP2 sing N N 157
DT "O5'" "C5'" sing N N 158
DT "C5'" "C4'" sing N N 159
DT "C5'" "H5'" sing N N 160
DT "C5'" "H5''" sing N N 161
DT "C4'" "O4'" sing N N 162
DT "C4'" "C3'" sing N N 163
DT "C4'" "H4'" sing N N 164
DT "O4'" "C1'" sing N N 165
DT "C3'" "O3'" sing N N 166
DT "C3'" "C2'" sing N N 167
DT "C3'" "H3'" sing N N 168
DT "O3'" "HO3'" sing N N 169
DT "C2'" "C1'" sing N N 170
DT "C2'" "H2'" sing N N 171
DT "C2'" "H2''" sing N N 172
DT "C1'" N1 sing N N 173
DT "C1'" "H1'" sing N N 174
DT N1 C2 sing N N 175
DT N1 C6 sing N N 176
DT C2 O2 doub N N 177
DT C2 N3 sing N N 178
DT N3 C4 sing N N 179
DT N3 H3 sing N N 180
DT C4 O4 doub N N 181
DT C4 C5 sing N N 182
DT C5 C7 sing N N 183
DT C5 C6 doub N N 184
DT C7 H71 sing N N 185
DT C7 H72 sing N N 186
DT C7 H73 sing N N 187
DT C6 H6 sing N N 188
HOH O H1 sing N N 189
HOH O H2 sing N N 190
UMS OP3 P sing N N 191
UMS OP3 HOP3 sing N N 192
UMS P OP1 doub N N 193
UMS P OP2 sing N N 194
UMS P "O5'" sing N N 195
UMS OP2 HOP2 sing N N 196
UMS "O5'" "C5'" sing N N 197
UMS "C5'" "C4'" sing N N 198
UMS "C5'" "H5'" sing N N 199
UMS "C5'" "H5'2" sing N N 200
UMS "C4'" "O4'" sing N N 201
UMS "C4'" "C3'" sing N N 202
UMS "C4'" "H4'" sing N N 203
UMS "O4'" "C1'" sing N N 204
UMS "C3'" "O3'" sing N N 205
UMS "C3'" "C2'" sing N N 206
UMS "C3'" "H3'" sing N N 207
UMS "O3'" "HO3'" sing N N 208
UMS "C2'" "SE2'" sing N N 209
UMS "C2'" "C1'" sing N N 210
UMS "C2'" "H2'" sing N N 211
UMS "SE2'" "CA'" sing N N 212
UMS "C1'" N1 sing N N 213
UMS "C1'" "H1'" sing N N 214
UMS "CA'" "HA'" sing N N 215
UMS "CA'" "HA'2" sing N N 216
UMS "CA'" "HA'3" sing N N 217
UMS N1 C2 sing N N 218
UMS N1 C6 sing N N 219
UMS C2 O2 doub N N 220
UMS C2 N3 sing N N 221
UMS N3 C4 sing N N 222
UMS N3 H3 sing N N 223
UMS C4 O4 doub N N 224
UMS C4 C5 sing N N 225
UMS C5 C6 doub N N 226
UMS C5 H5 sing N N 227
UMS C6 H6 sing N N 228
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3IJN 'double helix'
3IJN 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 8_665 -0.520 -0.197 -0.194 -13.568 -14.026 0.369 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A UMS 2 1_555 A DA 7 8_665 -0.126 -0.134 0.327 -7.669 -11.785 2.349 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1
1 A DT 4 1_555 A DA 5 8_665 -0.331 -0.187 0.385 -3.459 -11.064 -3.935 3 A_DT4:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A DT 4 8_665 0.331 -0.187 0.385 3.459 -11.064 -3.935 4 A_DA5:DT4_A A 5 ? A 4 ? 20 1
1 A DA 7 1_555 A UMS 2 8_665 0.126 -0.134 0.327 7.669 -11.785 2.349 5 A_DA7:UMS2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 8_665 0.520 -0.197 -0.194 13.568 -14.026 0.369 6 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 8_665 A UMS 2 1_555 A DA 7 8_665 0.245 -0.965 3.203 -3.672 10.506 31.772 -3.268 -0.982 2.712 18.496
6.464 33.617 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A UMS 2 1_555 A DA 7 8_665 A DT 4 1_555 A DA 5 8_665 0.556 -3.521 6.218 4.621 9.773 64.794 -3.985 -0.166 5.718 9.054
-4.282 65.592 2 AA_UMS2DT4:DA5DA7_AA A 2 ? A 7 ? A 4 ? A 5 ?
1 A DT 4 1_555 A DA 5 8_665 A DA 5 1_555 A DT 4 8_665 0.000 -1.551 2.972 0.000 4.540 31.137 -3.603 0.000 2.725 8.401
0.000 31.458 3 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A DT 4 8_665 A DA 7 1_555 A UMS 2 8_665 -0.556 -3.521 6.218 -4.621 9.773 64.794 -3.985 0.166 5.718 9.054
4.282 65.592 4 AA_DA5DA7:UMS2DT4_AA A 5 ? A 4 ? A 7 ? A 2 ?
1 A DA 7 1_555 A UMS 2 8_665 A DC 8 1_555 A DG 1 8_665 -0.245 -0.965 3.203 3.672 10.506 31.772 -3.268 0.982 2.712 18.496
-6.464 33.617 5 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1DNS
_pdbx_initial_refinement_model.details ?
#