data_3HG8
#
_entry.id 3HG8
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3HG8 pdb_00003hg8 10.2210/pdb3hg8/pdb
NDB NA0001 ? ?
RCSB RCSB053095 ? ?
WWPDB D_1000053095 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2009-07-21
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 1 2 2017-11-01
4 'Structure model' 1 3 2018-01-24
5 'Structure model' 1 4 2019-07-24
6 'Structure model' 1 5 2023-08-02
7 'Structure model' 1 6 2024-05-22
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Refinement description'
3 4 'Structure model' 'Structure summary'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Refinement description'
6 6 'Structure model' 'Database references'
7 6 'Structure model' 'Derived calculations'
8 6 'Structure model' 'Source and taxonomy'
9 7 'Structure model' 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' audit_author
3 5 'Structure model' software
4 6 'Structure model' citation
5 6 'Structure model' citation_author
6 6 'Structure model' database_2
7 6 'Structure model' ndb_struct_conf_na
8 6 'Structure model' ndb_struct_na_base_pair
9 6 'Structure model' ndb_struct_na_base_pair_step
10 6 'Structure model' pdbx_entity_src_syn
11 6 'Structure model' struct_conn
12 6 'Structure model' struct_conn_type
13 7 'Structure model' chem_comp_atom
14 7 'Structure model' chem_comp_bond
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_audit_author.name'
2 5 'Structure model' '_software.classification'
3 5 'Structure model' '_software.contact_author'
4 5 'Structure model' '_software.contact_author_email'
5 5 'Structure model' '_software.language'
6 5 'Structure model' '_software.location'
7 5 'Structure model' '_software.name'
8 5 'Structure model' '_software.type'
9 5 'Structure model' '_software.version'
10 6 'Structure model' '_citation.country'
11 6 'Structure model' '_citation.journal_abbrev'
12 6 'Structure model' '_citation.journal_id_CSD'
13 6 'Structure model' '_citation.journal_id_ISSN'
14 6 'Structure model' '_citation.journal_volume'
15 6 'Structure model' '_citation.pdbx_database_id_DOI'
16 6 'Structure model' '_citation.title'
17 6 'Structure model' '_citation.year'
18 6 'Structure model' '_database_2.pdbx_DOI'
19 6 'Structure model' '_database_2.pdbx_database_accession'
20 6 'Structure model' '_ndb_struct_na_base_pair.buckle'
21 6 'Structure model' '_ndb_struct_na_base_pair.opening'
22 6 'Structure model' '_ndb_struct_na_base_pair.propeller'
23 6 'Structure model' '_ndb_struct_na_base_pair.shear'
24 6 'Structure model' '_ndb_struct_na_base_pair.stagger'
25 6 'Structure model' '_ndb_struct_na_base_pair.stretch'
26 6 'Structure model' '_ndb_struct_na_base_pair_step.helical_rise'
27 6 'Structure model' '_ndb_struct_na_base_pair_step.helical_twist'
28 6 'Structure model' '_ndb_struct_na_base_pair_step.inclination'
29 6 'Structure model' '_ndb_struct_na_base_pair_step.rise'
30 6 'Structure model' '_ndb_struct_na_base_pair_step.roll'
31 6 'Structure model' '_ndb_struct_na_base_pair_step.shift'
32 6 'Structure model' '_ndb_struct_na_base_pair_step.slide'
33 6 'Structure model' '_ndb_struct_na_base_pair_step.tilt'
34 6 'Structure model' '_ndb_struct_na_base_pair_step.tip'
35 6 'Structure model' '_ndb_struct_na_base_pair_step.twist'
36 6 'Structure model' '_ndb_struct_na_base_pair_step.x_displacement'
37 6 'Structure model' '_ndb_struct_na_base_pair_step.y_displacement'
38 6 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id'
39 6 'Structure model' '_pdbx_entity_src_syn.organism_scientific'
#
_pdbx_database_status.entry_id 3HG8
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2009-05-13
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3HGA . unspecified
PDB 3HGD . unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Sheng, J.' 1
'Hassan, A.E.A.' 2
'Zhang, W.' 3
'Huang, Z.' 4
#
_citation.id primary
_citation.title 'Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate'
_citation.journal_abbrev Chemistryselect
_citation.journal_volume 8
_citation.page_first ?
_citation.page_last ?
_citation.year 2023
_citation.journal_id_ASTM ?
_citation.country DE
_citation.journal_id_ISSN 2365-6549
_citation.journal_id_CSD ?
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed ?
_citation.pdbx_database_id_DOI 10.1002/slct.202302253
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Fang, Z.' 1 ?
primary 'Dantsu, Y.' 2 ?
primary 'Chen, C.' 3 ?
primary 'Zhang, W.' 4 ?
primary 'Huang, Z.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man "5'-D(*GP*(UMS)P*GP*(US2)P*AP*CP*AP*C)-3'" 2537.642 1 ? ? ? ?
2 water nat water 18.015 38 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(US2)(DA)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GUGUACAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 UMS n
1 3 DG n
1 4 US2 n
1 5 DA n
1 6 DC n
1 7 DA n
1 8 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details
'the Se and S containing fragments are chemically synthesized and incorporated into DNA by solid phase synthesis'
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ?
'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?
'C10 H14 N5 O7 P' 347.221
HOH non-polymer . WATER ? 'H2 O' 18.015
UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ?
'C10 H15 N2 O8 P Se' 401.168
US2 'DNA linking' n
;2'-deoxy-5-(methylsulfanyl)uridine 5'-(dihydrogen phosphate)
;
"5-SMe-deoxyuridine-5'-phosphate" 'C10 H15 N2 O8 P S' 354.273
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 UMS 2 2 2 UMS UMS A . n
A 1 3 DG 3 3 3 DG G A . n
A 1 4 US2 4 4 4 US2 US2 A . n
A 1 5 DA 5 5 5 DA A A . n
A 1 6 DC 6 6 6 DC C A . n
A 1 7 DA 7 7 7 DA A A . n
A 1 8 DC 8 8 8 DC C A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 20 20 HOH HOH A .
B 2 HOH 2 22 22 HOH HOH A .
B 2 HOH 3 24 24 HOH HOH A .
B 2 HOH 4 25 25 HOH HOH A .
B 2 HOH 5 27 27 HOH HOH A .
B 2 HOH 6 28 28 HOH HOH A .
B 2 HOH 7 29 29 HOH HOH A .
B 2 HOH 8 30 30 HOH HOH A .
B 2 HOH 9 31 31 HOH HOH A .
B 2 HOH 10 32 32 HOH HOH A .
B 2 HOH 11 34 34 HOH HOH A .
B 2 HOH 12 35 35 HOH HOH A .
B 2 HOH 13 36 36 HOH HOH A .
B 2 HOH 14 37 37 HOH HOH A .
B 2 HOH 15 38 38 HOH HOH A .
B 2 HOH 16 40 40 HOH HOH A .
B 2 HOH 17 41 41 HOH HOH A .
B 2 HOH 18 42 42 HOH HOH A .
B 2 HOH 19 45 45 HOH HOH A .
B 2 HOH 20 46 46 HOH HOH A .
B 2 HOH 21 49 49 HOH HOH A .
B 2 HOH 22 50 50 HOH HOH A .
B 2 HOH 23 51 51 HOH HOH A .
B 2 HOH 24 52 52 HOH HOH A .
B 2 HOH 25 53 53 HOH HOH A .
B 2 HOH 26 54 54 HOH HOH A .
B 2 HOH 27 55 55 HOH HOH A .
B 2 HOH 28 57 57 HOH HOH A .
B 2 HOH 29 58 58 HOH HOH A .
B 2 HOH 30 59 59 HOH HOH A .
B 2 HOH 31 60 60 HOH HOH A .
B 2 HOH 32 61 61 HOH HOH A .
B 2 HOH 33 62 62 HOH HOH A .
B 2 HOH 34 63 63 HOH HOH A .
B 2 HOH 35 67 67 HOH HOH A .
B 2 HOH 36 69 69 HOH HOH A .
B 2 HOH 37 73 73 HOH HOH A .
B 2 HOH 38 80 80 HOH HOH A .
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement
http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ?
2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/
Fortran_77 ?
4 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ?
5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
6 CBASS . ? ? ? ? 'data collection' ? ? ?
7 HKL-2000 . ? ? ? ? 'data reduction' ? ? ?
8 HKL-2000 . ? ? ? ? 'data scaling' ? ? ?
9 CNS . ? ? ? ? phasing ? ? ?
#
_cell.entry_id 3HG8
_cell.length_a 42.882
_cell.length_b 42.882
_cell.length_c 23.687
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 8
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3HG8
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 3HG8
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.15
_exptl_crystal.density_percent_sol 42.67
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details 'MPD,sodium cacodylate,spermine tetra-HCl, vapor diffusion, hanging drop, temperature 298K'
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC Q4'
_diffrn_detector.pdbx_collection_date 2008-10-22
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator 'Si(111)'
_diffrn_radiation.pdbx_diffrn_protocol SAD
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'NSLS BEAMLINE X12B'
_diffrn_source.pdbx_synchrotron_site NSLS
_diffrn_source.pdbx_synchrotron_beamline X12B
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 3HG8
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 50.000
_reflns.d_resolution_high 1.380
_reflns.number_obs 4616
_reflns.number_all ?
_reflns.percent_possible_obs 94.000
_reflns.pdbx_Rmerge_I_obs 0.063
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 23.015
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 8.400
_reflns.R_free_details ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.percent_possible_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_unique_obs
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_ordinal
1.38 1.43 67.80 0.240 ? ? 5.20 ? ? ? ? ? ? ? 1
1.43 1.49 78.10 0.199 ? ? 6.30 ? ? ? ? ? ? ? 2
1.49 1.55 97.20 0.143 ? ? 7.70 ? ? ? ? ? ? ? 3
1.55 1.64 100.00 0.122 ? ? 9.40 ? ? ? ? ? ? ? 4
1.64 1.74 100.00 0.087 ? ? 9.40 ? ? ? ? ? ? ? 5
1.74 1.87 99.80 0.088 ? ? 9.50 ? ? ? ? ? ? ? 6
1.87 2.06 100.00 0.076 ? ? 9.30 ? ? ? ? ? ? ? 7
2.06 2.36 100.00 0.072 ? ? 9.20 ? ? ? ? ? ? ? 8
2.36 2.97 100.00 0.059 ? ? 9.00 ? ? ? ? ? ? ? 9
2.97 50.00 96.40 0.047 ? ? 7.90 ? ? ? ? ? ? ? 10
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 3HG8
_refine.ls_number_reflns_obs 4373
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F .
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 20.73
_refine.ls_d_res_high 1.38
_refine.ls_percent_reflns_obs 94.06
_refine.ls_R_factor_obs 0.18726
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.18702
_refine.ls_R_factor_R_free 0.19236
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.7
_refine.ls_number_reflns_R_free 216
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min 0.80
_refine.occupancy_max 1.00
_refine.correlation_coeff_Fo_to_Fc 0.954
_refine.correlation_coeff_Fo_to_Fc_free 0.959
_refine.B_iso_mean 12.430
_refine.aniso_B[1][1] 0.01
_refine.aniso_B[2][2] 0.01
_refine.aniso_B[3][3] -0.02
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details MASK
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R 0.064
_refine.pdbx_overall_ESU_R_Free 0.059
_refine.overall_SU_ML 0.033
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B 0.849
_refine.ls_redundancy_reflns_obs ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 163
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 38
_refine_hist.number_atoms_total 201
_refine_hist.d_res_high 1.38
_refine_hist.d_res_low 20.73
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
r_bond_refined_d 0.007 0.021 ? 178 'X-RAY DIFFRACTION' ?
r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ?
r_angle_refined_deg 3.116 3.000 ? 262 'X-RAY DIFFRACTION' ?
r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ?
r_chiral_restr 0.087 0.200 ? 30 'X-RAY DIFFRACTION' ?
r_gen_planes_refined 0.007 0.020 ? 81 'X-RAY DIFFRACTION' ?
r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbd_refined 0.477 0.200 ? 74 'X-RAY DIFFRACTION' ?
r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_nbtor_refined 0.285 0.200 ? 100 'X-RAY DIFFRACTION' ?
r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_refined 0.111 0.200 ? 34 'X-RAY DIFFRACTION' ?
r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_refined 0.195 0.200 ? 29 'X-RAY DIFFRACTION' ?
r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_refined 0.076 0.200 ? 9 'X-RAY DIFFRACTION' ?
r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ?
r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ?
r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
r_scbond_it 0.871 3.000 ? 253 'X-RAY DIFFRACTION' ?
r_scangle_it 1.266 4.500 ? 262 'X-RAY DIFFRACTION' ?
r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ?
r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.d_res_high 1.380
_refine_ls_shell.d_res_low 1.416
_refine_ls_shell.number_reflns_R_work 215
_refine_ls_shell.R_factor_R_work 0.228
_refine_ls_shell.percent_reflns_obs 65.80
_refine_ls_shell.R_factor_R_free 0.222
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.number_reflns_R_free 14
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.number_reflns_obs ?
#
_struct.entry_id 3HG8
_struct.title 'Crystal Structure of 5-SMe Derivatized DNA'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3HG8
_struct_keywords.text '5-SMe DNA, DNA'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 3HG8
_struct_ref.pdbx_db_accession 3HG8
_struct_ref.entity_id 1
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code GUGUACAC
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3HG8
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 3HG8
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 1920 ?
1 MORE 8 ?
1 'SSA (A^2)' 2940 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.605 ? ?
covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.598 ? ?
covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A US2 4 P ? ? A DG 3 A US2 4 1_555 ? ? ? ? ? ? ? 1.601 ? ?
covale4 covale both ? A US2 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A US2 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.606 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A US2 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A US2 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A US2 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A US2 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A US2 4 N3 ? ? A DA 5 A US2 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A US2 4 O4 ? ? A DA 5 A US2 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
_pdbx_validate_rmsd_angle.id 1
_pdbx_validate_rmsd_angle.PDB_model_num 1
_pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'"
_pdbx_validate_rmsd_angle.auth_asym_id_1 A
_pdbx_validate_rmsd_angle.auth_comp_id_1 DC
_pdbx_validate_rmsd_angle.auth_seq_id_1 8
_pdbx_validate_rmsd_angle.PDB_ins_code_1 ?
_pdbx_validate_rmsd_angle.label_alt_id_1 ?
_pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'"
_pdbx_validate_rmsd_angle.auth_asym_id_2 A
_pdbx_validate_rmsd_angle.auth_comp_id_2 DC
_pdbx_validate_rmsd_angle.auth_seq_id_2 8
_pdbx_validate_rmsd_angle.PDB_ins_code_2 ?
_pdbx_validate_rmsd_angle.label_alt_id_2 ?
_pdbx_validate_rmsd_angle.auth_atom_id_3 N1
_pdbx_validate_rmsd_angle.auth_asym_id_3 A
_pdbx_validate_rmsd_angle.auth_comp_id_3 DC
_pdbx_validate_rmsd_angle.auth_seq_id_3 8
_pdbx_validate_rmsd_angle.PDB_ins_code_3 ?
_pdbx_validate_rmsd_angle.label_alt_id_3 ?
_pdbx_validate_rmsd_angle.angle_value 110.76
_pdbx_validate_rmsd_angle.angle_target_value 108.30
_pdbx_validate_rmsd_angle.angle_deviation 2.46
_pdbx_validate_rmsd_angle.angle_standard_deviation 0.30
_pdbx_validate_rmsd_angle.linker_flag N
#
loop_
_pdbx_struct_mod_residue.id
_pdbx_struct_mod_residue.label_asym_id
_pdbx_struct_mod_residue.label_comp_id
_pdbx_struct_mod_residue.label_seq_id
_pdbx_struct_mod_residue.auth_asym_id
_pdbx_struct_mod_residue.auth_comp_id
_pdbx_struct_mod_residue.auth_seq_id
_pdbx_struct_mod_residue.PDB_ins_code
_pdbx_struct_mod_residue.parent_comp_id
_pdbx_struct_mod_residue.details
1 A UMS 2 A UMS 2 ? DU ?
2 A US2 4 A US2 4 ? DU ?
#
_phasing.method MR
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
HOH O O N N 108
HOH H1 H N N 109
HOH H2 H N N 110
UMS OP3 O N N 111
UMS P P N N 112
UMS OP1 O N N 113
UMS OP2 O N N 114
UMS "O5'" O N N 115
UMS "C5'" C N N 116
UMS "C4'" C N R 117
UMS "O4'" O N N 118
UMS "C3'" C N R 119
UMS "O3'" O N N 120
UMS "C2'" C N R 121
UMS "SE2'" SE N N 122
UMS "C1'" C N R 123
UMS "CA'" C N N 124
UMS N1 N N N 125
UMS C2 C N N 126
UMS O2 O N N 127
UMS N3 N N N 128
UMS C4 C N N 129
UMS O4 O N N 130
UMS C5 C N N 131
UMS C6 C N N 132
UMS HOP3 H N N 133
UMS HOP2 H N N 134
UMS "H5'" H N N 135
UMS "H5'2" H N N 136
UMS "H4'" H N N 137
UMS "H3'" H N N 138
UMS "HO3'" H N N 139
UMS "H2'" H N N 140
UMS "H1'" H N N 141
UMS "HA'" H N N 142
UMS "HA'2" H N N 143
UMS "HA'3" H N N 144
UMS H3 H N N 145
UMS H5 H N N 146
UMS H6 H N N 147
US2 P P N N 148
US2 N1 N N N 149
US2 C6 C N N 150
US2 C2 C N N 151
US2 O2 O N N 152
US2 N3 N N N 153
US2 C4 C N N 154
US2 O4 O N N 155
US2 C5 C N N 156
US2 S5 S N N 157
US2 C5A C N N 158
US2 "C1'" C N R 159
US2 "O4'" O N N 160
US2 "C4'" C N R 161
US2 "C3'" C N S 162
US2 "O3'" O N N 163
US2 "C2'" C N N 164
US2 "C5'" C N N 165
US2 "O5'" O N N 166
US2 O1P O N N 167
US2 O2P O N N 168
US2 H6 H N N 169
US2 HN3 H N N 170
US2 H15A H N N 171
US2 H25A H N N 172
US2 H35A H N N 173
US2 "H1'" H N N 174
US2 "H4'" H N N 175
US2 "H3'" H N N 176
US2 "HO3'" H N N 177
US2 "H12'" H N N 178
US2 "H22'" H N N 179
US2 "H15'" H N N 180
US2 "H25'" H N N 181
US2 O3P O N N 182
US2 HO2P H N N 183
US2 HO3P H N N 184
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P sing N N 1
DA OP3 HOP3 sing N N 2
DA P OP1 doub N N 3
DA P OP2 sing N N 4
DA P "O5'" sing N N 5
DA OP2 HOP2 sing N N 6
DA "O5'" "C5'" sing N N 7
DA "C5'" "C4'" sing N N 8
DA "C5'" "H5'" sing N N 9
DA "C5'" "H5''" sing N N 10
DA "C4'" "O4'" sing N N 11
DA "C4'" "C3'" sing N N 12
DA "C4'" "H4'" sing N N 13
DA "O4'" "C1'" sing N N 14
DA "C3'" "O3'" sing N N 15
DA "C3'" "C2'" sing N N 16
DA "C3'" "H3'" sing N N 17
DA "O3'" "HO3'" sing N N 18
DA "C2'" "C1'" sing N N 19
DA "C2'" "H2'" sing N N 20
DA "C2'" "H2''" sing N N 21
DA "C1'" N9 sing N N 22
DA "C1'" "H1'" sing N N 23
DA N9 C8 sing Y N 24
DA N9 C4 sing Y N 25
DA C8 N7 doub Y N 26
DA C8 H8 sing N N 27
DA N7 C5 sing Y N 28
DA C5 C6 sing Y N 29
DA C5 C4 doub Y N 30
DA C6 N6 sing N N 31
DA C6 N1 doub Y N 32
DA N6 H61 sing N N 33
DA N6 H62 sing N N 34
DA N1 C2 sing Y N 35
DA C2 N3 doub Y N 36
DA C2 H2 sing N N 37
DA N3 C4 sing Y N 38
DC OP3 P sing N N 39
DC OP3 HOP3 sing N N 40
DC P OP1 doub N N 41
DC P OP2 sing N N 42
DC P "O5'" sing N N 43
DC OP2 HOP2 sing N N 44
DC "O5'" "C5'" sing N N 45
DC "C5'" "C4'" sing N N 46
DC "C5'" "H5'" sing N N 47
DC "C5'" "H5''" sing N N 48
DC "C4'" "O4'" sing N N 49
DC "C4'" "C3'" sing N N 50
DC "C4'" "H4'" sing N N 51
DC "O4'" "C1'" sing N N 52
DC "C3'" "O3'" sing N N 53
DC "C3'" "C2'" sing N N 54
DC "C3'" "H3'" sing N N 55
DC "O3'" "HO3'" sing N N 56
DC "C2'" "C1'" sing N N 57
DC "C2'" "H2'" sing N N 58
DC "C2'" "H2''" sing N N 59
DC "C1'" N1 sing N N 60
DC "C1'" "H1'" sing N N 61
DC N1 C2 sing N N 62
DC N1 C6 sing N N 63
DC C2 O2 doub N N 64
DC C2 N3 sing N N 65
DC N3 C4 doub N N 66
DC C4 N4 sing N N 67
DC C4 C5 sing N N 68
DC N4 H41 sing N N 69
DC N4 H42 sing N N 70
DC C5 C6 doub N N 71
DC C5 H5 sing N N 72
DC C6 H6 sing N N 73
DG OP3 P sing N N 74
DG OP3 HOP3 sing N N 75
DG P OP1 doub N N 76
DG P OP2 sing N N 77
DG P "O5'" sing N N 78
DG OP2 HOP2 sing N N 79
DG "O5'" "C5'" sing N N 80
DG "C5'" "C4'" sing N N 81
DG "C5'" "H5'" sing N N 82
DG "C5'" "H5''" sing N N 83
DG "C4'" "O4'" sing N N 84
DG "C4'" "C3'" sing N N 85
DG "C4'" "H4'" sing N N 86
DG "O4'" "C1'" sing N N 87
DG "C3'" "O3'" sing N N 88
DG "C3'" "C2'" sing N N 89
DG "C3'" "H3'" sing N N 90
DG "O3'" "HO3'" sing N N 91
DG "C2'" "C1'" sing N N 92
DG "C2'" "H2'" sing N N 93
DG "C2'" "H2''" sing N N 94
DG "C1'" N9 sing N N 95
DG "C1'" "H1'" sing N N 96
DG N9 C8 sing Y N 97
DG N9 C4 sing Y N 98
DG C8 N7 doub Y N 99
DG C8 H8 sing N N 100
DG N7 C5 sing Y N 101
DG C5 C6 sing N N 102
DG C5 C4 doub Y N 103
DG C6 O6 doub N N 104
DG C6 N1 sing N N 105
DG N1 C2 sing N N 106
DG N1 H1 sing N N 107
DG C2 N2 sing N N 108
DG C2 N3 doub N N 109
DG N2 H21 sing N N 110
DG N2 H22 sing N N 111
DG N3 C4 sing N N 112
HOH O H1 sing N N 113
HOH O H2 sing N N 114
UMS OP3 P sing N N 115
UMS OP3 HOP3 sing N N 116
UMS P OP1 doub N N 117
UMS P OP2 sing N N 118
UMS P "O5'" sing N N 119
UMS OP2 HOP2 sing N N 120
UMS "O5'" "C5'" sing N N 121
UMS "C5'" "C4'" sing N N 122
UMS "C5'" "H5'" sing N N 123
UMS "C5'" "H5'2" sing N N 124
UMS "C4'" "O4'" sing N N 125
UMS "C4'" "C3'" sing N N 126
UMS "C4'" "H4'" sing N N 127
UMS "O4'" "C1'" sing N N 128
UMS "C3'" "O3'" sing N N 129
UMS "C3'" "C2'" sing N N 130
UMS "C3'" "H3'" sing N N 131
UMS "O3'" "HO3'" sing N N 132
UMS "C2'" "SE2'" sing N N 133
UMS "C2'" "C1'" sing N N 134
UMS "C2'" "H2'" sing N N 135
UMS "SE2'" "CA'" sing N N 136
UMS "C1'" N1 sing N N 137
UMS "C1'" "H1'" sing N N 138
UMS "CA'" "HA'" sing N N 139
UMS "CA'" "HA'2" sing N N 140
UMS "CA'" "HA'3" sing N N 141
UMS N1 C2 sing N N 142
UMS N1 C6 sing N N 143
UMS C2 O2 doub N N 144
UMS C2 N3 sing N N 145
UMS N3 C4 sing N N 146
UMS N3 H3 sing N N 147
UMS C4 O4 doub N N 148
UMS C4 C5 sing N N 149
UMS C5 C6 doub N N 150
UMS C5 H5 sing N N 151
UMS C6 H6 sing N N 152
US2 P O2P sing N N 153
US2 N1 C6 sing N N 154
US2 N1 "C1'" sing N N 155
US2 C6 H6 sing N N 156
US2 C2 N1 sing N N 157
US2 O2 C2 doub N N 158
US2 N3 C4 sing N N 159
US2 N3 C2 sing N N 160
US2 N3 HN3 sing N N 161
US2 C4 C5 sing N N 162
US2 O4 C4 doub N N 163
US2 C5 S5 sing N N 164
US2 C5 C6 doub N N 165
US2 S5 C5A sing N N 166
US2 C5A H15A sing N N 167
US2 C5A H25A sing N N 168
US2 C5A H35A sing N N 169
US2 "C1'" "O4'" sing N N 170
US2 "C1'" "C2'" sing N N 171
US2 "C1'" "H1'" sing N N 172
US2 "O4'" "C4'" sing N N 173
US2 "C4'" "C3'" sing N N 174
US2 "C4'" "C5'" sing N N 175
US2 "C4'" "H4'" sing N N 176
US2 "C3'" "O3'" sing N N 177
US2 "C3'" "H3'" sing N N 178
US2 "O3'" "HO3'" sing N N 179
US2 "C2'" "C3'" sing N N 180
US2 "C2'" "H12'" sing N N 181
US2 "C2'" "H22'" sing N N 182
US2 "C5'" "H15'" sing N N 183
US2 "C5'" "H25'" sing N N 184
US2 "O5'" "C5'" sing N N 185
US2 "O5'" P sing N N 186
US2 O1P P doub N N 187
US2 P O3P sing N N 188
US2 O2P HO2P sing N N 189
US2 O3P HO3P sing N N 190
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
3HG8 'a-form double helix'
3HG8 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 7_555 -0.345 -0.113 -0.346 -19.699 -13.928 -2.574 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A UMS 2 1_555 A DA 7 7_555 -0.067 -0.100 0.142 -5.612 -11.295 2.449 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 7_555 -0.250 -0.231 0.268 -4.156 -13.783 -0.021 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A US2 4 1_555 A DA 5 7_555 -0.101 -0.185 0.438 -7.414 -10.267 -3.534 4 A_US24:DA5_A A 4 ? A 5 ? 20 1
1 A DA 5 1_555 A US2 4 7_555 0.101 -0.185 0.438 7.414 -10.267 -3.534 5 A_DA5:US24_A A 5 ? A 4 ? 20 1
1 A DC 6 1_555 A DG 3 7_555 0.250 -0.231 0.268 4.156 -13.783 -0.021 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DA 7 1_555 A UMS 2 7_555 0.067 -0.100 0.142 5.612 -11.295 2.449 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 7_555 0.345 -0.113 -0.346 19.699 -13.928 -2.574 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.526 -0.843 3.032 -2.856 13.229 30.491 -3.393 -1.333 2.412 23.741
5.125 33.294 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.732 -1.485 3.065 0.077 12.020 28.630 -4.747 -1.356 2.273 23.064
-0.148 31.002 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 7_555 A US2 4 1_555 A DA 5 7_555 -0.308 -1.869 3.326 -0.666 0.635 36.419 -3.078 0.399 3.299 1.015
1.065 36.430 3 AA_DG3US24:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A US2 4 1_555 A DA 5 7_555 A DA 5 1_555 A US2 4 7_555 0.000 -1.565 2.794 0.000 2.898 28.244 -3.745 0.000 2.624 5.918
0.000 28.390 4 AA_US24DA5:US24DA5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A DA 5 1_555 A US2 4 7_555 A DC 6 1_555 A DG 3 7_555 0.308 -1.869 3.326 0.666 0.635 36.419 -3.078 -0.399 3.299 1.015
-1.065 36.430 5 AA_DA5DC6:DG3US24_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.732 -1.485 3.065 -0.077 12.020 28.630 -4.747 1.356 2.273 23.064
0.148 31.002 6 AA_DC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.526 -0.843 3.032 2.856 13.229 30.491 -3.393 1.333 2.412 23.741
-5.125 33.294 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 3HG8
_atom_sites.fract_transf_matrix[1][1] 0.023320
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023320
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.042217
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
S
SE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
ATOM 1 O "O5'" . DG A 1 1 ? 29.197 18.988 -5.273 1.00 11.21 ? 1 DG A "O5'" 1
ATOM 2 C "C5'" . DG A 1 1 ? 29.115 17.578 -5.026 1.00 9.20 ? 1 DG A "C5'" 1
ATOM 3 C "C4'" . DG A 1 1 ? 30.359 17.047 -4.332 1.00 9.37 ? 1 DG A "C4'" 1
ATOM 4 O "O4'" . DG A 1 1 ? 31.536 17.255 -5.147 1.00 9.05 ? 1 DG A "O4'" 1
ATOM 5 C "C3'" . DG A 1 1 ? 30.717 17.748 -3.039 1.00 8.81 ? 1 DG A "C3'" 1
ATOM 6 O "O3'" . DG A 1 1 ? 29.925 17.241 -1.919 1.00 9.58 ? 1 DG A "O3'" 1
ATOM 7 C "C2'" . DG A 1 1 ? 32.199 17.433 -2.897 1.00 8.91 ? 1 DG A "C2'" 1
ATOM 8 C "C1'" . DG A 1 1 ? 32.647 17.591 -4.341 1.00 9.37 ? 1 DG A "C1'" 1
ATOM 9 N N9 . DG A 1 1 ? 33.050 18.964 -4.632 1.00 9.22 ? 1 DG A N9 1
ATOM 10 C C8 . DG A 1 1 ? 32.296 19.945 -5.235 1.00 9.84 ? 1 DG A C8 1
ATOM 11 N N7 . DG A 1 1 ? 32.922 21.084 -5.344 1.00 9.84 ? 1 DG A N7 1
ATOM 12 C C5 . DG A 1 1 ? 34.165 20.844 -4.769 1.00 9.22 ? 1 DG A C5 1
ATOM 13 C C6 . DG A 1 1 ? 35.276 21.703 -4.603 1.00 9.12 ? 1 DG A C6 1
ATOM 14 O O6 . DG A 1 1 ? 35.375 22.886 -4.947 1.00 10.25 ? 1 DG A O6 1
ATOM 15 N N1 . DG A 1 1 ? 36.343 21.070 -3.972 1.00 9.64 ? 1 DG A N1 1
ATOM 16 C C2 . DG A 1 1 ? 36.340 19.753 -3.559 1.00 9.86 ? 1 DG A C2 1
ATOM 17 N N2 . DG A 1 1 ? 37.459 19.302 -2.974 1.00 11.04 ? 1 DG A N2 1
ATOM 18 N N3 . DG A 1 1 ? 35.305 18.932 -3.714 1.00 9.58 ? 1 DG A N3 1
ATOM 19 C C4 . DG A 1 1 ? 34.257 19.543 -4.319 1.00 9.30 ? 1 DG A C4 1
HETATM 20 P P . UMS A 1 2 ? 29.426 18.151 -0.695 1.00 10.23 ? 2 UMS A P 1
HETATM 21 O OP1 . UMS A 1 2 ? 28.549 17.304 0.195 1.00 11.53 ? 2 UMS A OP1 1
HETATM 22 O OP2 . UMS A 1 2 ? 28.903 19.498 -1.199 1.00 11.37 ? 2 UMS A OP2 1
HETATM 23 O "O5'" . UMS A 1 2 ? 30.756 18.514 0.129 1.00 9.42 ? 2 UMS A "O5'" 1
HETATM 24 C "C5'" . UMS A 1 2 ? 31.434 17.474 0.821 1.00 9.60 ? 2 UMS A "C5'" 1
HETATM 25 C "C4'" . UMS A 1 2 ? 32.827 17.915 1.216 1.00 10.02 ? 2 UMS A "C4'" 1
HETATM 26 O "O4'" . UMS A 1 2 ? 33.596 18.358 0.097 1.00 9.77 ? 2 UMS A "O4'" 1
HETATM 27 C "C3'" . UMS A 1 2 ? 32.809 19.115 2.123 1.00 10.82 ? 2 UMS A "C3'" 1
HETATM 28 O "O3'" . UMS A 1 2 ? 32.438 18.711 3.502 1.00 12.74 ? 2 UMS A "O3'" 1
HETATM 29 C "C2'" . UMS A 1 2 ? 34.206 19.674 1.981 1.00 10.78 ? 2 UMS A "C2'" 1
HETATM 30 SE "SE2'" . UMS A 1 2 ? 35.471 18.594 3.062 0.80 11.99 ? 2 UMS A "SE2'" 1
HETATM 31 C "C1'" . UMS A 1 2 ? 34.445 19.445 0.498 1.00 9.59 ? 2 UMS A "C1'" 1
HETATM 32 C "CA'" . UMS A 1 2 ? 37.045 19.768 2.874 1.00 12.50 ? 2 UMS A "CA'" 1
HETATM 33 N N1 . UMS A 1 2 ? 34.115 20.614 -0.341 1.00 9.99 ? 2 UMS A N1 1
HETATM 34 C C2 . UMS A 1 2 ? 35.040 21.577 -0.529 1.00 9.93 ? 2 UMS A C2 1
HETATM 35 O O2 . UMS A 1 2 ? 36.157 21.505 0.024 1.00 10.75 ? 2 UMS A O2 1
HETATM 36 N N3 . UMS A 1 2 ? 34.772 22.650 -1.308 1.00 9.75 ? 2 UMS A N3 1
HETATM 37 C C4 . UMS A 1 2 ? 33.582 22.799 -1.932 1.00 9.60 ? 2 UMS A C4 1
HETATM 38 O O4 . UMS A 1 2 ? 33.374 23.809 -2.642 1.00 10.03 ? 2 UMS A O4 1
HETATM 39 C C5 . UMS A 1 2 ? 32.608 21.816 -1.762 1.00 10.40 ? 2 UMS A C5 1
HETATM 40 C C6 . UMS A 1 2 ? 32.913 20.720 -0.952 1.00 9.83 ? 2 UMS A C6 1
ATOM 41 P P . DG A 1 3 ? 31.695 19.667 4.545 1.00 18.19 ? 3 DG A P 1
ATOM 42 O OP1 . DG A 1 3 ? 31.207 18.771 5.693 1.00 20.31 ? 3 DG A OP1 1
ATOM 43 O OP2 . DG A 1 3 ? 30.605 20.601 3.951 1.00 19.59 ? 3 DG A OP2 1
ATOM 44 O "O5'" . DG A 1 3 ? 32.868 20.549 5.046 1.00 17.68 ? 3 DG A "O5'" 1
ATOM 45 C "C5'" . DG A 1 3 ? 32.833 21.954 4.991 1.00 15.43 ? 3 DG A "C5'" 1
ATOM 46 C "C4'" . DG A 1 3 ? 34.254 22.464 4.938 1.00 14.92 ? 3 DG A "C4'" 1
ATOM 47 O "O4'" . DG A 1 3 ? 34.747 22.332 3.587 1.00 13.73 ? 3 DG A "O4'" 1
ATOM 48 C "C3'" . DG A 1 3 ? 34.369 23.938 5.235 1.00 13.80 ? 3 DG A "C3'" 1
ATOM 49 O "O3'" . DG A 1 3 ? 34.471 24.196 6.674 1.00 14.02 ? 3 DG A "O3'" 1
ATOM 50 C "C2'" . DG A 1 3 ? 35.600 24.345 4.437 1.00 12.93 ? 3 DG A "C2'" 1
ATOM 51 C "C1'" . DG A 1 3 ? 35.426 23.503 3.182 1.00 11.30 ? 3 DG A "C1'" 1
ATOM 52 N N9 . DG A 1 3 ? 34.642 24.138 2.126 1.00 10.93 ? 3 DG A N9 1
ATOM 53 C C8 . DG A 1 3 ? 33.418 23.749 1.630 1.00 10.39 ? 3 DG A C8 1
ATOM 54 N N7 . DG A 1 3 ? 32.974 24.515 0.672 1.00 10.49 ? 3 DG A N7 1
ATOM 55 C C5 . DG A 1 3 ? 33.973 25.473 0.515 1.00 9.82 ? 3 DG A C5 1
ATOM 56 C C6 . DG A 1 3 ? 34.069 26.579 -0.369 1.00 9.47 ? 3 DG A C6 1
ATOM 57 O O6 . DG A 1 3 ? 33.257 26.940 -1.228 1.00 10.02 ? 3 DG A O6 1
ATOM 58 N N1 . DG A 1 3 ? 35.253 27.300 -0.189 1.00 9.76 ? 3 DG A N1 1
ATOM 59 C C2 . DG A 1 3 ? 36.227 26.997 0.734 1.00 9.89 ? 3 DG A C2 1
ATOM 60 N N2 . DG A 1 3 ? 37.311 27.792 0.786 1.00 9.91 ? 3 DG A N2 1
ATOM 61 N N3 . DG A 1 3 ? 36.153 25.966 1.563 1.00 9.89 ? 3 DG A N3 1
ATOM 62 C C4 . DG A 1 3 ? 35.005 25.254 1.402 1.00 10.41 ? 3 DG A C4 1
HETATM 63 P P . US2 A 1 4 ? 34.001 25.558 7.372 1.00 14.39 ? 4 US2 A P 1
HETATM 64 N N1 . US2 A 1 4 ? 35.372 29.048 3.435 1.00 9.77 ? 4 US2 A N1 1
HETATM 65 C C6 . US2 A 1 4 ? 34.357 28.253 3.443 1.00 10.32 ? 4 US2 A C6 1
HETATM 66 C C2 . US2 A 1 4 ? 35.159 29.952 2.463 1.00 8.96 ? 4 US2 A C2 1
HETATM 67 O O2 . US2 A 1 4 ? 35.942 30.909 2.268 1.00 8.63 ? 4 US2 A O2 1
HETATM 68 N N3 . US2 A 1 4 ? 34.008 29.859 1.724 1.00 8.94 ? 4 US2 A N3 1
HETATM 69 C C4 . US2 A 1 4 ? 33.039 28.901 1.918 1.00 9.01 ? 4 US2 A C4 1
HETATM 70 O O4 . US2 A 1 4 ? 32.030 28.912 1.183 1.00 9.30 ? 4 US2 A O4 1
HETATM 71 C C5 . US2 A 1 4 ? 33.224 27.948 2.928 1.00 9.13 ? 4 US2 A C5 1
HETATM 72 S S5 . US2 A 1 4 ? 32.130 26.680 3.281 1.00 10.91 ? 4 US2 A S5 1
HETATM 73 C C5A . US2 A 1 4 ? 30.930 27.511 4.262 1.00 12.81 ? 4 US2 A C5A 1
HETATM 74 C "C1'" . US2 A 1 4 ? 36.618 29.041 4.216 1.00 10.06 ? 4 US2 A "C1'" 1
HETATM 75 O "O4'" . US2 A 1 4 ? 36.841 27.771 4.836 1.00 11.19 ? 4 US2 A "O4'" 1
HETATM 76 C "C4'" . US2 A 1 4 ? 36.915 27.937 6.252 1.00 10.89 ? 4 US2 A "C4'" 1
HETATM 77 C "C3'" . US2 A 1 4 ? 36.146 29.209 6.513 1.00 10.66 ? 4 US2 A "C3'" 1
HETATM 78 O "O3'" . US2 A 1 4 ? 36.441 29.831 7.806 1.00 10.57 ? 4 US2 A "O3'" 1
HETATM 79 C "C2'" . US2 A 1 4 ? 36.499 30.076 5.327 1.00 10.50 ? 4 US2 A "C2'" 1
HETATM 80 C "C5'" . US2 A 1 4 ? 36.321 26.746 6.978 1.00 11.63 ? 4 US2 A "C5'" 1
HETATM 81 O "O5'" . US2 A 1 4 ? 34.927 26.697 6.697 1.00 12.74 ? 4 US2 A "O5'" 1
HETATM 82 O O1P . US2 A 1 4 ? 32.563 25.853 7.070 1.00 13.25 ? 4 US2 A O1P 1
HETATM 83 O O2P . US2 A 1 4 ? 34.456 25.402 8.834 1.00 16.30 ? 4 US2 A O2P 1
ATOM 84 P P . DA A 1 5 ? 35.473 30.889 8.530 1.00 11.90 ? 5 DA A P 1
ATOM 85 O OP1 . DA A 1 5 ? 35.895 30.928 9.976 1.00 12.61 ? 5 DA A OP1 1
ATOM 86 O OP2 . DA A 1 5 ? 34.012 30.635 8.250 1.00 13.38 ? 5 DA A OP2 1
ATOM 87 O "O5'" . DA A 1 5 ? 35.908 32.260 7.840 1.00 9.43 ? 5 DA A "O5'" 1
ATOM 88 C "C5'" . DA A 1 5 ? 35.000 33.323 7.606 1.00 9.57 ? 5 DA A "C5'" 1
ATOM 89 C "C4'" . DA A 1 5 ? 35.544 34.168 6.474 1.00 8.39 ? 5 DA A "C4'" 1
ATOM 90 O "O4'" . DA A 1 5 ? 35.699 33.344 5.289 1.00 7.77 ? 5 DA A "O4'" 1
ATOM 91 C "C3'" . DA A 1 5 ? 34.652 35.322 6.051 1.00 8.70 ? 5 DA A "C3'" 1
ATOM 92 O "O3'" . DA A 1 5 ? 34.977 36.451 6.831 1.00 9.25 ? 5 DA A "O3'" 1
ATOM 93 C "C2'" . DA A 1 5 ? 35.035 35.502 4.592 1.00 8.02 ? 5 DA A "C2'" 1
ATOM 94 C "C1'" . DA A 1 5 ? 35.191 34.048 4.172 1.00 7.57 ? 5 DA A "C1'" 1
ATOM 95 N N9 . DA A 1 5 ? 33.966 33.375 3.723 1.00 7.34 ? 5 DA A N9 1
ATOM 96 C C8 . DA A 1 5 ? 33.335 32.315 4.322 1.00 7.34 ? 5 DA A C8 1
ATOM 97 N N7 . DA A 1 5 ? 32.275 31.898 3.685 1.00 6.77 ? 5 DA A N7 1
ATOM 98 C C5 . DA A 1 5 ? 32.210 32.734 2.578 1.00 7.20 ? 5 DA A C5 1
ATOM 99 C C6 . DA A 1 5 ? 31.309 32.807 1.495 1.00 7.06 ? 5 DA A C6 1
ATOM 100 N N6 . DA A 1 5 ? 30.269 31.982 1.359 1.00 8.14 ? 5 DA A N6 1
ATOM 101 N N1 . DA A 1 5 ? 31.524 33.761 0.559 1.00 6.77 ? 5 DA A N1 1
ATOM 102 C C2 . DA A 1 5 ? 32.566 34.596 0.701 1.00 7.14 ? 5 DA A C2 1
ATOM 103 N N3 . DA A 1 5 ? 33.482 34.616 1.675 1.00 7.56 ? 5 DA A N3 1
ATOM 104 C C4 . DA A 1 5 ? 33.247 33.653 2.585 1.00 7.26 ? 5 DA A C4 1
ATOM 105 P P . DC A 1 6 ? 33.835 37.463 7.308 1.00 10.01 ? 6 DC A P 1
ATOM 106 O OP1 . DC A 1 6 ? 34.520 38.542 8.072 1.00 11.65 ? 6 DC A OP1 1
ATOM 107 O OP2 . DC A 1 6 ? 32.724 36.710 7.898 1.00 10.92 ? 6 DC A OP2 1
ATOM 108 O "O5'" . DC A 1 6 ? 33.303 38.098 5.947 1.00 9.81 ? 6 DC A "O5'" 1
ATOM 109 C "C5'" . DC A 1 6 ? 34.123 38.991 5.204 1.00 9.94 ? 6 DC A "C5'" 1
ATOM 110 C "C4'" . DC A 1 6 ? 33.436 39.328 3.899 1.00 9.77 ? 6 DC A "C4'" 1
ATOM 111 O "O4'" . DC A 1 6 ? 33.275 38.126 3.109 1.00 9.09 ? 6 DC A "O4'" 1
ATOM 112 C "C3'" . DC A 1 6 ? 32.011 39.842 4.051 1.00 10.22 ? 6 DC A "C3'" 1
ATOM 113 O "O3'" . DC A 1 6 ? 31.979 41.213 4.443 1.00 12.67 ? 6 DC A "O3'" 1
ATOM 114 C "C2'" . DC A 1 6 ? 31.476 39.617 2.645 1.00 9.86 ? 6 DC A "C2'" 1
ATOM 115 C "C1'" . DC A 1 6 ? 32.064 38.237 2.375 1.00 8.98 ? 6 DC A "C1'" 1
ATOM 116 N N1 . DC A 1 6 ? 31.152 37.097 2.716 1.00 8.36 ? 6 DC A N1 1
ATOM 117 C C2 . DC A 1 6 ? 30.115 36.786 1.825 1.00 8.28 ? 6 DC A C2 1
ATOM 118 O O2 . DC A 1 6 ? 29.983 37.471 0.803 1.00 8.30 ? 6 DC A O2 1
ATOM 119 N N3 . DC A 1 6 ? 29.288 35.745 2.108 1.00 7.56 ? 6 DC A N3 1
ATOM 120 C C4 . DC A 1 6 ? 29.457 35.032 3.227 1.00 8.40 ? 6 DC A C4 1
ATOM 121 N N4 . DC A 1 6 ? 28.616 34.016 3.450 1.00 8.61 ? 6 DC A N4 1
ATOM 122 C C5 . DC A 1 6 ? 30.502 35.329 4.156 1.00 8.13 ? 6 DC A C5 1
ATOM 123 C C6 . DC A 1 6 ? 31.315 36.358 3.862 1.00 7.92 ? 6 DC A C6 1
ATOM 124 P P . DA A 1 7 ? 30.718 41.816 5.228 1.00 13.87 ? 7 DA A P 1
ATOM 125 O OP1 . DA A 1 7 ? 31.165 43.161 5.706 1.00 14.80 ? 7 DA A OP1 1
ATOM 126 O OP2 . DA A 1 7 ? 30.208 40.814 6.189 1.00 13.68 ? 7 DA A OP2 1
ATOM 127 O "O5'" . DA A 1 7 ? 29.679 41.980 4.068 1.00 11.80 ? 7 DA A "O5'" 1
ATOM 128 C "C5'" . DA A 1 7 ? 29.873 42.934 3.027 1.00 11.89 ? 7 DA A "C5'" 1
ATOM 129 C "C4'" . DA A 1 7 ? 28.694 42.842 2.084 1.00 11.33 ? 7 DA A "C4'" 1
ATOM 130 O "O4'" . DA A 1 7 ? 28.598 41.502 1.544 1.00 11.37 ? 7 DA A "O4'" 1
ATOM 131 C "C3'" . DA A 1 7 ? 27.357 43.066 2.762 1.00 11.25 ? 7 DA A "C3'" 1
ATOM 132 O "O3'" . DA A 1 7 ? 27.091 44.451 2.817 1.00 12.15 ? 7 DA A "O3'" 1
ATOM 133 C "C2'" . DA A 1 7 ? 26.376 42.326 1.868 1.00 10.43 ? 7 DA A "C2'" 1
ATOM 134 C "C1'" . DA A 1 7 ? 27.231 41.154 1.416 1.00 9.38 ? 7 DA A "C1'" 1
ATOM 135 N N9 . DA A 1 7 ? 27.061 39.889 2.127 1.00 8.57 ? 7 DA A N9 1
ATOM 136 C C8 . DA A 1 7 ? 27.805 39.403 3.173 1.00 8.48 ? 7 DA A C8 1
ATOM 137 N N7 . DA A 1 7 ? 27.421 38.214 3.579 1.00 8.24 ? 7 DA A N7 1
ATOM 138 C C5 . DA A 1 7 ? 26.368 37.890 2.730 1.00 8.46 ? 7 DA A C5 1
ATOM 139 C C6 . DA A 1 7 ? 25.527 36.756 2.627 1.00 8.48 ? 7 DA A C6 1
ATOM 140 N N6 . DA A 1 7 ? 25.643 35.689 3.423 1.00 8.48 ? 7 DA A N6 1
ATOM 141 N N1 . DA A 1 7 ? 24.564 36.766 1.670 1.00 8.62 ? 7 DA A N1 1
ATOM 142 C C2 . DA A 1 7 ? 24.449 37.837 0.871 1.00 8.67 ? 7 DA A C2 1
ATOM 143 N N3 . DA A 1 7 ? 25.180 38.956 0.867 1.00 9.36 ? 7 DA A N3 1
ATOM 144 C C4 . DA A 1 7 ? 26.128 38.918 1.831 1.00 8.60 ? 7 DA A C4 1
ATOM 145 P P . DC A 1 8 ? 26.212 45.061 3.976 1.00 13.09 ? 8 DC A P 1
ATOM 146 O OP1 . DC A 1 8 ? 26.240 46.537 3.795 1.00 14.21 ? 8 DC A OP1 1
ATOM 147 O OP2 . DC A 1 8 ? 26.650 44.488 5.268 1.00 14.45 ? 8 DC A OP2 1
ATOM 148 O "O5'" . DC A 1 8 ? 24.745 44.546 3.631 1.00 12.40 ? 8 DC A "O5'" 1
ATOM 149 C "C5'" . DC A 1 8 ? 24.090 45.069 2.472 1.00 13.26 ? 8 DC A "C5'" 1
ATOM 150 C "C4'" . DC A 1 8 ? 22.748 44.409 2.236 1.00 13.60 ? 8 DC A "C4'" 1
ATOM 151 O "O4'" . DC A 1 8 ? 22.948 42.973 2.143 1.00 12.98 ? 8 DC A "O4'" 1
ATOM 152 C "C3'" . DC A 1 8 ? 21.709 44.661 3.326 1.00 14.44 ? 8 DC A "C3'" 1
ATOM 153 O "O3'" . DC A 1 8 ? 20.463 44.981 2.719 1.00 17.41 ? 8 DC A "O3'" 1
ATOM 154 C "C2'" . DC A 1 8 ? 21.632 43.337 4.075 1.00 13.72 ? 8 DC A "C2'" 1
ATOM 155 C "C1'" . DC A 1 8 ? 22.044 42.320 3.009 1.00 12.57 ? 8 DC A "C1'" 1
ATOM 156 N N1 . DC A 1 8 ? 22.674 41.112 3.618 1.00 11.95 ? 8 DC A N1 1
ATOM 157 C C2 . DC A 1 8 ? 22.131 39.839 3.369 1.00 11.48 ? 8 DC A C2 1
ATOM 158 O O2 . DC A 1 8 ? 21.143 39.721 2.630 1.00 11.66 ? 8 DC A O2 1
ATOM 159 N N3 . DC A 1 8 ? 22.711 38.759 3.962 1.00 11.23 ? 8 DC A N3 1
ATOM 160 C C4 . DC A 1 8 ? 23.782 38.909 4.755 1.00 11.12 ? 8 DC A C4 1
ATOM 161 N N4 . DC A 1 8 ? 24.308 37.811 5.314 1.00 10.53 ? 8 DC A N4 1
ATOM 162 C C5 . DC A 1 8 ? 24.356 40.196 5.010 1.00 11.19 ? 8 DC A C5 1
ATOM 163 C C6 . DC A 1 8 ? 23.773 41.250 4.431 1.00 11.29 ? 8 DC A C6 1
HETATM 164 O O . HOH B 2 . ? 35.851 36.159 1.342 1.00 8.83 ? 20 HOH A O 1
HETATM 165 O O . HOH B 2 . ? 23.940 41.435 -0.241 1.00 14.18 ? 22 HOH A O 1
HETATM 166 O O . HOH B 2 . ? 26.127 47.812 1.468 1.00 13.94 ? 24 HOH A O 1
HETATM 167 O O . HOH B 2 . ? 26.133 16.485 -0.735 1.00 13.68 ? 25 HOH A O 1
HETATM 168 O O . HOH B 2 . ? 20.922 38.770 0.009 1.00 14.46 ? 27 HOH A O 1
HETATM 169 O O . HOH B 2 . ? 31.360 25.824 -2.802 1.00 12.41 ? 28 HOH A O 1
HETATM 170 O O . HOH B 2 . ? 30.045 31.054 5.013 1.00 22.75 ? 29 HOH A O 1
HETATM 171 O O . HOH B 2 . ? 30.469 24.484 6.082 1.00 20.87 ? 30 HOH A O 1
HETATM 172 O O . HOH B 2 . ? 28.448 19.661 -7.898 1.00 16.09 ? 31 HOH A O 1
HETATM 173 O O . HOH B 2 . ? 27.361 16.965 -8.511 1.00 13.05 ? 32 HOH A O 1
HETATM 174 O O . HOH B 2 . ? 17.921 38.593 -0.022 1.00 21.33 ? 34 HOH A O 1
HETATM 175 O O . HOH B 2 . ? 41.604 18.357 -3.859 1.00 19.89 ? 35 HOH A O 1
HETATM 176 O O . HOH B 2 . ? 38.885 16.927 -2.746 1.00 16.22 ? 36 HOH A O 1
HETATM 177 O O . HOH B 2 . ? 30.500 24.484 -0.479 1.00 21.03 ? 37 HOH A O 1
HETATM 178 O O . HOH B 2 . ? 24.580 15.515 1.370 1.00 23.37 ? 38 HOH A O 1
HETATM 179 O O . HOH B 2 . ? 31.506 34.058 7.430 1.00 17.44 ? 40 HOH A O 1
HETATM 180 O O . HOH B 2 . ? 25.894 42.750 7.029 1.00 21.92 ? 41 HOH A O 1
HETATM 181 O O . HOH B 2 . ? 29.174 21.866 0.189 1.00 22.17 ? 42 HOH A O 1
HETATM 182 O O . HOH B 2 . ? 31.386 22.848 -6.643 1.00 24.73 ? 45 HOH A O 1
HETATM 183 O O . HOH B 2 . ? 28.090 16.920 2.642 1.00 24.28 ? 46 HOH A O 1
HETATM 184 O O . HOH B 2 . ? 36.115 22.688 8.773 1.00 28.60 ? 49 HOH A O 1
HETATM 185 O O . HOH B 2 . ? 31.883 31.931 8.949 1.00 23.02 ? 50 HOH A O 1
HETATM 186 O O . HOH B 2 . ? 33.967 24.646 -6.307 1.00 19.95 ? 51 HOH A O 1
HETATM 187 O O . HOH B 2 . ? 27.836 20.391 -3.401 1.00 24.46 ? 52 HOH A O 1
HETATM 188 O O . HOH B 2 . ? 27.660 40.693 7.163 1.00 23.04 ? 53 HOH A O 1
HETATM 189 O O . HOH B 2 . ? 33.531 35.645 10.422 1.00 22.07 ? 54 HOH A O 1
HETATM 190 O O . HOH B 2 . ? 29.683 24.022 3.573 1.00 24.48 ? 55 HOH A O 1
HETATM 191 O O . HOH B 2 . ? 28.931 33.317 6.498 1.00 31.40 ? 57 HOH A O 1
HETATM 192 O O . HOH B 2 . ? 27.979 36.718 5.977 1.00 21.26 ? 58 HOH A O 1
HETATM 193 O O . HOH B 2 . ? 31.408 15.830 5.330 1.00 20.45 ? 59 HOH A O 1
HETATM 194 O O . HOH B 2 . ? 28.274 29.992 3.032 1.00 26.02 ? 60 HOH A O 1
HETATM 195 O O . HOH B 2 . ? 30.301 37.974 7.585 1.00 28.54 ? 61 HOH A O 1
HETATM 196 O O . HOH B 2 . ? 29.397 28.268 1.172 1.00 24.50 ? 62 HOH A O 1
HETATM 197 O O . HOH B 2 . ? 28.833 15.018 4.315 1.00 24.84 ? 63 HOH A O 1
HETATM 198 O O . HOH B 2 . ? 28.974 45.107 6.386 1.00 30.75 ? 67 HOH A O 1
HETATM 199 O O . HOH B 2 . ? 32.437 28.561 7.473 1.00 31.59 ? 69 HOH A O 1
HETATM 200 O O . HOH B 2 . ? 37.300 21.595 6.282 1.00 33.78 ? 73 HOH A O 1
HETATM 201 O O . HOH B 2 . ? 31.565 25.187 10.518 1.00 37.67 ? 80 HOH A O 1
#